HHsearch alignment for GI: 254781120 and conserved domain: smart00729
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=98.86 E-value=2.4e-07 Score=75.49 Aligned_cols=188 Identities=18% Similarity=0.314 Sum_probs=120.3
Q ss_pred EEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH-HH
Q ss_conf 8840651004861322441-110278989999999999997222034444343444545861101441014544542-89
Q gi|254781120|r 118 VSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN-FD 195 (384)
Q Consensus 118 vSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N-~d 195 (384)
T Consensus 5 ~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~ 68 (216)
T smart00729 5 YIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEK---------------E-ILVGTVFIGGGTPTLLSPE 68 (216)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---------------C-CCCEEEEECCCCCCCCCHH
T ss_conf 99987819848429817588964575999999999999970897---------------6-5300110024689888999
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEEC-CCC-H-HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999996037684577877536888513-874-1-4788601256517998404551134441233125789999999999
Q gi|254781120|r 196 NVKKSLSIASDSMGLSFSKRRITLSTS-GFV-P-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 196 ~v~~ai~~l~~~~g~~~~~r~ITvST~-Gi~-p-~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
T Consensus 69 ~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~---i~k~~~~~~~~~~i~~ 144 (216)
T smart00729 69 QLEELLEAIREILGLA-DDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKA---INRGHTVEDVLEAVEK 144 (216)
T ss_pred HHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH---HCCCCCHHHHHHHHHH
T ss_conf 9999999999851435-62699997060215899999999849986666735507899987---1799999999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCC
Q ss_conf 986258945999998726999888999999998325453-1667512778879886
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~~~~ 327 (384)
T Consensus 145 ~~-~~g~~~~~~-~~i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~ 198 (216)
T smart00729 145 LR-EAGPIKVST-DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLA 198 (216)
T ss_pred HH-HHCCCEEEE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHH
T ss_conf 99-858936877-5786799999999999999999469198998748756998466