HHsearch alignment for GI: 254781120 and conserved domain: TIGR02493
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=99.38 E-value=6.3e-11 Score=101.96 Aligned_cols=213 Identities=21% Similarity=0.351 Sum_probs=160.5
Q ss_pred EEEEEECCCCCCCEEEEEECCCCHHCCCCCC---CCCCHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5544302346773389884065100486132---2441110-27898999999999999722203444434344454586
Q gi|254781120|r 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 (384)
Q Consensus 102 ~IEsVlip~~~r~T~CvSSQvGC~m~C~FCa---Tg~~G~~-RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~ 177 (384)
T Consensus 4 S~Es~G~vDGPG~RFvvFm-qGC~lRC~YChNPDTW~~~~~G~~~t~~el~~e~~~yk~f~~~sGGG------------- 69 (243)
T TIGR02493 4 SVESMGTVDGPGIRFVVFM-QGCPLRCQYCHNPDTWDLKKGGTEVTVEELIKEVKSYKDFFKASGGG------------- 69 (243)
T ss_pred CEEECCCCCCCCCEEEEEE-CCHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCC-------------
T ss_conf 2353452238850687754-35367753058987433588781207899999999899887207995-------------
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC----CCHH----HHHHHCCCCCCEEEEEECCCCH
Q ss_conf 1101441014544542899999960376845778775368885138----7414----7886012565179984045511
Q gi|254781120|r 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG----FVPN----IARVGEEIGVMLAISLHAVSND 249 (384)
Q Consensus 178 ~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~G----i~p~----I~~la~~~~~~LAiSLha~~~~ 249 (384)
T Consensus 70 ----vT~SG-GEPllQ~~F~~~~f~~cK~~~Gi-----HTclDT~GGCftf~~~~~~~~~~lLe~TDLvL-LDiK~~~~~ 138 (243)
T TIGR02493 70 ----VTVSG-GEPLLQPEFVLELFKACKKELGI-----HTCLDTSGGCFTFLGGFTEAADELLEVTDLVL-LDIKHIDPE 138 (243)
T ss_pred ----EEEEC-CCCCCCHHHHHHHHHHHHHHCCC-----EEEEECCCCHHHHHCCHHHHHHHHHHCCCEEE-EECCCCCHH
T ss_conf ----89868-95020169999999999985698-----38874488343341212489997510058788-623436812
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC---EEEEEECCCC-----
Q ss_conf 34441233125789999999999986258945999998726999888999999998325453---1667512778-----
Q gi|254781120|r 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPW----- 321 (384)
Q Consensus 250 ~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~---~vNLIp~N~~----- 321 (384)
T Consensus 139 ~y~~LTg~---~~~~ptl~Fa~~L~-~~-~kP~WiRYVlVPGyTD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KW 213 (243)
T TIGR02493 139 KYKKLTGV---KSLEPTLEFAKYLA-KR-NKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKW 213 (243)
T ss_pred HCCCCCCC---CCCHHHHHHHHHHH-HC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
T ss_conf 40001456---77524589999999-65-898899998658877998999999999974699279986568860211038
Q ss_pred -------CCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -------87988688989999999999987
Q gi|254781120|r 322 -------PGCEYLCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 322 -------~~~~~~~~~~~~i~~F~~~L~~~ 344 (384)
T Consensus 214 e~~g~~Y~L~~~~~p~~e~~~~~~~~~~~~ 243 (243)
T TIGR02493 214 EALGIEYKLEGVKPPNKEQLERIKEIFKEY 243 (243)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 766897588888987989999999997329