HHsearch alignment for GI: 254781118 and conserved domain: cd04323

>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.61  E-value=3.6e-15  Score=116.93  Aligned_cols=77  Identities=19%  Similarity=0.314  Sum_probs=67.8

Q ss_pred             EEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC-----CCCCCCCCE
Q ss_conf             899986881114877--2189977993599998054279678888742374316899657630566-----553421220
Q gi|254781118|r   62 MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKR-----GELTVNAQK  134 (502)
Q Consensus        62 ~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~-----gelei~~~~  134 (502)
T Consensus         1 kV~l~GWV~~~R~~g~l~Fi~LRD~~G~iQ~V~~~~~~~~--~~~~~~l~~Es~v~V~G~v~~~~~~~~~~~~~Ei~~~~   78 (84)
T cd04323           1 RVKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKLVTE--FYDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQVDY   78 (84)
T ss_pred             CEEEEEEEEEEECCCCCEEEEEEECCEEEEEEECCCCCCH--HHHHHHCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf             9999998998623899289999508879999988865736--89997388835999999999789777799759999439


Q ss_pred             EEEECC
Q ss_conf             122113
Q gi|254781118|r  135 IIMLSK  140 (502)
Q Consensus       135 ~~~l~~  140 (502)
T Consensus        79 i~vl~e   84 (84)
T cd04323          79 LEIIGE   84 (84)
T ss_pred             EEEECC
T ss_conf             999639