HHsearch alignment for GI: 254781120 and conserved domain: TIGR00238
>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739 This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=95.01 E-value=0.23 Score=31.21 Aligned_cols=203 Identities=15% Similarity=0.245 Sum_probs=117.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCC--CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 544302346773389884065100486132244--111027898999999999999722203444434344454586110
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT--QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~--~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 180 (384)
T Consensus 122 ~p~~~~~--y~~~~~~~~~~~c~~~c~yc~~~w~~~~~~~~~~~g~p~~~~~~~~~~~~~~---------------~~~~ 184 (357)
T TIGR00238 122 VPGLTHR--YPNRALFLPKGGCAVNCRYCFRNWLVRHFPYKEGPGNPKKKWEAALDYIAEH---------------PELE 184 (357)
T ss_pred CCHHHHH--HHCEEEEEECCCCCHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHC---------------CCHH
T ss_conf 1024442--1001346641664022333332001100451003677367899999987404---------------1023
Q ss_pred EEEEECCCCHHHH----HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCC
Q ss_conf 1441014544542----899999960376845778775368885138741478860125651799840455113444123
Q gi|254781120|r 181 NIVMMGMGEPLCN----FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 (384)
Q Consensus 181 NiVfMGmGEPl~N----~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmP 256 (384)
T Consensus 185 ~~~~~g-gdp~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------- 253 (357)
T TIGR00238 185 EVLFSG-GDPLLLKDHELEWLLKELESIPHLEGLRIGTRLPVVIPQRITDELCELLGKFELPLLLVTHIN---------- 253 (357)
T ss_pred HHEEEC-CCCCCCCHHHHHHHHHHHHHCCCHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHEEECCC----------
T ss_conf 320107-876310057899999987533401002202322011004668999998753322110000024----------
Q ss_pred CCCCCCH-HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC------CCCCCCCC
Q ss_conf 3125789-9999999999862589459999987269998889999999983254531667512778------87988688
Q gi|254781120|r 257 INRKYPL-EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW------PGCEYLCS 329 (384)
Q Consensus 257 i~~~~~l-~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~------~~~~~~~~ 329 (384)
T Consensus 254 --~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~pyy~~~~~~~~g~~~~~~~ 325 (357)
T TIGR00238 254 --HCNEITEEFAEAVEKLR-TV-GVTLLNQSVLLRGVNDSAPILAKLSDALFKV----GVLPYYLHLLDGVEGAGHFLVP 325 (357)
T ss_pred --CCHHCCHHHHHHHHHHH-HC-CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH----CCCHHHHHHHCHHHHHHHHHHH
T ss_conf --30110378999999887-52-6500001322111011157899988878763----0102322220001101122201
Q ss_pred CHHHHHHHHHHH
Q ss_conf 989999999999
Q gi|254781120|r 330 DQKDIVTFSECI 341 (384)
Q Consensus 330 ~~~~i~~F~~~L 341 (384)
T Consensus 326 ~~~~~~~~~~~~ 337 (357)
T TIGR00238 326 DAEALQIVKELA 337 (357)
T ss_pred HHHHHHHHHHHH
T ss_conf 678899998887