HHsearch alignment for GI: 254781120 and conserved domain: PRK06245
>PRK06245 cofG FO synthase subunit 1; Reviewed.
Probab=96.23 E-value=0.091 Score=34.13 Aligned_cols=221 Identities=12% Similarity=0.098 Sum_probs=96.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 5443023467733898840651004861322441-110278989999999999997222034444343444545861101
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~N 181 (384)
T Consensus 11 ~~n~~In~TN---i-------C~~~C~fCaF~~~~~~a~~ls~eev~~~~~ea~~~--------------------G~tE 60 (336)
T PRK06245 11 SRNVFIPLTY---E-------CRNRCGYCTFRPDPGEASLLSPEEVREILERGQDA--------------------GCTE 60 (336)
T ss_pred ECCCCCCCCC---C-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCEE
T ss_conf 1862616775---4-------02688258674688756877999999999999976--------------------9839
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCEE-----EEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf 4410145445428999999603768---45778775368-----88513874--14788601256517998404551134
Q gi|254781120|r 182 IVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRI-----TLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLR 251 (384)
Q Consensus 182 iVfMGmGEPl~N~d~v~~ai~~l~~---~~g~~~~~r~I-----TvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R 251 (384)
T Consensus 61 vl~~gG~~P~~~~~~~~~l~~~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~-v~asmG~mlE~~se~l~ 139 (336)
T PRK06245 61 ALFTFGEVPDESEEIREQLAEPGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKP-VNASMGLMLEQTSPRLL 139 (336)
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCCCCCCHHHHHHHH
T ss_conf 99805788663689999999707550778899985888763655223667678999998753-59766757123568988
Q ss_pred HHH---CCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCCCCC
Q ss_conf 441---23312578999999999998625894--5999998726999888999999998325453166751--2778879
Q gi|254781120|r 252 NIL---VPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP--FNPWPGC 324 (384)
Q Consensus 252 ~~l---mPi~~~~~l~~l~~a~~~y~~~~~~r--rit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp--~N~~~~~ 324 (384)
T Consensus 140 ~~~h~~~P~--K~~~~r-L~~ie~Ah~-l-gIptTatmL~G~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t 214 (336)
T PRK06245 140 ETVHRHSPG--KDPELR-LETIEWAGE-L-KIPFTTGLLIGIGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGI 214 (336)
T ss_pred HHHCCCCCC--CCHHHH-HHHHHHHHH-C-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 763044898--788999-999999998-3-99722024520669999999999999998863497579950687789875
Q ss_pred CC---CCCCHHHHH---HHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 88---688989999---999999987987854158777100
Q gi|254781120|r 325 EY---LCSDQKDIV---TFSECIKRSGYSSPIRTPRGLDIL 359 (384)
Q Consensus 325 ~~---~~~~~~~i~---~F~~~L~~~Gi~~tiR~srG~DI~ 359 (384)
T Consensus 215 ~m~~~~~~~~~e~l~~iAvARiiL~~~i~IQappnL~~~~~ 255 (336)
T PRK06245 215 PMENHPEPSPEEMPRVVALARLILPPDISIQVPPNLVDDTG 255 (336)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 33469997999999999999996699857976986785578