Query gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:33:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781119.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1txp_A HnRNP C, heterogeneous 60.6 3.7 0.00015 20.5 2.1 21 9-29 4-24 (28)
2 2kvs_A Uncharacterized protein 16.5 19 0.00081 16.5 -0.5 23 46-71 7-29 (80)
3 1xkm_A Distinctin chain A; por 11.0 80 0.0034 13.0 1.4 12 44-55 6-17 (26)
4 1upt_B Golgi autoantigen, golg 9.4 94 0.0039 12.7 1.2 28 6-33 15-42 (60)
5 1l8y_A Upstream binding factor 8.5 1.1E+02 0.0044 12.4 1.4 14 28-41 14-27 (91)
6 3bz1_E Cytochrome B559 subunit 7.9 1.1E+02 0.0047 12.2 1.5 10 66-75 16-25 (84)
7 2hmq_A Hemerythrin; oxygen tra 6.5 1.3E+02 0.0055 11.9 1.9 20 62-81 89-108 (113)
8 2avr_X Adhesion A; antiparalle 6.4 1.3E+02 0.0056 11.8 3.0 33 9-41 73-105 (119)
9 2avk_A Hemerythrin-like domain 6.3 73 0.0031 13.3 -0.5 19 64-82 108-126 (136)
10 2vog_B BCL-2-modifying factor; 5.8 1.4E+02 0.0061 11.6 2.0 14 16-29 9-22 (27)
No 1
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=60.59 E-value=3.7 Score=20.53 Aligned_cols=21 Identities=48% Similarity=0.708 Sum_probs=17.4
Q ss_pred ECCHHHHHHHHHHHHHHHHHH
Q ss_conf 002378989899999996411
Q gi|254781119|r 9 MKGEVTLLKQKVDCLIAQFNK 29 (85)
Q Consensus 9 mkgevtllkqkvdcliaqfnk 29 (85)
.|.|.|-.|||||.|.....|
T Consensus 4 ik~eltqikqkvdsllenlek 24 (28)
T 1txp_A 4 IKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999998987
No 2
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=16.52 E-value=19 Score=16.53 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 18999988998873102437789999
Q gi|254781119|r 46 GFTAFIKGFISIALPIGSFPALRTWI 71 (85)
Q Consensus 46 gftafikgfisialpigsfpalrtwi 71 (85)
.|-.||.||+...-|+|+ |..||
T Consensus 7 SFYdFiq~F~~DdTPLGe---LA~wI 29 (80)
T 2kvs_A 7 TFYNFIMGFQNDNTPFGI---LAEHV 29 (80)
T ss_dssp HHHHHHTTTTTSSCHHHH---HHHHH
T ss_pred CHHHHHHHCCCCCCCHHH---HHHHH
T ss_conf 099999855578996689---99998
No 3
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=10.98 E-value=80 Score=13.05 Aligned_cols=12 Identities=50% Similarity=0.719 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 101899998899
Q gi|254781119|r 44 AKGFTAFIKGFI 55 (85)
Q Consensus 44 akgftafikgfi 55 (85)
..||||.||..-
T Consensus 6 ppgftaliktlr 17 (26)
T 1xkm_A 6 PPGFTALIKTLR 17 (26)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 976899999987
No 4
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=9.36 E-value=94 Score=12.68 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=21.7
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5530023789898999999964114668
Q gi|254781119|r 6 FVEMKGEVTLLKQKVDCLIAQFNKQQSV 33 (85)
Q Consensus 6 fvemkgevtllkqkvdcliaqfnkqqsv 33 (85)
|--|-|..+.---||-+-+++|+.+|.-
T Consensus 15 feYMmG~Et~tlaKVi~av~kF~~~Q~q 42 (60)
T 1upt_B 15 FEYMMGRETKTMAKVITTVLKFPDDQTQ 42 (60)
T ss_dssp HHHHTTSSHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 9997075157899999999908999999
No 5
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=8.52 E-value=1.1e+02 Score=12.40 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 11466899999998
Q gi|254781119|r 28 NKQQSVIDEFFTIL 41 (85)
Q Consensus 28 nkqqsvidefftil 41 (85)
-=|||||.++..-.
T Consensus 14 iWqqSvigdYlak~ 27 (91)
T 1l8y_A 14 IWQQSVIGDYLARF 27 (91)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 6
>3bz1_E Cytochrome B559 subunit alpha; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3kzi_E* 1izl_E* 3a0b_E* 3a0h_E*
Probab=7.91 E-value=1.1e+02 Score=12.24 Aligned_cols=10 Identities=40% Similarity=1.195 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q ss_conf 7899999999
Q gi|254781119|r 66 ALRTWIIHHV 75 (85)
Q Consensus 66 alrtwiihhv 75 (85)
..|-|+||-+
T Consensus 16 siRYWvIHsI 25 (84)
T 3bz1_E 16 SVRYWVIHSI 25 (84)
T ss_dssp CHHHHHHHHH
T ss_pred EEEEEEEEEE
T ss_conf 0446888763
No 7
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Probab=6.53 E-value=1.3e+02 Score=11.85 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 24377899999999999997
Q gi|254781119|r 62 GSFPALRTWIIHHVVGLLKK 81 (85)
Q Consensus 62 gsfpalrtwiihhvvgllkk 81 (85)
...-.|++|++.|+..-=++
T Consensus 89 ~~~~~l~~Wl~~HI~~~D~~ 108 (113)
T 2hmq_A 89 GDVTYAKNWLVNHIKTIDFK 108 (113)
T ss_dssp CCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999997988787
No 8
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=6.41 E-value=1.3e+02 Score=11.81 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=18.1
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 002378989899999996411466899999998
Q gi|254781119|r 9 MKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTIL 41 (85)
Q Consensus 9 mkgevtllkqkvdcliaqfnkqqsvidefftil 41 (85)
|++-|.-++.-..-|-.....|+.+||.|=-|-
T Consensus 73 y~~lvkqY~~~~keLd~~ik~qekiId~FE~ik 105 (119)
T 2avr_X 73 YQELASKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999899999999999
No 9
>2avk_A Hemerythrin-like domain protein DCRH; hemerythrin-like oxygen sensor, oxygen storage/transport complex; 1.53A {Desulfovibrio vulgaris} PDB: 2awy_A 2awc_A
Probab=6.32 E-value=73 Score=13.28 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 3778999999999999974
Q gi|254781119|r 64 FPALRTWIIHHVVGLLKKL 82 (85)
Q Consensus 64 fpalrtwiihhvvgllkkl 82 (85)
+..+++|++.|+..-=+++
T Consensus 108 ~~~l~~Wl~~HI~~~D~~~ 126 (136)
T 2avk_A 108 LRGLVDWLVNHIMKEDKKY 126 (136)
T ss_dssp HHHHHHHHHHHHHTTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999949973999
No 10
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, cytoplasm, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=5.83 E-value=1.4e+02 Score=11.62 Aligned_cols=14 Identities=29% Similarity=0.871 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89899999996411
Q gi|254781119|r 16 LKQKVDCLIAQFNK 29 (85)
Q Consensus 16 lkqkvdcliaqfnk 29 (85)
..||..|.-.||..
T Consensus 9 ia~klqciadqfhr 22 (27)
T 2vog_B 9 IARKLQCIADQFHR 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
Done!