HHsearch alignment for GI: 254781118 and conserved domain: cd04490
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=96.27 E-value=0.029 Score=33.78 Aligned_cols=60 Identities=23% Similarity=0.491 Sum_probs=47.5
Q ss_pred EEEEEEEECCCCCC--C-CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf 89998688111487--7-21899779935999980542796788887423743168996576305
Q gi|254781118|r 62 MITVAGRVYSSRNS--G-MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRT 123 (502)
Q Consensus 62 ~V~i~Grv~~~R~~--G-~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~ 123 (502)
T Consensus 1 ev~iIGmV~d~r~TknG~~~~~lED~TG~i~vl~~kd~--~~~~~~~~~ll~DeVIGV~G~~s~~ 63 (79)
T cd04490 1 EVSIIGMVNDVRSTKNGHRIVELEDTTGRITVLLTKDK--EELFEEAEDILPDEVIGVSGTVSKD 63 (79)
T ss_pred CEEEEEEECCCEECCCCCEEEEEECCCCEEEEEEECCC--HHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 96999999332761688789999879998999996893--6775667525688789999998789