HHsearch alignment for GI: 254781120 and conserved domain: TIGR02494
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=98.60 E-value=2.1e-06 Score=68.51 Aligned_cols=186 Identities=20% Similarity=0.426 Sum_probs=129.0
Q ss_pred CCCCCCHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 3224411102-789899999999999972220344443434445458611014410145445428999999603768457
Q gi|254781120|r 131 CYTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 (384)
Q Consensus 131 CaTg~~G~~R-NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g 209 (384)
T Consensus 98 Cp~~Al~~~G~~~tV~ev~~~~~~D~~fY~~SGGG--------------vT---lSG-GEPl~Q~eF~~~LL~~c~-~~g 158 (305)
T TIGR02494 98 CPSGALEIVGKEMTVEEVMRVVLRDSIFYRNSGGG--------------VT---LSG-GEPLLQPEFALALLKACR-ERG 158 (305)
T ss_pred CCCHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCE--------------EE---ECC-CCCCCCHHHHHHHHHHHH-HCC
T ss_conf 84006420245148899999998655666513990--------------67---348-711401589999999997-589
Q ss_pred CCCCCCEEEEEECCCCHH--HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEE
Q ss_conf 787753688851387414--78860125651799840455113444123312578999999999998625-8-9459999
Q gi|254781120|r 210 LSFSKRRITLSTSGFVPN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS-N-ARRITFE 285 (384)
Q Consensus 210 ~~~~~r~ITvST~Gi~p~--I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~-~-~rrit~E 285 (384)
T Consensus 159 ih-----TAvET~gft~~~~~~~~~~~~DLfL-~DiK~~D~~~H~~~tG~----~N~~IL~NL~~L~~~~~~GG~~v~iR 228 (305)
T TIGR02494 159 IH-----TAVETSGFTPWETIEKVLPYVDLFL-YDIKHLDDERHKEVTGV----DNELILENLEALLAAGKDGGKNVVIR 228 (305)
T ss_pred CC-----EEECCCCCCCHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHCCC----CHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 94-----6760556888899998888776998-72641180120553389----83789999999997178899558998
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-C---CEEEEEECCCC-------------CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 987269998889999999983254-5---31667512778-------------879886889899999999999879
Q gi|254781120|r 286 YVMLKGINDSPRDALNLIKILKGI-P---AKINLIPFNPW-------------PGCEYLCSDQKDIVTFSECIKRSG 345 (384)
Q Consensus 286 Yvli~gvNDs~e~a~~L~~ll~~~-~---~~vNLIp~N~~-------------~~~~~~~~~~~~i~~F~~~L~~~G 345 (384)
T Consensus 229 ~PvIpG~Nds~~~i~a~~~f~~~~~~~N~~~i~LLPyH~lG~~KY~~LG~~~~~~~~~~~~~~e~~~~l~~~~~~~G 305 (305)
T TIGR02494 229 IPVIPGFNDSEENIEAIAEFLRKLLPGNVKEIDLLPYHRLGENKYRQLGREYYPDSEIPDPAEEQLLELKEIFEKKG 305 (305)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 72048989898999999999998517897656744860556799985588677788888866678999999999629