HHsearch alignment for GI: 254781118 and conserved domain: cd04319
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.84 E-value=1.6e-20 Score=151.43 Aligned_cols=99 Identities=25% Similarity=0.387 Sum_probs=86.9
Q ss_pred EEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC--CCCCCCCCEEEE
Q ss_conf 899986881114877--2189977993599998054279678888742374316899657630566--553421220122
Q gi|254781118|r 62 MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKR--GELTVNAQKIIM 137 (502)
Q Consensus 62 ~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~--gelei~~~~~~~ 137 (502)
T Consensus 1 eV~l~GWV~~~R~~g~i~Fi~LRD~tG~iQ~v~~~~-~~~~~~~~~~~l~~Es~v~v~G~v~~~~~~~~giEi~~~~ieI 79 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGIVQAVFSKD-LNEEAYREAKKVGIESSVIVEGAVKADPRAPGGAEVHGEKLEI 79 (103)
T ss_pred CEEEEEEEEEEECCCCEEEEEECCCCEEEEEEECCC-CCHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCEEEEEEEEEE
T ss_conf 999999996763289779999826982799998787-7979999998568639999977988689999878899728999
Q ss_pred ECCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf 113555432221253114454201100
Q gi|254781118|r 138 LSKALNSIPETYYGLSDVEIRYRKRYL 164 (502)
Q Consensus 138 l~~~~~~lP~~~~~~~d~e~rl~~R~L 164 (502)
T Consensus 80 l~~a~-~~Pi~--~~~~~e~~l~~R~L 103 (103)
T cd04319 80 IQNVE-FFPIT--EDASDEFLLDVRHL 103 (103)
T ss_pred EECCC-CCCCC--CCCCCHHHHHCCCC
T ss_conf 98587-98988--98880231101379