BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(502 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 502
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/502 (100%), Positives = 502/502 (100%)
Query: 1 MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ 60
MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ
Sbjct: 1 MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ 60
Query: 61 DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV 120
DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV
Sbjct: 61 DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV 120
Query: 121 RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS 180
RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS
Sbjct: 121 RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS 180
Query: 181 LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL 240
LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL
Sbjct: 181 LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL 240
Query: 241 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG 300
ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG
Sbjct: 241 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG 300
Query: 301 TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW 360
TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW
Sbjct: 301 TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW 360
Query: 361 GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS 420
GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS
Sbjct: 361 GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS 420
Query: 421 ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA 480
ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA
Sbjct: 421 ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA 480
Query: 481 PSIRDVILFPAQRVKNGSRKTE 502
PSIRDVILFPAQRVKNGSRKTE
Sbjct: 481 PSIRDVILFPAQRVKNGSRKTE 502
>gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 355
Score = 144 bits (364), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 168/332 (50%), Gaps = 28/332 (8%)
Query: 178 QRSLLISQIRHFMEKKGFMEVETPILQPIYGGAT-ADPFKTH---HNILKADMYLRIAPE 233
+R+++ S +R + + F+E+++ LQ G T F T + ++ +YL+ +PE
Sbjct: 24 KRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPE 83
Query: 234 LYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHN 293
K++L +G +++F +RN H PEFTM+E Y A+ Y +MK ++
Sbjct: 84 FSCKKLLAAG-EEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRC 142
Query: 294 LAK-------TLHGTTDIPFGE-KVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEAR- 344
A+ + PF E + I+ FA + + L T LD DQ R
Sbjct: 143 AAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDL---GTTLD----NPDQPDRH 195
Query: 345 ---VAAQSIGITVENDALWGEVMMTIFEEKIEKNI-VNPTHITD-FPKDISPFAKEVAGE 399
+ AQ GI V +D W ++ I EKIE N+ +N I D +P S A +
Sbjct: 196 LLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPAD 255
Query: 400 KRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQ-RGEHTILDEDFLDAMTY 458
R +RFE Y E+CNA EL DP+EQR R E+++++ + E +DEDFL +T
Sbjct: 256 PRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT- 314
Query: 459 GMPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490
MP +SG+ +G DRL+ML+T A +I +VI P
Sbjct: 315 EMPQSSGIAMGFDRLVMLVTGANNINEVIWTP 346
>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 622
Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 22/244 (9%)
Query: 62 MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQ 119
+ ++G V+ R G +F+DI D G Q+ + D+A + + ++ I G
Sbjct: 20 FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSA---CFEIAKSVRSEWVLCIDGL 76
Query: 120 VRRTKR---------GELTVNAQKIIMLSKALNSIPETYYGLSDV--EIRYRKRYLDIIS 168
V G++ ++AQKI +LS A +P +G + IR++ R+LD+
Sbjct: 77 VMSRSAETINANIITGQIELSAQKIEILSVA-EELPLPVFGEREYPESIRFKYRFLDLRR 135
Query: 169 NSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMY- 227
++ K +R+ +I+ +R M + F+E TPIL D F + + Y
Sbjct: 136 DTLHK-NIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARD-FLVPSRVNQGSFYA 193
Query: 228 LRIAPELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNP-EFTMIEAYWAYTDYRDMMKL 286
L AP+ Y + ++ SG D+ F++ FR+E S P EF ++ ++ + D++
Sbjct: 194 LPQAPQQYKQLLMASGF-DRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNT 252
Query: 287 VEDL 290
+E++
Sbjct: 253 MENV 256
Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 405 RFETYCNGWEIC-----NAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYG 459
+++ CNG+EI N SE+ + + ++V ++ G + A G
Sbjct: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYR--------AFQCG 532
Query: 460 MPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490
MPP G+ GIDR++MLL A ++R+V LFP
Sbjct: 533 MPPHGGIAAGIDRIVMLLLGAKNVREVSLFP 563
>gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 271
Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 104 LLSMIDIGDIIGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRY 159
+L I++ D++G T VRR L NA+K ++ S+A P TY ++ + +
Sbjct: 216 VLGKINV-DVVGGTELVRRM----LRENARKAVIKSQAFRLSPSTYKSWRNITLFF 266
>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 26.6 bits (57), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 231 APELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAY 274
+PE Y+K +G +V+ +N+N +NE + P + + AY
Sbjct: 411 SPESYIKDS--TGRPVRVYNINKNSKNEFILLEMTPHYINVTAY 452
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 88 IQIFTHKDTADQDSQNLLSMIDIG-DIIGITGQVRRTKRGELTVNAQKI---IMLSKALN 143
+ I HK D D N+LS+++ G D I G R L+V I I+ + +
Sbjct: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
Query: 144 SIPETYYGLSDVEIRY-------RKRYLDI 166
+T Y + I Y RK+Y DI
Sbjct: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDI 91
>gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 496
Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 179 RSLLISQIRHFMEKKGFMEVETPILQ 204
R+ ++ IR+ E GF +ETP+L+
Sbjct: 26 RNRILDSIRNIYENYGFDPIETPLLE 51
Score = 24.3 bits (51), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 462 PASGLGLGIDRLIMLLTNAPS 482
PA+G +GI RLI+ L + S
Sbjct: 347 PATGFSIGISRLIVALKSLES 367
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 155 VEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFME 197
+E+ RYLD++ + DSK+ + ++ HF E G+ME
Sbjct: 1614 IEVFSTMRYLDVVVDIDSKLGIR----VMRDFLHFAE-TGYME 1651
>gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 366
Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 467 GLGIDRLIMLLTNAPSIRD 485
G+G+DR+ ML P +R+
Sbjct: 321 GMGLDRIAMLKYGMPDVRE 339
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 310,077
Number of Sequences: 1233
Number of extensions: 12897
Number of successful extensions: 49
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 15
length of query: 502
length of database: 328,796
effective HSP length: 78
effective length of query: 424
effective length of database: 232,622
effective search space: 98631728
effective search space used: 98631728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)