HHsearch alignment for GI: 254781120 and conserved domain: TIGR03550
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=95.96 E-value=0.058 Score=35.59 Aligned_cols=206 Identities=15% Similarity=0.196 Sum_probs=88.0
Q ss_pred CHHCCCCCCCCCC-HH--HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 1004861322441-11--02789899999999999972220344443434445458611014410145445428999999
Q gi|254781120|r 124 CSLTCSFCYTGTQ-KL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 (384)
Q Consensus 124 C~m~C~FCaTg~~-G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~a 200 (384)
T Consensus 14 C~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~ea~~~--------------------G~tEv~i~gG~~P~~~~~~~~~~ 73 (322)
T TIGR03550 14 CRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAA--------------------GCTEALFTFGEKPEERYPEAREW 73 (322)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCEEEEECCCCCHHHHHHHHHHH
T ss_conf 3176967885168999887747999999999999977--------------------98799964886800349999999
Q ss_pred HHCCCCCCC----CCCCCCE------EEEEECCCC--HHHHHHHC-C--CCCCEEEEEECCCCHHHHHHCCCCCCCCHHH
Q ss_conf 603768457----7877536------888513874--14788601-2--5651799840455113444123312578999
Q gi|254781120|r 201 LSIASDSMG----LSFSKRR------ITLSTSGFV--PNIARVGE-E--IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 (384)
Q Consensus 201 i~~l~~~~g----~~~~~r~------ITvST~Gi~--p~I~~la~-~--~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~ 265 (384)
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~aglg~~~e~~ae~l~~~vr~~~~P~--K~~~~~ 151 (322)
T TIGR03550 74 LAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPG--KDPAVR 151 (322)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCHHHH
T ss_conf 998488617899999999999863356544767688999998763186266678888875322235677999--887999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC----CEEEEEECC--CCCCCC---CCCCCHHHH--
Q ss_conf 999999998625894599999872699988899999999832545----316675127--788798---868898999--
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP----AKINLIPFN--PWPGCE---YLCSDQKDI-- 334 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~----~~vNLIp~N--~~~~~~---~~~~~~~~i-- 334 (384)
T Consensus 152 -l~i~~~Ah~----lGi~ttaTml~GhiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~~~~s~~e~Lr 226 (322)
T TIGR03550 152 -LETIEDAGR----LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLR 226 (322)
T ss_pred -HHHHHHHHH----CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf -999999998----599615123420469999999999999987865296579962676689986455699989999999
Q ss_pred -HHHHHHHHHCCCEEEECCCCCC
Q ss_conf -9999999987987854158777
Q gi|254781120|r 335 -VTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 335 -~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
T Consensus 227 ~iAvaRl~Ldn~~~Iqa~~~lg~ 249 (322)
T TIGR03550 227 TVAVARLILPPDISIQVPPNLNR 249 (322)
T ss_pred HHHHHHHHCCCCCEEEECCCCCH
T ss_conf 99999997599972860885675