HHsearch alignment for GI: 254781120 and conserved domain: TIGR02495
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=96.66 E-value=0.0026 Score=45.59 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=107.2
Q ss_pred CCCCCCEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 34677338988406510048613224411102789899999999999972220344443434445458611014410145
Q gi|254781120|r 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 (384)
Q Consensus 109 p~~~r~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmG 188 (384)
T Consensus 12 D~PG~~-a~~iF~~GCn~~CpyCHN~~~-~~~~~~~~~~~~e~~--~~~L~--------------~R~~ll~gVVitG-G 72 (220)
T TIGR02495 12 DYPGKL-AFTIFFQGCNLKCPYCHNSEL-LIPRKGSGEIELEEL--LEFLR--------------RRQGLLDGVVITG-G 72 (220)
T ss_pred EECCCE-EEEEEECCCCCCCCCCCCCCC-HHHHCCCCCCCHHHH--HHHHH--------------HCCCCEEEEEEEC-C
T ss_conf 318853-688870278899878888764-002005761027779--99987--------------3134210578728-7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHCC-CCCCEEEEEECCCCHHHHHHCCCCCCC-----
Q ss_conf 445428999999603768457787753688851387414-7886012-565179984045511344412331257-----
Q gi|254781120|r 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY----- 261 (384)
Q Consensus 189 EPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~~-~~~~LAiSLha~~~~~R~~lmPi~~~~----- 261 (384)
T Consensus 73 EptlQ~~eL~d~~~~v~~nlGf~vk-----LdTNG~~P~~L~~ll~~gLvD~va~D~Kap~~-~y~~~~G~~~~~~~~~t 146 (220)
T TIGR02495 73 EPTLQAGELGDFLREVRENLGFEVK-----LDTNGSNPRVLEELLEEGLVDYVAMDVKAPPE-KYGELYGREKNAAKKET 146 (220)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEE-----EECCCCCHHHHHHHHHCCCCCEEEEECCCCHH-HCCEEECCCCCCCCCCC
T ss_conf 5323677789999999986592785-----60678867899999860487578750147865-67400063321003532
Q ss_pred ------CH----HHHHHHHHHHHHHCCC-CEEEEEE--EEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf ------89----9999999999862589-4599999--872699988899999999832545
Q gi|254781120|r 262 ------PL----EMLIDACRHYPGLSNA-RRITFEY--VMLKGINDSPRDALNLIKILKGIP 310 (384)
Q Consensus 262 ------~l----~~l~~a~~~y~~~~~~-rrit~EY--vli~gvNDs~e~a~~L~~ll~~~~ 310 (384)
T Consensus 147 nisPsrtPe~l~~~~~~SlEi-l~~s~GCGGi~fE~RTTV~~~~~~Geed~~ei~~~i~~~~ 207 (220)
T TIGR02495 147 NISPSRTPEKLLKNILKSLEI-LLESGGCGGIEFELRTTVVRGLLDGEEDLAEIATRIKENG 207 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCEEECCCCHHHHCCCHHHHHHHHHHCCCC
T ss_conf 468775658999998755675-5424786886532445655254165278999997632244