RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781119|ref|YP_003065532.1| hypothetical protein
CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
           glycosyltransferase, transferase; HET: NDG; 1.85A
           {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
           2zuw_A*
          Length = 759

 Score = 25.9 bits (57), Expect = 2.4
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 31  QSVIDEFFTILTTAKGFTAFIKGFISIALPIGSFPALRTWIIHHV 75
             + +EF  I     G  A  +  ++I   + S+  +R+W+   V
Sbjct: 417 THIANEFRDIHDRTGGVAAEGELNVAI---LNSWGKMRSWMAFTV 458


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.144    0.430 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 709,764
Number of extensions: 25520
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 4
Length of query: 85
Length of database: 5,693,230
Length adjustment: 53
Effective length of query: 32
Effective length of database: 4,408,298
Effective search space: 141065536
Effective search space used: 141065536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.4 bits)