HHsearch alignment for GI: 254781120 and conserved domain: TIGR00238

>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739 This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=95.01  E-value=0.23  Score=31.21  Aligned_cols=203  Identities=15%  Similarity=0.245  Sum_probs=117.8

Q ss_pred             EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCC--CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             544302346773389884065100486132244--111027898999999999999722203444434344454586110
Q gi|254781120|r  103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT--QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS  180 (384)
Q Consensus       103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~--~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  180 (384)
T Consensus       122 ~p~~~~~--y~~~~~~~~~~~c~~~c~yc~~~w~~~~~~~~~~~g~p~~~~~~~~~~~~~~---------------~~~~  184 (357)
T TIGR00238       122 VPGLTHR--YPNRALFLPKGGCAVNCRYCFRNWLVRHFPYKEGPGNPKKKWEAALDYIAEH---------------PELE  184 (357)
T ss_pred             CCHHHHH--HHCEEEEEECCCCCHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHC---------------CCHH
T ss_conf             1024442--1001346641664022333332001100451003677367899999987404---------------1023


Q ss_pred             EEEEECCCCHHHH----HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCC
Q ss_conf             1441014544542----899999960376845778775368885138741478860125651799840455113444123
Q gi|254781120|r  181 NIVMMGMGEPLCN----FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP  256 (384)
Q Consensus       181 NiVfMGmGEPl~N----~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmP  256 (384)
T Consensus       185 ~~~~~g-gdp~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------  253 (357)
T TIGR00238       185 EVLFSG-GDPLLLKDHELEWLLKELESIPHLEGLRIGTRLPVVIPQRITDELCELLGKFELPLLLVTHIN----------  253 (357)
T ss_pred             HHEEEC-CCCCCCCHHHHHHHHHHHHHCCCHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHEEECCC----------
T ss_conf             320107-876310057899999987533401002202322011004668999998753322110000024----------


Q ss_pred             CCCCCCH-HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC------CCCCCCCC
Q ss_conf             3125789-9999999999862589459999987269998889999999983254531667512778------87988688
Q gi|254781120|r  257 INRKYPL-EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW------PGCEYLCS  329 (384)
Q Consensus       257 i~~~~~l-~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~------~~~~~~~~  329 (384)
T Consensus       254 --~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~pyy~~~~~~~~g~~~~~~~  325 (357)
T TIGR00238       254 --HCNEITEEFAEAVEKLR-TV-GVTLLNQSVLLRGVNDSAPILAKLSDALFKV----GVLPYYLHLLDGVEGAGHFLVP  325 (357)
T ss_pred             --CCHHCCHHHHHHHHHHH-HC-CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH----CCCHHHHHHHCHHHHHHHHHHH
T ss_conf             --30110378999999887-52-6500001322111011157899988878763----0102322220001101122201


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             989999999999
Q gi|254781120|r  330 DQKDIVTFSECI  341 (384)
Q Consensus       330 ~~~~i~~F~~~L  341 (384)
T Consensus       326 ~~~~~~~~~~~~  337 (357)
T TIGR00238       326 DAEALQIVKELA  337 (357)
T ss_pred             HHHHHHHHHHHH
T ss_conf             678899998887