HHsearch alignment for GI: 254781120 and conserved domain: COG1180
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones].
Probab=99.06 E-value=6.6e-08 Score=79.58 Aligned_cols=213 Identities=19% Similarity=0.325 Sum_probs=144.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCHH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 544302346773389884065100486132244111-0278989999999999997222034444343444545861101
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G~-~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~N 181 (384)
T Consensus 24 ie~~~~~d~~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~-----------------~~~~~g 86 (260)
T COG1180 24 IEKKPLVDGPGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFY-----------------SESGGG 86 (260)
T ss_pred CEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHHH-----------------CCCCCE
T ss_conf 506477467984499998789899899897946760656565645789899998743-----------------169988
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH--HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCC
Q ss_conf 4410145445428999999603768457787753688851387414--78860125651799840455113444123312
Q gi|254781120|r 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 (384)
Q Consensus 182 iVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~--I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~ 259 (384)
T Consensus 87 vt~SG-GEP~~q~e~~~~~~~~ake~-Gl~-----~~l~TnG~~~~~~~~~l~~~~D-~v~~DlK~~~~~~yr~~tg--- 155 (260)
T COG1180 87 VTFSG-GEPTLQAEFALDLLRAAKER-GLH-----VALDTNGFLPPEALEELLPLLD-AVLLDLKAFDDELYRKLTG--- 155 (260)
T ss_pred EEEEC-CHHHHHHHHHHHHHHHHHHC-CCE-----EEEECCCCCCHHHHHHHHHHCC-CEEEECCCCCHHHHHHHHC---
T ss_conf 99989-60444399999999999987-990-----8997689988268999997423-1488406688788898756---
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCC-CCHHHHHH
Q ss_conf 57899999999999862589459999987269998889999999983254--5316675127788798868-89899999
Q gi|254781120|r 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEYLC-SDQKDIVT 336 (384)
Q Consensus 260 ~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~--~~~vNLIp~N~~~~~~~~~-~~~~~i~~ 336 (384)
T Consensus 156 -~~~~~vl~~~~~l~~-~-g~~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~ 232 (260)
T COG1180 156 -ADNEPVLENLELLAD-L-GVHVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEE 232 (260)
T ss_pred -CCHHHHHHHHHHHHH-C-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHCCCCCCCCHHHHHH
T ss_conf -871688999999861-7-9839998873389889999999999999730866655875668740113579992888998
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998798
Q gi|254781120|r 337 FSECIKRSGY 346 (384)
Q Consensus 337 F~~~L~~~Gi 346 (384)
T Consensus 233 ~~~~a~~~~~ 242 (260)
T COG1180 233 AKKLAKEEGL 242 (260)
T ss_pred HHHHHHHHHH
T ss_conf 8877899988