HHsearch alignment for GI: 254781120 and conserved domain: TIGR03279
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.58 E-value=0.0048 Score=43.60 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=60.7
Q ss_pred EEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC
Q ss_conf 68885138741478860125651799840455113444123312578999999999998625894599999872699988
Q gi|254781120|r 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 (384)
Q Consensus 216 ~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs 295 (384)
T Consensus 120 fiTLTNl~-e~D~~RIi~~rLSPl~ISVHaT~pelR~~mL~-n~--~ag~il~~l~~L~~-~-gI~~h~QIVLCPGiNDG 193 (433)
T TIGR03279 120 YLTLTNLP-PAEWQRIEQLRLSPLYVSVHATEPSLRARLLK-NP--RAGLILEQLKWFQE-R-RLQLHAQVVVCPGINDG 193 (433)
T ss_pred EEEEECCC-HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-CC--CHHHHHHHHHHHHH-C-CCEEEEEEEECCCCCCH
T ss_conf 57651799-89999999825786389986399899999876-99--57899999999997-6-98798479987996766
Q ss_pred HHHHHHHHHHHC
Q ss_conf 899999999832
Q gi|254781120|r 296 PRDALNLIKILK 307 (384)
Q Consensus 296 ~e~a~~L~~ll~ 307 (384)
T Consensus 194 ~~L~rTi~DL~~ 205 (433)
T TIGR03279 194 KHLERTLRDLAQ 205 (433)
T ss_pred HHHHHHHHHHHH
T ss_conf 999989999998