HHsearch alignment for GI: 254781118 and conserved domain: cd04485
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.21 E-value=0.078 Score=31.00 Aligned_cols=72 Identities=29% Similarity=0.487 Sum_probs=51.8
Q ss_pred EEEEEECCCCC----CC---CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 99868811148----77---218997799359999805427967888874237431689965763056655342122012
Q gi|254781118|r 64 TVAGRVYSSRN----SG---MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKRGELTVNAQKII 136 (502)
Q Consensus 64 ~i~Grv~~~R~----~G---~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~gelei~~~~~~ 136 (502)
T Consensus 1 ~iaG~I~~~k~~~tk~G~~~a~~tleD~~g~~e~~~F~~~----~~~~~~~l~~~~~v~i~g~v~~~~-~~~~l~~~~i~ 75 (84)
T cd04485 1 TVAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPET----YEKYRDLLKEDALLLVEGKVERRD-GGLRLIAERIE 75 (84)
T ss_pred CEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEECHHH----HHHHHHHHCCCCEEEEEEEEEEEC-CEEEEEEEEEE
T ss_conf 9899999989985579998999999437874999996999----999888744698899999999969-98999999946
Q ss_pred EECC
Q ss_conf 2113
Q gi|254781118|r 137 MLSK 140 (502)
Q Consensus 137 ~l~~ 140 (502)
T Consensus 76 ~l~~ 79 (84)
T cd04485 76 DLED 79 (84)
T ss_pred EHHH
T ss_conf 7899