BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781119|ref|YP_003065532.1| hypothetical protein
CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score =  171 bits (434), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP 60
          MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP
Sbjct: 1  MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP 60

Query: 61 IGSFPALRTWIIHHVVGLLKKLFPF 85
          IGSFPALRTWIIHHVVGLLKKLFPF
Sbjct: 61 IGSFPALRTWIIHHVVGLLKKLFPF 85


>gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 304

 Score = 22.7 bits (47), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 38  FTILTTAKGFTAFIKGFISIALPIGSFPALRTWIIHHVVGLLKKL 82
           F +L+   G T F+K +        ++ A R W +H   G++ KL
Sbjct: 204 FEVLSNIAGITKFVKAY--------NWIAERRWDLHLHNGIIIKL 240


>gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 449

 Score = 20.8 bits (42), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2   TRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKG 53
           +R+E  E   ++ +   K+  +    N+ +S++DE+  +L      +AF +G
Sbjct: 293 SRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILLV----ISAFAEG 340


>gi|254780155|ref|YP_003064568.1| hypothetical protein CLIBASIA_00190 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 31

 Score = 20.8 bits (42), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 13 VTLLKQKVDCLIAQFNKQQS 32
          V  L   +DC++   NK++ 
Sbjct: 7  VIYLSNSMDCILGYMNKEEE 26


>gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 420

 Score = 20.4 bits (41), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 50  FIKGFISIALPIGSFPAL 67
           +IKGF  + +  G FPAL
Sbjct: 243 YIKGFNPLTIVKGMFPAL 260


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 20.0 bits (40), Expect = 8.1,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query: 15  LLKQKVDCLIAQFNKQQSVI 34
           +L+ K+D  ++QF + Q++I
Sbjct: 516 ILENKIDIPLSQFIEDQNLI 535


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.144    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,481
Number of Sequences: 1233
Number of extensions: 1821
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 85
length of database: 328,796
effective HSP length: 54
effective length of query: 31
effective length of database: 262,214
effective search space:  8128634
effective search space used:  8128634
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 31 (16.5 bits)