Query gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:24:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781119.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nu9c2 a.8.6.1 (C:146-281) St 13.0 33 0.0024 13.9 1.1 11 30-40 73-83 (136)
2 d1uptb_ a.193.1.1 (B:) Golgi a 10.2 48 0.0035 13.0 1.2 28 6-33 13-40 (58)
3 d1l8ya_ a.21.1.1 (A:) Nucleola 9.6 55 0.004 12.7 1.4 18 25-42 10-27 (84)
4 d2fx0a2 a.121.1.1 (A:77-198) H 7.3 55 0.004 12.6 0.5 12 61-72 47-58 (122)
5 d2hmza_ a.24.4.1 (A:) Hemeryth 5.3 90 0.0066 11.4 2.0 20 62-81 89-108 (113)
6 d1x52a1 d.79.3.2 (A:8-118) Cel 4.9 96 0.007 11.3 1.2 38 26-63 10-47 (111)
7 d2o8ra1 a.7.15.1 (A:4-112) Pol 4.9 96 0.007 11.3 1.6 13 31-43 41-53 (109)
8 d1uj8a1 a.159.5.1 (A:13-76) Ir 4.8 98 0.0072 11.2 1.2 12 62-73 26-37 (64)
9 d1fc2c_ a.8.1.1 (C:) Immunoglo 4.3 1.1E+02 0.0078 11.0 1.5 16 27-44 1-16 (44)
10 d1w9ca_ a.118.1.19 (A:) Export 4.2 1.1E+02 0.008 11.0 1.7 51 25-84 231-281 (321)
No 1
>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=12.97 E-value=33 Score=13.86 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 46689999999
Q gi|254781119|r 30 QQSVIDEFFTI 40 (85)
Q Consensus 30 qqsvideffti 40 (85)
-.|.||+||--
T Consensus 73 LeSIIDdFF~e 83 (136)
T d1nu9c2 73 LESIIEDFFIE 83 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999988
No 2
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.23 E-value=48 Score=12.98 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=20.9
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5530023789898999999964114668
Q gi|254781119|r 6 FVEMKGEVTLLKQKVDCLIAQFNKQQSV 33 (85)
Q Consensus 6 fvemkgevtllkqkvdcliaqfnkqqsv 33 (85)
|--|-|.-+.---||-|-+++|+.+|+-
T Consensus 13 feYMmG~E~~tlaKVi~av~kF~~~Q~q 40 (58)
T d1uptb_ 13 FEYMMGRETKTMAKVITTVLKFPDDQTQ 40 (58)
T ss_dssp HHHHTTSSHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 9997076413799999999918999999
No 3
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.63 E-value=55 Score=12.65 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 964114668999999985
Q gi|254781119|r 25 AQFNKQQSVIDEFFTILT 42 (85)
Q Consensus 25 aqfnkqqsvidefftilt 42 (85)
|+---|||||..+..-..
T Consensus 10 aeeiWQqsvIgdYlA~fk 27 (84)
T d1l8ya_ 10 AEEIWQQSVIGDYLARFK 27 (84)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999989999999997
No 4
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=7.35 E-value=55 Score=12.64 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=8.4
Q ss_pred CCCCHHHHHHHH
Q ss_conf 024377899999
Q gi|254781119|r 61 IGSFPALRTWII 72 (85)
Q Consensus 61 igsfpalrtwii 72 (85)
+|+|-+||+|.-
T Consensus 47 ~~~~eqLr~iL~ 58 (122)
T d2fx0a2 47 IGSFEQLKEILQ 58 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 325999999999
No 5
>d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste dyscritum) [TaxId: 6436]}
Probab=5.28 E-value=90 Score=11.42 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 24377899999999999997
Q gi|254781119|r 62 GSFPALRTWIIHHVVGLLKK 81 (85)
Q Consensus 62 gsfpalrtwiihhvvgllkk 81 (85)
..+..+++|++.|+.+-=+|
T Consensus 89 ~~~~~l~~WL~~HI~~~D~~ 108 (113)
T d2hmza_ 89 GDVTYAKNWLVNHIKTIDFK 108 (113)
T ss_dssp CCHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999996998598
No 6
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.92 E-value=96 Score=11.28 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 64114668999999985210189999889988731024
Q gi|254781119|r 26 QFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALPIGS 63 (85)
Q Consensus 26 qfnkqqsvidefftilttakgftafikgfisialpigs 63 (85)
.+-++..++++||.-+.+..|-.++=.--+.-|+-.|.
T Consensus 10 k~~~E~k~~e~f~~~l~k~~~~~~YG~~ev~~Ale~GA 47 (111)
T d1x52a1 10 KAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMA 47 (111)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC
T ss_conf 89999999999999981799959988999999998399
No 7
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.91 E-value=96 Score=11.28 Aligned_cols=13 Identities=31% Similarity=0.651 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6689999999852
Q gi|254781119|r 31 QSVIDEFFTILTT 43 (85)
Q Consensus 31 qsvidefftiltt 43 (85)
.|-.||||.|--.
T Consensus 41 ssNLDEFFmVRVA 53 (109)
T d2o8ra1 41 SSNLEEFYTVRVA 53 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 8418899999999
No 8
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=4.76 E-value=98 Score=11.22 Aligned_cols=12 Identities=25% Similarity=0.673 Sum_probs=8.6
Q ss_pred CCCHHHHHHHHH
Q ss_conf 243778999999
Q gi|254781119|r 62 GSFPALRTWIIH 73 (85)
Q Consensus 62 gsfpalrtwiih 73 (85)
-.|+.||.||+.
T Consensus 26 irFtDL~~wV~~ 37 (64)
T d1uj8a1 26 VRFTDMHQWICD 37 (64)
T ss_dssp CCHHHHHHHHHT
T ss_pred EEHHHHHHHHHC
T ss_conf 315999999962
No 9
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=4.29 E-value=1.1e+02 Score=11.02 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 411466899999998521
Q gi|254781119|r 27 FNKQQSVIDEFFTILTTA 44 (85)
Q Consensus 27 fnkqqsvidefftiltta 44 (85)
|||+|.. .|+.|+.-.
T Consensus 1 fnkeqq~--Af~Eil~lP 16 (44)
T d1fc2c_ 1 FNKEQQN--AFYEILHLP 16 (44)
T ss_dssp CCSSHHH--HHHHHHTCS
T ss_pred CCHHHHH--HHHHHHHCC
T ss_conf 9689999--999998388
No 10
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.17 E-value=1.1e+02 Score=10.96 Aligned_cols=51 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 964114668999999985210189999889988731024377899999999999997438
Q gi|254781119|r 25 AQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALPIGSFPALRTWIIHHVVGLLKKLFP 84 (85)
Q Consensus 25 aqfnkqqsvidefftilttakgftafikgfisialpigsfpalrtwiihhvvgllkklfp 84 (85)
+-|+.|-+++...|.+.. .+.++..+.-+.-..-+..+..+++++|...||
T Consensus 231 ~gf~~q~~iL~~Lf~ive---------~~~i~~~l~~~~~~~n~~~l~e~l~~lL~~~Fp 281 (321)
T d1w9ca_ 231 AGLTMHASILAYMFNLVE---------EGKISTSLNPGNPVNNQIFLQEYVANLLKSAFP 281 (321)
T ss_dssp TTHHHHHHHHHHHHHHHH---------TTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHH---------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 779999999999999998---------054445555344554599999999999997578
Done!