Query gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 384 No_of_seqs 137 out of 1593 Neff 5.3 Searched_HMMs 33803 Date Wed Jun 1 23:04:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781120.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2yx0_A Radical SAM enzyme; pr 99.9 2.2E-21 6.6E-26 178.9 15.5 307 38-368 1-329 (342) 2 >2z2u_A UPF0026 protein MJ0257 99.8 8.2E-20 2.4E-24 167.3 12.3 285 56-368 2-303 (311) 3 >3c8f_A Pyruvate formate-lyase 99.7 5E-15 1.5E-19 131.8 17.0 217 103-350 9-245 (245) 4 >2a5h_A L-lysine 2,3-aminomuta 99.6 1.3E-14 3.7E-19 128.9 11.7 224 110-366 17-245 (248) 5 >3can_A Pyruvate-formate lyase 99.5 5.5E-12 1.6E-16 109.3 15.2 160 179-351 4-181 (182) 6 >3iix_A Biotin synthetase, put 99.2 1.5E-09 4.4E-14 91.3 14.3 198 113-342 52-257 (348) 7 >1tv8_A MOAA, molybdenum cofac 99.1 1.9E-08 5.6E-13 83.1 18.7 177 113-321 13-199 (313) 8 >1r30_A Biotin synthase; SAM r 98.9 5.7E-08 1.7E-12 79.6 13.3 201 113-347 65-279 (369) 9 >1olt_A Oxygen-independent cop 98.8 5.4E-07 1.6E-11 72.3 15.8 216 110-348 48-284 (364) 10 >2qgq_A Protein TM_1862; alpha 96.6 0.0035 1E-07 44.1 5.1 46 111-156 1-47 (112) 11 >2qgq_A Protein TM_1862; alpha 92.1 1.1 3.2E-05 25.7 10.0 86 238-328 4-91 (122) 12 >1nrz_A PTS system, sorbose-sp 77.2 5.7 0.00017 20.4 6.0 109 238-357 30-149 (164) 13 >2dsj_A Pyrimidine-nucleoside 76.3 2.5 7.4E-05 23.0 3.1 46 136-207 40-89 (144) 14 >3bgv_A MRNA CAP guanine-N7 me 63.8 7.8 0.00023 19.3 3.4 90 179-277 119-209 (260) 15 >3eye_A PTS system N-acetylgal 60.5 12 0.00036 17.9 5.2 108 238-357 35-154 (168) 16 >3cux_A Malate synthase; TIM b 58.0 8 0.00024 19.3 2.6 30 36-66 57-86 (134) 17 >1ble_A Fructose permease; pho 57.4 14 0.00041 17.5 6.4 108 239-357 32-150 (163) 18 >1vsq_C Mannose-specific phosp 57.1 14 0.00041 17.5 6.6 109 238-357 33-152 (165) 19 >1m1n_B Nitrogenase molybdenum 54.4 11 0.00034 18.1 2.9 33 287-319 10-42 (124) 20 >2dl0_A SAM and SH3 domain-con 53.6 15 0.00045 17.2 3.5 53 3-64 12-64 (97) 21 >2dgk_A GAD-beta, GADB, glutam 53.4 5.7 0.00017 20.3 1.3 55 128-189 8-62 (144) 22 >1w5d_A Penicillin-binding pro 51.1 17 0.00051 16.8 4.5 65 292-356 31-108 (125) 23 >2zkz_A Transcriptional repres 47.9 7.1 0.00021 19.6 1.0 79 1-90 1-82 (99) 24 >2oap_1 GSPE-2, type II secret 46.7 20 0.00059 16.4 4.5 38 8-56 38-75 (94) 25 >2gqw_A Ferredoxin reductase; 45.6 21 0.00061 16.2 5.6 76 262-350 12-87 (116) 26 >2w8t_A SPT, serine palmitoylt 45.3 20 0.00059 16.3 3.0 100 143-274 31-130 (145) 27 >1p7t_A MSG, malate synthase G 44.5 15 0.00045 17.2 2.3 34 36-70 57-90 (148) 28 >3iar_A Adenosine deaminase; p 44.3 21 0.00064 16.1 7.4 93 253-351 53-151 (179) 29 >3b6h_A Prostacyclin synthase; 42.6 4 0.00012 21.5 -0.9 34 79-118 6-39 (39) 30 >1zco_A 2-dehydro-3-deoxyphosp 38.8 26 0.00076 15.5 7.1 80 184-275 68-155 (262) 31 >1iv0_A Hypothetical protein; 38.4 26 0.00077 15.5 5.4 61 293-354 34-94 (98) 32 >2e5a_A Lipoyltransferase 1; l 37.9 23 0.00069 15.8 2.4 13 262-274 197-209 (246) 33 >1n8i_A Probable malate syntha 37.8 23 0.00067 15.9 2.3 30 36-67 63-93 (162) 34 >3cuz_A MSA, malate synthase A 37.2 21 0.00062 16.2 2.1 12 36-48 57-68 (134) 35 >1b4f_A EPHB2; SAM domain, EPH 36.5 28 0.00082 15.3 3.4 51 5-64 2-52 (82) 36 >2oa4_A SIR5; structure, struc 36.4 28 0.00083 15.2 3.0 34 9-46 59-97 (101) 37 >3h8m_A Ephrin type-A receptor 36.0 28 0.00084 15.2 3.6 52 4-64 15-66 (90) 38 >1nu0_A Hypothetical protein Y 34.6 30 0.00088 15.0 2.8 63 297-360 40-103 (138) 39 >1moq_A Glucosamine 6-phosphat 34.6 30 0.00088 15.0 2.6 98 135-233 5-120 (210) 40 >1wyu_B Glycine dehydrogenase 33.9 31 0.0009 15.0 3.1 49 295-343 46-99 (116) 41 >2eao_A Ephrin type-B receptor 33.5 31 0.00091 14.9 3.5 52 5-65 13-64 (99) 42 >3dk9_A Grase, GR, glutathione 32.5 32 0.00095 14.8 5.9 46 300-348 15-60 (62) 43 >1gxl_A SMC, chromosome segreg 32.3 32 0.00095 14.8 3.7 33 292-324 34-67 (70) 44 >3hhl_A RPA0582; alpha-beta-ba 32.0 33 0.00097 14.7 6.7 73 292-364 6-85 (143) 45 >1s9r_A Arginine deiminase; hy 31.8 21 0.00063 16.1 1.4 37 314-350 33-73 (93) 46 >2dn5_A General transcription 31.7 29 0.00086 15.1 2.1 35 322-356 51-86 (89) 47 >3f9t_A TDC, L-tyrosine decarb 31.5 19 0.00058 16.4 1.2 26 129-160 8-33 (107) 48 >3klj_A NAD(FAD)-dependent deh 30.9 34 0.001 14.6 4.7 51 299-351 33-83 (102) 49 >1b0x_A Protein (EPHA4 recepto 29.1 36 0.0011 14.4 3.4 51 6-65 18-68 (94) 50 >2k4p_A Phosphatidylinositol-3 28.7 36 0.0011 14.5 2.1 50 6-64 18-67 (86) 51 >1t5i_A C_terminal domain of A 28.7 37 0.0011 14.4 3.6 57 248-315 4-60 (172) 52 >1esx_A VPR protein; helix, am 28.4 37 0.0011 14.3 2.6 54 14-72 23-76 (96) 53 >3a3d_A PBP4, penicillin-bindi 28.4 37 0.0011 14.3 6.8 69 288-356 24-106 (121) 54 >1qgu_B Protein (nitrogenase m 28.0 38 0.0011 14.3 2.9 33 287-319 12-44 (83) 55 >2zg6_A Putative uncharacteriz 27.9 37 0.0011 14.3 2.1 66 13-83 9-76 (86) 56 >1nvm_A HOA, 4-hydroxy-2-oxova 27.9 25 0.00075 15.6 1.2 53 191-248 145-204 (273) 57 >1m6i_A Programmed cell death 27.9 38 0.0011 14.3 5.2 79 262-349 14-92 (126) 58 >3ble_A Citramalate synthase f 27.4 39 0.0011 14.2 6.1 119 136-273 124-268 (337) 59 >2kg5_A ARF-GAP, RHO-GAP domai 26.9 39 0.0012 14.1 3.0 50 6-64 18-67 (100) 60 >1x40_A ARAP2; ASAP-related pr 26.5 40 0.0012 14.1 3.3 53 3-64 4-56 (91) 61 >3h5q_A PYNP, pyrimidine-nucle 26.3 40 0.0012 14.1 2.8 45 137-207 40-88 (247) 62 >1mio_B Nitrogenase molybdenum 26.1 41 0.0012 14.0 2.8 31 288-319 66-96 (160) 63 >2hqm_A GR, grase, glutathione 26.0 41 0.0012 14.0 5.5 48 299-349 14-61 (64) 64 >2f48_A Diphosphate--fructose- 25.8 29 0.00086 15.1 1.2 67 287-354 171-248 (283) 65 >1j1d_C Troponin I, TNI; THIN 25.3 42 0.0012 13.9 3.5 70 6-89 52-128 (133) 66 >2whl_A Beta-mannanase, baman5 24.4 43 0.0013 13.8 4.4 25 327-351 194-218 (258) 67 >2a2p_A Selenoprotein M, SELM 23.2 46 0.0013 13.7 2.6 19 253-272 70-88 (129) 68 >1d2v_C Myeloperoxidase; heme- 22.6 47 0.0014 13.6 2.9 55 9-69 11-68 (87) 69 >1qoy_A Hemolysin E; toxin, me 22.4 37 0.0011 14.4 1.2 40 241-286 276-315 (318) 70 >2nx9_A Oxaloacetate decarboxy 22.1 48 0.0014 13.5 2.7 144 179-347 142-317 (353) 71 >1mrb_A CD7 metallothionein-2A 22.0 29 0.00087 15.1 0.6 15 122-136 5-19 (31) 72 >1xqa_A Glyoxalase/bleomycin r 21.7 49 0.0014 13.5 1.9 30 323-352 5-34 (55) 73 >3dfz_A SIRC, precorrin-2 dehy 21.6 42 0.0012 13.9 1.4 26 207-232 6-31 (97) 74 >3kka_C Ephrin type-A receptor 21.2 50 0.0015 13.4 3.4 52 4-64 11-62 (86) 75 >2qac_A Myosin A tail domain i 21.2 32 0.00095 14.8 0.7 42 12-55 22-63 (67) 76 >2hg4_A DEBS, 6-deoxyerythrono 21.2 50 0.0015 13.4 2.1 50 300-350 14-63 (71) 77 >1uz3_A EMSY protein; chromati 21.2 32 0.00096 14.8 0.7 41 6-52 7-47 (102) 78 >3iab_B Ribonucleases P/MRP pr 21.1 50 0.0015 13.4 1.7 65 147-230 41-105 (140) 79 >2a4h_A Selenoprotein SEP15; r 21.1 42 0.0012 14.0 1.3 18 255-273 78-95 (126) 80 >1f8m_A Isocitrate lyase, ICL; 20.9 50 0.0015 13.3 5.4 84 260-351 263-347 (429) 81 >3eol_A Isocitrate lyase; seat 20.9 48 0.0014 13.5 1.6 200 140-349 107-344 (348) 82 >1pjq_A CYSG, siroheme synthas 20.7 51 0.0015 13.3 1.9 19 213-231 12-30 (41) 83 >1bqc_A Protein (beta-mannanas 20.6 14 0.00042 17.4 -1.2 12 236-247 188-199 (302) 84 >1ucv_A Ephrin type-A receptor 20.3 52 0.0015 13.3 3.2 45 11-64 4-48 (81) No 1 >>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:) Probab=99.88 E-value=2.2e-21 Score=178.86 Aligned_cols=307 Identities=12% Similarity=0.037 Sum_probs=232.9 Q ss_pred HHHHH-HHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEECC------C Q ss_conf 99999-8717999678334788999998620225787023465314544303775247777898155443023------4 Q gi|254781120|r 38 IWKWI-YVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------E 110 (384) Q Consensus 38 I~~wi-y~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~DGT~K~L~~l~d~~~~dg~~IEsVlip------~ 110 (384) ||+|+ +++++.+|++|++||+..++.|.+... .....|++.|++..+.+ ...++...+. . T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~e~l~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 67 (342) T 2yx0_A 1 MMEMITIKPGKITVQANPNMPKEVAELFRKQHY--------EIVGRHSGVKLCHWLKK-----SLTEGRFCYKQKFYGIH 67 (342) T ss_dssp ----------CCCCCBCCSSCHHHHHHHHHTTC--------EEEBTTEEECCCTTHHH-----HHHHCCCCHHHHHHCCC T ss_pred CCCCEEECCCCCHHHHCCCCCHHHHHHHHHCCC--------EEEECCCCEEECHHHHH-----HHCCCCCCCCCCCCCCC T ss_conf 965255334400353088999899999987798--------78715766677540398-----83779964550012634 Q ss_pred CCCCEEEEEECCCCHHCCCCCCCCC------CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 6773389884065100486132244------1110278989999999999997222034444343444545861101441 Q gi|254781120|r 111 KSRGTLCVSSQVGCSLTCSFCYTGT------QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 (384) Q Consensus 111 ~~r~T~CvSSQvGC~m~C~FCaTg~------~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVf 184 (384) ..+..+++...-||+++|.||.... .+-.|..+..++++++..+.+...................+..+..+++ T Consensus 68 ~~~~~~~i~~t~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342) T 2yx0_A 68 SHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAI 147 (342) T ss_dssp GGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEE T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEE T ss_conf 64448876841252777988999887777755545557989999999999999876532675302677775148757999 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHH---CCCCCCEEEEEECCCCHHHHHHCCCCCCC Q ss_conf 014544542899999960376845778775368885138741478860---12565179984045511344412331257 Q gi|254781120|r 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG---EEIGVMLAISLHAVSNDLRNILVPINRKY 261 (384) Q Consensus 185 MGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la---~~~~~~LAiSLha~~~~~R~~lmPi~~~~ 261 (384) .+.|||+++ ..+...++.+.. .| .++.+.|.|......... ......+.+|+.+++++.+..+.....+. T Consensus 148 ~~~gep~~~-~~~~~~~~~~~~-~~-----~~~~~~tn~~~~~~~~~~~~~~~~~~~v~isl~~~~~~~~~~~~~~~~~~ 220 (342) T 2yx0_A 148 SLSGEPMLY-PYMGDLVEEFHK-RG-----FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPD 220 (342) T ss_dssp CSSSCGGGS-TTHHHHHHHHHH-TT-----CEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSC T ss_pred ECCCCCCCC-HHHHHHHHHHHH-CC-----CEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCC T ss_conf 468775454-409999999986-39-----72899548877258999886425775799627899989999871877777 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCC-----CCCCCHHHHH Q ss_conf 89999999999986258945999998726999888999999998325453-16675127788798-----8688989999 Q gi|254781120|r 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCE-----YLCSDQKDIV 335 (384) Q Consensus 262 ~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~~-----~~~~~~~~i~ 335 (384) ++++++++++.+. .. +-++.+..+++.|.||. +..++++++..+.+ .|++.||.|.++.+ ..+++.+.+. T Consensus 221 ~~~~~~~~i~~l~-~~-g~~v~~~~~~~~g~n~~--~~~~~~~~~~~lg~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~ 296 (342) T 2yx0_A 221 GWERILRFLELMR-DL-PTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIR 296 (342) T ss_dssp HHHHHHHHHHHHT-TC-SSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHH T ss_pred HHHHHHHHHHHHH-HC-CCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCCEEEEECCEECCCCCHHCCCCCCCCHHHHH T ss_conf 8999999999999-66-99889999986898878--89999999987499889986525568860112401499889999 Q ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHH Q ss_conf 999999987987854158777100112002102 Q gi|254781120|r 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 (384) Q Consensus 336 ~F~~~L~~~Gi~~tiR~srG~DI~aACGQL~~~ 368 (384) +|.+.+.+.+....++...|.++.++|++.+-. T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (342) T 2yx0_A 297 EFAEALVKHLPGYHIEDEYEPSRVVLIMRDDVD 329 (342) T ss_dssp HHHHHHHTTCTTEEEEEEEGGGTEEEEEETTSE T ss_pred HHHHHHHHHCCCCEEECCCCCCEEEEEEECCCC T ss_conf 999999987269664226676518997741415 No 2 >>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:) Probab=99.83 E-value=8.2e-20 Score=167.28 Aligned_cols=285 Identities=15% Similarity=0.163 Sum_probs=197.2 Q ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEECC-CCCCCEEEEEECCCCHHCCCCCCCC Q ss_conf 788999998620225787023465314544303775247777898155443023-4677338988406510048613224 Q gi|254781120|r 56 ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTG 134 (384) Q Consensus 56 Lpk~lR~~L~e~~~i~~l~iv~~~~S~DGT~K~L~~l~d~~~~dg~~IEsVlip-~~~r~T~CvSSQvGC~m~C~FCaTg 134 (384) ||++.++.|.+++..... .+.+|+.+++... ....+..++.+..+ ..++.++|++.+.||.++|.||..+ T Consensus 2 i~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CNl~C~~C~~~ 72 (311) T 2z2u_A 2 IPEEIYKILRKQRYQIDG------HTAVKLCGWVRKK---MLEDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCWRV 72 (311) T ss_dssp CCHHHHHHHHTTTCEEET------TEEEECCTTHHHH---HTTCCCCHHHHHHCCCGGGEEEEESCSSCCSCC------- T ss_pred CCHHHHHHHHHCCCEEEC------CCCEEECCCHHHH---HCCCCCEEEEEEECCCCCCEEEEEECHHHHCCCCCCCCCC T ss_conf 897999999867966555------6433654214998---4769876224552614666243212631022679467897 Q ss_pred CC----------HHHCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC Q ss_conf 41----------1102789899999999999972-220344443434445458611014410145445428999999603 Q gi|254781120|r 135 TQ----------KLVRNLTAEEILLQVLLARSLL-GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 (384) Q Consensus 135 ~~----------G~~RNLt~~EIv~Qv~~~~~~l-~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~ 203 (384) .. +..+.++..+++.+.-..+-.. ....................+.++|+.|.||||++ +.+...++. T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~t~~cn~~C~~c~~~~~~~~~i~~~~~~~~~~~~~~~~~~GGepll~-~~~~~~~~~ 151 (311) T 2z2u_A 73 LPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAISLSGEPTLY-PYLDELIKI 151 (311) T ss_dssp ---------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEECSSSCGGGS-TTHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC-CCHHHHHHH T ss_conf 7777666731012334379899999999999999864036665410566776427757998158874100-279999999 Q ss_pred CCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 76845778775368885138741478860125651799840455113444123312578999999999998625894599 Q gi|254781120|r 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 (384) Q Consensus 204 l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit 283 (384) +.+ .++ +++++|.|.. +.+........+.+|+++..++.+.++++. ++++.+.++++++... . +.+++ T Consensus 152 ~~~-~~~-----~~~i~TNG~~--~~~~~~~~l~~~~is~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~-~~~v~ 219 (311) T 2z2u_A 152 FHK-NGF-----TTFVVSNGIL--TDVIEKIEPTQLYISLDAYDLDSYRRICGG-KKEYWESILNTLDILK--E-KKRTC 219 (311) T ss_dssp HHH-TTC-----EEEEEECSCC--HHHHHHCCCSEEEEECCCSSTTTC----CC-CHHHHHHHHHHHHHHT--T-SSSEE T ss_pred HHH-HCC-----HHEEECCCCC--HHHHHHCCCCEEEEEECCCCHHHHHHHHCC-CCCHHHHHHHHHHHHH--H-CCCEE T ss_conf 863-030-----2100005542--367762366168987357999999998687-6563999999999998--6-69859 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC-----CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 99987269998889999999983254531667512778879-----8868898999999999998798785415877710 Q gi|254781120|r 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC-----EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 (384) Q Consensus 284 ~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~-----~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~DI 358 (384) +.++++++.+|..++..++++-++. ..++++||+|.+.. ...+++.+.+.+|.+.+.+.+..+.++. ++ T Consensus 220 i~~~i~~~~~d~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 293 (311) T 2z2u_A 220 IRTTLIRGYNDDILKFVELYERADV--HFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSSYKLIDD----SE 293 (311) T ss_dssp EEEEECTTTTCCGGGTHHHHHHHTC--SEEEEEECC------------CCCCHHHHHHHHHHHHTSSSEEEEEE----EG T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC----CC T ss_conf 9997266865289999999874598--88999600741466331630039989999999999875469715247----78 Q ss_pred CCCCCCCHHH Q ss_conf 0112002102 Q gi|254781120|r 359 LAACGQLKSL 368 (384) Q Consensus 359 ~aACGQL~~~ 368 (384) .++||||+.. T Consensus 294 ~~~~g~l~~~ 303 (311) T 2z2u_A 294 DSRVALLQNE 303 (311) T ss_dssp GGTEEEEEET T ss_pred CCEEEEEECC T ss_conf 7458998556 No 3 >>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:) Probab=99.68 E-value=5e-15 Score=131.83 Aligned_cols=217 Identities=16% Similarity=0.280 Sum_probs=168.0 Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCC---CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 544302346773389884065100486132244---11102789899999999999972220344443434445458611 Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT---QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 (384) Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~---~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i 179 (384) ++...+. ....+++++..-||+++|.||.+.. .+..|.++..++..++..+.+.- .+- T Consensus 9 ~~~~~~~-~~~~~~~i~~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 69 (245) T 3c8f_A 9 FESCGTV-DGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFM------------------NAS 69 (245) T ss_dssp EEEEECT-TSSSEEEEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHH------------------TST T ss_pred EEEEEEE-ECCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH------------------HCC T ss_conf 8994068-279728999868968879899980331867991788999999999999985------------------158 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHCCCCCCEEEEEECCCCHHHHHHCC Q ss_conf 014410145445428999999603768457787753688851387---41478860125651799840455113444123 Q gi|254781120|r 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 (384) Q Consensus 180 ~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi---~p~I~~la~~~~~~LAiSLha~~~~~R~~lmP 256 (384) -++++.+-|||+++.+.+...++.+... |.. +.+.|.|. ...+.++.+..-..+.+|+.+++++..+.+.+ T Consensus 70 ~~~~~~~gGep~l~~~~~~~l~~~~~~~-~~~-----~~~~tn~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 143 (245) T 3c8f_A 70 GGGVTASGGEAILQAEFVRDWFRACKKE-GIH-----TCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVG 143 (245) T ss_dssp TCEEEEEESCGGGGHHHHHHHHHHHHTT-TCC-----EEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHS T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHH-CCC-----EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHC T ss_conf 8668715677442678999999998863-571-----4661377311445556542133210114500100678887627 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC--CEEEEEECCCCCCC---------- Q ss_conf 312578999999999998625894599999872699988899999999832545--31667512778879---------- Q gi|254781120|r 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC---------- 324 (384) Q Consensus 257 i~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~--~~vNLIp~N~~~~~---------- 324 (384) . ..++++++++...+ . +.++.+.++++.|.||+.++..+++++++..+ .+++++||+|.++. T Consensus 144 ~----~~~~~~~~i~~~~~-~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 217 (245) T 3c8f_A 144 V----SNHRTLEFAKYLAN-K-NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK 217 (245) T ss_dssp S----CSHHHHHHHHHHHH-H-TCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCT T ss_pred C----HHHHHHHHHHHHHC-C-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCC T ss_conf 3----32666766545422-5-5513776632389889999999999999857997558871476256424766285454 Q ss_pred --CCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf --88688989999999999987987854 Q gi|254781120|r 325 --EYLCSDQKDIVTFSECIKRSGYSSPI 350 (384) Q Consensus 325 --~~~~~~~~~i~~F~~~L~~~Gi~~ti 350 (384) .+.++..+.++.+.+++++.|+.+++ T Consensus 218 ~~~~~~~~~e~~~~~~~~~~~~g~~v~~ 245 (245) T 3c8f_A 218 LDGVKPPKKETMERVKGILEQYGHKVMF 245 (245) T ss_dssp TTTCCCCCHHHHHHHHHHHHTTTCCBCC T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEC T ss_conf 3489989999999999999985992779 No 4 >>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342) Probab=99.60 E-value=1.3e-14 Score=128.88 Aligned_cols=224 Identities=12% Similarity=0.071 Sum_probs=167.6 Q ss_pred CCCCCEEEEEECCCCHHCCCCCCCCC-CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC Q ss_conf 46773389884065100486132244-11102789899999999999972220344443434445458611014410145 Q gi|254781120|r 110 EKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 (384) Q Consensus 110 ~~~r~T~CvSSQvGC~m~C~FCaTg~-~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmG 188 (384) +....++|++..-||+++|+||++.. .|-.|.+...|++.+++..... ...+..|+|-|-+ T Consensus 17 ~~~~~~~~i~~T~~Cn~~C~~C~~~~~~~~~~~~~~~e~i~~~~~~~~~------------------~~~~~~i~~~gge 78 (248) T 2a5h_A 17 HRYPDRVLLLITDXCSXYCRHCTRRRFAGQSDDSXPXERIDKAIDYIRN------------------TPQVRDVLLSGGD 78 (248) T ss_dssp CCSSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHT------------------CTTCCEEEEEESC T ss_pred EECCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------------------CCCEEEEEEECCC T ss_conf 3337547998414301004512542335763342149999999999983------------------8983699985698 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHH---HCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHH Q ss_conf 4454289999996037684577877536888513874147886---0125651799840455113444123312578999 Q gi|254781120|r 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV---GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 (384) Q Consensus 189 EPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~l---a~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~ 265 (384) .++.+.+.+...++.+... .....++++|.+..-..+.+ ....-..+.+|.-..... .++...+. T Consensus 79 p~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~ 146 (248) T 2a5h_A 79 ALLVSDETLEYIIAKLREI----PHVEIVRIGSRTPVVLPQRITPELVNXLKKYHPVWLNTHFN--------HPNEITEE 146 (248) T ss_dssp TTSSCHHHHHHHHHHHHTS----TTCCEEEEECSHHHHCGGGCCHHHHHHHGGGCSEEEEECCC--------SGGGCCHH T ss_pred CCCCCHHHHHHHHHHHHHC----CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECC--------CCCCCCHH T ss_conf 5626889999999999708----99754888705542461656899998530266489972147--------65443034 Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCE-EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 99999999862589459999987269998889999999983254531-66751277887988688989999999999987 Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344 (384) Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~-vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~ 344 (384) .+++++... .. +..+.+.++++.|.||+.++..+++++++.+... |++.+|+|.++.++...+.....++.+.+.+ T Consensus 147 ~~~~i~~l~-~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~t~~~~~~~~~~~e~~~~~~~- 223 (248) T 2a5h_A 147 STRACQLLA-DA-GVPLGNQSVLLRGVNDCVHVXKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRG- 223 (248) T ss_dssp HHHHHHHHH-HT-TCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBT- T ss_pred HHHHHHHHH-HC-CCEEEEECEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHH- T ss_conf 899999999-77-986987461678615877899999999984883899976126775232037889999999998775- Q ss_pred CCEEEECCCCCCCCCCCCCCCH Q ss_conf 9878541587771001120021 Q gi|254781120|r 345 GYSSPIRTPRGLDILAACGQLK 366 (384) Q Consensus 345 Gi~~tiR~srG~DI~aACGQL~ 366 (384) .+.-..+..++.++.++||||. T Consensus 224 ~~~~~~~~~~~~~~~~~~G~l~ 245 (248) T 2a5h_A 224 HTSGYCVPTFVVDAPGGGGKTP 245 (248) T ss_dssp TBCGGGCCEEEEEETTTTEEEE T ss_pred HCCCCCCEEEEECCCCCCCCCC T ss_conf 3897443037641688988500 No 5 >>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:) Probab=99.46 E-value=5.5e-12 Score=109.31 Aligned_cols=160 Identities=16% Similarity=0.269 Sum_probs=130.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHCCCCCCEEEEEECCCCHHHHHHCCC Q ss_conf 1014410145445428999999603768457787753688851387414-788601256517998404551134441233 Q gi|254781120|r 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAVSNDLRNILVPI 257 (384) Q Consensus 179 i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~~~~~~LAiSLha~~~~~R~~lmPi 257 (384) +.+|+|.| ||||+|.|.+...++.+.+ .|+ +++++|.|..+. ...+.....-.+.+||++++++..+++.+. T Consensus 4 ~~~v~~tG-GEPll~~d~i~~i~~~~~~-~g~-----~~~l~Tng~~~~~~~~~~~~~~~~i~isld~~~~~~~~~~~~~ 76 (182) T 3can_A 4 GGGVTFCG-GEPLLHPEFLIDILKRCGQ-QGI-----HRAVDTTLLARKETVDEVXRNCELLLIDLKSXDSTVHQTFCDV 76 (182) T ss_dssp CCCEEECS-STGGGSHHHHHHHHHHHHH-TTC-----CEEEECTTCCCHHHHHHHHHTCSEEEEECCCSCHHHHHHHHSS T ss_pred CCCEEEEC-CCCCCCHHHHHHHHHHHHH-CCC-----CEEEEECCCHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHH T ss_conf 98489971-3330898899999999987-799-----2999725211077777665200000243220038888878730 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCE---EEEEECCCCC------------ Q ss_conf 1257899999999999862589459999987269998889999999983254531---6675127788------------ Q gi|254781120|r 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPWP------------ 322 (384) Q Consensus 258 ~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~---vNLIp~N~~~------------ 322 (384) ..+..+++++... .. +.++.++.+++.+.||+.++..++++++..+++. ++++|+.+.+ T Consensus 77 ----~~~~~~~~i~~l~-~~-~~~~~i~~~~~~~~~d~~~ei~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 150 (182) T 3can_A 77 ----PNELILKNIRRVA-EA-DFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYN 150 (182) T ss_dssp ----CSHHHHHHHHHHH-HT-TCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-------------- T ss_pred ----HHHHHHHHHHHHH-HH-HCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCC T ss_conf ----2578886666676-63-02312443022797599999999999998669984798665565676106877086245 Q ss_pred --CCCCCCCCHHHHHHHHHHHHHCCCEEEEC Q ss_conf --79886889899999999999879878541 Q gi|254781120|r 323 --GCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 (384) Q Consensus 323 --~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR 351 (384) ...+..++.+.+..|.+++.+.|+.++|| T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~ 181 (182) T 3can_A 151 PKGYKXQTPSEEVQQQCIQILTDYGLKATIG 181 (182) T ss_dssp ----CCBCCCHHHHHHHHHHHHHTTCCEEEC T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC T ss_conf 4457779999999999999999709816859 No 6 >>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:) Probab=99.18 E-value=1.5e-09 Score=91.33 Aligned_cols=198 Identities=16% Similarity=0.154 Sum_probs=139.4 Q ss_pred CCEEEEEECCCCHHCCCCCCCCC---CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC Q ss_conf 73389884065100486132244---111027898999999999999722203444434344454586110144101454 Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCYTGT---QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384) Q Consensus 113 r~T~CvSSQvGC~m~C~FCaTg~---~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384) ...+.+...-||+.+|.||.... .+-.|.++.+||++.+-.+.+. -...|+++.|| T Consensus 52 ~~~~~i~~t~gC~~~C~fC~~~~~~~~~~~~~~~~e~i~~~i~~~~~~---------------------g~~~~~~~~g~ 110 (348) T 3iix_A 52 HIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQF---------------------GAKTIVLQSGE 110 (348) T ss_dssp EEEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHT---------------------TCSEEEEEESC T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHC---------------------CCCEEEEECCC T ss_conf 999999877886998957998666898652314578899999999971---------------------88256540265 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHH Q ss_conf 45428999999603768457787753688851387414-78860125651799840455113444123312578999999 Q gi|254781120|r 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 (384) Q Consensus 190 Pl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~ 268 (384) |+...+..+..+.......++. ++++...+.+. +++|++..-..+.+|+.+.+++.++.+.+ ....+++++ T Consensus 111 p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~~v~i~les~~~~~~~~~~~---~~~~~~~~~ 182 (348) T 3iix_A 111 DPYXMPDVISDIVKEIKKMGVA-----VTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRP---DTSFENRLN 182 (348) T ss_dssp CGGGTTHHHHHHHHHHHTTSCE-----EEEECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHST---TSCHHHHHH T ss_pred CCCCCHHHHHHHHHHHHCCCHH-----CCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHCCCC---CCCCHHHHH T ss_conf 2345278888998864012010-----02344411689999998742627884444233455210000---332015677 Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCC---CCHHHHHHHHHHHH Q ss_conf 999998625894599999872699988899999999832545-316675127788798868---89899999999999 Q gi|254781120|r 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC---SDQKDIVTFSECIK 342 (384) Q Consensus 269 a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~-~~vNLIp~N~~~~~~~~~---~~~~~i~~F~~~L~ 342 (384) +++...+ . |-.+ .-++++..-+++.++..+++++++.+. -.+.+.+|.|.|+.++.. .+.+.......... T Consensus 183 ~i~~~~~-~-g~~~-~~~~i~g~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~~~ 257 (348) T 3iix_A 183 XLLTLKE-L-GYET-GAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTR 257 (348) T ss_dssp HHHHHHH-T-TCEE-EECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHH T ss_pred HHHHHHH-H-HHCC-CCEEEECCCCCCHHHHHHHHHHHHHHHHCEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 7778787-6-5312-410576277656688888899998755334055101235999755689989899999999999 No 7 >>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} (A:1-313) Probab=99.15 E-value=1.9e-08 Score=83.11 Aligned_cols=177 Identities=16% Similarity=0.196 Sum_probs=126.0 Q ss_pred CCEEEEEECCCCHHCCCCCCCCCC--------HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 733898840651004861322441--------110278989999999999997222034444343444545861101441 Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCYTGTQ--------KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 (384) Q Consensus 113 r~T~CvSSQvGC~m~C~FCaTg~~--------G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVf 184 (384) -.++.+...-||.+.|.||..... .-.+.++..||...+-.+... -...|+ T Consensus 13 ~~~~~i~~t~~Cn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~ 71 (313) T 1tv8_A 13 IRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAEL---------------------GVKKIR 71 (313) T ss_dssp CCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHT---------------------TCCEEE T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCEEEE T ss_conf 38479984240178796889750067777657610358999999999999976---------------------981997 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCC Q ss_conf 01454454289999996037684577877536888513874--1478860125651799840455113444123312578 Q gi|254781120|r 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 (384) Q Consensus 185 MGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~ 262 (384) ++.|||+++.+ ....++.+... .+...++++|.|.. ..+.++.+..-..+.+|+.+++++..+++++. +.. T Consensus 72 ~~GGEP~l~~~-~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~isi~~~~~~~~~~~~~~--~~~ 144 (313) T 1tv8_A 72 ITGGEPLMRRD-LDVLIAKLNQI----DGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNR--NIK 144 (313) T ss_dssp EESSCGGGSTT-HHHHHHHHTTC----TTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSS--CCC T ss_pred ECCCCCCCCCH-HHHHHHHHHHC----CCCCCEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHEEC--CCC T ss_conf 47984002610-69999986402----544310013331234068999998399988722557888887562004--775 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 99999999999862589459999987269998889999999983254531667512778 Q gi|254781120|r 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 (384) Q Consensus 263 l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~ 321 (384) .+.++++++... .. +-.+....+.+.+ ++.++..+++++++.+++..-.+.+.+. T Consensus 145 ~~~~~~~i~~l~-~~-g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (313) T 1tv8_A 145 ATTILEQIDYAT-SI-GLNVKVNVVIQKG--INDDQIIPMLEYFKDKHIEIRFIEFMDV 199 (313) T ss_dssp HHHHHHHHHHHH-HT-TCEEEEEEEECTT--TTGGGHHHHHHHHHHTTCCEEEEECCCB T ss_pred CCHHHHHHHHHH-HC-CCCEEEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCEEEECC T ss_conf 210126899999-85-9983363686167--5500128999999852743023255205 No 8 >>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} (A:) Probab=98.91 E-value=5.7e-08 Score=79.58 Aligned_cols=201 Identities=12% Similarity=0.087 Sum_probs=133.6 Q ss_pred CCEEEEEECCCCHHCCCCCCCCC-----CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC Q ss_conf 73389884065100486132244-----1110278989999999999997222034444343444545861101441014 Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 (384) Q Consensus 113 r~T~CvSSQvGC~m~C~FCaTg~-----~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGm 187 (384) ..++.+.+.-||+++|.||.... .+-.+.++..||...+-.+.+. .+ ..|+.+- T Consensus 65 ~~~~~~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~--------------------g~-~~i~~~g 123 (369) T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA--------------------GS-TRFCMGA 123 (369) T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT--------------------TC-SEEEEEE T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CC-EEEEEEE T ss_conf 98687744899998792299834189998754557878999999999973--------------------99-7999987 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC--C-HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHH Q ss_conf 5445428999999603768457787753688851387--4-147886012565179984045511344412331257899 Q gi|254781120|r 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--V-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 (384) Q Consensus 188 GEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi--~-p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~ 264 (384) |||+.+.+.+...++.+....+..+ .++|.+. . ..+++|++..-..+.+|+.+.++..+.. +++.+.+ T Consensus 124 g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~----~~~~~~~ 194 (369) T 1r30_A 124 AWKNPHERDMPYLEQMVQGVKAMGL-----EACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNI----ITTRTYQ 194 (369) T ss_dssp CCSSCCTTTHHHHHHHHHHHHHTTS-----EEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHHH----CCSSCHH T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCC-----EEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHCCC----CCCCCHH T ss_conf 3588652699999999998652384-----453055778999999998478608975302020122046----7778899 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC---EEEEEECCCCCCCCC---CCCCHHHHHHHH Q ss_conf 99999999986258945999998726999888999999998325453---166751277887988---688989999999 Q gi|254781120|r 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPGCEY---LCSDQKDIVTFS 338 (384) Q Consensus 265 ~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~---~vNLIp~N~~~~~~~---~~~~~~~i~~F~ 338 (384) ..+++++..- .. |-++.+.++ =|.+++.++..++.++++.+.+ .|+..+|.|.++.++ ..++.+....+. T Consensus 195 ~~~~~i~~~~-~~-g~~~~~~~i--~g~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~p~~gt~~~~~~~~~~~~~~~~~ 270 (369) T 1r30_A 195 ERLDTLEKVR-DA-GIKVCSGGI--VGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTI 270 (369) T ss_dssp HHHHHHHHHH-HH-HCEEECCEE--ECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHH T ss_pred HHHHHHHHHH-HC-CCCEEEEEE--ECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 9999999999-86-991652148--3699999999999999986588988876051068999864446799999999999 Q ss_pred HHHHHCCCE Q ss_conf 999987987 Q gi|254781120|r 339 ECIKRSGYS 347 (384) Q Consensus 339 ~~L~~~Gi~ 347 (384) ......... T Consensus 271 ~~~~~~~~~ 279 (369) T 1r30_A 271 AVARIMMPT 279 (369) T ss_dssp HHHHHHCTT T ss_pred HHHHHHCCC T ss_conf 999997888 No 9 >>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364) Probab=98.83 E-value=5.4e-07 Score=72.33 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=133.5 Q ss_pred CCCCCEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC Q ss_conf 4677338988406510048613224411102789899999999-999972220344443434445458611014410145 Q gi|254781120|r 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 (384) Q Consensus 110 ~~~r~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmG 188 (384) ...+...++.+--||+.+|.||......-.+.-...+.+..+. .+.+.... .....+ +.++.+.| T Consensus 48 ~~~~~~~~~~~~rGC~~~C~fC~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~-------------~~~~g~-~~~~~~~~ 113 (364) T 1olt_A 48 YPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPL-------------FAGRHV-SQLHWGGG 113 (364) T ss_dssp CTTSCEEEEEEECEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGG-------------GTTCCE-EEEEEEES T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH-------------CCCCCE-EEEEECCC T ss_conf 9999539999718989888999882565888551999999999999997766-------------389974-69997487 Q ss_pred CHHH-HHHH---HHHHHHCCCCCCCCCCCCCEEEEEECCC--C-HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCC Q ss_conf 4454-2899---9999603768457787753688851387--4-147886012565179984045511344412331257 Q gi|254781120|r 189 EPLC-NFDN---VKKSLSIASDSMGLSFSKRRITLSTSGF--V-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 (384) Q Consensus 189 EPl~-N~d~---v~~ai~~l~~~~g~~~~~r~ITvST~Gi--~-p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~ 261 (384) +|.. +-+. ++.+++-+....+ .-.++++|.+. - ..++.|++..-..+.+++.+.+++.++.+ ++.+ T Consensus 114 ~~~~~~~~~~~~l~~~i~~~~~~~~----~~~~~~~~~~~~~~~e~~~~l~~~G~~~i~ig~es~~~~~~~~~---~k~~ 186 (364) T 1olt_A 114 TPTYLNKAQISRLMKLLRENFQFNA----DAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLV---NREQ 186 (364) T ss_dssp CGGGSCHHHHHHHHHHHHHHSCEEE----EEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHH---TCCC T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCC----CCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHH---HCCC T ss_conf 5165999999999999998657776----62147983499872778999973799879983686867888664---0668 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCCC--------C-- Q ss_conf 8999999999998625894599999872699988899999999832545-3166751277887988688--------9-- Q gi|254781120|r 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLCS--------D-- 330 (384) Q Consensus 262 ~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~-~~vNLIp~N~~~~~~~~~~--------~-- 330 (384) +.++.+++++...+ . |-...--++++..-+++.++..+.+++++.+. -++.+.+|.|.++.++... . T Consensus 187 ~~~~~~~~i~~~~~-~-g~~~v~~~~i~g~p~et~~~~~~~l~~~~~~~~~~~~i~~~~p~~gt~~~~~~~~~~~~~~~~ 264 (364) T 1olt_A 187 DEEFIFALLNHARE-I-GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQ 264 (364) T ss_dssp CHHHHHHHHHHHHH-T-TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHH T ss_pred CHHHHHHHHHHHHH-H-HCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECEECCCHHHHHHCCCCCCCCCHH T ss_conf 78999999999998-4-255340340477998426778999999984089833443110078427766233222352058 Q ss_pred --HHHHHHHHHHHHHCCCEE Q ss_conf --899999999999879878 Q gi|254781120|r 331 --QKDIVTFSECIKRSGYSS 348 (384) Q Consensus 331 --~~~i~~F~~~L~~~Gi~~ 348 (384) ........+.+...+... T Consensus 265 ~~~~~~~~~~~~~~~~~~~~ 284 (364) T 1olt_A 265 QKLDILQETIAFLTQSGYQF 284 (364) T ss_dssp HHHHHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHHHHHHCCCHH T ss_conf 99999999999999769311 No 10 >>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:1-112) Probab=96.63 E-value=0.0035 Score=44.10 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=38.5 Q ss_pred CCCCEEEEEECCCCHHCCCCCCCCC-CHHHCCCCHHHHHHHHHHHHH Q ss_conf 6773389884065100486132244-111027898999999999999 Q gi|254781120|r 111 KSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARS 156 (384) Q Consensus 111 ~~r~T~CvSSQvGC~m~C~FCaTg~-~G~~RNLt~~EIv~Qv~~~~~ 156 (384) +++.++.|.++=||+.+|.||.+.. .|-.|..++..|++++-...+ T Consensus 1 ~~~~~~~i~tsRGCp~~C~FC~~~~~~g~~r~r~~~~v~~ei~~l~~ 47 (112) T 2qgq_A 1 EERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLK 47 (112) T ss_dssp CCCSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCCCCCCEECEEEEEECCEEEECHHHHHHHHHHHHH T ss_conf 99850998986798997755734212297287099999999999998 No 11 >>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:113-234) Probab=92.13 E-value=1.1 Score=25.73 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=66.6 Q ss_pred CEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE-CCCCCCHHHHHHHHHHHCCC-CCEEEE Q ss_conf 1799840455113444123312578999999999998625894599999872-69998889999999983254-531667 Q gi|254781120|r 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML-KGINDSPRDALNLIKILKGI-PAKINL 315 (384) Q Consensus 238 ~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli-~gvNDs~e~a~~L~~ll~~~-~~~vNL 315 (384) .+.+.+-|.+++..+. +||.+..++.+++++... .. |-.+.+..-+| ..-+++.++..+-++++..+ +..|++ T Consensus 4 ri~iGieS~~~~vl~~---~~r~~~~~~~~~~~~~l~-~~-g~~~~i~~~~i~GlPget~e~~~~t~~~l~~l~~d~i~~ 78 (122) T 2qgq_A 4 YFDVPVQHGSDKILKL---XGRTKSSEELKKXLSSIR-ER-FPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGA 78 (122) T ss_dssp EEECCCBCSCHHHHHH---TTCCSCHHHHHHHHHHHH-HH-CTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEE T ss_pred CCCCCCCCCCHHHHHH---HHCCCCHHHHHHHHHHHH-HH-CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHC T ss_conf 2322334466777777---643763443235776787-74-899638877876179887378999899987649881002 Q ss_pred EECCCCCCCCCCC Q ss_conf 5127788798868 Q gi|254781120|r 316 IPFNPWPGCEYLC 328 (384) Q Consensus 316 Ip~N~~~~~~~~~ 328 (384) -+|.|.||+++.. T Consensus 79 ~~~~~~~gT~l~~ 91 (122) T 2qgq_A 79 FVYSDEEGTVAFN 91 (122) T ss_dssp EECCC-------- T ss_pred CEEEEHHHHCCCC T ss_conf 1023222201200 No 12 >>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha- beta crossover, transferase; 1.75A {Klebsiella pneumoniae} (A:) Probab=77.25 E-value=5.7 Score=20.36 Aligned_cols=109 Identities=19% Similarity=0.297 Sum_probs=72.5 Q ss_pred CEEEEEECCCCHHHHHHC----CCCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC Q ss_conf 179984045511344412----33125---78999999999998625894599999872699988899999999832545 Q gi|254781120|r 238 MLAISLHAVSNDLRNILV----PINRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 (384) Q Consensus 238 ~LAiSLha~~~~~R~~lm----Pi~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~ 310 (384) =+.+.=.+++|+.+..+| |-+-+ +++++..+.+.+.. .. +.++++ + -.++++|.+|++.--++ T Consensus 30 IiVvdD~~A~d~~~k~~l~mA~P~gvk~~i~sve~a~~~~~~~~-~~-~~~vli---i----~~~~~d~~~l~~~g~~i- 99 (164) T 1nrz_A 30 IIICNDDVFNDEVRRTLLRQAAPPGMKVNVVSLEKAVAVYHNPQ-YQ-DETVFY---L----FTNPHDVLTMVRQGVQI- 99 (164) T ss_dssp EEEECHHHHTCHHHHHHHHHTCCTTCEEEEECHHHHHHHHTCGG-GT-TCEEEE---E----ESSHHHHHHHHTTTCCC- T ss_pred EEEECCHHCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCC-CC-CCEEEE---E----ECCHHHHHHHHHCCCCC- T ss_conf 99976222189999999995179986799974999999985766-57-865999---9----89999999999739998- Q ss_pred CEEEEEECCCCCCCCCCC----CCHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 316675127788798868----89899999999999879878541587771 Q gi|254781120|r 311 AKINLIPFNPWPGCEYLC----SDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 (384) Q Consensus 311 ~~vNLIp~N~~~~~~~~~----~~~~~i~~F~~~L~~~Gi~~tiR~srG~D 357 (384) -.||+=..+.-+|...-. -+++.+++|. .|.+.|+.+++|..-... T Consensus 100 ~~iNiG~~~~~~g~~~i~~~v~l~~ee~~~lk-~l~~~Gv~v~~q~vP~~~ 149 (164) T 1nrz_A 100 ATLNIGGMAWRPGKKQLTKAVSLDPQDIQAFR-ELDKLGVKLDLRVVASDP 149 (164) T ss_dssp SEEEEEEBCCCTTCEEEETTEEECHHHHHHHH-HHHHTTCEEEECSSTTSC T ss_pred CEEEECCCCCCCCCEEEECCEECCHHHHHHHH-HHHHCCCEEEEEECCCCC T ss_conf 88998998788997797364501999999999-999779879999895997 No 13 >>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8} (A:88-154,A:241-317) Probab=76.27 E-value=2.5 Score=22.99 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=40.1 Q ss_pred CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH----HHHHHHHHHHCCCCC Q ss_conf 111027898999999999999722203444434344454586110144101454454----289999996037684 Q gi|254781120|r 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC----NFDNVKKSLSIASDS 207 (384) Q Consensus 136 ~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~----N~d~v~~ai~~l~~~ 207 (384) -||.-+|+..|+.+|+- -.+...+|.++||- |.-+|..|++.|... T Consensus 40 pG~~~~ls~~~f~~~v~--------------------------~~g~~ivgqs~PLG~~iGNalEv~Eai~~L~G~ 89 (144) T 2dsj_A 40 PGWRGEMTEAEFLERAR--------------------------RVGLVIAAQSPPLGRAVGNAIEVREAIEALKGE 89 (144) T ss_dssp TTCCCCCCHHHHHHHHH--------------------------HTSEEEESCGGCSSSEEESHHHHHHHHHHHTTC T ss_pred CCCCCCCCHHHHHHHHC--------------------------CCCEEEECCCCHHCCCCCCHHHHHHHHHHHCCC T ss_conf 39865666899998622--------------------------464688416463111136678899999987179 No 14 >>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* (A:1-157,A:211-313) Probab=63.78 E-value=7.8 Score=19.33 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=65.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHH-HHHHCCC Q ss_conf 101441014544542899999960376845778775368885138741478860125651799840455113-4441233 Q gi|254781120|r 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDL-RNILVPI 257 (384) Q Consensus 179 i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~-R~~lmPi 257 (384) +.+-++..+.+|..+.+.+++.+..+..|.| .+-++|.-..|-+.++|.+..-.| +.--...|. .+++-|. T Consensus 119 ~~~~~l~~~~~~~~~~~~~l~~i~rlLKPGG------~Liis~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 190 (260) T 3bgv_A 119 SCQFVCHYSFESYEQADMMLRNACERLSPGG------YFIGTTPNYFPLLNEMAKKYNMKL--VYKKTFLEFYEEKIKNN 190 (260) T ss_dssp EEETCGGGGGGSHHHHHHHHHHHHTTEEEEE------EEEEEEECCHHHHHHHGGGGTEEE--EEEEEHHHHHHHHTTSH T ss_pred EECCCEEEEHHHHHHHHHHHHHHHHEECCCE------EEEEECCCCHHHHHHHHHHCCCEE--EEEECHHHHHHHHHCCC T ss_conf 1022234400216689999998761627980------899824648999999999869999--99516899998762253 Q ss_pred CCCCCHHHHHHHHHHHHHHC Q ss_conf 12578999999999998625 Q gi|254781120|r 258 NRKYPLEMLIDACRHYPGLS 277 (384) Q Consensus 258 ~~~~~l~~l~~a~~~y~~~~ 277 (384) ..+ .|-+=|.||.-|+.-. T Consensus 191 ~~~-~~~~~~~~~~~~~~~~ 209 (260) T 3bgv_A 191 ENK-MLLKRMQALEPYPANE 209 (260) T ss_dssp HHH-HHHHHHC--------- T ss_pred HHH-HHHHHHHCCCCCCCCC T ss_conf 027-8998741123455544 No 15 >>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} (A:) Probab=60.53 E-value=12 Score=17.89 Aligned_cols=108 Identities=15% Similarity=0.238 Sum_probs=69.1 Q ss_pred CEEEEEECCCCHHHHHHC----C-CCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 179984045511344412----3-3125---7899999999999862589459999987269998889999999983254 Q gi|254781120|r 238 MLAISLHAVSNDLRNILV----P-INRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 (384) Q Consensus 238 ~LAiSLha~~~~~R~~lm----P-i~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~ 309 (384) =+.++=.+++|+.+..+| | .+-+ +++++..+.+ .......++++ +. -++++|.+|++..-++ T Consensus 35 IiVvdD~va~D~~~k~~lkma~P~~gvk~~i~~v~~a~~~~---~~~~~~~~vli---i~----k~~~d~~~l~~~g~~i 104 (168) T 3eye_A 35 LVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVI---GKAAPHQKIFL---IC----RTPQTVRKLVEGGIDL 104 (168) T ss_dssp EEEECHHHHHSGGGGHHHHHHHHHHTCEEEEECHHHHHHHG---GGCCTTCCEEE---EE----SSHHHHHHHHHTTCCC T ss_pred EEEECCHHCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHH---HCCCCCCEEEE---EE----CCHHHHHHHHHCCCCC T ss_conf 99977100389999999972489777269998899999985---26476762999---97----9999999999759997 Q ss_pred CCEEEEEECCCCCCCCCC----CCCHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 531667512778879886----889899999999999879878541587771 Q gi|254781120|r 310 PAKINLIPFNPWPGCEYL----CSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 (384) Q Consensus 310 ~~~vNLIp~N~~~~~~~~----~~~~~~i~~F~~~L~~~Gi~~tiR~srG~D 357 (384) -.||+=.....+|...- .-+++.+++|. .|.+.|+.+.+|..-... T Consensus 105 -~~iNiG~~~~~~g~~~i~~~v~l~~ee~~~lk-~l~~~Gv~i~~q~vP~d~ 154 (168) T 3eye_A 105 -KDVNVGNMHFSEGKKQISSKVYVDDQDLTDLR-FIKQRGVNVFIQDVPGDQ 154 (168) T ss_dssp -CEEEECCBCCCTTCEEEETTEEECHHHHHHHH-HHHHTTCEEEECSSTTSC T ss_pred -CEEEECCCCCCCCCEEEECCEECCHHHHHHHH-HHHHCCCEEEEEECCCCC T ss_conf -78987887678996798253604999999999-999779879999793998 No 16 >>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} (A:395-528) Probab=58.04 E-value=8 Score=19.28 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=19.9 Q ss_pred HHHHHHHHHCCCCCHHHHCCCCHHHHHHHHH Q ss_conf 9999999871799967833478899999862 Q gi|254781120|r 36 SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 (384) Q Consensus 36 ~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e 66 (384) .|||+|+ ++++...++=..+.+++-..+.+ T Consensus 57 ~QiWQWi-~hg~~~~ddG~~vt~~lv~~~l~ 86 (134) T 3cux_A 57 AQVWQWI-RHEGGKLNDGRNITLELMEELKE 86 (134) T ss_dssp HHHHHHH-HCTTCBCTTSCBCCHHHHHHHHH T ss_pred HHHHHHH-HCCCEECCCCCCCCHHHHHHHHH T ss_conf 9999999-72681446764427999999999 No 17 >>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} (A:) Probab=57.38 E-value=14 Score=17.52 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=69.7 Q ss_pred EEEEEECCCCHHHHHHCCCC----C---CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC Q ss_conf 79984045511344412331----2---5789999999999986258945999998726999888999999998325453 Q gi|254781120|r 239 LAISLHAVSNDLRNILVPIN----R---KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 (384) Q Consensus 239 LAiSLha~~~~~R~~lmPi~----~---~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~ 311 (384) +.+.=.+++|+.+..+|..+ - -+++++..+.+.... .. +.++++ +. -++++|.+|++.--++ - T Consensus 32 iVvdD~~A~d~~~k~~l~~a~P~gvk~~i~~ve~a~~~~~~~~-~~-~~~vli---i~----k~~~da~~l~~~g~~i-~ 101 (163) T 1ble_A 32 IVVSDDIAQDEMRKTLILSVAPSNVKASAVSVSKMAKAFHSPR-YE-GVTAML---LF----ENPSDIVSLIEAGVPI-K 101 (163) T ss_dssp EEECHHHHHCHHHHHHHHTSSCTTSEEEEECHHHHHHHHHCST-TT-TCEEEE---EE----SSSHHHHHHHTTTCCC-C T ss_pred EEECCHHHCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCC-CC-CCEEEE---EE----CCHHHHHHHHHCCCCC-C T ss_conf 9972146089999999996389987289988999999975745-56-966999---98----9999999999759998-7 Q ss_pred EEEEEECCCCCCCCCC----CCCHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 1667512778879886----889899999999999879878541587771 Q gi|254781120|r 312 KINLIPFNPWPGCEYL----CSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 (384) Q Consensus 312 ~vNLIp~N~~~~~~~~----~~~~~~i~~F~~~L~~~Gi~~tiR~srG~D 357 (384) .||+=.....+|...- .-+++.+++|. .|.+.|+.+++|..-... T Consensus 102 ~iNiG~~~~~~g~~~i~~~v~l~~eE~~~l~-~l~~~Gv~v~~q~vP~~~ 150 (163) T 1ble_A 102 TVNVGGMRFENHRRQITKSVSVTEQDIKAFE-TLSDKGVKLELRQLPSDA 150 (163) T ss_dssp EEEEEEBCCCTTSEECSSSBEECHHHHHHHH-HHHHTTCEEEECSSTTSC T ss_pred EEEEECCCCCCCCEEEECCEEECHHHHHHHH-HHHHCCCEEEEEECCCCC T ss_conf 8999434258997798474500899999999-999769879999895996 No 18 >>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A (C:) Probab=57.13 E-value=14 Score=17.49 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=71.5 Q ss_pred CEEEEEECCCCHHHHHHC----CCCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC Q ss_conf 179984045511344412----33125---78999999999998625894599999872699988899999999832545 Q gi|254781120|r 238 MLAISLHAVSNDLRNILV----PINRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 (384) Q Consensus 238 ~LAiSLha~~~~~R~~lm----Pi~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~ 310 (384) =+.+.=.+++|+.+..+| |-+-+ +++++..+.+.... .. +.++++ + =-++++|.+|++---++ T Consensus 33 IiVvdD~~A~D~~~k~~lk~a~P~gvk~~i~~ve~a~~~l~~~~-~~-~~~vli---i----~k~~~~~~~l~~~g~~i- 102 (165) T 1vsq_C 33 IIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNNPK-YA-GERVML---L----FTNPTDVERLVEGGVKI- 102 (165) T ss_dssp EEEECHHHHTCHHHHHHHHHTCCTTCEEEEECHHHHHHHHTCGG-GT-TCEEEE---E----ESSHHHHHHHHHTTCCC- T ss_pred EEEECCHHCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCC-CC-CCEEEE---E----ECCHHHHHHHHHCCCCC- T ss_conf 99976035079999999996378985799972999999974745-68-866999---9----88999999999759997- Q ss_pred CEEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 3166751277887988----6889899999999999879878541587771 Q gi|254781120|r 311 AKINLIPFNPWPGCEY----LCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 (384) Q Consensus 311 ~~vNLIp~N~~~~~~~----~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~D 357 (384) -.||+=..+..+|... -.-+++.+++|. .|.+.|+.+.+|..-... T Consensus 103 ~~iniG~~~~~~g~~~i~~~v~l~~ee~e~lk-~l~~~Gv~i~~Q~vP~~~ 152 (165) T 1vsq_C 103 TSVNVGGMAFRQGKTQVNNAVSVDEKDIEAFK-KLNARGIELEVRKVSTDP 152 (165) T ss_dssp SEEEEEECCCCTTSEECSSSCEECHHHHHHHH-HHHHTTCEEEECSSTTSC T ss_pred CEEEECCCCCCCCCEEEECCEECCHHHHHHHH-HHHHCCCEEEEEECCCCC T ss_conf 87997677568997698131613999999999-999769879999896997 No 19 >>1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (B:215-338) Probab=54.37 E-value=11 Score=18.14 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=27.3 Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 872699988899999999832545316675127 Q gi|254781120|r 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 (384) Q Consensus 287 vli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N 319 (384) -+|.+.|-++.|.+++.++++.+..+||++|=- T Consensus 10 Niig~~~~~~~D~~eikrll~~~Gi~v~~l~d~ 42 (124) T 1m1n_B 10 NIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDP 42 (124) T ss_dssp EEECCSCCCHHHHHHHHHHHHHHTCCEEESSCC T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEECCH T ss_conf 897885677342999999999929944771584 No 20 >>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=53.64 E-value=15 Score=17.17 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=36.7 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH Q ss_conf 66585735899899999999869985457755899999998717999678334788999998 Q gi|254781120|r 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384) Q Consensus 3 ~~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384) .....++..++.+++.+||.++|++. |. .-..++++...+.+..+....-+.| T Consensus 12 ~~~~~~~~~w~~~~V~~WL~~~~l~~----y~-----~~F~~~~i~g~~~L~~l~~~dL~~l 64 (97) T 2dl0_A 12 EICRKPVSPGCISSVSDWLISIGLPM----YA-----GTLSTAGFSTLSQVPSLSHTCLQEA 64 (97) T ss_dssp SCCCCCCCCSCCCSHHHHHHHHTCGG----GH-----HHHHHHTCCSTTSGGGCCHHHHHHH T ss_pred HHCCCCCCCCCHHHHHHHHHHCCCHH----HH-----HHHHHCCCCHHHHHHHCCHHHHHHC T ss_conf 33039999563879999999887966----99-----9999938641999987439899883 No 21 >>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* (A:40-51,A:321-452) Probab=53.44 E-value=5.7 Score=20.35 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=31.8 Q ss_pred CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC Q ss_conf 86132244111027898999999999999722203444434344454586110144101454 Q gi|254781120|r 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384) Q Consensus 128 C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384) .+||. |+.|+. +|..+++...+++.+............+..+.++.+||.--..+ T Consensus 8 ~~~~~-G~eGy~------~i~~~~~~~a~yl~~~L~~~g~~~i~~~~~~~p~~~vv~~~~~~ 62 (144) T 2dgk_A 8 ATFCQ-GREGYT------KVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKD 62 (144) T ss_dssp SCCSC-HHHHHH------HHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECT T ss_pred CCCCC-CCHHHH------HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCC T ss_conf 10016-530689------99999999999999999868984999778887525899995457 No 22 >>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} (A:69-148,A:245-289) Probab=51.08 E-value=17 Score=16.82 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=44.4 Q ss_pred CCCCHHHHHHHHHHHCCCCCE-E--EEEECCC----C------CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 998889999999983254531-6--6751277----8------87988688989999999999987987854158777 Q gi|254781120|r 292 INDSPRDALNLIKILKGIPAK-I--NLIPFNP----W------PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 (384) Q Consensus 292 vNDs~e~a~~L~~ll~~~~~~-v--NLIp~N~----~------~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~ 356 (384) -.=+.++.++|++-++...++ | |||--+. . +...+..|......+|.+.|.+.||.|+.--..|. T Consensus 31 PtL~~~~L~~la~~Lk~~GI~~I~G~iviD~s~f~~~~~~~gw~~dD~~~Pa~~a~~~fa~~L~~~gv~v~~~~~~~~ 108 (125) T 1w5d_A 31 PTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYTPAGYALDLFKQSLKKQGITVKGDIKTGE 108 (125) T ss_dssp TTCCHHHHHHHHHHHHHTTCCEESSCEEEECTTSCSCCSCTTCCGGGTTBHHHHHHHHHHHHHHHTTCEESSCEEECC T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCC T ss_conf 988755699999999970875002547851665555444688875543223468999999999974915436422223 No 23 >>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} (A:) Probab=47.87 E-value=7.1 Score=19.65 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=53.6 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC---HHHHCCCCHHHHHHHHHCCCCCCCCEEE Q ss_conf 9866585735899899999999869985457755899999998717999---6783347889999986202257870234 Q gi|254781120|r 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD---FQGMSDISQEVRHLLNQHFSIIYPEIVD 77 (384) Q Consensus 1 M~~~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~---f~~MtnLpk~lR~~L~e~~~i~~l~iv~ 77 (384) |..+....+...+.+++..++..+|.|. | -+|..++..++..+ +.+-.++|.+... .|..+..-.++. T Consensus 1 M~~~~~~~~~~~~~~~~~~i~kaLsdp~-----R-l~IL~~L~~~~~~~v~ela~~l~~s~stvS---~HLkL~~aGli~ 71 (99) T 2zkz_A 1 MTVFVDHKIEYXSLEDDAELLKTXAHPX-----R-LKIVNELYKHKALNVTQIIQILKLPQSTVS---QHLCKXRGKVLK 71 (99) T ss_dssp ----------CCCHHHHHHHHHHHCSHH-----H-HHHHHHHHHHSCEEHHHHHHHHTCCHHHHH---HHHHHHBTTTBE T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHCCHH-----H-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHH---HHHHHHHHCCEE T ss_conf 9505534546036999999999948999-----9-999999972899469999999886988999---999999829805 Q ss_pred EEECCCCCCCEEE Q ss_conf 6531454430377 Q gi|254781120|r 78 EKISCDGTRKWLL 90 (384) Q Consensus 78 ~~~S~DGT~K~L~ 90 (384) .. .+|...|-. T Consensus 72 ~~--r~G~~~~Y~ 82 (99) T 2zkz_A 72 RN--RQGLEIYYS 82 (99) T ss_dssp EE--EETTEEEEE T ss_pred EE--EECCEEEEE T ss_conf 89--987889999 No 24 >>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1 (1:232-260,1:447-511) Probab=46.75 E-value=20 Score=16.35 Aligned_cols=38 Identities=18% Similarity=0.439 Sum_probs=29.3 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCC Q ss_conf 7358998999999998699854577558999999987179996783347 Q gi|254781120|r 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56 (384) Q Consensus 8 ~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnL 56 (384) ...|+|.++|.+-+. +-+.|.+|++.+++.++.+.+.+ T Consensus 38 ~~rGws~~eL~eEle-----------~Rk~VLeyM~ekgIrDY~~Vs~i 75 (94) T 2oap_1 38 DFLGVSVQEVYDEXL-----------SRKRYLELXLKRGIRNYKEVTRY 75 (94) T ss_dssp HHHTSCHHHHHHHHH-----------HHHHHHHHHHHTTCCCHHHHHHH T ss_pred HHCCCCHHHHHHHHH-----------HHHHHHHHHHHCCCCCHHHHHHH T ss_conf 875999899999999-----------99999999998699999999999 No 25 >>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* (A:120-235) Probab=45.58 E-value=21 Score=16.23 Aligned_cols=76 Identities=12% Similarity=0.000 Sum_probs=47.8 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 89999999999986258945999998726999888999999998325453166751277887988688989999999999 Q gi|254781120|r 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 (384) Q Consensus 262 ~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L 341 (384) ++++..+.. +.. ...++|.+ +.|=. -.-+++.-++.+..+|.+|-.++.... ..-+.+..+.+++.| T Consensus 12 ~~~~~~~~~-~~~--~~~~~v~I----iGgG~----~GiE~A~~l~~~g~~v~li~~~~~~l~--~~~~~~~~~~~~~~l 78 (116) T 2gqw_A 12 TLEDARRIQ-AGL--RPQSRLLI----VGGGV----IGLELAATARTAGVHVSLVETQPRLMS--RAAPATLADFVARYH 78 (116) T ss_dssp SHHHHHHHH-TTC--CTTCEEEE----ECCSH----HHHHHHHHHHHTTCEEEEEESSSSSST--TTSCHHHHHHHHHHH T ss_pred EEHHCCCHH-HHC--CCCCCEEE----ECCCC----CCCCCCCCCCCCEEEEEEECCCCCCCC--CCCCHHHHHHHHHHH T ss_conf 001000001-112--56763089----72411----111112221221035776425550012--246577899999986 Q ss_pred HHCCCEEEE Q ss_conf 987987854 Q gi|254781120|r 342 KRSGYSSPI 350 (384) Q Consensus 342 ~~~Gi~~ti 350 (384) ++.|+.+.. T Consensus 79 ~~~GV~~~~ 87 (116) T 2gqw_A 79 AAQGVDLRF 87 (116) T ss_dssp HHTTCEEEE T ss_pred HHCCEEEEC T ss_conf 521103411 No 26 >>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:45-75,A:314-427) Probab=45.26 E-value=20 Score=16.31 Aligned_cols=100 Identities=10% Similarity=-0.084 Sum_probs=46.0 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC Q ss_conf 98999999999999722203444434344454586110144101454454289999996037684577877536888513 Q gi|254781120|r 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 (384) Q Consensus 143 t~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~ 222 (384) -..|+.+|+....+++.+.......... .+..-++||..-.|+|....+- .+.|. ..| |.|++. T Consensus 31 ~G~e~~~~l~ena~yl~~~L~~~G~~i~----~~~~~spIv~i~i~~~~~~~~l----~~~L~-~~G-------I~v~~~ 94 (145) T 2w8t_A 31 MAHEKRERLWSNARALHGGLKAMGFRLG----TETCDSAIVAVMLEDQEQAAMM----WQALL-DGG-------LYVNMA 94 (145) T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTCEES----CSSCCSSEEEEEESSHHHHHHH----HHHHH-HTT-------EECEEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCEEEEEECCHHHHHHH----HHHHH-HCC-------CEEEEE T ss_conf 3999999999999999999996599768----8999998799997999999999----99998-389-------418778 Q ss_pred CCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 8741478860125651799840455113444123312578999999999998 Q gi|254781120|r 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 (384) Q Consensus 223 Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~ 274 (384) ..+ .- -.....+=+|+|+.+. +=.|+.+++++++-. T Consensus 95 ~~P-av----P~~~~~iRis~t~~~T-----------~edId~li~aL~~i~ 130 (145) T 2w8t_A 95 RPP-AT----PAGTFLLRCSICAEHT-----------PAQIQTVLGMFQAAG 130 (145) T ss_dssp CTT-TS----CTTCEEEEEECCTTCC-----------HHHHHHHHHHHHHHH T ss_pred CCC-CC----CCCCEEEEEEECCCCC-----------HHHHHHHHHHHHHHH T ss_conf 999-88----9997069998475589-----------999999999999999 No 27 >>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic acid, lyase; HET: ACO PG4; 1.95A {Escherichia coli str} (A:584-731) Probab=44.47 E-value=15 Score=17.17 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=20.7 Q ss_pred HHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCC Q ss_conf 99999998717999678334788999998620225 Q gi|254781120|r 36 SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 (384) Q Consensus 36 ~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i 70 (384) .|||+||+ +++..=+.-.--+.-++..|.+...- T Consensus 57 sQiWQWi~-hg~~l~dg~~vt~~lv~~~l~ee~~~ 90 (148) T 1p7t_A 57 QHIANWLR-HGILTKEQVQASLENMAKVVDQQNAG 90 (148) T ss_dssp HHHHHHHH-TTSSCHHHHHHHHHHHHHHHHHHTTT T ss_pred HHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999997-57878999999999999998634589 No 28 >>3iar_A Adenosine deaminase; purine metabolism, structural genomics, structural genomics consortium, SGC, acetylation, disease mutation; HET: 3D1; 1.52A {Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 1a4m_A* 1a4l_A* ... (A:61-239) Probab=44.28 E-value=21 Score=16.09 Aligned_cols=93 Identities=8% Similarity=-0.095 Sum_probs=49.5 Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCC---CCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCCCCCCCC Q ss_conf 41233125789999999999986258---94599999872699988899999999832545---3166751277887988 Q gi|254781120|r 253 ILVPINRKYPLEMLIDACRHYPGLSN---ARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEY 326 (384) Q Consensus 253 ~lmPi~~~~~l~~l~~a~~~y~~~~~---~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~---~~vNLIp~N~~~~~~~ 326 (384) ..+-..+..+++++++++.+-.+... +=.+.+-|.+.+ ..+++.+....++....+ |-++|-- ++.++ T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rlI~~~~R--~~~~e~~~~~~~~~~~~~~~vvG~dl~G----~E~~~ 126 (179) T 3iar_A 53 PWNQAEGDLTPDEVVALVGQGLQEGERDFGVKARSILCCMR--HQPNWSPKVVELCKKYQQQTVVAIDLAG----DETIP 126 (179) T ss_dssp GGGCCCCSCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEET--TCGGGHHHHHHHHHHTTTTTEEEEEEES----CTTST T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECC--CCCHHHHHHHHHHHHHCCCCEEEEECCC----CCCCC T ss_conf 25566358889999999999999977507558989998327--8929999999999864458467750368----77788 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 6889899999999999879878541 Q gi|254781120|r 327 LCSDQKDIVTFSECIKRSGYSSPIR 351 (384) Q Consensus 327 ~~~~~~~i~~F~~~L~~~Gi~~tiR 351 (384) .+..-.....+.+.+++.|+.+|+- T Consensus 127 ~~~~~~~~~~~~~~a~~~gl~~t~H 151 (179) T 3iar_A 127 GSSLLPGHVQAYQEAVKSGIHRTVH 151 (179) T ss_dssp TGGGCHHHHHHHHHHHHHTCEEEEE T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 6256799999999999849904432 No 29 >>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A* (A:394-432) Probab=42.59 E-value=4 Score=21.46 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=28.1 Q ss_pred EECCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEE Q ss_conf 5314544303775247777898155443023467733898 Q gi|254781120|r 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 (384) Q Consensus 79 ~~S~DGT~K~L~~l~d~~~~dg~~IEsVlip~~~r~T~Cv 118 (384) -..+||+.|--|= .+|..+-.-+||++.+.|.|+ T Consensus 6 flnedG~~Kt~Fy------K~Gkklkyy~mPfGsG~s~C~ 39 (39) T 3b6h_A 6 FLNPDGSEKKDFY------KDGKRLKNYNMPWGAGHNHCL 39 (39) T ss_dssp TBCTTSSBCCCCE------ETTEECSCSCCTTEETTEECS T ss_pred CCCCCCCCCCCCC------CCCCCCCCCEECCCCCCCCCC T ss_conf 2798755444421------002578877108899876681 No 30 >>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} (A:) Probab=38.82 E-value=26 Score=15.51 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=35.9 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHH----CCCC- Q ss_conf 10145445428999999603768457787753688851387414788601256517998404551134441----2331- Q gi|254781120|r 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL----VPIN- 258 (384) Q Consensus 184 fMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~l----mPi~- 258 (384) +.|+| -.-|..+....+ +.|+. ++||.=-...++.+.+-.++---=|-...|..+++.+ .|+. T Consensus 68 ~~~~~--~~~~~~l~~~~~----~~Gi~------~~~t~~d~~~~~~l~~~~~~~kI~S~~~~n~~lL~~~a~~~kPvil 135 (262) T 1zco_A 68 FQGYG--EKALRWMREAAD----EYGLV------TVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLL 135 (262) T ss_dssp CCCCT--HHHHHHHHHHHH----HHTCE------EEEECCCGGGHHHHHHHCSEEEECGGGTTCHHHHHHHTTSSSCEEE T ss_pred CCCCC--HHHHHHHHHHHH----HCCEE------EEEEECCHHHHHHHCCEEEEEEECHHHCCCHHHHHHHHCCCCEEEE T ss_conf 55651--178999998775----31511------4666351765543246558999551430227999987516860898 Q ss_pred --C-CCCHHHHHHHHHHHHH Q ss_conf --2-5789999999999986 Q gi|254781120|r 259 --R-KYPLEMLIDACRHYPG 275 (384) Q Consensus 259 --~-~~~l~~l~~a~~~y~~ 275 (384) . ...++++..|++.+.. T Consensus 136 ~s~g~~~~~e~~~a~~~i~~ 155 (262) T 1zco_A 136 KRGMGNTIQELLYSAEYIMA 155 (262) T ss_dssp ECCTTCCHHHHHHHHHHHHT T ss_pred ECCCCHHHHHHHHHHHHHHH T ss_conf 55532026666645557522 No 31 >>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} (A:) Probab=38.37 E-value=26 Score=15.46 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=40.1 Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC Q ss_conf 98889999999983254531667512778879886889899999999999879878541587 Q gi|254781120|r 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 (384) Q Consensus 293 NDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~sr 354 (384) ++...++..|.++++...+.-=.|- ||....+.+.+..+.+.+|.+.|++.++++..=-.| T Consensus 34 ~~~~~~~~~l~~li~~~~v~~iVvG-lP~~~~g~~~~~~~~i~~f~~~l~~~~i~v~~~DEr 94 (98) T 1iv0_A 34 KTLEEDVEALLDFVRREGLGKLVVG-LPLRTDLKESAQAGKVLPLVEALRARGVEVELWDER 94 (98) T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEE-CCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCS T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 7865899999999987362507816-897789991889999999999986479989998789 No 32 >>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} (A:1-246) Probab=37.94 E-value=23 Score=15.85 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=6.9 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8999999999998 Q gi|254781120|r 262 PLEMLIDACRHYP 274 (384) Q Consensus 262 ~l~~l~~a~~~y~ 274 (384) +++++.+++.+.. T Consensus 197 ~~~~~~~~l~~~~ 209 (246) T 2e5a_A 197 TCEVVINAVATEY 209 (246) T ss_dssp CHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 9999999999999 No 33 >>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A, isocitrate lyase, persistence, GLCB, structural genomics, PSI; 2.10A {Mycobacterium tuberculosis} (A:580-741) Probab=37.76 E-value=23 Score=15.91 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=15.5 Q ss_pred HHHHHHHHHCCCCCHHHHCCCCHHHH-HHHHHC Q ss_conf 99999998717999678334788999-998620 Q gi|254781120|r 36 SQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQH 67 (384) Q Consensus 36 ~QI~~wiy~k~v~~f~~MtnLpk~lR-~~L~e~ 67 (384) .|||+|++ +++.-=+.-. +.+++. ..|.+. T Consensus 63 ~QlWQWi~-hg~~l~dg~~-vT~~lv~~~l~ee 93 (162) T 1n8i_A 63 QLLANWLR-HGVITSADVR-ASLERMAPLVDRQ 93 (162) T ss_dssp HHHHHHHH-TTSSCHHHHH-HHHHHHHHHHHHH T ss_pred HHHHHHHH-CCCCCHHHHH-HHHHHHHHHHHHH T ss_conf 99999996-4788899999-9999999998751 No 34 >>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A* (A:399-532) Probab=37.20 E-value=21 Score=16.16 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=8.5 Q ss_pred HHHHHHHHHCCCC Q ss_conf 9999999871799 Q gi|254781120|r 36 SQIWKWIYVRGIR 48 (384) Q Consensus 36 ~QI~~wiy~k~v~ 48 (384) .|||+|+. +++. T Consensus 57 ~QlWQWi~-hg~~ 68 (134) T 3cuz_A 57 TSIWQWIH-HQKT 68 (134) T ss_dssp HHHHHHHH-TTCB T ss_pred HHHHHHHH-CCCC T ss_conf 99999997-6777 No 35 >>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} (A:) Probab=36.49 E-value=28 Score=15.25 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=34.9 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH Q ss_conf 585735899899999999869985457755899999998717999678334788999998 Q gi|254781120|r 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384) Q Consensus 5 ~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384) ..+++..++.+++.+|+..+|++. |. .-.-+++++.++.+..+..+.-+.| T Consensus 2 ~~~~~~~w~~~~V~~WL~~~~l~~----y~-----~~F~~~~i~g~~~L~~l~~~~L~~l 52 (82) T 1b4f_A 2 EKTRPDYTSFNTVDEWLEAIKMGQ----YK-----ESFANAGFTSFDVVSQMMMEDILRV 52 (82) T ss_dssp ----CCCCCCSSHHHHHHHTTCGG----GH-----HHHHHTTCCSHHHHTTCCHHHHHHT T ss_pred CCCCCCCCCCCHHHHHHHHCCCHH----HH-----HHHHHCCCCCHHHHHHCCHHHHHHC T ss_conf 999999985360999998887399----99-----9999869894999988889999882 No 36 >>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} (A:) Probab=36.42 E-value=28 Score=15.24 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=21.4 Q ss_pred CCCCCHHHHHHHHHH---CCCCCCCCCCHHH--HHHHHHHHCC Q ss_conf 358998999999998---6998545775589--9999998717 Q gi|254781120|r 9 LIGMMREELEEALLK---IGIPQRHVRMRTS--QIWKWIYVRG 46 (384) Q Consensus 9 L~~ls~~EL~~~l~~---~G~p~~~~~fRa~--QI~~wiy~k~ 46 (384) -++||.+|+.+|..+ .|+. -+|+. |=|+-.|.+. T Consensus 59 rY~LS~eEf~~W~~~~~rhge~----aLRat~lq~yRq~ye~q 97 (101) T 2oa4_A 59 TYGLSDEEFNSWVSALAEHGKD----ALKVTALKKYRQLLEHH 97 (101) T ss_dssp TTCSSHHHHHHHHHHHHCCCSS----SSCCHHHHHHHHTTSCC T ss_pred HHCCCHHHHHHHHHHHHHHHHH----HHHHCCHHHHHHHHHHH T ss_conf 9698999999999999998499----88453289999999753 No 37 >>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} (A:) Probab=35.98 E-value=28 Score=15.20 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=36.3 Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH Q ss_conf 6585735899899999999869985457755899999998717999678334788999998 Q gi|254781120|r 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384) Q Consensus 4 ~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384) ....++..++.+++.+|+.++|++. |. .-.-++++++.+....+..+.-+.| T Consensus 15 ~~~~~~~~w~~~~V~~WL~~~gl~~----Y~-----~~F~~~~i~g~~~L~~l~~~dL~~l 66 (90) T 3h8m_A 15 YFQGTPDFTTFCSVGEWLQAIKMER----YK-----DNFTAAGYNSLESVARMTIEDVMSL 66 (90) T ss_dssp ----CCCCCCCSSHHHHHHHTTCGG----GH-----HHHHHTTCCSHHHHHTCCHHHHHHT T ss_pred CCCCCCCCCCCCCHHHHHHHCCCHH----HH-----HHHHHCCCCCHHHHHHCCHHHHHHC T ss_conf 5479999986262999998885899----99-----9999848872999977889999785 No 38 >>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} (A:) Probab=34.62 E-value=30 Score=15.05 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=26.9 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCCCC Q ss_conf 99999999832545316675127788798868898999999999998-79878541587771001 Q gi|254781120|r 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360 (384) Q Consensus 297 e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~-~Gi~~tiR~srG~DI~a 360 (384) .++..|.++++...+.-=+|- ||........+..+.+..|.+.|.+ .++++..--.++.-..| T Consensus 40 ~~~~~l~~li~~~~~~~iViG-lP~~~~g~~~~~a~~v~~f~~~L~~~~~l~v~~vDEr~TT~~A 103 (138) T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVG-LPLNXDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEA 103 (138) T ss_dssp ECHHHHHHHHHHHCCSEEEEE-EEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC T ss_pred HHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH T ss_conf 689999998642487389964-4347778757899999999999998629996997366459999 No 39 >>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:1-210) Probab=34.57 E-value=30 Score=15.04 Aligned_cols=98 Identities=15% Similarity=0.063 Sum_probs=49.6 Q ss_pred CCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCC---CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCC--- Q ss_conf 411102789899999999999972220344443434-44545---86110144101454454289999996037684--- Q gi|254781120|r 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM-VIPSV---GRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--- 207 (384) Q Consensus 135 ~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~-~~~~~---~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~--- 207 (384) |+|| ++.+..||-+|--.+++.+............ ..... -....+|.|.|+|-...--......+..+... T Consensus 5 k~gy-~~~~~kei~~~~~~~~~~~~~i~~~~~~i~~~~i~~~~~~l~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~ 83 (210) T 1moq_A 5 KGIY-RHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCD 83 (210) T ss_dssp CTTC-SSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCSSHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEE T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 2898-308889998999999999998761686204430021798873088899996418999999999999985484329 Q ss_pred ----C-----CCCCCCC--EEEEEECCCCHHHHHHHC Q ss_conf ----5-----7787753--688851387414788601 Q gi|254781120|r 208 ----M-----GLSFSKR--RITLSTSGFVPNIARVGE 233 (384) Q Consensus 208 ----~-----g~~~~~r--~ITvST~Gi~p~I~~la~ 233 (384) . ...+.+. =|.+|.+|-.+.+.+.++ T Consensus 84 ~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~e~~~~~~ 120 (210) T 1moq_A 84 VEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLR 120 (210) T ss_dssp EEEHHHHHTSCCCCCTTEEEEEEESSSCCHHHHHHHH T ss_pred EEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHH T ss_conf 9806065324777799978999778899679999999 No 40 >>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomics initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus HB8} (B:338-453) Probab=33.87 E-value=31 Score=14.96 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=27.7 Q ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-----CCCCHHHHHHHHHHHHH Q ss_conf 88999999998325453166751277887988-----68898999999999998 Q gi|254781120|r 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEY-----LCSDQKDIVTFSECIKR 343 (384) Q Consensus 295 s~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~-----~~~~~~~i~~F~~~L~~ 343 (384) +...+.++++.+......++.+.|-.+|...+ ..-+.+.++.|.+.|.+ T Consensus 46 ~~~~~~~~~~~L~~~Gi~v~~~~~P~~p~~~lRi~vt~~~t~edid~~i~~l~~ 99 (116) T 1wyu_B 46 EGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGA 99 (116) T ss_dssp TTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 899899999999865998875667677899699972788999999999999999 No 41 >>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=33.52 E-value=31 Score=14.92 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=36.5 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHH Q ss_conf 5857358998999999998699854577558999999987179996783347889999986 Q gi|254781120|r 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 (384) Q Consensus 5 ~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~ 65 (384) ...++..++.+++.+||..+|++. | ..-..+++++..+.+..+..++.+.|. T Consensus 13 ~~~~~~~w~~~~V~~WL~~lgl~~----y-----~~~F~~~~i~g~~ll~~~~~~~L~~lg 64 (99) T 2eao_A 13 DRSIPDFTAFTTVDDWLSAIKMVQ----Y-----RDSFLTAGFTSLQLVTQMTSEDLLRIG 64 (99) T ss_dssp CCCCCCTTSCCBHHHHHHTTTCGG----G-----HHHHHHHTCCBHHHHTTCCHHHHHHHT T ss_pred CCCCCCCCCHHHHHHHHHHCCCHH----H-----HHHHHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 899988861638999999886799----9-----999998692869999886899999938 No 42 >>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grg_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... (A:186-247) Probab=32.48 E-value=32 Score=14.80 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=38.0 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 9999983254531667512778879886889899999999999879878 Q gi|254781120|r 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 (384) Q Consensus 300 ~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~ 348 (384) -+++..+..+.++|.++-..|.. +..-+.+-.+.+.+.|++.||.+ T Consensus 15 ~E~A~~l~~~g~~Vtive~~~~i---l~~~d~~~~~~~~~~l~~~GI~~ 60 (62) T 3dk9_A 15 VEMAGILSALGSKTSLMIRHDKV---LRSFDSMISTNCTEELENAGVEV 60 (62) T ss_dssp HHHHHHHHHTTCEEEEECSSSSS---CTTSCHHHHHHHHHHHHHTTCEE T ss_pred CEEEEEEEECCCCCCCEECCCCC---CCCCCCCCCHHHHHHHHCCCCEE T ss_conf 02200012012344310102211---23542111024566541232101 No 43 >>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} (A:41-110) Probab=32.33 E-value=32 Score=14.79 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=27.3 Q ss_pred CCCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCC Q ss_conf 998889999999983254-531667512778879 Q gi|254781120|r 292 INDSPRDALNLIKILKGI-PAKINLIPFNPWPGC 324 (384) Q Consensus 292 vNDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~ 324 (384) |=|+.++|.++.++++.- ..+++.||.|.+... T Consensus 34 VV~~~~~A~~~i~~lk~~~~Gr~tfipL~~i~~~ 67 (70) T 1gxl_A 34 VVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGS 67 (70) T ss_dssp EESSHHHHHHHHHHHHHHTCEEEEEEETTTSCCC T ss_pred EECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 9798899999998754414872598623321224 No 44 >>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein structure initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A (A:) Probab=31.95 E-value=33 Score=14.74 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=49.2 Q ss_pred CCCCHHHHHHHHHHHCCCC-CEEEEEECCCCCC--CCCCCCC----HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC Q ss_conf 9988899999999832545-3166751277887--9886889----8999999999998798785415877710011200 Q gi|254781120|r 292 INDSPRDALNLIKILKGIP-AKINLIPFNPWPG--CEYLCSD----QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 (384) Q Consensus 292 vNDs~e~a~~L~~ll~~~~-~~vNLIp~N~~~~--~~~~~~~----~~~i~~F~~~L~~~Gi~~tiR~srG~DI~aACGQ 364 (384) +-=+.+..+.+...-.+-+ +.||||.|++..- ....-.+ .+....+...|.+.|-.+.+|-....-+.|..++ T Consensus 6 ~~~~~~~~~~~~~~~~~~pv~mlNll~~~~~aY~i~~~~i~d~e~y~~Y~~~~~p~l~~~GG~~i~~g~~~~~leG~~~~ 85 (143) T 3hhl_A 6 IDPTKEVFAQFRANDREGPIHXLNLVRLRPRAAYPDGRETTGAEAYAAYGRDSGPVSERLGGXVVWQGQFELXLIGPQDE 85 (143) T ss_dssp CSCCHHHHHHHHHCCCSSCEEEEEEEEECSBCCCTTCCCCBHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEESCTTC T ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCC T ss_conf 68499999999827999957999810046557888888888699999999999999997398599995024413146778 No 45 >>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} (A:1-74,A:392-410) Probab=31.83 E-value=21 Score=16.11 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=20.3 Q ss_pred EEEECCC----CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 6751277----887988688989999999999987987854 Q gi|254781120|r 314 NLIPFNP----WPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 (384) Q Consensus 314 NLIp~N~----~~~~~~~~~~~~~i~~F~~~L~~~Gi~~ti 350 (384) +|+|.|. .++.++-.-..+.-++|.+.|+++|+.|.. T Consensus 33 ~l~P~~~~~lLfddi~~~~~A~~EHd~fv~~Lr~~GVeV~~ 73 (93) T 1s9r_A 33 YITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVE 73 (93) T ss_dssp GGCCGGGHHHHTCSSCCCHHHHHHHHHHHHHHHHTTTCEEE T ss_pred HHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE T ss_conf 74592115664367677999999999999999997899999 No 46 >>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=31.66 E-value=29 Score=15.12 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=29.6 Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HCCCEEEECCCCCC Q ss_conf 879886889899999999999-87987854158777 Q gi|254781120|r 322 PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGL 356 (384) Q Consensus 322 ~~~~~~~~~~~~i~~F~~~L~-~~Gi~~tiR~srG~ 356 (384) +|.+|+.|+.-.+.....+|+ .++|..+|.+..|- T Consensus 51 egI~Fr~P~~ygi~~Le~IL~~~~~I~FvIkrp~~P 86 (89) T 2dn5_A 51 DDIPFRNPNTYDIHRLEKILKAREHVRMVIINQSGP 86 (89) T ss_dssp TTCCCCCSSSCCHHHHHHHHTTTTTCEEEESSCCCC T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 998578977468899999997147628998258999 No 47 >>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), structural genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} (A:30-41,A:303-397) Probab=31.48 E-value=19 Score=16.40 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=20.8 Q ss_pred CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 61322441110278989999999999997222 Q gi|254781120|r 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 (384) Q Consensus 129 ~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~ 160 (384) ..|..|+.|+. |+.+|+....+++.+ T Consensus 8 ~~~~~G~eG~~------e~~~~l~~~a~yl~~ 33 (107) T 3f9t_A 8 SXCSNGREGQR------KIVNECXENTLYLYK 33 (107) T ss_dssp CSCCCHHHHHH------HHHHHHHHHHHHHHH T ss_pred ECCCCHHHHHH------HHHHHHHHHHHHHHH T ss_conf 67998677799------999999999999999 No 48 >>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} (A:126-227) Probab=30.92 E-value=34 Score=14.62 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=37.5 Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 99999983254531667512778879886889899999999999879878541 Q gi|254781120|r 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 (384) Q Consensus 299 a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR 351 (384) +-+++..+....++|.||--+|.... +.-+.+-.+.+.+.|++.|+.+..- T Consensus 33 GlE~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~~~~~~~l~~~gv~i~~~ 83 (102) T 3klj_A 33 GIELAQAIIDSGTPASIGIILEYPLE--RQLDRDGGLFLKDKLDRLGIKIYTN 83 (102) T ss_dssp HHHHHHHHHHHTCCEEEECSSSSSCT--TTSCHHHHHHHHHHHHTTTCEEECS T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCC--CCCCHHHHHHHHHHHHHCCEEEEEC T ss_conf 67899999962992799996153112--3357899999999876277599958 No 49 >>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain; 2.00A {Mus musculus} (A:) Probab=29.11 E-value=36 Score=14.41 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=37.6 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHH Q ss_conf 857358998999999998699854577558999999987179996783347889999986 Q gi|254781120|r 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 (384) Q Consensus 6 K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~ 65 (384) ......++.+++.+||.++|++. |. .-..++++...+.+..+...+.+.|. T Consensus 18 ~~~~~~w~~~~V~~WL~~igl~~----Y~-----~~F~~~~idg~~ll~~~~~~~L~~lg 68 (94) T 1b0x_A 18 PSSPEFSAVVSVGDWLQAIKMDR----YK-----DNFTAAGYTTLEAVVHMSQDDLARIG 68 (94) T ss_dssp -----CCSSCCHHHHHHHTTCGG----GH-----HHHHHTTCCSHHHHTTCCHHHHHHHT T ss_pred CCCCCCCCCCHHHHHHHHCCCHH----HH-----HHHHHCCCCCHHHHHHCCHHHHHHHC T ss_conf 88999996208999999887898----88-----99998696869999886799998837 No 50 >>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} (A:) Probab=28.71 E-value=36 Score=14.47 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=36.0 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH Q ss_conf 85735899899999999869985457755899999998717999678334788999998 Q gi|254781120|r 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384) Q Consensus 6 K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384) ..+...++.+++.+|+..+|++. |. .-..++++++++.+..+..+.-..| T Consensus 18 ~~~~~~w~~~~V~~WL~~lgl~~----Y~-----~~F~~~~i~g~~~L~~lt~~dL~~l 67 (86) T 2k4p_A 18 GSHMSGLGEAGMSAWLRAIGLER----YE-----EGLVHNGWDDLEFLSDITEEDLEEA 67 (86) T ss_dssp ----CCCCSCSSHHHHHTTTCGG----GH-----HHHHTTTCCCHHHHTTCCHHHHHHT T ss_pred CCCCCCCCCCHHHHHHHHCCCHH----HH-----HHHHHCCCCCHHHHHHCCHHHHHHC T ss_conf 98867898266999999885799----99-----9999969975699866989999885 No 51 >>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} (A:) Probab=28.69 E-value=37 Score=14.36 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=23.9 Q ss_pred CHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 11344412331257899999999999862589459999987269998889999999983254531667 Q gi|254781120|r 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 (384) Q Consensus 248 ~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNL 315 (384) +.++...+++.....++.|.+.++... . ++-+-| -.+.+.+..|.+.|......+.. T Consensus 4 ~~i~~~~~~~~~~~K~~~l~~ll~~~~--~-~k~iIF--------~~~~~~~~~l~~~L~~~~~~~~~ 60 (172) T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLE--F-NQVVIF--------VKSVQRCIALAQLLVEQNFPAIA 60 (172) T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSC--C-SSEEEE--------CSSHHHHHHHHHHHHHTTCCEEE T ss_pred CCEEEEEEEECHHHHHHHHHHHHHHCC--C-CCEEEE--------EEEECHHHHHHHHHHHCCCCCCC T ss_conf 688999999576999999999997278--8-848999--------70030225556776520344210 No 52 >>1esx_A VPR protein; helix, amphipatic, turn, viral protein; NMR {Synthetic} (A:) Probab=28.37 E-value=37 Score=14.32 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=42.5 Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCC Q ss_conf 89999999986998545775589999999871799967833478899999862022578 Q gi|254781120|r 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72 (384) Q Consensus 14 ~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~ 72 (384) ++||++-...+ +| +--.-++.+|||..+-..|+.+.-+=+-+...|--+|.+.+ T Consensus 23 LeElk~EAvrH-Fp----r~~L~~lgqyiy~~yGdt~egv~a~iriLQ~~LFiHfR~GC 76 (96) T 1esx_A 23 LEELKNEAVRH-FP----RIWLHSLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGC 76 (96) T ss_dssp HHHHHHHHHHS-TT----TCSHHHHHHHHHHHSSSSSSHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHC-CC----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999873-99----99999999999980187599999999999999999998278 No 53 >>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* (A:60-136,A:229-272) Probab=28.37 E-value=37 Score=14.32 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=44.4 Q ss_pred EECCCCC---CHHHHHHHHHHHCCCCCE-E--EEEECCCCCCC-----CCC---CCCHHHHHHHHHHHHHCCCEEEECCC Q ss_conf 7269998---889999999983254531-6--67512778879-----886---88989999999999987987854158 Q gi|254781120|r 288 MLKGIND---SPRDALNLIKILKGIPAK-I--NLIPFNPWPGC-----EYL---CSDQKDIVTFSECIKRSGYSSPIRTP 353 (384) Q Consensus 288 li~gvND---s~e~a~~L~~ll~~~~~~-v--NLIp~N~~~~~-----~~~---~~~~~~i~~F~~~L~~~Gi~~tiR~s 353 (384) .|+|--| +.++...|++-++....+ | |||--+..-.. .|. -|.....+.|.+.|.+.||.++-.-. T Consensus 24 ~i~G~GDPtLt~~~L~~la~~Lk~~GI~~I~G~iiiD~S~f~~~~~~pgw~~~D~pa~~aa~~f~~~l~~~Gv~~~~~~~ 103 (121) T 3a3d_A 24 IVSFTGDPDLTRGQLYSLLAELKKQGIKKINGDLVLDTSVFSSHDRGLGWIWNDNTDAYAAAIIQRQLRKLGIEFNGKVL 103 (121) T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHTTCCEECSCEEEECTTBCSCSSCTTCBGGGCHHHHHHHHHHHHHHHTTCEECCCEE T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 99834799889899999999999618752404323023325665457776435673667999999999863873356544 Q ss_pred CCC Q ss_conf 777 Q gi|254781120|r 354 RGL 356 (384) Q Consensus 354 rG~ 356 (384) +|. T Consensus 104 ~~~ 106 (121) T 3a3d_A 104 LPQ 106 (121) T ss_dssp CCC T ss_pred CCC T ss_conf 467 No 54 >>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} (B:210-292) Probab=27.98 E-value=38 Score=14.28 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=28.1 Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 872699988899999999832545316675127 Q gi|254781120|r 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 (384) Q Consensus 287 vli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N 319 (384) -+|.|.+-++.|.++|-+++..+....+++|=. T Consensus 12 NilpG~~~~pgDi~elK~i~~~fGl~~~iLpD~ 44 (83) T 1qgu_B 12 NLVTGFETYLGNFRVLKRMMEQMAVPCSLLSDP 44 (83) T ss_dssp EEECCSCCCHHHHHHHHHHHHHHTCCEEESSCT T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCEEECCCC T ss_conf 896146788345999999999819955765770 No 55 >>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} (A:13-98) Probab=27.91 E-value=37 Score=14.34 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=44.2 Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCHHHHCCC-CHHHHHHHHHCCCCCCCCEEEEEECCC Q ss_conf 989999999986998545775589999999871-79996783347-889999986202257870234653145 Q gi|254781120|r 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDI-SQEVRHLLNQHFSIIYPEIVDEKISCD 83 (384) Q Consensus 13 s~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k-~v~~f~~MtnL-pk~lR~~L~e~~~i~~l~iv~~~~S~D 83 (384) -.+-+..++++.|.+ --.+|+|+.+.+. +..+|-+-.-| |-+.++.|-+---.+..+++.+..|.| T Consensus 9 ~~e~i~~~L~e~GY~-----v~~kkVfRA~~K~lgk~nfPd~~GLs~~D~ke~LYeL~i~Ps~~li~~l~~~~ 76 (86) T 2zg6_A 9 FYEKVYQVLKDNGYD-----LDLRKVFRAYAKAXGXINYPDEDGLEHVDPKDFLYILGIYPSERLVKELKEAD 76 (86) T ss_dssp THHHHHHHHHHTTCC-----CCHHHHHHHHHHHGGGCCC-----CCCCCHHHHHHHHTCCCCHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999984999-----99999999998753010013456663314999999826664899999999998 No 56 >>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (A:1-273) Probab=27.91 E-value=25 Score=15.57 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEE-ECCCC--HHHHH----HHCCCCCCEEEEEECCCC Q ss_conf 542899999960376845778775368885-13874--14788----601256517998404551 Q gi|254781120|r 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLS-TSGFV--PNIAR----VGEEIGVMLAISLHAVSN 248 (384) Q Consensus 191 l~N~d~v~~ai~~l~~~~g~~~~~r~ITvS-T~Gi~--p~I~~----la~~~~~~LAiSLha~~~ 248 (384) -..++.+...++.+. .+++..|.+. |+|.. ..+.+ +.+..+.++.+++|.-|| T Consensus 145 ~~~~~~~~~~~~~~~-----~~g~~~i~l~Dt~G~~~P~~~~~li~~l~~~~~~~i~l~~H~Hnd 204 (273) T 1nvm_A 145 MIPAEKLAEQGKLME-----SYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHN 204 (273) T ss_dssp SSCHHHHHHHHHHHH-----HHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCT T ss_pred CCCHHHHHHHHHHHH-----HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 665234457888888-----608631102542024687999999999998627755404773588 No 57 >>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} (A:153-278) Probab=27.85 E-value=38 Score=14.26 Aligned_cols=79 Identities=10% Similarity=-0.092 Sum_probs=55.1 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 89999999999986258945999998726999888999999998325453166751277887988688989999999999 Q gi|254781120|r 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 (384) Q Consensus 262 ~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L 341 (384) .+++..+.. ++.+ . .+++++ +.+=.-..|-|..++..++.+.++|.+|--.+... ....+.+..+.+.+.| T Consensus 14 ~~~d~~~~~-~~~~-~-~~~i~i----vGaG~~G~E~a~~~~~~~~~~g~~vtii~~~~~~l--~~~~~~~~~~~~~~~l 84 (126) T 1m6i_A 14 KIGDFRSLE-KISR-E-VKSITI----IGGGFLGSELACALGRKARALGTEVIQLFPEKGNM--GKILPEYLSNWTMEKV 84 (126) T ss_dssp SHHHHHHHH-HHHH-H-CSEEEE----ECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT--TTTSCHHHHHHHHHHH T ss_pred HHHHHHHHH-HHHH-C-CCEEEE----ECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHHHHHHHHHH T ss_conf 355699999-7773-2-976999----88884113567765565304674389931333332--0123267766666566 Q ss_pred HHCCCEEE Q ss_conf 98798785 Q gi|254781120|r 342 KRSGYSSP 349 (384) Q Consensus 342 ~~~Gi~~t 349 (384) ++.|+.+. T Consensus 85 ~~~gv~v~ 92 (126) T 1m6i_A 85 RREGVKVM 92 (126) T ss_dssp HTTTCEEE T ss_pred HHCCCEEE T ss_conf 51596230 No 58 >>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* (A:) Probab=27.39 E-value=39 Score=14.20 Aligned_cols=119 Identities=18% Similarity=0.101 Sum_probs=74.5 Q ss_pred CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 11102789899999999999972220344443434445458611014410145445428999999603768457787753 Q gi|254781120|r 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 (384) Q Consensus 136 ~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r 215 (384) .-..|+.+..+.++++..+-+++.+ .|.++.-..++-++-|-.+.+.+.+.++.+. ..+.. T Consensus 124 ~~~~~~~~~~~~~~~~~~~i~~a~~--------------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~ 184 (337) T 3ble_A 124 LEKQLGKTPKEFFTDVSFVIEYAIK--------------SGLKINVYLEDWSNGFRNSPDYVKSLVEHLS-----KEHIE 184 (337) T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHH--------------TTCEEEEEEETHHHHHHHCHHHHHHHHHHHH-----TSCCS T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHH--------------CCCEEEEEECCCCCCCCCCCCHHHHHHHHHH-----HHCCC T ss_conf 1121012088898888899999975--------------4975998631344443345302456667787-----63123 Q ss_pred EEEEE-ECCCC--HHHHHHHCCC---CCCEEEEEECCCCH-----------------HHHHHCCCCCC---CCHHHHHHH Q ss_conf 68885-13874--1478860125---65179984045511-----------------34441233125---789999999 Q gi|254781120|r 216 RITLS-TSGFV--PNIARVGEEI---GVMLAISLHAVSND-----------------LRNILVPINRK---YPLEMLIDA 269 (384) Q Consensus 216 ~ITvS-T~Gi~--p~I~~la~~~---~~~LAiSLha~~~~-----------------~R~~lmPi~~~---~~l~~l~~a 269 (384) .|.+. |+|.. ..+..+...+ -.++.|++|.-|+- +-..+.++..+ -++++++.+ T Consensus 185 ~i~l~Dt~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~An~laAl~aGa~~vd~s~~G~G~r~Gn~~le~~v~~ 264 (337) T 3ble_A 185 RIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTT 264 (337) T ss_dssp EEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHH T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHH T ss_conf 32036344223135667999999964899547986051256777899999975972662244554567677608899998 Q ss_pred HHHH Q ss_conf 9999 Q gi|254781120|r 270 CRHY 273 (384) Q Consensus 270 ~~~y 273 (384) ++.. T Consensus 265 L~~~ 268 (337) T 3ble_A 265 IHDK 268 (337) T ss_dssp HHHH T ss_pred HHHC T ss_conf 6423 No 59 >>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens} (A:) Probab=26.93 E-value=39 Score=14.15 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=34.4 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH Q ss_conf 85735899899999999869985457755899999998717999678334788999998 Q gi|254781120|r 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384) Q Consensus 6 K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384) ..+...++.+++.+||..+|++. | .+-...+++.+++.+.++..+.-..| T Consensus 18 ~~~~~~w~~~~V~~WL~~igl~~----Y-----~~~F~~~~i~g~~~L~~l~~~dL~~l 67 (100) T 2kg5_A 18 GSHMAAPQDLDIAVWLATVHLEQ----Y-----ADTFRRHGLATAGAARGLGHEELKQL 67 (100) T ss_dssp --CCSCCTTCBHHHHHGGGTCGG----G-----HHHHHHTTCCBHHHHTTCCHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHCCCHH----H-----HHHHHHCCCCCHHHHHHCCHHHHHHC T ss_conf 98889997076999999884499----9-----99999869984899987789999874 No 60 >>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=26.46 E-value=40 Score=14.09 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=34.4 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH Q ss_conf 66585735899899999999869985457755899999998717999678334788999998 Q gi|254781120|r 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384) Q Consensus 3 ~~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384) .....++..++.+++.+||..+|++. |. ++ ..+++++..+.+..+..+.-..| T Consensus 4 ~~~~~~~~~w~~~dV~~WL~~~gl~~----y~--~~---F~~~~i~g~~~l~~l~~~~L~~l 56 (91) T 1x40_A 4 GSSGMSSVSEVNVDIKDFLMSINLEQ----YL--LH---FHESGFTTVKDCAAINDSLLQKI 56 (91) T ss_dssp CSTTCCCCSTTCCBHHHHHHTTTCGG----GH--HH---HHHHTCCBSGGGGGCCHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCHH----HH--HH---HHHCCCCCHHHHHHCCHHHHHHC T ss_conf 88998877887637999999885599----99--99---99869886577734889999882 No 61 >>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} (A:93-159,A:246-425) Probab=26.29 E-value=40 Score=14.07 Aligned_cols=45 Identities=9% Similarity=0.187 Sum_probs=36.3 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC----CCHHHHHHHHHHHHHCCCCC Q ss_conf 110278989999999999997222034444343444545861101441014----54454289999996037684 Q gi|254781120|r 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM----GEPLCNFDNVKKSLSIASDS 207 (384) Q Consensus 137 G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGm----GEPl~N~d~v~~ai~~l~~~ 207 (384) ||.=+|+..|+..|+- =+|++|||. |.-.=|.-+|..++++|... T Consensus 40 G~~~~~s~~~~~~~~~--------------------------~~g~~~~~~s~~LG~~iGNalEv~Eai~~L~G~ 88 (247) T 3h5q_A 40 GFHVEIDEATFVKLVN--------------------------ENKVAVVGQSGNLGRAIGNALELQEAIDTLKGQ 88 (247) T ss_dssp TCCCCCCHHHHHHHHH--------------------------HHSEEEECCCSSSSSEEESHHHHHHHHHHHTTC T ss_pred CCCCCCCHHHHHHHHH--------------------------HCCEEEEECHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 2555786788888886--------------------------045599942032326578798999999744276 No 62 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:1-35,B:144-268) Probab=26.05 E-value=41 Score=14.04 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=19.7 Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 72699988899999999832545316675127 Q gi|254781120|r 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 (384) Q Consensus 288 li~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N 319 (384) +|.| -.++.|.++|.+++..+..++|.||-. T Consensus 66 LIg~-~~~~~Dv~eLk~lL~~~Gi~vnvlpd~ 96 (160) T 1mio_B 66 VIPG-FVGPADMREIKRLFEAMDIPYIMFPDT 96 (160) T ss_dssp EECC-SCCHHHHHHHHHHHHHHTCCEEESSCC T ss_pred EECC-CCCCCCHHHHHHHHHHHCCCEEECCCC T ss_conf 9899-887147999999999819966742563 No 63 >>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} (A:184-247) Probab=26.03 E-value=41 Score=14.03 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=38.4 Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 999999832545316675127788798868898999999999998798785 Q gi|254781120|r 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 (384) Q Consensus 299 a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~t 349 (384) .-+++..+..+.++|.+|-..+... ..-+.+-.+...+.|++.|+.+. T Consensus 14 GlE~A~~l~~~g~~Vtiie~~~~il---~~~d~~~~~~~~~~l~~~gv~~~ 61 (64) T 2hqm_A 14 GIELAGVFHGLGSETHLVIRGETVL---RKFDECIQNTITDHYVKEGINVH 61 (64) T ss_dssp HHHHHHHHHHTTCEEEEECSSSSSC---TTSCHHHHHHHHHHHHHHTCEEE T ss_pred HHHHHHHHHHCCCCEEEEEHHCCCC---CCCCHHHHHHHHHHHHHHCCCCC T ss_conf 9999999996498425530012444---33303443345554442010011 No 64 >>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} (A:1-211,A:433-504) Probab=25.80 E-value=29 Score=15.12 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=38.3 Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--CCCCHHHHHH-----H-HHHH---HHCCCEEEECCCC Q ss_conf 8726999888999999998325453166751277887988--6889899999-----9-9999---9879878541587 Q gi|254781120|r 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVT-----F-SECI---KRSGYSSPIRTPR 354 (384) Q Consensus 287 vli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~--~~~~~~~i~~-----F-~~~L---~~~Gi~~tiR~sr 354 (384) +.|.| |||...|..|++.++...+.++.|-.=.+-+.+. --||.=.... + .-.| ...|+.++|+.-. T Consensus 171 viIGG-dgS~t~A~~LaE~~~~~~~~i~VIGVPKTIDNDL~~~~PsnfD~~y~y~LG~~a~~l~~~g~tgyma~v~nl~ 248 (283) T 2f48_A 171 IIIGG-DDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLN 248 (283) T ss_dssp EEEES-HHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTT T ss_pred EEECC-HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 99588-8999999999999997089950897203214675768999899999999999999999859988799986798 No 65 >>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} (C:) Probab=25.28 E-value=42 Score=13.94 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=37.8 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCC------HHHHHHHHHCC-CCCCCCEEEE Q ss_conf 8573589989999999986998545775589999999871799967833478------89999986202-2578702346 Q gi|254781120|r 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS------QEVRHLLNQHF-SIIYPEIVDE 78 (384) Q Consensus 6 K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLp------k~lR~~L~e~~-~i~~l~iv~~ 78 (384) ..+|-+++.++|++.+. ++|+|||.=-..-||-..-+- ..|+..+.+.- .+--|..-++ T Consensus 52 pl~i~~l~~~~L~e~~k--------------eLh~~I~~lE~EkYDle~kvkkq~yEI~eL~~rv~dl~gk~kkp~lkkV 117 (133) T 1j1d_C 52 PLELAGLGFAELQDLAR--------------QLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRV 117 (133) T ss_dssp CCCCTTCCHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCC T ss_pred CCCCCCCCHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 99999989999999999--------------9999999999999779999999887799999999997088678874500 Q ss_pred EECCCCCCCEE Q ss_conf 53145443037 Q gi|254781120|r 79 KISCDGTRKWL 89 (384) Q Consensus 79 ~~S~DGT~K~L 89 (384) ..|.|+--+-| T Consensus 118 r~sad~m~~al 128 (133) T 1j1d_C 118 RISADAMMQAL 128 (133) T ss_dssp CCCHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 46899999998 No 66 >>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A (A:1-258) Probab=24.41 E-value=43 Score=13.82 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=15.7 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 6889899999999999879878541 Q gi|254781120|r 327 LCSDQKDIVTFSECIKRSGYSSPIR 351 (384) Q Consensus 327 ~~~~~~~i~~F~~~L~~~Gi~~tiR 351 (384) ...+.+....+.+.+.+.+.++.+- T Consensus 194 ~~~~~~~~~~~~~~~~~~~~P~~~~ 218 (258) T 2whl_A 194 AGGDANTVRSNIDRVIDQDLALVIG 218 (258) T ss_dssp TTSSHHHHHHHHHHHHTTTCCEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 6785799999999998669988998 No 67 >>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} (A:) Probab=23.24 E-value=46 Score=13.67 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=11.6 Q ss_pred HHCCCCCCCCHHHHHHHHHH Q ss_conf 41233125789999999999 Q gi|254781120|r 253 ILVPINRKYPLEMLIDACRH 272 (384) Q Consensus 253 ~lmPi~~~~~l~~l~~a~~~ 272 (384) +-++| .+|..+++.+.|.+ T Consensus 70 E~i~I-ekw~~deI~efL~e 88 (129) T 2a2p_A 70 ERIPL-SQMTRDEINALVQE 88 (129) T ss_dssp EEEEC-SSSCHHHHHHHHHH T ss_pred EEEEC-CCCCHHHHHHHHHH T ss_conf 89850-21889999999997 No 68 >>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} (C:290-376) Probab=22.65 E-value=47 Score=13.59 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=37.6 Q ss_pred CCCCCHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCC--CHHHHHHHHHCCC Q ss_conf 3589989999-99998699854577558999999987179996783347--8899999862022 Q gi|254781120|r 9 LIGMMREELE-EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLNQHFS 69 (384) Q Consensus 9 L~~ls~~EL~-~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnL--pk~lR~~L~e~~~ 69 (384) -.++++..+. +.-.++|.|. | .+.-++.--+.+.+|+++++. ..+..++|.+.|. T Consensus 11 ~~~~Dl~al~IqRgRDhGlp~----Y--n~~R~~~gl~~~~sf~dl~~~~~d~~~~~~L~~~Y~ 68 (87) T 1d2v_C 11 RIGLDLPALNMQRSRDHGLPG----Y--NAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYG 68 (87) T ss_dssp SSCBCHHHHHHHHHHHTTCCC----H--HHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHS T ss_pred CCCCCHHHHHHHHHHHHCCCC----H--HHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHC T ss_conf 432007788789999728997----8--999998699987879996532189999999999839 No 69 >>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} (A:) Probab=22.38 E-value=37 Score=14.38 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=31.1 Q ss_pred EEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 9840455113444123312578999999999998625894599999 Q gi|254781120|r 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 (384) Q Consensus 241 iSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EY 286 (384) .-|=..++++|..++|. +.+|.+.|.+|...+ |...-||. T Consensus 276 ~~lL~~~p~lr~~lip~-----l~~L~~~C~~Y~~wh-g~~~~~~~ 315 (318) T 1qoy_A 276 RFYVDYDDLMLSLLKEA-----AKKMINTCNEYQKRH-GKKTLFEV 315 (318) T ss_dssp CCCSCCCHHHHHHHHHH-----HHHHHHHHHHHHHHT-TCCSCC-- T ss_pred EEEEEHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-CCCEEECC T ss_conf 78860379999999999-----999999878999860-86420038 No 70 >>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} (A:1-291,A:403-464) Probab=22.15 E-value=48 Score=13.52 Aligned_cols=144 Identities=10% Similarity=0.134 Sum_probs=78.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE-ECCCC--HHHHHHHCCC--CCCEEEEEECCCCH---- Q ss_conf 101441014544542899999960376845778775368885-13874--1478860125--65179984045511---- Q gi|254781120|r 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS-TSGFV--PNIARVGEEI--GVMLAISLHAVSND---- 249 (384) Q Consensus 179 i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvS-T~Gi~--p~I~~la~~~--~~~LAiSLha~~~~---- 249 (384) ...+.|+-+-.|-++.+.+...++.+. .++...|.+. |+|+. ..+.++...+ .+.+.|++|+-++. T Consensus 142 ~~~~~i~~~~s~~~~~~~~~~~~~~l~-----~~gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~i~i~~H~Hnt~Gla~ 216 (353) T 2nx9_A 142 HAQGTLCYTTSPVHNLQTWVDVAQQLA-----ELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELHLHCHSTAGLAD 216 (353) T ss_dssp EEEEEEECCCCTTCCHHHHHHHHHHHH-----HTTCSEEEEEETTSCCCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHH T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHH-----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH T ss_conf 102333215688878999999999874-----269857884267665627999999999986357617898477177899 Q ss_pred -------------HHHHHCCCCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC---CCC Q ss_conf -------------34441233125---78999999999998625894599999872699988899999999832---545 Q gi|254781120|r 250 -------------LRNILVPINRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310 (384) Q Consensus 250 -------------~R~~lmPi~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~---~~~ 310 (384) +=..+-|...+ -+++.++.+++... .. .|+| .+...++++.++ +.. T Consensus 217 an~l~Ai~aGad~IDtsi~glG~~tGn~~tE~lv~~L~~~g-----~~--------t~id--l~~L~~i~~~~~~i~~~~ 281 (353) T 2nx9_A 217 MTLLKAIEAGVDRVDTAISSMSGTYGHPATESLVATLQGTG-----YD--------TGLD--IAKLEQIAAYFRDVRKKY 281 (353) T ss_dssp HHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHHHHTTST-----TC--------CCCC--HHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC-----CC--------CCCC--HHHHHHHHHHHHHHHHHH T ss_conf 99999998399899837878899831687999999986149-----89--------9989--899999999999999985 Q ss_pred CEEEEEEC-CCCCCC--CCCCCCHHHHHH-HHHHHHHCCCE Q ss_conf 31667512-778879--886889899999-99999987987 Q gi|254781120|r 311 AKINLIPF-NPWPGC--EYLCSDQKDIVT-FSECIKRSGYS 347 (384) Q Consensus 311 ~~vNLIp~-N~~~~~--~~~~~~~~~i~~-F~~~L~~~Gi~ 347 (384) +|+ +|+-|. +.-.|..+++.+ ..+.-+..|+. T Consensus 282 -----~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (353) T 2nx9_A 282 -----HAFEGMMKGSPADLIAAEMPTLQDRVLQQAKEQHIT 317 (353) T ss_dssp -----GGGCCSCCSCGGGSSCCCHHHHHHHHHHHHHHTTCC T ss_pred -----CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCC T ss_conf -----266755567803425731589999999999851567 No 71 >>1mrb_A CD7 metallothionein-2A; NMR {Oryctolagus cuniculus} (A:) Probab=22.01 E-value=29 Score=15.10 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=11.3 Q ss_pred CCCHHCCCCCCCCCC Q ss_conf 651004861322441 Q gi|254781120|r 122 VGCSLTCSFCYTGTQ 136 (384) Q Consensus 122 vGC~m~C~FCaTg~~ 136 (384) .-|++||.-|+-|-. T Consensus 5 sccpvgcakcaqgcv 19 (31) T 1mrb_A 5 SCCPPGCAKCAQGCI 19 (31) T ss_dssp SSSCTTCSSCSSSCC T ss_pred CCCCCCHHHHHCCCE T ss_conf 447834777733451 No 72 >>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural genomics, midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} (A:59-113) Probab=21.67 E-value=49 Score=13.45 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=23.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEECC Q ss_conf 798868898999999999998798785415 Q gi|254781120|r 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384) Q Consensus 323 ~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384) +..|.-+|.+.++++.+.|+..|+.+.-.. T Consensus 5 HiaF~v~s~~eVd~~~~~l~a~Gv~i~~~~ 34 (55) T 1xqa_A 5 HVGFPQESEEQVDKINQRLKEDGFLVEPPK 34 (55) T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCCCCCE T ss_pred EEEEEECCCCCHHHHHHHHHHCCEEEECCC T ss_conf 034430233201334446876782772345 No 73 >>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} (A:127-223) Probab=21.58 E-value=42 Score=13.93 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=17.9 Q ss_pred CCCCCCCCCEEEEEECCCCHHHHHHH Q ss_conf 45778775368885138741478860 Q gi|254781120|r 207 SMGLSFSKRRITLSTSGFVPNIARVG 232 (384) Q Consensus 207 ~~g~~~~~r~ITvST~Gi~p~I~~la 232 (384) |.-+.-|.=.|+|||.|-.|.+-+.. T Consensus 6 Pa~v~rg~l~iaIST~G~sP~lar~l 31 (97) T 3dfz_A 6 PAQFSRGRLSLAISTDGASPLLTKRI 31 (97) T ss_dssp CEEEEETTEEEEEECTTSCHHHHHHH T ss_pred EEEEEECCEEEEEECCCCCCHHHHHH T ss_conf 68997288589973389995999999 No 74 >>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} (C:) Probab=21.21 E-value=50 Score=13.39 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=35.1 Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH Q ss_conf 6585735899899999999869985457755899999998717999678334788999998 Q gi|254781120|r 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384) Q Consensus 4 ~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384) ....++..++.+++.+|+.++|++. |- .-.-++++++++.+..+..+.-..| T Consensus 11 ~~~~~~~~w~~~~V~~wL~~~gl~~----y~-----~~F~~~~i~g~~~L~~l~~~dL~~l 62 (86) T 3kka_C 11 RENLYFQGVPFRTVSEWLESIKMQQ----YT-----EHFMAAGYTAIEKVVQMTNDDIKRI 62 (86) T ss_dssp ------------CHHHHHHHTTCGG----GH-----HHHHHTTCCSHHHHHTCCHHHHHHT T ss_pred CCCCCCCCCCHHHHHHHHHHCCCHH----HH-----HHHHHCCCCCHHHHHHCCHHHHHHC T ss_conf 6666536896507999999886299----99-----9999859885898976999999881 No 75 >>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structure initiative; 1.70A {Plasmodium falciparum 3D7} PDB: 2auc_A (A:80-146) Probab=21.20 E-value=32 Score=14.81 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=31.2 Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCC Q ss_conf 99899999999869985457755899999998717999678334 Q gi|254781120|r 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSD 55 (384) Q Consensus 12 ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~Mtn 55 (384) ++.+||++.+..+|.+... --+.++++-+=..|.-+|+++.+ T Consensus 22 I~~~el~~~l~~lg~~~~~--~e~~~~~~d~d~dg~I~~~eF~~ 63 (67) T 2qac_A 22 LTKSQMKNILTTWGDALTD--QEAIDALNAFSSEDNIDYKLFCE 63 (67) T ss_dssp EEHHHHHHHHHHSSSCCCH--HHHHHHHHHHCSSSEEEHHHHHH T ss_pred CCHHHHHHHHHHCCCCCCH--HHHHHHHHHCCCCCCCCHHHHHH T ss_conf 6899999999980899999--99999999649899894999999 No 76 >>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5; 2.73A {Saccharopolyspora erythraea} (A:675-745) Probab=21.16 E-value=50 Score=13.38 Aligned_cols=50 Identities=4% Similarity=0.040 Sum_probs=30.6 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 999998325453166751277887988688989999999999987987854 Q gi|254781120|r 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 (384) Q Consensus 300 ~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~ti 350 (384) .++.+++...+-.|.+=-||. |..---.-+.+.+.++.+.|++.|+.++. T Consensus 14 ~~~~~~~~~~~~~v~iA~~N~-P~~~visG~~~~i~~~~~~l~~~g~~~~~ 63 (71) T 2hg4_A 14 EQAAERIGRFAGALSIASVNG-PRSVVVAGESGPLDELIAECEAEAHKARR 63 (71) T ss_dssp HHHHHHHGGGTTSEEEEEEEE-TTEEEEEECTTHHHHHHHHHHHHTCCEEE T ss_pred HHHHHHHHHCCCCEEEEEECC-CCEEEEECCHHHHHHHHHHHHHCCEEEEE T ss_conf 999999974079489848868-98099978899999999999858921898 No 77 >>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} (A:) Probab=21.15 E-value=32 Score=14.77 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=32.7 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHH Q ss_conf 85735899899999999869985457755899999998717999678 Q gi|254781120|r 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQG 52 (384) Q Consensus 6 K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~ 52 (384) .+.+++++.+|++.-+..+-+.+ |++ +.+.+|.+|..+|++ T Consensus 7 ~p~~~~~~~~e~~~~ir~LEleA----Y~s--vl~Af~Aqg~Lswek 47 (102) T 1uz3_A 7 WPTLLDLSRDECKRILRKLELEA----YAG--VISALRAQGDLTKEK 47 (102) T ss_dssp CCGGGCCCHHHHHHHHHHHHHHH----HHH--HHHHHHHHSSCCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHCCCCCHHH T ss_conf 08899871799999999999999----999--999999728999899 No 78 >>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae} (B:) Probab=21.14 E-value=50 Score=13.38 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=35.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH Q ss_conf 99999999997222034444343444545861101441014544542899999960376845778775368885138741 Q gi|254781120|r 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 (384) Q Consensus 147 Iv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p 226 (384) +..|+-.+...|... ..+...-|+++|||-.-..-=++ ..++.... -+.-.|+.+|+=+++ T Consensus 41 ~~s~vkr~~klL~~~-------------~~~~~~~V~i~g~G~AI~Kai~i---a~~~krr~---~~~~~v~t~tv~v~D 101 (140) T 3iab_B 41 YVSALKRINKFLDSV-------------HKQGSSYVAVLGXGKAVEKTLAL---GCHFQDQK---NKKIEVYTKTIEVLD 101 (140) T ss_dssp HHHHHHHHHHHHHHH-------------HHHTCSEEEEEEEGGGHHHHHHH---HHHHHHTT---CCCEEEEEEEEEEEE T ss_pred HHHHHHHHHHHHHHH-------------HCCCCCEEEEEECCHHHHHHHHH---HHHHCCCC---CEEEEEEECCEEEEE T ss_conf 799999999999777-------------52687389998333789999999---99852068---879999827489987 Q ss_pred HHHH Q ss_conf 4788 Q gi|254781120|r 227 NIAR 230 (384) Q Consensus 227 ~I~~ 230 (384) .+.. T Consensus 102 e~~p 105 (140) T 3iab_B 102 EVIT 105 (140) T ss_dssp ECC- T ss_pred EEEC T ss_conf 4202 No 79 >>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} (A:) Probab=21.10 E-value=42 Score=13.97 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=9.5 Q ss_pred CCCCCCCCHHHHHHHHHHH Q ss_conf 2331257899999999999 Q gi|254781120|r 255 VPINRKYPLEMLIDACRHY 273 (384) Q Consensus 255 mPi~~~~~l~~l~~a~~~y 273 (384) ++| .+|.-+++-+-+.+. T Consensus 78 i~I-~kW~~d~I~efL~ek 95 (126) T 2a4h_A 78 LSI-TKWNTDTVEEFFETH 95 (126) T ss_dssp EEC-SSSSCSHHHHHHHHH T ss_pred EEC-CCCCHHHHHHHHHHH T ss_conf 710-428788999999999 No 80 >>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} (A:) Probab=20.94 E-value=50 Score=13.35 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=59.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCHHHHHHHH Q ss_conf 5789999999999986258945999998726999888999999998325453166751277887988-688989999999 Q gi|254781120|r 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFS 338 (384) Q Consensus 260 ~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~-~~~~~~~i~~F~ 338 (384) ...+++.+++++.|.. . +.-..|+ .+ -.+.++++++++-++. +..+|.++||..|...+ .....+....|. T Consensus 263 ~~g~~~ai~r~~ay~~-~-g~~~~f~----~~-~~~~~~~~~f~~~v~~-~~~~~~~~~~~spsf~~~~~~~~~~~~~~~ 334 (429) T 1f8m_A 263 KNGIEPCIARAKAYAP-F-ADLIWME----TG-TPDLEAARQFSEAVKA-EYPDQMLAYNCSPSFNWKKHLDDATIAKFQ 334 (429) T ss_dssp CCSHHHHHHHHHHHGG-G-CSEEEEC----CS-SCCHHHHHHHHHHHHT-TCTTCEEEEECCTTSCHHHHCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHH-H-HCEEEEE----CC-CCCHHHHHHHHHHHCC-CCHHHHHCCCCCCCCCHHCCCCHHHHHHHH T ss_conf 5789999999998665-1-1739983----48-9999999999986188-753455103886676600135777788889 Q ss_pred HHHHHCCCEEEEC Q ss_conf 9999879878541 Q gi|254781120|r 339 ECIKRSGYSSPIR 351 (384) Q Consensus 339 ~~L~~~Gi~~tiR 351 (384) +.|.+.|+...+= T Consensus 335 ~eL~~~G~~~~~~ 347 (429) T 1f8m_A 335 KELAAMGFKFQFI 347 (429) T ss_dssp HHHHHHTEEEEEE T ss_pred HHHHHCCCCEEEE T ss_conf 9999769758999 No 81 >>3eol_A Isocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3e5b_A (A:1-348) Probab=20.94 E-value=48 Score=13.51 Aligned_cols=200 Identities=18% Similarity=0.133 Sum_probs=107.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCEEEEECCCCHHHHHHHHHHHHHC------CCCC---- Q ss_conf 2789899999999999972220344443434445--458611014410145445428999999603------7684---- Q gi|254781120|r 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP--SVGRKISNIVMMGMGEPLCNFDNVKKSLSI------ASDS---- 207 (384) Q Consensus 140 RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~--~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~------l~~~---- 207 (384) .-++..|++..+-.+.+-...........-...+ ...-++.==.=.|.|.|..=+..|.+.++. |.|. T Consensus 107 ~~v~~~e~~~~~~~i~r~~~~a~~~~~~~~~~~~~~~~~~p~~vD~d~G~g~~~~v~~~v~~~i~aGaagi~lEDq~~~~ 186 (348) T 3eol_A 107 SLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGDPLDAFEIMKAYIEAGAAGVHFEDQLASE 186 (348) T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTTSCCSSSCSCCCEEEECC---CCHHHHHHHHHHHHHHTCSEEEEESBCC-- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 65548779999999999999999899886236665545776576354443237999999999997699789986245766 Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHC---CCCCCEEEEEECCCCHHHHHH---------CC-------------CCCCCC Q ss_conf 57787753688851387414788601---256517998404551134441---------23-------------312578 Q gi|254781120|r 208 MGLSFSKRRITLSTSGFVPNIARVGE---EIGVMLAISLHAVSNDLRNIL---------VP-------------INRKYP 262 (384) Q Consensus 208 ~g~~~~~r~ITvST~Gi~p~I~~la~---~~~~~LAiSLha~~~~~R~~l---------mP-------------i~~~~~ 262 (384) .+......+-.+|+.-.+.+|+...+ ...+.+-| .+-+|..-.+. .+ ..-... T Consensus 187 ~~~~~~~gk~l~~~~e~~~ki~a~~~~~~~~g~~~vi--~aRtda~~a~~i~~~l~~~~~~~~~g~~~~~~~~~~~~~~g 264 (348) T 3eol_A 187 KKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLI--VARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNG 264 (348) T ss_dssp -------CCEECCHHHHHHHHHHHHHHHHHHTCCCEE--EEEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCS T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE--EEECCCHHHCCHHHCCCHHCCCCCCCCCCCCHHHHHHHHCC T ss_conf 5455667764178999999999999756417998599--98454001125121231111554445667663058987267 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHH Q ss_conf 999999999998625894599999872699988899999999832545316675127788798-8688989999999999 Q gi|254781120|r 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECI 341 (384) Q Consensus 263 l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~-~~~~~~~~i~~F~~~L 341 (384) +++.++-.+.|.. . +.-+. +..+ ..+.++++++++-.+ .+..+|...||..|..+ +..-+.+++..|.+.| T Consensus 265 ~~~a~~ra~~ya~-~-g~~~~----~~~~-~~~~~~~~~f~~~~~-~p~p~~~~~~~~sps~~~~~~~~~~~~~~~~~~l 336 (348) T 3eol_A 265 IEPCIARAIAYAP-Y-CDLIW----METS-KPDLAQARRFAEAVH-KAHPGKLLAYNCSPSFNWKKNLDDATIAKFQREL 336 (348) T ss_dssp HHHHHHHHHHHGG-G-CSEEE----ECCS-SCCHHHHHHHHHHHH-HHSTTCCEEEECCSSSCHHHHSCHHHHHHHHHHH T ss_pred HHHHHHHHHHCCC-C-CCEEE----EECC-CCCHHHHHHHHHHCC-CCCHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHH T ss_conf 7999999872504-5-97898----6068-888999999987408-8866666641787655644305610567999999 Q ss_pred HHCCCEEE Q ss_conf 98798785 Q gi|254781120|r 342 KRSGYSSP 349 (384) Q Consensus 342 ~~~Gi~~t 349 (384) .+.|+..- T Consensus 337 ~~lG~~~~ 344 (348) T 3eol_A 337 GAMGYKFQ 344 (348) T ss_dssp HHHTEEEE T ss_pred HHCCCEEE T ss_conf 96683089 No 82 >>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:109-149) Probab=20.72 E-value=51 Score=13.32 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=13.7 Q ss_pred CCCEEEEEECCCCHHHHHH Q ss_conf 7536888513874147886 Q gi|254781120|r 213 SKRRITLSTSGFVPNIARV 231 (384) Q Consensus 213 ~~r~ITvST~Gi~p~I~~l 231 (384) +.=-|.|||.|-.|.+-+. T Consensus 12 g~l~IaIST~G~sP~lak~ 30 (41) T 1pjq_A 12 SPLMVAVSXGGTSPVLARL 30 (41) T ss_dssp TTEEEEEECTTSCHHHHHH T ss_pred CCEEEEEECCCCCCHHHHH T ss_conf 8859986159988188999 No 83 >>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5; 1.50A {Thermomonospora fusca} (A:) Probab=20.58 E-value=14 Score=17.44 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=6.1 Q ss_pred CCCEEEEEECCC Q ss_conf 651799840455 Q gi|254781120|r 236 GVMLAISLHAVS 247 (384) Q Consensus 236 ~~~LAiSLha~~ 247 (384) ......|.|.-. T Consensus 188 ~~~~~~~~~~y~ 199 (302) T 1bqc_A 188 TGNTVFSIHMYG 199 (302) T ss_dssp TCCEEEEEEESG T ss_pred CCCEEEEECCCC T ss_conf 416589951577 No 84 >>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} (A:) Probab=20.28 E-value=52 Score=13.25 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=30.0 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH Q ss_conf 899899999999869985457755899999998717999678334788999998 Q gi|254781120|r 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384) Q Consensus 11 ~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384) .++++++.+|+..+|++. | .+-..+++++..+.+..+...+.+.| T Consensus 4 ~w~~~~V~~WL~~igl~~----Y-----~~~F~~~~i~g~~ll~~l~~~~l~~l 48 (81) T 1ucv_A 4 GSSGLTVGDWLDSIRMGR----Y-----RDHFAAGGYSSLGMVLRMNAQDVRAL 48 (81) T ss_dssp CCCCSBHHHHHHHTTCGG----G-----HHHHHHTTCCBHHHHTTCCHHHHHHH T ss_pred CCCCCCHHHHHHHCCCHH----H-----HHHHHHHCCCHHHHHHHCCHHHHHHC T ss_conf 999870999998886099----9-----99999809780999987799999876 Done!