HHsearch alignment for GI: 254781118 and conserved domain: cd04323
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.61 E-value=3.6e-15 Score=116.93 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=67.8
Q ss_pred EEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC-----CCCCCCCCE
Q ss_conf 899986881114877--2189977993599998054279678888742374316899657630566-----553421220
Q gi|254781118|r 62 MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKR-----GELTVNAQK 134 (502)
Q Consensus 62 ~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~-----gelei~~~~ 134 (502)
T Consensus 1 kV~l~GWV~~~R~~g~l~Fi~LRD~~G~iQ~V~~~~~~~~--~~~~~~l~~Es~v~V~G~v~~~~~~~~~~~~~Ei~~~~ 78 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKLVTE--FYDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQVDY 78 (84)
T ss_pred CEEEEEEEEEEECCCCCEEEEEEECCEEEEEEECCCCCCH--HHHHHHCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf 9999998998623899289999508879999988865736--89997388835999999999789777799759999439
Q ss_pred EEEECC
Q ss_conf 122113
Q gi|254781118|r 135 IIMLSK 140 (502)
Q Consensus 135 ~~~l~~ 140 (502)
T Consensus 79 i~vl~e 84 (84)
T cd04323 79 LEIIGE 84 (84)
T ss_pred EEEECC
T ss_conf 999639