HHsearch alignment for GI: 254781120 and conserved domain: TIGR03550

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=95.96  E-value=0.058  Score=35.59  Aligned_cols=206  Identities=15%  Similarity=0.196  Sum_probs=88.0

Q ss_pred             CHHCCCCCCCCCC-HH--HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             1004861322441-11--02789899999999999972220344443434445458611014410145445428999999
Q gi|254781120|r  124 CSLTCSFCYTGTQ-KL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS  200 (384)
Q Consensus       124 C~m~C~FCaTg~~-G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~a  200 (384)
T Consensus        14 C~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~ea~~~--------------------G~tEv~i~gG~~P~~~~~~~~~~   73 (322)
T TIGR03550        14 CRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAA--------------------GCTEALFTFGEKPEERYPEAREW   73 (322)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCEEEEECCCCCHHHHHHHHHHH
T ss_conf             3176967885168999887747999999999999977--------------------98799964886800349999999


Q ss_pred             HHCCCCCCC----CCCCCCE------EEEEECCCC--HHHHHHHC-C--CCCCEEEEEECCCCHHHHHHCCCCCCCCHHH
Q ss_conf             603768457----7877536------888513874--14788601-2--5651799840455113444123312578999
Q gi|254781120|r  201 LSIASDSMG----LSFSKRR------ITLSTSGFV--PNIARVGE-E--IGVMLAISLHAVSNDLRNILVPINRKYPLEM  265 (384)
Q Consensus       201 i~~l~~~~g----~~~~~r~------ITvST~Gi~--p~I~~la~-~--~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~  265 (384)
T Consensus        74 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~aglg~~~e~~ae~l~~~vr~~~~P~--K~~~~~  151 (322)
T TIGR03550        74 LAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPG--KDPAVR  151 (322)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCHHHH
T ss_conf             998488617899999999999863356544767688999998763186266678888875322235677999--887999


Q ss_pred             HHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC----CEEEEEECC--CCCCCC---CCCCCHHHH--
Q ss_conf             999999998625894599999872699988899999999832545----316675127--788798---868898999--
Q gi|254781120|r  266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP----AKINLIPFN--PWPGCE---YLCSDQKDI--  334 (384)
Q Consensus       266 l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~----~~vNLIp~N--~~~~~~---~~~~~~~~i--  334 (384)
T Consensus       152 -l~i~~~Ah~----lGi~ttaTml~GhiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~~~~s~~e~Lr  226 (322)
T TIGR03550       152 -LETIEDAGR----LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLR  226 (322)
T ss_pred             -HHHHHHHHH----CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             -999999998----599615123420469999999999999987865296579962676689986455699989999999


Q ss_pred             -HHHHHHHHHCCCEEEECCCCCC
Q ss_conf             -9999999987987854158777
Q gi|254781120|r  335 -VTFSECIKRSGYSSPIRTPRGL  356 (384)
Q Consensus       335 -~~F~~~L~~~Gi~~tiR~srG~  356 (384)
T Consensus       227 ~iAvaRl~Ldn~~~Iqa~~~lg~  249 (322)
T TIGR03550       227 TVAVARLILPPDISIQVPPNLNR  249 (322)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCH
T ss_conf             99999997599972860885675