HHsearch alignment for GI: 254781118 and conserved domain: cd04489
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=94.46 E-value=0.2 Score=28.37 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=54.5
Q ss_pred EEEEEEECCCC--CCC-CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCEEEE
Q ss_conf 99986881114--877-2189977993599998054279678888742374316899657630-566553421220122
Q gi|254781118|r 63 ITVAGRVYSSR--NSG-MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRR-TKRGELTVNAQKIIM 137 (502)
Q Consensus 63 V~i~Grv~~~R--~~G-~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~-~~~gelei~~~~~~~ 137 (502)
T Consensus 2 vwV~GEIs~~~~~~sGh~Yf~LkD~~a~i~~v~~~~~~~----~~~~~~~~G~~V~v~g~~~~y~~~G~~ql~v~~i~~ 76 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNAR----RLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEIEP 76 (78)
T ss_pred EEEEEEECCCEECCCCEEEEEEECCCEEEEEEEEHHHHH----HCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE
T ss_conf 899999885582899639999947881999999667883----279998899899999999999898409999999997