Query gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 384
No_of_seqs 137 out of 1593
Neff 5.3
Searched_HMMs 23785
Date Wed Jun 1 01:17:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781120.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8f_A Pyruvate formate-lyase 99.9 5.1E-20 2.2E-24 167.6 20.5 205 113-349 19-244 (245)
2 3can_A Pyruvate-formate lyase- 99.6 6E-14 2.5E-18 122.7 15.9 157 181-351 6-181 (182)
3 2yx0_A Radical SAM enzyme; pre 99.4 2.5E-11 1.1E-15 103.3 15.7 273 44-344 8-305 (342)
4 2z2u_A UPF0026 protein MJ0257; 99.2 9.1E-10 3.8E-14 91.8 13.2 261 56-344 2-283 (311)
5 2a5h_A L-lysine 2,3-aminomutas 99.2 7E-09 2.9E-13 85.2 17.6 265 39-343 20-317 (416)
6 1tv8_A MOAA, molybdenum cofact 99.0 1.7E-07 6.9E-12 75.0 19.2 177 115-323 15-201 (340)
7 3iix_A Biotin synthetase, puta 98.8 9.7E-07 4.1E-11 69.3 16.5 197 121-351 60-270 (348)
8 2qgq_A Protein TM_1862; alpha- 98.7 5.4E-06 2.3E-10 63.8 18.0 183 112-325 2-200 (304)
9 1r30_A Biotin synthase; SAM ra 98.3 0.00029 1.2E-08 51.0 18.4 201 122-357 74-294 (369)
10 1olt_A Oxygen-independent copr 94.2 0.37 1.6E-05 28.0 17.6 203 124-348 62-284 (457)
11 3p3v_A PTS system, N-acetylgal 88.3 1.3 5.5E-05 23.9 6.4 109 237-356 32-151 (163)
12 3eye_A PTS system N-acetylgala 82.4 1.7 7.2E-05 23.1 4.7 108 236-355 33-152 (168)
13 1nrz_A PTS system, sorbose-spe 76.8 4.1 0.00017 20.3 5.4 107 239-356 31-148 (164)
14 1vsq_C Mannose-specific phosph 74.0 4.8 0.0002 19.8 6.5 109 237-356 32-151 (165)
15 1j5x_A Glucosamine-6-phosphate 71.9 2.5 0.0001 21.9 3.0 22 295-316 272-293 (342)
16 1ble_A Fructose permease; phos 70.9 5.6 0.00024 19.3 7.8 110 236-356 29-149 (163)
17 2d73_A Alpha-glucosidase SUSB; 63.8 4.4 0.00019 20.0 2.9 75 267-347 370-464 (738)
18 2f46_A Hypothetical protein; 7 57.8 9.6 0.0004 17.6 5.1 25 327-351 84-108 (156)
19 3jug_A Beta-mannanase; TIM-bar 52.8 9.4 0.00039 17.6 3.1 107 182-309 140-264 (345)
20 2whl_A Beta-mannanase, baman5; 51.6 12 0.0005 16.9 4.4 40 235-286 180-220 (294)
21 1tz7_A 4-alpha-glucanotransfer 51.6 11 0.00046 17.1 3.3 27 295-321 434-460 (505)
22 1wky_A Endo-beta-1,4-mannanase 45.7 14 0.00061 16.2 4.2 88 181-287 124-229 (464)
23 2qv7_A Diacylglycerol kinase D 45.5 15 0.00061 16.2 5.2 11 80-90 87-97 (337)
24 2f1f_A Acetolactate synthase i 44.8 15 0.00063 16.1 4.5 73 276-352 77-151 (164)
25 1esw_A Amylomaltase; (beta,alp 44.4 15 0.00063 16.1 3.4 26 295-320 428-453 (500)
26 1uzx_A VPS23, STP22, vacuolar 41.7 15 0.00065 16.0 2.8 51 37-93 20-74 (169)
27 1j9i_A GPNU1 DBD;, terminase s 39.3 18 0.00074 15.6 2.8 41 8-50 10-57 (68)
28 3g68_A Putative phosphosugar i 37.1 16 0.00068 15.9 2.3 15 112-126 109-123 (352)
29 3lg3_A Isocitrate lyase; conse 36.0 20 0.00084 15.2 5.2 157 184-350 160-350 (435)
30 2poc_A D-fructose-6-, isomeras 35.5 20 0.00085 15.1 3.0 13 114-126 126-138 (367)
31 2zkz_A Transcriptional repress 35.3 10 0.00043 17.3 1.0 76 1-88 1-80 (99)
32 3hem_A Cyclopropane-fatty-acyl 34.6 21 0.00088 15.0 6.6 147 141-310 102-259 (302)
33 2fgc_A Acetolactate synthase, 34.6 11 0.00048 17.0 1.2 50 300-352 127-177 (193)
34 2ptm_A Hyperpolarization-activ 33.3 22 0.00092 14.9 4.2 56 13-69 13-69 (198)
35 3bpz_A Potassium/sodium hyperp 33.0 22 0.00093 14.9 4.6 56 13-69 14-70 (202)
36 1zco_A 2-dehydro-3-deoxyphosph 32.4 23 0.00095 14.8 6.5 12 262-273 142-153 (262)
37 3civ_A Endo-beta-1,4-mannanase 32.0 23 0.00096 14.7 6.3 79 188-288 178-257 (343)
38 1mrb_A CD7 metallothionein-2A; 31.5 11 0.00046 17.2 0.6 15 122-136 5-19 (31)
39 1vs1_A 3-deoxy-7-phosphoheptul 31.2 24 0.00099 14.7 6.3 23 288-310 150-172 (276)
40 1n8i_A Probable malate synthas 30.9 23 0.00096 14.8 2.2 28 183-210 350-379 (741)
41 1uz3_A EMSY protein; chromatin 30.1 23 0.00097 14.7 2.1 40 7-52 8-47 (102)
42 2dl0_A SAM and SH3 domain-cont 30.0 25 0.001 14.5 2.8 50 5-63 14-63 (97)
43 3elg_A Uncharacterized peripla 29.7 25 0.001 14.5 4.9 48 52-104 9-56 (128)
44 3cux_A Malate synthase; TIM ba 29.6 21 0.00089 15.0 1.9 20 53-72 59-78 (528)
45 1vra_A Arginine biosynthesis b 29.4 24 0.001 14.6 2.1 16 210-225 123-138 (208)
46 3fa4_A 2,3-dimethylmalate lyas 29.0 26 0.0011 14.4 8.5 149 141-322 61-221 (302)
47 2bky_A DNA/RNA-binding protein 27.8 27 0.0011 14.3 2.8 36 179-223 8-43 (97)
48 3eol_A Isocitrate lyase; seatt 27.5 27 0.0011 14.2 4.4 156 185-350 154-345 (433)
49 2k4p_A Phosphatidylinositol-3, 27.3 26 0.0011 14.3 2.0 48 8-64 20-67 (86)
50 1uta_A FTSN, MSGA, cell divisi 27.0 28 0.0012 14.2 3.4 65 287-355 11-80 (81)
51 2zj3_A Glucosamine--fructose-6 25.4 23 0.00097 14.7 1.4 14 113-126 135-148 (375)
52 1f8m_A Isocitrate lyase, ICL; 24.3 31 0.0013 13.8 8.1 200 142-351 113-347 (429)
53 1p6t_A Potential copper-transp 23.8 31 0.0013 13.7 11.1 123 214-352 5-143 (151)
54 1l7b_A DNA ligase; BRCT, autos 23.5 16 0.00067 15.9 0.3 28 120-151 3-30 (92)
55 2gv0_A Lysozyme C; hydrolase; 23.5 32 0.0013 13.7 2.4 28 12-43 4-31 (131)
56 2dn5_A General transcription f 22.8 33 0.0014 13.6 2.1 34 322-355 51-85 (89)
57 2p6n_A ATP-dependent RNA helic 22.6 33 0.0014 13.6 3.0 23 284-307 153-175 (191)
58 3cuz_A MSA, malate synthase A; 22.5 33 0.0014 13.6 1.9 24 194-220 224-247 (532)
59 2aex_A Coproporphyrinogen III 22.4 8.4 0.00035 18.0 -1.3 95 24-120 5-101 (346)
60 3ivs_A Homocitrate synthase, m 22.1 34 0.0014 13.5 4.8 110 140-271 142-276 (423)
61 2f06_A Conserved hypothetical 21.8 18 0.00075 15.6 0.3 64 282-349 69-136 (144)
62 3kka_C Ephrin type-A receptor 21.1 35 0.0015 13.4 3.4 49 6-63 13-61 (86)
63 3k2c_A Peptidyl-prolyl CIS-tra 21.0 35 0.0015 13.4 3.1 31 196-226 161-191 (193)
64 1x1n_A 4-alpha-glucanotransfer 20.5 36 0.0015 13.3 3.2 26 295-320 449-474 (524)
No 1
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.87 E-value=5.1e-20 Score=167.64 Aligned_cols=205 Identities=19% Similarity=0.326 Sum_probs=159.3
Q ss_pred CCEEEEEECCCCHHCCCCCC---CCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 73389884065100486132---244111027898999999999999722203444434344454586110144101454
Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 113 r~T~CvSSQvGC~m~C~FCa---Tg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
+...+|-+| ||.+.|.||. |......+.++..|+++++........ ..+..|.|+| ||
T Consensus 19 G~r~~vf~~-GCN~~C~~C~n~~~~~~~~~~~~~~~e~~~ei~~~~~~~~-----------------~~~~~v~~sG-GE 79 (245)
T 3c8f_A 19 GIRFITFFQ-GCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMN-----------------ASGGGVTASG-GE 79 (245)
T ss_dssp SEEEEEEES-CCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHT-----------------STTCEEEEEE-SC
T ss_pred CCEEEEECC-CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHC-----------------CCCCEEECCC-CC
T ss_conf 638999878-7478898999713418679918899999999999999752-----------------5787585355-56
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH----HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHH
Q ss_conf 45428999999603768457787753688851387414----78860125651799840455113444123312578999
Q gi|254781120|r 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 (384)
Q Consensus 190 Pl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~----I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~ 265 (384)
|++++|.+...++.+.+ .|+ ++.++|.|..+. ++++... -....+|+++++++...+++.. +.+.
T Consensus 80 P~l~~~~l~~l~~~~k~-~g~-----~~~l~TnG~~~~~~~~~~~l~~~-~d~v~id~~~~~~~~~~~~~g~----~~~~ 148 (245)
T 3c8f_A 80 AILQAEFVRDWFRACKK-EGI-----HTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVGV----SNHR 148 (245)
T ss_dssp GGGGHHHHHHHHHHHHT-TTC-----CEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHSS----CSHH
T ss_pred CCCCHHHHHHHHHHHHH-HCC-----CEEEECCCCCCCCHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHCC----CCHH
T ss_conf 53469999999998886-438-----47997788655534566665235-7579984354678899987386----5089
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC--CEEEEEECCCCC-------CCC-----CCCCCH
Q ss_conf 999999998625894599999872699988899999999832545--316675127788-------798-----868898
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWP-------GCE-----YLCSDQ 331 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~--~~vNLIp~N~~~-------~~~-----~~~~~~ 331 (384)
+++.++...+ . +.++.++++++.|+||+.++..+++++++.++ ..|+++||++.. +.+ .++|+.
T Consensus 149 vl~~l~~l~~-~-g~~v~i~~~~i~g~~d~~e~i~~i~~~i~~l~~~~~v~l~py~~~g~~k~~~~~~~y~~~~~~~p~~ 226 (245)
T 3c8f_A 149 TLEFAKYLAN-K-NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKK 226 (245)
T ss_dssp HHHHHHHHHH-H-TCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCH
T ss_pred HHHHHHHHHH-C-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCH
T ss_conf 9999999997-8-9989999999899489999999999999857997558884476166411665185454457899999
Q ss_pred HHHHHHHHHHHHCCCEEE
Q ss_conf 999999999998798785
Q gi|254781120|r 332 KDIVTFSECIKRSGYSSP 349 (384)
Q Consensus 332 ~~i~~F~~~L~~~Gi~~t 349 (384)
+.++++.+++++.|+.|.
T Consensus 227 e~l~~~~~~~~~~G~~V~ 244 (245)
T 3c8f_A 227 ETMERVKGILEQYGHKVM 244 (245)
T ss_dssp HHHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHHHHHCCCEEE
T ss_conf 999999999998599067
No 2
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.60 E-value=6e-14 Score=122.73 Aligned_cols=157 Identities=16% Similarity=0.285 Sum_probs=126.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH-H-HHHHHCCCCCCEEEEEECCCCHHHHHHCCCC
Q ss_conf 1441014544542899999960376845778775368885138741-4-7886012565179984045511344412331
Q gi|254781120|r 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-N-IARVGEEIGVMLAISLHAVSNDLRNILVPIN 258 (384)
Q Consensus 181 NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p-~-I~~la~~~~~~LAiSLha~~~~~R~~lmPi~ 258 (384)
.|+|.| |||+++.|.+...++.+.+ .|+ +++++|.|..+ . ++++. .....+.+|+++.+++..+++...
T Consensus 6 gVt~sG-GEP~l~~~~l~ei~~~~k~-~g~-----~~~l~TNG~l~~e~~~~~~-~~~d~~~~sl~~~~~e~~~~i~g~- 76 (182)
T 3can_A 6 GVTFCG-GEPLLHPEFLIDILKRCGQ-QGI-----HRAVDTTLLARKETVDEVM-RNCELLLIDLKSMDSTVHQTFCDV- 76 (182)
T ss_dssp CEEECS-STGGGSHHHHHHHHHHHHH-TTC-----CEEEECTTCCCHHHHHHHH-HTCSEEEEECCCSCHHHHHHHHSS-
T ss_pred CEEEEE-CCHHCCHHHHHHHHHHHHH-CCC-----CEEEECCCCCCHHHHHHHH-HHHHHEECCCCCCCHHHHHHHHCC-
T ss_conf 689983-0350988799999999988-799-----1999817752489999854-322325414233689999988499-
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCCCCC------------
Q ss_conf 2578999999999998625894599999872699988899999999832545---3166751277887------------
Q gi|254781120|r 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPG------------ 323 (384)
Q Consensus 259 ~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~---~~vNLIp~N~~~~------------ 323 (384)
+.+.+++.++... .. +.++.+.+++++|+||+.++..+|+++++.++ ..|++.||++...
T Consensus 77 ---~~~~v~~~i~~l~-~~-~~~v~~~~~vi~~~~~~~~~i~~l~~~i~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 151 (182)
T 3can_A 77 ---PNELILKNIRRVA-EA-DFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNP 151 (182)
T ss_dssp ---CSHHHHHHHHHHH-HT-TCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---------------
T ss_pred ---CHHHHHHHHHHHH-HC-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCC
T ss_conf ---8899998899999-71-985057898878865999999999999985699813899876764552368870863555
Q ss_pred --CCCCCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf --9886889899999999999879878541
Q gi|254781120|r 324 --CEYLCSDQKDIVTFSECIKRSGYSSPIR 351 (384)
Q Consensus 324 --~~~~~~~~~~i~~F~~~L~~~Gi~~tiR 351 (384)
.++.+|+.+.++++.+++++.|+.|+||
T Consensus 152 ~~~~~~~p~~e~~~~~~~~~~~~G~~v~ig 181 (182)
T 3can_A 152 KGYKMQTPSEEVQQQCIQILTDYGLKATIG 181 (182)
T ss_dssp ---CCBCCCHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 578789999999999999999759907849
No 3
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.39 E-value=2.5e-11 Score=103.30 Aligned_cols=273 Identities=15% Similarity=0.149 Sum_probs=169.4
Q ss_pred HCCCCCHHHHCCCCHHHHHHHHHC-CCCC-CCCEEE----EEEC--CCC-CCCEEEECCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 717999678334788999998620-2257-870234----6531--454-430377524777789815544302346773
Q gi|254781120|r 44 VRGIRDFQGMSDISQEVRHLLNQH-FSII-YPEIVD----EKIS--CDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG 114 (384)
Q Consensus 44 ~k~v~~f~~MtnLpk~lR~~L~e~-~~i~-~l~iv~----~~~S--~DG-T~K~L~~l~d~~~~dg~~IEsVlip~~~r~ 114 (384)
+-+....+.++++|+++++.|..+ |.+- .-.-|+ ...| ..| -.|.-|= | |+|= |-
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~k~~y~~~g~hs~vk~c~w~~~~~~~~~~cyk~~fy--------g--i~sh------~c 71 (342)
T 2yx0_A 8 KPGKITVQANPNMPKEVAELFRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFY--------G--IHSH------RC 71 (342)
T ss_dssp ---CCCCCBCCSSCHHHHHHHHHTTCEEEBTTEEECCCTTHHHHHHHCCCCHHHHHH--------C--CCGG------GE
T ss_pred CCCCCHHHCCCCCCHHHHHHHHHCCCEEEECCCCEEECHHHHHHHCCCCCCCCEEEE--------C--CCCC------CE
T ss_conf 234011312889998999999867887973354525533129885579965314330--------6--3320------45
Q ss_pred EEEEEECCCCHHCCCCCCCC---CCHHH---CCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 38988406510048613224---41110---278989999999999997-222034444343444545861101441014
Q gi|254781120|r 115 TLCVSSQVGCSLTCSFCYTG---TQKLV---RNLTAEEILLQVLLARSL-LGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 (384)
Q Consensus 115 T~CvSSQvGC~m~C~FCaTg---~~G~~---RNLt~~EIv~Qv~~~~~~-l~~~~~~~~~~~~~~~~~~~~i~NiVfMGm 187 (384)
.-+-.|-..|.+.|.||... ..+.. .--.+.+|+++++-..+. +....+......... .....+++|+|-|-
T Consensus 72 ~q~tPsl~~CNlrCvfC~r~~~~~~~~~~~~~~d~pe~Ivee~i~~~~~~i~~~~g~~~~~~e~~-~Ea~~~~hvais~~ 150 (342)
T 2yx0_A 72 LQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKF-EEAWNPTHAAISLS 150 (342)
T ss_dssp EEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHH-HHHTSCCEEEECSS
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHCCCCEEEEECC
T ss_conf 87430415202589888998777777665444479899999999999998876426763025666-65248767999578
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHC-C-CCCCEEEEEECCCCHHHHHHCCCCCCCCHH
Q ss_conf 5445428999999603768457787753688851387414-788601-2-565179984045511344412331257899
Q gi|254781120|r 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGE-E-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 (384)
Q Consensus 188 GEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~-~-~~~~LAiSLha~~~~~R~~lmPi~~~~~l~ 264 (384)
|||+++ +.+...++.+.. .|+ ++.+.|.|..|. +.++.. . ....+.|||.|++.+.-+++.-....-.++
T Consensus 151 GEPll~-p~l~eli~~~~~-~gi-----~~~l~TNGtl~~~~~~l~~~~~~~~~l~vSLDa~~~e~~~ki~r~~~~~~~e 223 (342)
T 2yx0_A 151 GEPMLY-PYMGDLVEEFHK-RGF-----TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWE 223 (342)
T ss_dssp SCGGGS-TTHHHHHHHHHH-TTC-----EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHH
T ss_pred CCCCCC-HHHHHHHHHHHH-CCC-----EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCHHH
T ss_conf 775345-559999999986-396-----4999658866117999998747886799835789989999873766767799
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCC--C---CCCCHHHHHHHH
Q ss_conf 999999999862589459999987269998889999999983254-5316675127788798--8---688989999999
Q gi|254781120|r 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCE--Y---LCSDQKDIVTFS 338 (384)
Q Consensus 265 ~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~--~---~~~~~~~i~~F~ 338 (384)
.++++++... .. +.++.+.-+|++|+||. +..++++|++.. |..|-+-+|..+..+. . --|+.+.+.+|.
T Consensus 224 rvl~~L~~L~-~~-g~~~vir~tlv~g~N~~--ei~~~a~li~~~~pdfie~k~y~~~G~s~~~L~~~~mP~~eEv~~fa 299 (342)
T 2yx0_A 224 RILRFLELMR-DL-PTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFA 299 (342)
T ss_dssp HHHHHHHHHT-TC-SSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHH-HC-CCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999999-66-99889999996898766--69999999986599989996038705786546401399889999999
Q ss_pred HHHHHC
Q ss_conf 999987
Q gi|254781120|r 339 ECIKRS 344 (384)
Q Consensus 339 ~~L~~~ 344 (384)
..|...
T Consensus 300 ~~l~~~ 305 (342)
T 2yx0_A 300 EALVKH 305 (342)
T ss_dssp HHHHTT
T ss_pred HHHHHH
T ss_conf 999986
No 4
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.16 E-value=9.1e-10 Score=91.76 Aligned_cols=261 Identities=15% Similarity=0.203 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHC-CCCCCCCEEEEEECCCC-CCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEE-CCCCHHCCCCCC
Q ss_conf 788999998620-22578702346531454-430377524777789815544302346773389884-065100486132
Q gi|254781120|r 56 ISQEVRHLLNQH-FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS-QVGCSLTCSFCY 132 (384)
Q Consensus 56 Lpk~lR~~L~e~-~~i~~l~iv~~~~S~DG-T~K~L~~l~d~~~~dg~~IEsVlip~~~r~T~CvSS-QvGC~m~C~FCa 132 (384)
+|..+++.|..+ |.+..-.-|+ --+ |.+-|. ++|..--.-+..-+++..+=+|- -.+|...|.||.
T Consensus 2 ~~~~~~~~l~k~~y~~~~hs~vk----~c~w~~~~~~-------~~~~cyk~~fygi~sh~c~~~tPs~~~CN~rC~fC~ 70 (311)
T 2z2u_A 2 IPEEIYKILRKQRYQIDGHTAVK----LCGWVRKKML-------EDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCW 70 (311)
T ss_dssp CCHHHHHHHHTTTCEEETTEEEE----CCTTHHHHHT-------TCCCCHHHHHHCCCGGGEEEEESCSSCCSCC-----
T ss_pred CCHHHHHHHHHCCCEEECCCCCE----ECCCHHHHHC-------CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 88799999975786665664630----1403498835-------699555612105245352653357300208794776
Q ss_pred CCC---CHHH-------CCCCHHHHHHHHHHHHHHH-HHCCCCCC-CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 244---1110-------2789899999999999972-22034444-3434445458611014410145445428999999
Q gi|254781120|r 133 TGT---QKLV-------RNLTAEEILLQVLLARSLL-GDFPGCED-IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 (384)
Q Consensus 133 Tg~---~G~~-------RNLt~~EIv~Qv~~~~~~l-~~~~~~~~-~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~a 200 (384)
-.. .|.. .--.+.+|+++++-..+.+ ....+... ...... .....++.+.|-+.|||+++ ..+...
T Consensus 71 r~~~~~~~~~~~~~~~~~~d~pe~Ive~~i~~~~kli~~~~g~~~~v~~e~~-~ea~~~~~iais~~GEP~l~-p~l~el 148 (311)
T 2z2u_A 71 RVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKF-KEALEPKHVAISLSGEPTLY-PYLDEL 148 (311)
T ss_dssp -----------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHH-HHHTSCCEEEECSSSCGGGS-TTHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHCCCCEEEECCCCCCCHH-HHHHHH
T ss_conf 9887877777310134454899999999999999997653267754015666-65237637986268873047-899999
Q ss_pred HHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHC-CCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6037684577877536888513874147886012565179984045511344412-331257899999999999862589
Q gi|254781120|r 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSNA 279 (384)
Q Consensus 201 i~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lm-Pi~~~~~l~~l~~a~~~y~~~~~~ 279 (384)
++.+.+ .| + .+.+.|.|..| +++++-.+..+.|||.|++.+.-+++. |. +..++.++++++... ..
T Consensus 149 i~~~~~-~g--i---~~~l~TNG~~~--d~l~~l~~~~l~vSlDa~~~e~~~~i~r~~--~~~~e~vl~~l~~l~--~~- 215 (311)
T 2z2u_A 149 IKIFHK-NG--F---TTFVVSNGILT--DVIEKIEPTQLYISLDAYDLDSYRRICGGK--KEYWESILNTLDILK--EK- 215 (311)
T ss_dssp HHHHHH-TT--C---EEEEEECSCCH--HHHHHCCCSEEEEECCCSSTTTC----CCC--HHHHHHHHHHHHHHT--TS-
T ss_pred HHHHHH-CC--C---EEEEEECCCCH--HHHHHHCCCEEEEEECCCCHHHHHHHHCCC--CCHHHHHHHHHHHHH--HC-
T ss_conf 999987-59--7---27754154344--789870551588630479999999986756--237999999999998--66-
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-----CCCCCHHHHHHHHHHHHHC
Q ss_conf 4599999872699988899999999832545316675127788798-----8688989999999999987
Q gi|254781120|r 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-----YLCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 280 rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~-----~~~~~~~~i~~F~~~L~~~ 344 (384)
.++.+..++++|.||.+++..+|++.+. +-.|.+-+|.++..+. ...|+.+.+.+|.+.|.+.
T Consensus 216 ~~~vir~tlv~g~Nddi~~~a~l~~~~~--~~fIEvk~~~~~G~s~~~l~~~~~p~~eEv~e~~~~l~~~ 283 (311)
T 2z2u_A 216 KRTCIRTTLIRGYNDDILKFVELYERAD--VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDEN 283 (311)
T ss_dssp SSEEEEEEECTTTTCCGGGTHHHHHHHT--CSEEEEEECC------------CCCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCC--CCEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9879999843677648999999997539--9889996408514664525402599999999999998652
No 5
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.16 E-value=7e-09 Score=85.21 Aligned_cols=265 Identities=15% Similarity=0.213 Sum_probs=145.8
Q ss_pred HHHHHHCCCCCHHHHCC---CCHHHHHHHHHC---CCCCCC----CEEEEEECCCCCCCEEEE-----------CCCCCC
Q ss_conf 99998717999678334---788999998620---225787----023465314544303775-----------247777
Q gi|254781120|r 39 WKWIYVRGIRDFQGMSD---ISQEVRHLLNQH---FSIIYP----EIVDEKISCDGTRKWLLR-----------FPARCI 97 (384)
Q Consensus 39 ~~wiy~k~v~~f~~Mtn---Lpk~lR~~L~e~---~~i~~l----~iv~~~~S~DGT~K~L~~-----------l~d~~~ 97 (384)
|+|-.++.+++.++... |+.+.++.+... |.+..+ ...+.....|--.+-.+- ..|. +
T Consensus 20 w~~ql~~~i~~~~~L~~~l~l~~~~~~~~~~~~~~~p~~vt~yy~~li~~~~p~dPi~rq~~P~~~e~~~~~~~~~Dp-~ 98 (416)
T 2a5h_A 20 WRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDP-L 98 (416)
T ss_dssp HHHHHHTCBCSHHHHHTTSCCCHHHHHHHHTCTTSCCCCBCHHHHTTSCTTCTTCHHHHHHSCCGGGGCCCTTCBSST-T
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCC-C
T ss_conf 999999978899999988298999999999998558874899999863899999878866289989967884444587-3
Q ss_pred C--CCEEEEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCH--HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8--981554430234677338988406510048613224411--102789899999999999972220344443434445
Q gi|254781120|r 98 G--GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK--LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 (384)
Q Consensus 98 ~--dg~~IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G--~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~ 173 (384)
+ +...+..+.=.|++|..+-|+ -.|++.|.||.--..- -...|+..||..=+ +++..
T Consensus 99 ~e~~~~~~~gl~hkY~~rvll~vT--~~Cn~~CrYC~R~~~~~~~~~~l~~~ei~~~i----~yi~~------------- 159 (416)
T 2a5h_A 99 HEDTDSPVPGLTHRYPDRVLLLIT--DMCSMYCRHCTRRRFAGQSDDSMPMERIDKAI----DYIRN------------- 159 (416)
T ss_dssp CTTTSCSBTTEECCSSSEEEEEEE--SCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHH----HHHHT-------------
T ss_pred CCCCCCCCCCCEECCCCEEEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----HHHHH-------------
T ss_conf 212248888840015875899845--75477287989877568643434689999999----99984-------------
Q ss_pred CCCCCCCEEEEECCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCEEEEEECCC--CHH--HHHHHCC--CCCCEEEEEECC
Q ss_conf 4586110144101454454289-99999603768457787753688851387--414--7886012--565179984045
Q gi|254781120|r 174 SVGRKISNIVMMGMGEPLCNFD-NVKKSLSIASDSMGLSFSKRRITLSTSGF--VPN--IARVGEE--IGVMLAISLHAV 246 (384)
Q Consensus 174 ~~~~~i~NiVfMGmGEPl~N~d-~v~~ai~~l~~~~g~~~~~r~ITvST~Gi--~p~--I~~la~~--~~~~LAiSLha~ 246 (384)
...|+.|.+-| ||||.--| .+..-++.+..-. +-+.|.++|-|. .|. ...|.+- -.++ |||++-
T Consensus 160 --~~~I~~V~lTG-GePL~r~d~~L~~li~~l~~i~----~i~~iri~T~~~~~~p~r~~~~L~~~g~~~~n--isldth 230 (416)
T 2a5h_A 160 --TPQVRDVLLSG-GDALLVSDETLEYIIAKLREIP----HVEIVRIGSRTPVVLPQRITPELVNMLKKYHP--VWLNTH 230 (416)
T ss_dssp --CTTCCEEEEEE-SCTTSSCHHHHHHHHHHHHTST----TCCEEEEECSHHHHCGGGCCHHHHHHHGGGCS--EEEEEC
T ss_pred --CCCEEEEEEEC-CCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCE--EEEEEE
T ss_conf --89826999978-9734378899999999998479----98647888067544727779999987742763--899974
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEE-EEECCCCCCCC
Q ss_conf 51134441233125789999999999986258945999998726999888999999998325453166-75127788798
Q gi|254781120|r 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-LIPFNPWPGCE 325 (384)
Q Consensus 247 ~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vN-LIp~N~~~~~~ 325 (384)
.+. +.++. +++.++++... .. |-.|-+.-||++||||+.+....|.+.+....+..- ++..-++.|..
T Consensus 231 ~~h-~~el~--------~~v~~~i~~l~-~~-Gi~vk~n~VllkGvNDd~~~l~~L~~~l~~~gv~pyyi~~~d~~~g~~ 299 (416)
T 2a5h_A 231 FNH-PNEIT--------EESTRACQLLA-DA-GVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLE 299 (416)
T ss_dssp CCS-GGGCC--------HHHHHHHHHHH-HT-TCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCG
T ss_pred CCC-CCCCC--------HHHHHHHHHHH-HC-CCEEEEECEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH
T ss_conf 277-10055--------99999999999-76-994873040567743888999999999986797699998347887432
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 868898999999999998
Q gi|254781120|r 326 YLCSDQKDIVTFSECIKR 343 (384)
Q Consensus 326 ~~~~~~~~i~~F~~~L~~ 343 (384)
+-+.+.++..+..+.+..
T Consensus 300 ~f~v~~~~~~eI~~~l~~ 317 (416)
T 2a5h_A 300 HFRTPVSKGIEIIEGLRG 317 (416)
T ss_dssp GGCCCHHHHHHHHHTTBT
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 156779999999999986
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.00 E-value=1.7e-07 Score=75.04 Aligned_cols=177 Identities=19% Similarity=0.277 Sum_probs=121.5
Q ss_pred EEEEEECCCCHHCCCCCCCCC--------CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 389884065100486132244--------111027898999999999999722203444434344454586110144101
Q gi|254781120|r 115 TLCVSSQVGCSLTCSFCYTGT--------QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 (384)
Q Consensus 115 T~CvSSQvGC~m~C~FCaTg~--------~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMG 186 (384)
.+.||=---|.+.|.||.... +.-.+-||.+||..-+-.+.+ + .+..|.|-|
T Consensus 15 ~lri~IT~rCNL~C~~C~~~~~~~~~~~~~~~~~~Ls~eei~~ii~~~~~-~-------------------gv~~i~ltG 74 (340)
T 1tv8_A 15 DLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-L-------------------GVKKIRITG 74 (340)
T ss_dssp EEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-T-------------------TCCEEEEES
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-C-------------------CCEEEEECC
T ss_conf 57997155217889688964006777776761034899999999999987-6-------------------980999638
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHH
Q ss_conf 4544542899999960376845778775368885138741--47886012565179984045511344412331257899
Q gi|254781120|r 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 (384)
Q Consensus 187 mGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p--~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~ 264 (384)
||||+.- .+...+..+....+ ..-+.++|-|+.. .+++|++..-..+.|||++.+++.-+++.-. ...++
T Consensus 75 -GEPllr~-d~~~~i~~~~~~~~----~~~~~~Tng~ll~~~~~~~L~~~gl~~v~ISld~~~~e~~~~i~g~--~g~~~ 146 (340)
T 1tv8_A 75 -GEPLMRR-DLDVLIAKLNQIDG----IEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNR--NIKAT 146 (340)
T ss_dssp -SCGGGST-THHHHHHHHTTCTT----CCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSS--CCCHH
T ss_pred -CCHHCCH-HHHHHHHHHHHCCC----CCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHC--CCCCH
T ss_conf -8620070-06999987521022----1024210786534213899998499888504677658888776510--56500
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 99999999986258945999998726999888999999998325453166751277887
Q gi|254781120|r 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 (384)
Q Consensus 265 ~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~ 323 (384)
.++++++... .. +-.|.+..+++++.|+. +...++++++..++.+.+|.|=|.+.
T Consensus 147 ~~~~~i~~~~-~~-g~~v~in~vv~~~~N~~--~i~~~~~~a~~~~~~~~~~~~~~~~~ 201 (340)
T 1tv8_A 147 TILEQIDYAT-SI-GLNVKVNVVIQKGINDD--QIIPMLEYFKDKHIEIRFIEFMDVGN 201 (340)
T ss_dssp HHHHHHHHHH-HT-TCEEEEEEEECTTTTGG--GHHHHHHHHHHTTCCEEEEECCCBCS
T ss_pred HHHHHHHHHH-HC-CCCEEEEEEECCCCCHH--HHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 0037999999-87-99879998974886256--68999999984798199999984367
No 7
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=98.78 E-value=9.7e-07 Score=69.34 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=125.2
Q ss_pred CCCCHHCCCCCCCCCC--HHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 0651004861322441--1102-789899999999999972220344443434445458611014410145445428999
Q gi|254781120|r 121 QVGCSLTCSFCYTGTQ--KLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 (384)
Q Consensus 121 QvGC~m~C~FCaTg~~--G~~R-NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v 197 (384)
--||+.+|.||+-... ...| -|+..||++++-.+.+. -++.|+|-|...|....+-.
T Consensus 60 Sn~C~~~C~fC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~--------------------G~~~i~l~~g~~~~~~~~~~ 119 (348)
T 3iix_A 60 SNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQF--------------------GAKTIVLQSGEDPYXMPDVI 119 (348)
T ss_dssp ECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHT--------------------TCSEEEEEESCCGGGTTHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCCEEEEECCCCCCCCHHHH
T ss_conf 5888998914998836999766158999999999999981--------------------99289982588876648999
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9996037684577877536888513874--14788601256517998404551134441233125789999999999986
Q gi|254781120|r 198 KKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 (384)
Q Consensus 198 ~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~ 275 (384)
...++.+.. .+. .|+++ .|.. ..+++|.+----.+.+++.+.+++.++++-| +.+.++.+++++.--
T Consensus 120 ~~~i~~i~~-~~~-----~i~~~-~g~~~~e~l~~L~~aG~~~~~~~~et~~~~~~~~i~~---~~~~~~~~~~i~~~~- 188 (348)
T 3iix_A 120 SDIVKEIKK-MGV-----AVTLS-LGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRP---DTSFENRLNCLLTLK- 188 (348)
T ss_dssp HHHHHHHHT-TSC-----EEEEE-CCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHST---TSCHHHHHHHHHHHH-
T ss_pred HHHHHHCCC-CCE-----EEEEC-CCCCHHHHHHHHHHHCCCEEEECHHHCCHHHEEECCC---CCCCCHHHHHHHHHH-
T ss_conf 999874033-321-----23202-4543089999999828967985634434021220114---777312467766776-
Q ss_pred HCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCC---CCCHHHHHHHHHHH----HHCCC
Q ss_conf 25894599999872699-9888999999998325453-1667512778879886---88989999999999----98798
Q gi|254781120|r 276 LSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL---CSDQKDIVTFSECI----KRSGY 346 (384)
Q Consensus 276 ~~~~rrit~EYvli~gv-NDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~~~~---~~~~~~i~~F~~~L----~~~Gi 346 (384)
.. |-+++. .+|=|. +.+.+|....+.+++.++. .+.+-+|.|+||.++. +++.....+...+. -+.+|
T Consensus 189 ~~-Gi~v~~--~~i~GlpgEt~ed~~~~l~~lr~l~~~~~~~~~f~P~pgTpl~~~~~~~~~~~l~~ia~~Rl~lp~~~i 265 (348)
T 3iix_A 189 EL-GYETGA--GSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNI 265 (348)
T ss_dssp HT-TCEEEE--CBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBC
T ss_pred HC-CCEEEE--EEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 24-972788--899945999999999999999727998898986675199976568995999999999999996898773
Q ss_pred EEEEC
Q ss_conf 78541
Q gi|254781120|r 347 SSPIR 351 (384)
Q Consensus 347 ~~tiR 351 (384)
.++-+
T Consensus 266 ~~~~~ 270 (348)
T 3iix_A 266 PATTA 270 (348)
T ss_dssp BCCHH
T ss_pred EEEEH
T ss_conf 67503
No 8
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=98.68 E-value=5.4e-06 Score=63.85 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=119.0
Q ss_pred CCCEEEEEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 7733898840651004861322441-110278989999999999997222034444343444545861101441014544
Q gi|254781120|r 112 SRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 (384)
Q Consensus 112 ~r~T~CvSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP 190 (384)
+|-.+=|..|=||+-+|+||++... |-.|.-++.+|++++-.+.+. -+..|+|.|..--
T Consensus 2 ~~~~A~i~isrGC~~~CsFC~ip~~rG~~rsr~~e~Ii~Ei~~l~~~--------------------G~kei~l~~~d~~ 61 (304)
T 2qgq_A 2 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKE--------------------GKKEIILVAQDTT 61 (304)
T ss_dssp CCSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHT--------------------TCCEEEEECTTGG
T ss_pred CCCEEEEEECCCCCCCCEECEEEEEECCEEEECHHHHHHHHHHHHHC--------------------CCEEEEEEEECCC
T ss_conf 98619989776989987755562014983771999999999999986--------------------9909999856466
Q ss_pred HH--------HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC---CHHHHHH-HCC--CCCCEEEEEECCCCHHHHHHCC
Q ss_conf 54--------28999999603768457787753688851387---4147886-012--5651799840455113444123
Q gi|254781120|r 191 LC--------NFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARV-GEE--IGVMLAISLHAVSNDLRNILVP 256 (384)
Q Consensus 191 l~--------N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi---~p~I~~l-a~~--~~~~LAiSLha~~~~~R~~lmP 256 (384)
.. ++..++..+... .+..++.++..-. .+.+..+ ++. .-..+.+++-+.+|...+.+
T Consensus 62 ~~~~~~~~~~~~~~L~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~igieSgs~~vLk~m-- 132 (304)
T 2qgq_A 62 SYGIDLYRKQALPDLLRRLNSL-------NGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLM-- 132 (304)
T ss_dssp GTTHHHHSSCCHHHHHHHHHTS-------SSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHT--
T ss_pred CCCCCCCCCHHHHHHHHHHHCC-------CCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH--
T ss_conf 5554244511489999987236-------8835899403584367788777676448464677406432787999875--
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCC
Q ss_conf 31257899999999999862589459999987269998889999999983254-5316675127788798
Q gi|254781120|r 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCE 325 (384)
Q Consensus 257 i~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~ 325 (384)
+|+|+.++..++++..-+.- ..-..--++++.==.++.++..+..++++.+ .-+++.-+|.|.||.+
T Consensus 133 -~r~~t~e~~~~~v~~ir~~~-p~~~i~t~fIvGfPgET~edf~~T~~fl~~~~~d~~~i~~~sp~pGT~ 200 (304)
T 2qgq_A 133 -GRTKSSEELKKMLSSIRERF-PDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTV 200 (304)
T ss_dssp -TCCSCHHHHHHHHHHHHHHC-TTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----
T ss_pred -CCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf -04764555445887676648-995576357567898768999999999985697833002425669976
No 9
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=98.28 E-value=0.00029 Score=50.99 Aligned_cols=201 Identities=11% Similarity=0.144 Sum_probs=112.3
Q ss_pred CCCHHCCCCCCCC---CCHHHC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH--HH
Q ss_conf 6510048613224---411102--7898999999999999722203444434344454586110144101454454--28
Q gi|254781120|r 122 VGCSLTCSFCYTG---TQKLVR--NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC--NF 194 (384)
Q Consensus 122 vGC~m~C~FCaTg---~~G~~R--NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~--N~ 194 (384)
-||+.+|.||+-. +.+..+ =++.+||++++..+... .++.+.+-|-+.|.. .+
T Consensus 74 n~C~~~C~FCafs~~~~~~~~~~~l~s~eeI~e~a~~~~~~--------------------G~~~i~l~~g~~~~~~~~~ 133 (369)
T 1r30_A 74 GACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA--------------------GSTRFCMGAAWKNPHERDM 133 (369)
T ss_dssp SCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT--------------------TCSEEEEEECCSSCCTTTH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCEEEEEEECCCCCCCCHH
T ss_conf 99998892299734189998754668879999999989875--------------------9979999957888870279
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999996037684577877536888513874--14788601256517998404551134441233125789999999999
Q gi|254781120|r 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 195 d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
+-....++.+.. ..+ .|.+|. |.+ ..+++|.+----.+.+.+-+ .++.+.++ + ++++.++-+++++.
T Consensus 134 ~~~~~~i~~i~~---~~~---~i~~~~-~~l~~e~l~~Lk~aG~~~~~~~lEt-~~~~~~~~-~--~~~~~~~rl~~l~~ 202 (369)
T 1r30_A 134 PYLEQMVQGVKA---MGL---EACMTL-GTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNI-I--TTRTYQERLDTLEK 202 (369)
T ss_dssp HHHHHHHHHHHH---TTS---EEEEEC-SSCCHHHHHHHHHHCCCEEECCCBS-CHHHHHHH-C--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---CCC---EEEEEC-CCCCHHHHHHHHHHCCCEECCCHHH-HHHHHCCC-C--CCCCHHHHHHHHHH
T ss_conf 999999998520---475---476512-6798999999985187888343424-55542134-3--45879999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC---EEEEEECCCCCCCCCCC---CCHHHHHHHHHHHH----
Q ss_conf 986258945999998726999888999999998325453---16675127788798868---89899999999999----
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPGCEYLC---SDQKDIVTFSECIK---- 342 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~---~vNLIp~N~~~~~~~~~---~~~~~i~~F~~~L~---- 342 (384)
--+ . |-+++- .+|=|..++.+|..++...++.+.. .|-+.+|+|.++.++.. ++.+...+...+.+
T Consensus 203 a~~-~-Gi~~~~--g~i~G~gEt~ed~i~~l~~Lr~L~~~~~~v~~~~f~P~~gT~l~~~~~~~~~e~lr~iAi~Rl~lP 278 (369)
T 1r30_A 203 VRD-A-GIKVCS--GGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMP 278 (369)
T ss_dssp HHH-H-HCEEEC--CEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHH-H-CCCCEE--EEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 998-2-897358--889788999999999999998668998665550046689997666789999999999999999778
Q ss_pred HCCCEEEE-CCCCCCC
Q ss_conf 87987854-1587771
Q gi|254781120|r 343 RSGYSSPI-RTPRGLD 357 (384)
Q Consensus 343 ~~Gi~~ti-R~srG~D 357 (384)
+..+.++- |.+.|.+
T Consensus 279 ~~~i~i~~~r~~~~~~ 294 (369)
T 1r30_A 279 TSYVRLSAGREQMNEQ 294 (369)
T ss_dssp TSEEEEESSGGGSCHH
T ss_pred CCCEEEEEHHHHCCHH
T ss_conf 8643886115541877
No 10
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=94.24 E-value=0.37 Score=27.99 Aligned_cols=203 Identities=14% Similarity=0.282 Sum_probs=111.3
Q ss_pred CHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHH-HHHHHHHHHHH
Q ss_conf 10048613224411102789899999999999972220344443434445458611014410145445-42899999960
Q gi|254781120|r 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL-CNFDNVKKSLS 202 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl-~N~d~v~~ai~ 202 (384)
|+--|.||.-.+.--.+.-...+.++.+. +.+... +....+++|+.|.| |=|-|- ++-+.+.+-++
T Consensus 62 C~~~C~yC~~~~~~~~~~~~~~~Yl~~L~---~Ei~~~---------a~~~~~~~v~~i~~-GGGTpt~L~~~~l~~l~~ 128 (457)
T 1olt_A 62 CHKLCYFCGCNKIVTRQQHKADQYLDALE---QEIVHR---------APLFAGRHVSQLHW-GGGTPTYLNKAQISRLMK 128 (457)
T ss_dssp ESSCCTTCCSSCEECSCTHHHHHHHHHHH---HHHHHH---------GGGGTTCCEEEEEE-EESCGGGSCHHHHHHHHH
T ss_pred CCCCCCCCCCCEECCCCCCHHHHHHHHHH---HHHHHH---------HHHCCCCCEEEEEE-CCCCCCCCCHHHHHHHHH
T ss_conf 89889999982455888661999999999---999996---------55638997459998-287504489999999999
Q ss_pred CCCCCCCCCCCCC-EEEEEE--CCC-CHHHHHHHCCCCC-CEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3768457787753-688851--387-4147886012565-1799840455113444123312578999999999998625
Q gi|254781120|r 203 IASDSMGLSFSKR-RITLST--SGF-VPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 (384)
Q Consensus 203 ~l~~~~g~~~~~r-~ITvST--~Gi-~p~I~~la~~~~~-~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~ 277 (384)
.+... |.++.. .||+.+ ..+ .+.+..+.+ .+| .+-+-+.+-++++...+ ||.++.+++.+++..-- ..
T Consensus 129 ~l~~~--f~~~~~~e~tiE~~P~~~~~~~l~~l~~-~G~nRiSlGvQsfd~~vlk~i---~R~~~~e~~~~~i~~~r-~~ 201 (457)
T 1olt_A 129 LLREN--FQFNADAEISIEVDPREIELDVLDHLRA-EGFNRLSMGVQDFNKEVQRLV---NREQDEEFIFALLNHAR-EI 201 (457)
T ss_dssp HHHHH--SCEEEEEEEEEEECSSSCCTHHHHHHHH-TTCCEEEEEEECCCHHHHHHH---TCCCCHHHHHHHHHHHH-HT
T ss_pred HHHHH--CCCCCCEEEEEEECCCCCCHHHHHHHHH-CCCCEEEECCCCCCHHHHHHH---HCCCCHHHHHHHHHHHH-HH
T ss_conf 99986--4778770799982599871767999973-799879960786977988562---14673888999999999-84
Q ss_pred CCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCC--------CCCH-HHHHH---HHHHHHH
Q ss_conf 894599999872699-98889999999983254-531667512778879886--------8898-99999---9999998
Q gi|254781120|r 278 NARRITFEYVMLKGI-NDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL--------CSDQ-KDIVT---FSECIKR 343 (384)
Q Consensus 278 ~~rrit~EYvli~gv-NDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~~~--------~~~~-~~i~~---F~~~L~~ 343 (384)
.-..|.+..+ =|+ +.+.+....-++.+-.+ +-+|.+-+|...|+.... -|+. ++.+. -.+.|.+
T Consensus 202 g~~~i~~DLI--~GlPgqt~e~~~~tl~~~~~l~pd~i~~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~a~~~L~~ 279 (457)
T 1olt_A 202 GFTSTNIDLI--YGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQ 279 (457)
T ss_dssp TCCSCEEEEE--ESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HCCEEECCCC--CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0543723315--77998337788889988884089811343110078427766322223542027999999999999997
Q ss_pred CCCEE
Q ss_conf 79878
Q gi|254781120|r 344 SGYSS 348 (384)
Q Consensus 344 ~Gi~~ 348 (384)
+|+.-
T Consensus 280 ~GY~~ 284 (457)
T 1olt_A 280 SGYQF 284 (457)
T ss_dssp TTCEE
T ss_pred CCHHH
T ss_conf 78354
No 11
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1}
Probab=88.25 E-value=1.3 Score=23.94 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=71.9
Q ss_pred CCEEEEEECCCCHHHHHHCCCC----C---CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 5179984045511344412331----2---57899999999999862589459999987269998889999999983254
Q gi|254781120|r 237 VMLAISLHAVSNDLRNILVPIN----R---KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 (384)
Q Consensus 237 ~~LAiSLha~~~~~R~~lmPi~----~---~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~ 309 (384)
.=+.++=.+++|+.+..+|..+ - -+++++..+.+.. ...+.+++ ++.+ ++++|.+|++-.-++
T Consensus 32 ~IiVvdD~~A~D~~~k~~l~mA~P~gvk~~i~sv~~a~~~l~~---~~~~~~vl---il~k----~~~da~~l~~~g~~i 101 (163)
T 3p3v_A 32 TVIVANDAVSEDKIQQSLMKTVIPSSIAIRFFSIQKVIDIIHK---ASPAQSIF---IVVK----DLQDAKLLVEGGVPI 101 (163)
T ss_dssp EEEEECHHHHHCHHHHHHHGGGSCTTSEEEEECHHHHHHHGGG---CCTTCEEE---EEES----SHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHC---CCCCCEEE---EEEC----CHHHHHHHHHCCCCC
T ss_conf 9999765224799999999963888885999759999999856---88777499---9978----999999999759998
Q ss_pred CCEEEEEECCCCCCCCCC----CCCHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 531667512778879886----88989999999999987987854158777
Q gi|254781120|r 310 PAKINLIPFNPWPGCEYL----CSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 310 ~~~vNLIp~N~~~~~~~~----~~~~~~i~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
-.||+=.....+|...- .-+++.+++|.+...+.|+.+.+|..-..
T Consensus 102 -~~vNvG~~~~~~g~~~i~~~v~l~~ee~~~lk~l~~~~Gv~v~~q~vP~d 151 (163)
T 3p3v_A 102 -TEINIGNIHKTDDKVAITQFISLGETDKSAIRCLAHDHHVVFNTKTTPAG 151 (163)
T ss_dssp -CEEEEEEBCCCTTSEESSSSBEECHHHHHHHHHHHHTSCCEEECCCSSSC
T ss_pred -CEEEECCCCCCCCCEEEECCEEECHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf -88998999778997798465422899999999999844988999989699
No 12
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157}
Probab=82.45 E-value=1.7 Score=23.08 Aligned_cols=108 Identities=16% Similarity=0.274 Sum_probs=70.4
Q ss_pred CCCEEEEEECCCCHHHHHHCCC-----CCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 6517998404551134441233-----125---78999999999998625894599999872699988899999999832
Q gi|254781120|r 236 GVMLAISLHAVSNDLRNILVPI-----NRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 (384)
Q Consensus 236 ~~~LAiSLha~~~~~R~~lmPi-----~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~ 307 (384)
..=+.++=.+++|+.|..+|-. +-+ +++++-.+.+.. .....+++ ++. .++++|.+|++-.-
T Consensus 33 ~~IiVvdD~vA~D~~~k~~lkmaapp~gvk~~i~sve~a~~~l~~---~~~~~~v~---vl~----k~p~da~~l~~~g~ 102 (168)
T 3eye_A 33 NLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGK---AAPHQKIF---LIC----RTPQTVRKLVEGGI 102 (168)
T ss_dssp SEEEEECHHHHHSGGGGHHHHHHHHHHTCEEEEECHHHHHHHGGG---CCTTCCEE---EEE----SSHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHC---CCCCCEEE---EEE----CCHHHHHHHHHCCC
T ss_conf 999997720148999999996348987638999879999998736---57786399---998----89999999997599
Q ss_pred CCCCEEEEEECCCCCCCCCCC----CCHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 545316675127788798868----898999999999998798785415877
Q gi|254781120|r 308 GIPAKINLIPFNPWPGCEYLC----SDQKDIVTFSECIKRSGYSSPIRTPRG 355 (384)
Q Consensus 308 ~~~~~vNLIp~N~~~~~~~~~----~~~~~i~~F~~~L~~~Gi~~tiR~srG 355 (384)
++ -.||+=....-+|...-. -+++.+++|. .|.+.|+.+.+|..-.
T Consensus 103 ~i-~~lNvG~~~~~~g~~~i~~~v~l~~ee~~~lk-~l~~~Gv~v~~Q~vP~ 152 (168)
T 3eye_A 103 DL-KDVNVGNMHFSEGKKQISSKVYVDDQDLTDLR-FIKQRGVNVFIQDVPG 152 (168)
T ss_dssp CC-CEEEECCBCCCTTCEEEETTEEECHHHHHHHH-HHHHTTCEEEECSSTT
T ss_pred CC-CEEEECCCCCCCCCEEECCCEEECHHHHHHHH-HHHHCCCEEEEEECCC
T ss_conf 98-87998998478997797163611999999999-9997798799998939
No 13
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha- beta crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=76.78 E-value=4.1 Score=20.27 Aligned_cols=107 Identities=20% Similarity=0.325 Sum_probs=69.3
Q ss_pred EEEEEECCCCHHHHHHC----CCCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 79984045511344412----33125---789999999999986258945999998726999888999999998325453
Q gi|254781120|r 239 LAISLHAVSNDLRNILV----PINRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 (384)
Q Consensus 239 LAiSLha~~~~~R~~lm----Pi~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~ 311 (384)
+.+.=-+++|+.+..+| |-+-+ +++++..+.+... ... +.++++ +. .++++|.+|++---++ .
T Consensus 31 iVvdD~~A~D~~~k~~lkmA~P~gvk~~i~sve~a~~~~~~~-~~~-~~~v~i---l~----k~~~d~~~l~~~g~~i-~ 100 (164)
T 1nrz_A 31 IICNDDVFNDEVRRTLLRQAAPPGMKVNVVSLEKAVAVYHNP-QYQ-DETVFY---LF----TNPHDVLTMVRQGVQI-A 100 (164)
T ss_dssp EEECHHHHTCHHHHHHHHHTCCTTCEEEEECHHHHHHHHTCG-GGT-TCEEEE---EE----SSHHHHHHHHTTTCCC-S
T ss_pred EEECCHHCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCC-CCC-CCEEEE---EE----CCHHHHHHHHHCCCCC-C
T ss_conf 997712317999999999617999879997399999998576-657-966999---98----9999999999739998-8
Q ss_pred EEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 166751277887988----688989999999999987987854158777
Q gi|254781120|r 312 KINLIPFNPWPGCEY----LCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 312 ~vNLIp~N~~~~~~~----~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
.||+=.....+|... -.-+++.+++|.+ |.+.|+.+.+|..-..
T Consensus 101 ~vNvG~~~~~~g~~~i~~~v~l~~ee~~~l~~-l~~~Gv~v~~q~vP~d 148 (164)
T 1nrz_A 101 TLNIGGMAWRPGKKQLTKAVSLDPQDIQAFRE-LDKLGVKLDLRVVASD 148 (164)
T ss_dssp EEEEEEBCCCTTCEEEETTEEECHHHHHHHHH-HHHTTCEEEECSSTTS
T ss_pred EEEECCCCCCCCCEEEECCEEECHHHHHHHHH-HHHCCCEEEEEECCCC
T ss_conf 89989987889977970645128999999999-9977987999989499
No 14
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=73.99 E-value=4.8 Score=19.77 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCEEEEEECCCCHHHHHHC----CCCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 5179984045511344412----33125---7899999999999862589459999987269998889999999983254
Q gi|254781120|r 237 VMLAISLHAVSNDLRNILV----PINRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 (384)
Q Consensus 237 ~~LAiSLha~~~~~R~~lm----Pi~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~ 309 (384)
.=+.++=..++|+.+..+| |-+-+ +++++..+.+... ... +.+++ ++.+ ++++|.+|++---++
T Consensus 32 ~IiVvdD~va~D~~~k~~lkmA~P~gvk~~i~sv~~a~~~l~~~-~~~-~~~vl---vl~~----~~~d~~~l~~~g~~i 102 (165)
T 1vsq_C 32 RIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNNP-KYA-GERVM---LLFT----NPTDVERLVEGGVKI 102 (165)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTCCTTCEEEEECHHHHHHHHTCG-GGT-TCEEE---EEES----SHHHHHHHHHTTCCC
T ss_pred EEEEECCHHCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCC-CCC-CCEEE---EEEC----CHHHHHHHHHCCCCC
T ss_conf 99997713507999999999637898569997199999998575-668-87499---9988----999999999749998
Q ss_pred CCEEEEEECCCCCCCCCCC----CCHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 5316675127788798868----8989999999999987987854158777
Q gi|254781120|r 310 PAKINLIPFNPWPGCEYLC----SDQKDIVTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 310 ~~~vNLIp~N~~~~~~~~~----~~~~~i~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
-.||+=.....+|...-. -+++.+++|.+ |.+.|+.+.+|..-..
T Consensus 103 -~~vNiG~~~~~~g~~~v~~~v~l~~ee~~~lk~-l~~~Gv~v~~Q~vP~d 151 (165)
T 1vsq_C 103 -TSVNVGGMAFRQGKTQVNNAVSVDEKDIEAFKK-LNARGIELEVRKVSTD 151 (165)
T ss_dssp -SEEEEEECCCCTTSEECSSSCEECHHHHHHHHH-HHHTTCEEEECSSTTS
T ss_pred -CEEEECCCCCCCCCEEECCCEEECHHHHHHHHH-HHHCCCEEEEEECCCC
T ss_conf -889989986788967980516308999999999-9977987999989599
No 15
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, JCSG, PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=71.88 E-value=2.5 Score=21.89 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8899999999832545316675
Q gi|254781120|r 295 SPRDALNLIKILKGIPAKINLI 316 (384)
Q Consensus 295 s~e~a~~L~~ll~~~~~~vNLI 316 (384)
..+....+.+.++.+..+|-.|
T Consensus 272 ~~~~~~~~~~~l~~~g~~vi~i 293 (342)
T 1j5x_A 272 MDEQEKRLRKELESLGATVLEV 293 (342)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7999999999999829979998
No 16
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=70.91 E-value=5.6 Score=19.28 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=72.6
Q ss_pred CCCEEEEEECCCCHHHHHHC----CCCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 65179984045511344412----33125---789999999999986258945999998726999888999999998325
Q gi|254781120|r 236 GVMLAISLHAVSNDLRNILV----PINRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 (384)
Q Consensus 236 ~~~LAiSLha~~~~~R~~lm----Pi~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~ 308 (384)
..=+.++=.+++|+.+..+| |-+-+ +++++..+.+... +.. +.++++ +. .++++|.+|++---+
T Consensus 29 ~~IiVvdD~~A~D~~~k~~l~ma~P~gvk~~i~sv~~a~~~l~~~-~~~-~~~v~v---l~----~~~~d~~~l~~~g~~ 99 (163)
T 1ble_A 29 DRIIVVSDDIAQDEMRKTLILSVAPSNVKASAVSVSKMAKAFHSP-RYE-GVTAML---LF----ENPSDIVSLIEAGVP 99 (163)
T ss_dssp SEEEEECHHHHHCHHHHHHHHTSSCTTSEEEEECHHHHHHHHHCS-TTT-TCEEEE---EE----SSSHHHHHHHTTTCC
T ss_pred CEEEEECCHHHCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCC-CCC-CCEEEE---EE----CCHHHHHHHHHCCCC
T ss_conf 999997423507999999999638999779999999999998575-556-976999---98----999999999975999
Q ss_pred CCCEEEEEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 45316675127788798----8688989999999999987987854158777
Q gi|254781120|r 309 IPAKINLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 309 ~~~~vNLIp~N~~~~~~----~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
+ -.||+=..+..+|.. .-.-+++.++.|. .|.+.|+.+.+|..-..
T Consensus 100 i-~~vNvG~m~~~~g~~~i~~~v~l~~ee~~~l~-~l~~~Gv~v~~q~vP~d 149 (163)
T 1ble_A 100 I-KTVNVGGMRFENHRRQITKSVSVTEQDIKAFE-TLSDKGVKLELRQLPSD 149 (163)
T ss_dssp C-CEEEEEEBCCCTTSEECSSSBEECHHHHHHHH-HHHHTTCEEEECSSTTS
T ss_pred C-CEEEEECCCCCCCCEEEECCEEECHHHHHHHH-HHHHCCCEEEEEECCCC
T ss_conf 8-77999376158997798264502899999999-99976987999989499
No 17
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=63.75 E-value=4.4 Score=20.02 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCCCCHH--------------------HHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 9999999862589459999987269998889--------------------99999998325453166751277887988
Q gi|254781120|r 267 IDACRHYPGLSNARRITFEYVMLKGINDSPR--------------------DALNLIKILKGIPAKINLIPFNPWPGCEY 326 (384)
Q Consensus 267 ~~a~~~y~~~~~~rrit~EYvli~gvNDs~e--------------------~a~~L~~ll~~~~~~vNLIp~N~~~~~~~ 326 (384)
.+..++|..... .--|||+||+|-|.+=+ |..+|++..+...+.|-| -+|.. + .+
T Consensus 370 t~~~k~yIDfAA--~~G~eYvLvDgW~~gW~~~~~~~~~~~~d~~~~~p~~dl~elv~Ya~~KgV~i~l-w~~s~-~-~~ 444 (738)
T 2d73_A 370 TANVKRYIDFAA--AHGFDAVLVEGWNEGWEDWFGNSKDYVFDFVTPYPDFDVKEIHRYAARKGIKMMM-HHETS-A-SV 444 (738)
T ss_dssp HHHHHHHHHHHH--HTTCSEEEECSCBTTGGGCSSSCCSSCCCSSCBCTTCCHHHHHHHHHHTTCEEEE-EEECT-T-BH
T ss_pred HHHHHHHHHHHH--HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE-EECCC-C-CH
T ss_conf 789999999999--8399889994021466666678866545443046877989999999967977999-96677-5-13
Q ss_pred CCCCHHHHHHHHHHHHHCCCE
Q ss_conf 688989999999999987987
Q gi|254781120|r 327 LCSDQKDIVTFSECIKRSGYS 347 (384)
Q Consensus 327 ~~~~~~~i~~F~~~L~~~Gi~ 347 (384)
....+.++++.+.+.+.||.
T Consensus 445 -~~~~~~~d~~f~~~~~~GV~ 464 (738)
T 2d73_A 445 -RNYERHMDKAYQFMADNGYN 464 (738)
T ss_dssp -HHHHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHHHHHHHHHHH
T ss_conf -34899999999999885156
No 18
>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=57.76 E-value=9.6 Score=17.56 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 6889899999999999879878541
Q gi|254781120|r 327 LCSDQKDIVTFSECIKRSGYSSPIR 351 (384)
Q Consensus 327 ~~~~~~~i~~F~~~L~~~Gi~~tiR 351 (384)
..++.+.+.+|.+.+...+-++.|-
T Consensus 84 ~~~~~~~i~~~~~~l~~~~~pVlvH 108 (156)
T 2f46_A 84 RDIQKHDVETFRQLIGQAEYPVLAY 108 (156)
T ss_dssp TTCCHHHHHHHHHHHHTSCSSEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 7664899999999984368978988
No 19
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=52.78 E-value=9.4 Score=17.63 Aligned_cols=107 Identities=10% Similarity=0.041 Sum_probs=46.5
Q ss_pred EEEECCCCHHHH---------HHHHHHHHHCCCCCCCCCCCCCEEEEEECCC---CHHHHH-----HHCCCCCCEEEEEE
Q ss_conf 441014544542---------8999999603768457787753688851387---414788-----60125651799840
Q gi|254781120|r 182 IVMMGMGEPLCN---------FDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIAR-----VGEEIGVMLAISLH 244 (384)
Q Consensus 182 iVfMGmGEPl~N---------~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi---~p~I~~-----la~~~~~~LAiSLh 244 (384)
|.|==+=||..+ |..++++|+-.. + .+-|.|.+.+- ...+.. +..+..-++.+|.|
T Consensus 140 v~~ei~NEP~~~~~~~~w~~~~~~~i~~IR~~d-~------~~~I~v~~~~w~~~~~~~~~~~~~~~~~d~~~nivys~H 212 (345)
T 3jug_A 140 VIINIANEWYGSWDGAAWADGYIDVIPKLRDAG-L------THTLMVDAAGWGQYPQSIHDYGQDVFNADPLKNTIFSIH 212 (345)
T ss_dssp EEEECCTTCCCSSCHHHHHHHHHHHHHHHHHTT-C------CSCEEEECBTTTTBTHHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-C------CCEEEECCCCCCCCCHHHHHCCHHCCCCCCCCCEEEEEE
T ss_conf 999710433578898999988889999999639-9------718998278523470344424011157785456699987
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4551134441233125789999999999986258945-9999987269998889999999983254
Q gi|254781120|r 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKILKGI 309 (384)
Q Consensus 245 a~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rr-it~EYvli~gvNDs~e~a~~L~~ll~~~ 309 (384)
-=... ..+-+.+.+.++.+.. . +.. +.=||-.-.. |...+...+.+++...
T Consensus 213 ~Y~~~----------~~~~~~~~~~i~~~~~-~-g~PvivgEfG~~~~--~~~~~~~~~~~~~~~~ 264 (345)
T 3jug_A 213 MYEYA----------GGDANTVRSNIDRVID-Q-DLALVIGEFGHRHT--DGDVDEDTILSYSEET 264 (345)
T ss_dssp ESTTT----------TSSHHHHHHHHHHHHT-T-TCCEEEEEECCCCC--C--CCHHHHHHHHHHH
T ss_pred EECCC----------CCCHHHHHHHHHHHHH-C-CCCEEEEECCCCCC--CCCHHHHHHHHHHHHC
T ss_conf 72787----------7987899999999998-7-99799983667788--8858999999999981
No 20
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=51.62 E-value=12 Score=16.88 Aligned_cols=40 Identities=8% Similarity=-0.102 Sum_probs=18.9
Q ss_pred CCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEE
Q ss_conf 56517998404551134441233125789999999999986258945-99999
Q gi|254781120|r 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEY 286 (384)
Q Consensus 235 ~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rr-it~EY 286 (384)
...++.+|.|.=... -.+...+.+.++.+.. . ++. +.=||
T Consensus 180 ~~~~~v~~~H~Y~~~----------~~~~~~~~~~~~~~~~-~-~~PvvvgEf 220 (294)
T 2whl_A 180 PLKNTMFSIHMYEYA----------GGDANTVRSNIDRVID-Q-DLALVIGEF 220 (294)
T ss_dssp TTCCEEEEEEESTTT----------TSSHHHHHHHHHHHHT-T-TCCEEEEEE
T ss_pred CCCCEEECCCCCCCC----------CCCHHHHHHHHHHHHH-C-CCCEEEECC
T ss_conf 422457504647777----------7858999999999986-7-993999877
No 21
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1
Probab=51.56 E-value=11 Score=17.11 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 889999999983254531667512778
Q gi|254781120|r 295 SPRDALNLIKILKGIPAKINLIPFNPW 321 (384)
Q Consensus 295 s~e~a~~L~~ll~~~~~~vNLIp~N~~ 321 (384)
+..-+.++.+++-.-++.+-++|..+.
T Consensus 434 ~~~~~~~lir~~~~S~s~l~i~~lqDl 460 (505)
T 1tz7_A 434 EEKVNEELIRLVLISRAKFAIIQMQDL 460 (505)
T ss_dssp GGGHHHHHHHHHHHSCCSEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHCCHHHHHEEHHHH
T ss_conf 327999999999828284601309997
No 22
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=45.75 E-value=14 Score=16.25 Aligned_cols=88 Identities=9% Similarity=0.047 Sum_probs=40.2
Q ss_pred EEEEECCCCHHHH---------HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH---HHHH-----HHCCCCCCEEEEE
Q ss_conf 1441014544542---------899999960376845778775368885138741---4788-----6012565179984
Q gi|254781120|r 181 NIVMMGMGEPLCN---------FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP---NIAR-----VGEEIGVMLAISL 243 (384)
Q Consensus 181 NiVfMGmGEPl~N---------~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p---~I~~-----la~~~~~~LAiSL 243 (384)
+|.|==+=||..+ |..++++||-.. ++ +-|.|...+-.. .+.. +..+..-++.+|.
T Consensus 124 ~v~~el~NEP~~~~~~~~w~~~~~~~i~~iR~~~-~~------~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~vys~ 196 (464)
T 1wky_A 124 TVIINIANEWFGSWDGAAWADGYKQAIPRLRNAG-LN------NTLMIDAAGWGQFPQSIHDYGREVFNADPQRNTMFSI 196 (464)
T ss_dssp TEEEECCTTCCCSSCHHHHHHHHHHHHHHHHHTT-CC------SCEEEECBTTTTBTHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CC------CEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCEEEEE
T ss_conf 8999835687778665778999999999999739-99------7899906763456324554400136888656779999
Q ss_pred ECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEEE
Q ss_conf 04551134441233125789999999999986258945-999998
Q gi|254781120|r 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYV 287 (384)
Q Consensus 244 ha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rr-it~EYv 287 (384)
|.=.. . ...-..+.+.++.+.. . +.. +.=||-
T Consensus 197 H~Y~~---------~-~~~~~~~~~~~~~~~~-~-g~PvivgEfG 229 (464)
T 1wky_A 197 HMYEY---------A-GGNASQVRTNIDRVLN-Q-DLALVIGEFG 229 (464)
T ss_dssp EESTT---------T-SSSHHHHHHHHHHHHT-T-TCCEEEEEEC
T ss_pred EEECC---------C-CCCHHHHHHHHHHHHH-C-CCCEEEEEEC
T ss_conf 87746---------6-7987899999999998-8-9979999605
No 23
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=45.50 E-value=15 Score=16.22 Aligned_cols=11 Identities=27% Similarity=0.284 Sum_probs=6.3
Q ss_pred ECCCCCCCEEE
Q ss_conf 31454430377
Q gi|254781120|r 80 ISCDGTRKWLL 90 (384)
Q Consensus 80 ~S~DGT~K~L~ 90 (384)
..-|||.-.++
T Consensus 87 ~GGDGTv~ev~ 97 (337)
T 2qv7_A 87 AGGDGTLNEVV 97 (337)
T ss_dssp EECHHHHHHHH
T ss_pred ECCCHHHHHHH
T ss_conf 90656999999
No 24
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=44.75 E-value=15 Score=16.14 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=49.1
Q ss_pred HCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHCC-CEEEECC
Q ss_conf 258945999998726999888999999998325453166751277887988-6889899999999999879-8785415
Q gi|254781120|r 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSG-YSSPIRT 352 (384)
Q Consensus 276 ~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~-~~~~~~~i~~F~~~L~~~G-i~~tiR~ 352 (384)
.+....|.-|.+|+| |+-..+.-.++.+++..+.++| +...+-. .-+ -.-+.+++++|.+.|...| |.-.+|.
T Consensus 77 ~~~~~~v~rEl~LiK-v~~~~~~~~ei~~~~~~f~akI--vd~~~~~-~iiE~tG~~~kId~~i~~L~~~g~I~Ei~RT 151 (164)
T 2f1f_A 77 LGQGAHVEREIMLVK-IQASGYGRDEVKRNTEIFRGQI--IDVTPSL-YTVQLAGTSGKLDAFLASIRDVAKIVEVARS 151 (164)
T ss_dssp GGGSCEEEEEEEEEE-EECCTHHHHHHHHHHHHTTCEE--EEECSSE-EEEEEEECHHHHHHHHHHHTTTSEEEEEEEC
T ss_pred CCCCCEEEEEEEEEE-EECCHHHHHHHHHHHHHHCCEE--EECCCCE-EEEEEECCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 899866888999999-9627033788999999829799--9816998-9999958989999999986242978999757
No 25
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase family, acarbose; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A*
Probab=44.44 E-value=15 Score=16.11 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 88999999998325453166751277
Q gi|254781120|r 295 SPRDALNLIKILKGIPAKINLIPFNP 320 (384)
Q Consensus 295 s~e~a~~L~~ll~~~~~~vNLIp~N~ 320 (384)
..+-+.++.+++-.-++.+-++|..+
T Consensus 428 ~~~~~~~~~~~~~~s~s~l~i~~lqD 453 (500)
T 1esw_A 428 EEEVPWALMHLGMKSVARLAVYPVQD 453 (500)
T ss_dssp GGGHHHHHHHHHHHSSCSEEEEEHHH
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 02799999999980819787713998
No 26
>1uzx_A VPS23, STP22, vacuolar protein sorting-associated protein VPS23; transport protein, transport protein/complex, UEV, E2 variant, ubquitin, ESCRT-I; HET: MES; 1.85A {Saccharomyces cerevisiae} SCOP: d.20.1.2
Probab=41.66 E-value=15 Score=16.03 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=28.6
Q ss_pred HHHHHHHHCC---CCCHHHHCCCCHHHHHHHHHCCCCCCCCEE-EEEECCCCCCCEEEECC
Q ss_conf 9999998717---999678334788999998620225787023-46531454430377524
Q gi|254781120|r 37 QIWKWIYVRG---IRDFQGMSDISQEVRHLLNQHFSIIYPEIV-DEKISCDGTRKWLLRFP 93 (384)
Q Consensus 37 QI~~wiy~k~---v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv-~~~~S~DGT~K~L~~l~ 93 (384)
++.+|+|+-- ..+.+.. -.+....|. .| ..+++. +..++.||+.+.|+.|.
T Consensus 20 ~~~~wL~~vlq~~Y~~~~~v---~~dv~~~l~-~y--~~L~p~~~~yt~~dG~~~~Ll~L~ 74 (169)
T 1uzx_A 20 AVVNWLFKVIQPIYNDGRTT---FHDSLALLD-NF--HSLRPRTRVFTHSDGTPQLLLSIY 74 (169)
T ss_dssp HHHHHHHHHHHHHCTTHHHH---HHHHHHHHH-HC--TTEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCCHHHH---HHHHHHHHH-HC--CCCCEEEEEEECCCCCHHEEEEEE
T ss_conf 99999998636216787699---999999998-78--999613435772899831378886
No 27
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=39.31 E-value=18 Score=15.59 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHCCCCC-------CCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 735899899999999869985-------4577558999999987179996
Q gi|254781120|r 8 SLIGMMREELEEALLKIGIPQ-------RHVRMRTSQIWKWIYVRGIRDF 50 (384)
Q Consensus 8 ~L~~ls~~EL~~~l~~~G~p~-------~~~~fRa~QI~~wiy~k~v~~f 50 (384)
.++|-|...+..|.. .|+|- .+..|...++.+|+ ..+..+.
T Consensus 10 ~~fgVS~~TI~~W~~-~GmPvi~~Gg~G~~~~fd~~~v~~Wl-~~Re~~~ 57 (68)
T 1j9i_A 10 DIFGASIRTIQNWQE-QGMPVLRGGGKGNEVLYDSAAVIKWY-AERDAEI 57 (68)
T ss_dssp HHTTCCHHHHHHHTT-TTCCCSSCCCSSSCCEEEHHHHHHHH-TTTGGGG
T ss_pred HHHCCCHHHHHHHHH-CCCCEEECCCCCCCEEECHHHHHHHH-HHHHHHH
T ss_conf 997988899999998-79997755899853246699999999-9998789
No 28
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile 630}
Probab=37.13 E-value=16 Score=15.87 Aligned_cols=15 Identities=0% Similarity=-0.086 Sum_probs=6.8
Q ss_pred CCCEEEEEECCCCHH
Q ss_conf 773389884065100
Q gi|254781120|r 112 SRGTLCVSSQVGCSL 126 (384)
Q Consensus 112 ~r~T~CvSSQvGC~m 126 (384)
+-.|++|..-.|+++
T Consensus 109 ga~~iaiT~~~~S~l 123 (352)
T 3g68_A 109 GCKIASMAGCKNALI 123 (352)
T ss_dssp TCEEEEEESSTTCGG
T ss_pred CCEEECCCCCCCCCC
T ss_conf 971652447777821
No 29
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytoplasmid or periplasmic), drug target functions, structural genomics; 1.40A {Yersinia pestis} PDB: 1igw_A
Probab=35.95 E-value=20 Score=15.19 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=95.9
Q ss_pred EECCCCHHHHHHHHHHHHHCC----------CCCCCCCCCCCEEEEEECCCCHHHHH--HHC-CCCCCEEEEEECCCCHH
Q ss_conf 101454454289999996037----------68457787753688851387414788--601-25651799840455113
Q gi|254781120|r 184 MMGMGEPLCNFDNVKKSLSIA----------SDSMGLSFSKRRITLSTSGFVPNIAR--VGE-EIGVMLAISLHAVSNDL 250 (384)
Q Consensus 184 fMGmGEPl~N~d~v~~ai~~l----------~~~~g~~~~~r~ITvST~Gi~p~I~~--la~-~~~~~LAiSLha~~~~~ 250 (384)
=+|-|.|+.=+.-|...++.= ...+-.+--.-+..|||.-.+.+|+. ++. ...+.+ =+=|=+|..
T Consensus 160 DtGfGg~~nv~r~vk~~i~aGaAgiHiEDQ~~~~KkCGH~~GK~lVp~~E~i~kl~AAr~a~d~~~~~~--vIiARTDA~ 237 (435)
T 3lg3_A 160 EAGFGGVLNAFELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPT--LLIARTDAD 237 (435)
T ss_dssp TTCSSSHHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCC--EEEEEECTT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCE--EEEEEECHH
T ss_conf 788984799999999999769809997156641244667788763279999999999997465179986--999830446
Q ss_pred HHHHCC------------CC--------CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 444123------------31--------2578999999999998625894599999872699988899999999832545
Q gi|254781120|r 251 RNILVP------------IN--------RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 (384)
Q Consensus 251 R~~lmP------------i~--------~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~ 310 (384)
-..++- .. -+-.++..++-+..|.. - ..-|++| ----..++++++++-++. +
T Consensus 238 aa~li~s~~d~~D~~fi~~~Rt~eG~yr~~~G~~~aI~Ra~ay~~-~-ADliw~E-----t~~p~~e~~~~fa~~v~~-~ 309 (435)
T 3lg3_A 238 AADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-Y-ADLVWCE-----TSTPDLALAKRFADAVHA-Q 309 (435)
T ss_dssp TCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-G-CSEEEEC-----CSSCCHHHHHHHHHHHHH-H
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH-H-CCEEEEC-----CCCCCHHHHHHHHHHHCC-C
T ss_conf 542122555213401027876867615426874899999997133-2-4788632-----789989999999876389-6
Q ss_pred CEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 316675127788798868-8989999999999987987854
Q gi|254781120|r 311 AKINLIPFNPWPGCEYLC-SDQKDIVTFSECIKRSGYSSPI 350 (384)
Q Consensus 311 ~~vNLIp~N~~~~~~~~~-~~~~~i~~F~~~L~~~Gi~~ti 350 (384)
+--|++.||-.|..+|+. =+++.+..|++-|.+.|+..-+
T Consensus 310 ~p~~~l~yn~SPsfnw~~~~~~~~i~~f~~eL~~~G~~~q~ 350 (435)
T 3lg3_A 310 FPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAMGYKYQF 350 (435)
T ss_dssp STTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHTTEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 57876145899998822124666777899999972951898
No 30
>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=35.54 E-value=20 Score=15.15 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=5.9
Q ss_pred CEEEEEECCCCHH
Q ss_conf 3389884065100
Q gi|254781120|r 114 GTLCVSSQVGCSL 126 (384)
Q Consensus 114 ~T~CvSSQvGC~m 126 (384)
.|+.|+.-.+.++
T Consensus 126 ~~i~itn~~~S~l 138 (367)
T 2poc_A 126 LTVGIVNSVGSSM 138 (367)
T ss_dssp EEEEEESSTTSHH
T ss_pred EEEEEECCCCCHH
T ss_conf 6999967888566
No 31
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=35.32 E-value=10 Score=17.32 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC---CCHHHHCCCCHHHHH-HHHHCCCCCCCCEE
Q ss_conf 98665857358998999999998699854577558999999987179---996783347889999-98620225787023
Q gi|254781120|r 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI---RDFQGMSDISQEVRH-LLNQHFSIIYPEIV 76 (384)
Q Consensus 1 M~~~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v---~~f~~MtnLpk~lR~-~L~e~~~i~~l~iv 76 (384)
|...-...+-.++.++..++++.+|.|. |- +|+.++.+.+. .++.+..++|.+... +|+. .. -.++
T Consensus 1 Mt~~~~~~~~~~~~e~~a~i~kaL~~p~-----Rl-~Il~~L~~~~~~~v~el~~~l~~s~stvS~HL~~-L~---aglV 70 (99)
T 2zkz_A 1 MTVFVDHKIEYMSLEDDAELLKTMAHPM-----RL-KIVNELYKHKALNVTQIIQILKLPQSTVSQHLCK-MR---GKVL 70 (99)
T ss_dssp ----------CCCHHHHHHHHHHHCSHH-----HH-HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHH-HB---TTTB
T ss_pred CCCHHHCCCCCCCHHHHHHHHHHHCCHH-----HH-HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH-HH---HCCC
T ss_conf 9505523215005999999999948999-----99-9999997789927999899888497699999999-99---2987
Q ss_pred EEEECCCCCCCE
Q ss_conf 465314544303
Q gi|254781120|r 77 DEKISCDGTRKW 88 (384)
Q Consensus 77 ~~~~S~DGT~K~ 88 (384)
... .+|...|
T Consensus 71 ~~~--r~G~~~~ 80 (99)
T 2zkz_A 71 KRN--RQGLEIY 80 (99)
T ss_dssp EEE--EETTEEE
T ss_pred EEE--EECCEEE
T ss_conf 389--8758899
No 32
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A*
Probab=34.60 E-value=21 Score=15.04 Aligned_cols=147 Identities=13% Similarity=0.084 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCEEEEECCCCHH---------HHHHHHHHHHHCCCCCCC
Q ss_conf 78989999999999997222034444343--4445458611014410145445---------428999999603768457
Q gi|254781120|r 141 NLTAEEILLQVLLARSLLGDFPGCEDIEG--MVIPSVGRKISNIVMMGMGEPL---------CNFDNVKKSLSIASDSMG 209 (384)
Q Consensus 141 NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~--~~~~~~~~~i~NiVfMGmGEPl---------~N~d~v~~ai~~l~~~~g 209 (384)
+|+. +|+-.+++.....+....... .-.+..+.+-.-||-.||-|-+ .||+.+++.+..+..|.|
T Consensus 102 tlS~----~Q~~~a~~~~~~~gl~~~v~~~~~d~~~~~~~fD~ivSie~~EHv~~~~~~~~~~~~~~~f~~i~~~LkPgG 177 (302)
T 3hem_A 102 TLSE----NQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDG 177 (302)
T ss_dssp ECCH----HHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTC
T ss_pred ECCH----HHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 3778----899999999987400212334440432347886755311568873122101268899999999998569987
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 78775368885138741478860125651799840455113444123312578999999999998625894599999872
Q gi|254781120|r 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 (384)
Q Consensus 210 ~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli 289 (384)
. .-+.|........ .++.......+.....+=++..|.|-..--++.++..++.+ + +-.| .-.
T Consensus 178 ~------~~l~~i~~~~~~~--~~~~~~~~~~~~~~~~~fi~kyiFpgg~lps~~~~~~~~~~----~-gf~v----~~~ 240 (302)
T 3hem_A 178 R------MLLHTITIPDKEE--AQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSN----A-GWKV----ERY 240 (302)
T ss_dssp E------EEEEEEECCCHHH--HHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHH----H-TCEE----EEE
T ss_pred E------EEEEEEECCCCHH--HHHCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHCC----C-CEEE----EEE
T ss_conf 4------9999994578212--11036788677533321565203686678978999865223----8-6699----999
Q ss_pred CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 699988899999999832545
Q gi|254781120|r 290 KGINDSPRDALNLIKILKGIP 310 (384)
Q Consensus 290 ~gvNDs~e~a~~L~~ll~~~~ 310 (384)
.|.+...++-|-.+.+.+.
T Consensus 241 --~~~g~hY~~Tl~~W~~~~~ 259 (302)
T 3hem_A 241 --HRIGANYVPTLNAWADALQ 259 (302)
T ss_dssp --EECGGGHHHHHHHHHHHHH
T ss_pred --EECCHHHHHHHHHHHHHHH
T ss_conf --9553519999999999999
No 33
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: d.58.18.6 d.58.18.6
Probab=34.57 E-value=11 Score=17.00 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 9999983254531667512778879886-8898999999999998798785415
Q gi|254781120|r 300 LNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 300 ~~L~~ll~~~~~~vNLIp~N~~~~~~~~-~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
.++.+++..+.++|- ..++- ..-++ .-+.+++++|.+.|+..||.=.+|.
T Consensus 127 ~eI~~i~~~f~akIv--dv~~~-s~iiE~TG~~~kId~fi~~L~~~gIlEi~RT 177 (193)
T 2fgc_A 127 QEIFQLVEIFRGKII--DVSRE-GAIIEITGARSKVEAFINLLPQKQVEEIART 177 (193)
T ss_dssp HHHHHHHHHTTCEEE--EECSS-EEEEEEEECHHHHHHHHHHSCGGGEEEEEEC
T ss_pred HHHHHHHHHCCCEEE--ECCCC-EEEEEEECCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 999999997198899--73599-8999996799999999997463487899804
No 34
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAMP, CGMP, sphcn1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=33.33 E-value=22 Score=14.90 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHH-HHCCCCHHHHHHHHHCCC
Q ss_conf 989999999986998545775589999999871799967-833478899999862022
Q gi|254781120|r 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQ-GMSDISQEVRHLLNQHFS 69 (384)
Q Consensus 13 s~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~-~MtnLpk~lR~~L~e~~~ 69 (384)
...++++|+...+.|. +-+-|..+-+++.|++...+.+ -+.+||..++..+..+..
T Consensus 13 ~~~~l~~~m~~~~ip~-~l~~ri~~y~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~ 69 (198)
T 2ptm_A 13 KLKQVEEYMQYRKLPS-HLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNC 69 (198)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999999999839999-99999999999987504533999999769999999999999
No 35
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 2q0a_A* 3etq_A*
Probab=32.98 E-value=22 Score=14.86 Aligned_cols=56 Identities=9% Similarity=0.156 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC-CHHHHCCCCHHHHHHHHHCCC
Q ss_conf 989999999986998545775589999999871799-967833478899999862022
Q gi|254781120|r 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR-DFQGMSDISQEVRHLLNQHFS 69 (384)
Q Consensus 13 s~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~-~f~~MtnLpk~lR~~L~e~~~ 69 (384)
...++++|+...+.|. +-+-|..+-+++.|.+... ..+-+..||..+|..+..+..
T Consensus 14 ~~~~l~~~~~~~~ip~-~L~~ri~~~~~~~~~~~~~~~~~~l~~Lp~~L~~~i~~~~~ 70 (202)
T 3bpz_A 14 KYKQVEQYMSFHKLPA-DFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNC 70 (202)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999999999849999-99999999999998706763889998769999999999999
No 36
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=32.35 E-value=23 Score=14.79 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=5.3
Q ss_pred CHHHHHHHHHHH
Q ss_conf 899999999999
Q gi|254781120|r 262 PLEMLIDACRHY 273 (384)
Q Consensus 262 ~l~~l~~a~~~y 273 (384)
++++.+.++++.
T Consensus 142 s~~~~~~a~eki 153 (262)
T 1zco_A 142 TIQELLYSAEYI 153 (262)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 778999999999
No 37
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=32.00 E-value=23 Score=14.75 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=34.0
Q ss_pred CCHH-HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHH
Q ss_conf 5445-428999999603768457787753688851387414788601256517998404551134441233125789999
Q gi|254781120|r 188 GEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 (384)
Q Consensus 188 GEPl-~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l 266 (384)
+++. ..+.+++.+++-+- + -+||-.+-.-...-..+...+.+ +.+|..-|.. ...+.
T Consensus 178 ~~~~~~~w~~li~~vR~v~-~-------g~lty~a~~~~~~~~~~w~~lD~-Igi~~Y~p~~-------------~~~~~ 235 (343)
T 3civ_A 178 AEPHEAMWRETIARVRTEY-D-------GLVTYNCNHGREEHVRFWDAVDL-ISSSAYYPID-------------RWRDR 235 (343)
T ss_dssp TTTCHHHHHHHHHHHHHHC-C-------SEEEEEEETTCTTTCSCGGGSSE-EEEECCCCGG-------------GHHHH
T ss_pred CCCHHHHHHHHHHHHHHHC-C-------CCEEEECCCCHHHCCCCHHHCCE-EEECCCCCCC-------------CCHHH
T ss_conf 6346889999999999767-9-------93599626414312343211798-8864466622-------------20135
Q ss_pred HHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 9999999862589459999987
Q gi|254781120|r 267 IDACRHYPGLSNARRITFEYVM 288 (384)
Q Consensus 267 ~~a~~~y~~~~~~rrit~EYvl 288 (384)
++.++.+....++--+.-||-.
T Consensus 236 ~~~l~~~~~~~~KPi~~~E~G~ 257 (343)
T 3civ_A 236 VPVLREVAEAHEKPLFFMEVGC 257 (343)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHHHHCCCCEEEEECCC
T ss_conf 6788988763089869985365
No 38
>1mrb_A CD7 metallothionein-2A; NMR {Oryctolagus cuniculus} SCOP: g.46.1.1
Probab=31.50 E-value=11 Score=17.15 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=11.7
Q ss_pred CCCHHCCCCCCCCCC
Q ss_conf 651004861322441
Q gi|254781120|r 122 VGCSLTCSFCYTGTQ 136 (384)
Q Consensus 122 vGC~m~C~FCaTg~~ 136 (384)
.-|+|||.-||-|-.
T Consensus 5 sccp~gca~caqgci 19 (31)
T 1mrb_A 5 SCCPPGCAKCAQGCI 19 (31)
T ss_dssp SSSCTTCSSCSSSCC
T ss_pred CCCCCCHHHHHCCCE
T ss_conf 347822667722341
No 39
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=31.23 E-value=24 Score=14.66 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=14.5
Q ss_pred EECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 72699988899999999832545
Q gi|254781120|r 288 MLKGINDSPRDALNLIKILKGIP 310 (384)
Q Consensus 288 li~gvNDs~e~a~~L~~ll~~~~ 310 (384)
+=.|.-.++++....++.++...
T Consensus 150 lstG~~~~~~~~~~~~~~~~~~~ 172 (276)
T 1vs1_A 150 LKRGFGNTVEELLAAAEYILLEG 172 (276)
T ss_dssp EECCTTCCHHHHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 66777674889999999998559
No 40
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A, isocitrate lyase, persistence, GLCB, structural genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Probab=30.95 E-value=23 Score=14.75 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=16.3
Q ss_pred EEECCCCHHH--HHHHHHHHHHCCCCCCCC
Q ss_conf 4101454454--289999996037684577
Q gi|254781120|r 183 VMMGMGEPLC--NFDNVKKSLSIASDSMGL 210 (384)
Q Consensus 183 VfMGmGEPl~--N~d~v~~ai~~l~~~~g~ 210 (384)
++---|||.- =+|.++.++--++|-++.
T Consensus 350 il~~dG~eipegi~Da~~t~l~~~hdl~~~ 379 (741)
T 1n8i_A 350 IVDTDGSEVFEGIMDALFTGLIAIHGLKAS 379 (741)
T ss_dssp EEETTCCEEEHHHHHHHHHHHHHGGGGSCC
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 698789889762047999999999887624
No 41
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=30.13 E-value=23 Score=14.74 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=32.9
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 5735899899999999869985457755899999998717999678
Q gi|254781120|r 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQG 52 (384)
Q Consensus 7 ~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~ 52 (384)
+-++||+.+|.+..+..+.+.+ |++ +.+.+|.+|-.+|++
T Consensus 8 p~~ld~s~~E~~~~lr~LEleA----Y~s--vl~Af~Aqg~lswek 47 (102)
T 1uz3_A 8 PTLLDLSRDECKRILRKLELEA----YAG--VISALRAQGDLTKEK 47 (102)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHH----HHH--HHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHCCCCCHHH
T ss_conf 7888853999999999999999----999--999999807898779
No 42
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.01 E-value=25 Score=14.52 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=32.4
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHH
Q ss_conf 58573589989999999986998545775589999999871799967833478899999
Q gi|254781120|r 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 (384)
Q Consensus 5 ~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~ 63 (384)
.++.+...+..++.+||.++|++. |. +..-.+++.+.+.+.+|..+.-+.
T Consensus 14 ~~~P~~~~~~~~V~~WL~~lgL~~----Y~-----~~F~~~g~~~~~~l~~lt~~dL~~ 63 (97)
T 2dl0_A 14 CRKPVSPGCISSVSDWLISIGLPM----YA-----GTLSTAGFSTLSQVPSLSHTCLQE 63 (97)
T ss_dssp CCCCCCCSCCCSHHHHHHHHTCGG----GH-----HHHHHHTCCSTTSGGGCCHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHCCHHH----HH-----HHHHHCCCCCHHHHHHCCHHHHHH
T ss_conf 209999686879999999887699----99-----999987775359887678999988
No 43
>3elg_A Uncharacterized periplasmic protein; YP_001299723.1, putative periplasmic protein of unknown function, structural genomics; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=29.74 E-value=25 Score=14.49 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=32.2
Q ss_pred HHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEE
Q ss_conf 83347889999986202257870234653145443037752477778981554
Q gi|254781120|r 52 GMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104 (384)
Q Consensus 52 ~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~DGT~K~L~~l~d~~~~dg~~IE 104 (384)
+++.||...++.+..+|.-.....++......+...|-..|. +|.+||
T Consensus 9 ~~~~LP~~a~~fi~~~Fp~a~I~~i~~e~d~~~~~~YeV~l~-----ng~ei~ 56 (128)
T 3elg_A 9 DVNKLPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVKLA-----DGIELE 56 (128)
T ss_dssp CGGGSCHHHHHHHHHHCTTSCEEEEEEEECTTCCEEEEEEET-----TSCEEE
T ss_pred CHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEC-----CCCEEE
T ss_conf 845781999999998789994799999669766605999976-----982999
No 44
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Probab=29.60 E-value=21 Score=15.00 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=8.3
Q ss_pred HCCCCHHHHHHHHHCCCCCC
Q ss_conf 33478899999862022578
Q gi|254781120|r 53 MSDISQEVRHLLNQHFSIIY 72 (384)
Q Consensus 53 MtnLpk~lR~~L~e~~~i~~ 72 (384)
+.+++.+.+..-...+.+.+
T Consensus 59 ~~~f~~~t~~ir~~~w~v~~ 78 (528)
T 3cux_A 59 FPKFLEETKRIREADWTIAK 78 (528)
T ss_dssp CCCCCSTTHHHHHSCCCCCC
T ss_pred CCCCCHHHHHHHCCCCCCCC
T ss_conf 99988466776268980689
No 45
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=29.42 E-value=24 Score=14.57 Aligned_cols=16 Identities=6% Similarity=0.480 Sum_probs=8.6
Q ss_pred CCCCCCEEEEEECCCC
Q ss_conf 7877536888513874
Q gi|254781120|r 210 LSFSKRRITLSTSGFV 225 (384)
Q Consensus 210 ~~~~~r~ITvST~Gi~ 225 (384)
+++.+..|-++..|+.
T Consensus 123 l~i~~~~VlvaSTGVI 138 (208)
T 1vra_A 123 FHIPEHYVAVTSTGVI 138 (208)
T ss_dssp HTSCGGGEEEEEEEES
T ss_pred CCCCCCCCEEEECCCC
T ss_conf 1546445057502436
No 46
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=29.02 E-value=26 Score=14.40 Aligned_cols=149 Identities=19% Similarity=0.220 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-----CCCC----CCC
Q ss_conf 7898999999999999722203444434344454586110144101454454289999996037-----6845----778
Q gi|254781120|r 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA-----SDSM----GLS 211 (384)
Q Consensus 141 NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l-----~~~~----g~~ 211 (384)
-++..|+++.+-.+.+..-+.+...+ .==|-|.|+.=+..|...++.= .++. -.+
T Consensus 61 ~~~~~e~~~~~~~I~~a~~~~PvivD----------------~D~GyG~~~~v~rtv~~~~~aG~agi~IEDq~~pKr~g 124 (302)
T 3fa4_A 61 ICTLNDMRANAEMISNISPSTPVIAD----------------ADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCG 124 (302)
T ss_dssp CCCHHHHHHHHHHHHTTSTTSCEEEE----------------CTTTTSSHHHHHHHHHHHHHTTCCEEEECSBCCC----
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEE----------------CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 46799999999999832678874673----------------34578737899999999997588388743564775568
Q ss_pred CCCCEEEEEECCCCHHHHHHHC---CCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 7753688851387414788601---2565179984045511344412331257899999999999862589459999987
Q gi|254781120|r 212 FSKRRITLSTSGFVPNIARVGE---EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 (384)
Q Consensus 212 ~~~r~ITvST~Gi~p~I~~la~---~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvl 288 (384)
....+-.+|+-=.+.+|+-..+ ..... +-+.|-+|..-. +.+++-++-++.|.+ ..-.- +.
T Consensus 125 ~~~~~~l~~~~e~~~ki~Aa~~a~~~~~~d--~~IiARTDa~~~--------~g~~eaI~R~~aY~~-AGAD~-----if 188 (302)
T 3fa4_A 125 HLAGKILVDTDTYVTRIRAAVQARQRIGSD--IVVIARTDSLQT--------HGYEESVARLRAARD-AGADV-----GF 188 (302)
T ss_dssp ---CCCBCCHHHHHHHHHHHHHHHHHHTCC--CEEEEEECCHHH--------HCHHHHHHHHHHHHT-TTCSE-----EE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--EEEEECCCCCCC--------CCHHHHHHHHHHHHH-CCCCC-----EE
T ss_conf 766555568899999999999987615998--699955442122--------899999999998553-48882-----66
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 2699988899999999832545316675127788
Q gi|254781120|r 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 (384)
Q Consensus 289 i~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~ 322 (384)
+.|++ +.++.+++++.+.+.|..+|...++.+|
T Consensus 189 ~~g~~-~~~~~~~i~~~~~~~pl~~n~~~~g~tp 221 (302)
T 3fa4_A 189 LEGIT-SREMARQVIQDLAGWPLLLNMVEHGATP 221 (302)
T ss_dssp ETTCC-CHHHHHHHHHHTTTSCEEEECCTTSSSC
T ss_pred EECCC-CHHHHHHHHHHCCCCCCEECCCCCCCCC
T ss_conf 41466-2677899999724897210133379999
No 47
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, acetylation, DNA condensation, DNA-binding, DNA binding protein; 1.7A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=27.82 E-value=27 Score=14.26 Aligned_cols=36 Identities=28% Similarity=0.584 Sum_probs=26.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC
Q ss_conf 101441014544542899999960376845778775368885138
Q gi|254781120|r 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 (384)
Q Consensus 179 i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~G 223 (384)
-.|+||-| ..|+.|| |..++..|+. |...|++.--|
T Consensus 8 ~~n~I~IG-~Kp~~nY--V~~~i~~~~~------g~~~V~iKArG 43 (97)
T 2bky_A 8 PSNVVLIG-KKPVMNY--VLAALTLLNQ------GVSEIVIKARG 43 (97)
T ss_dssp -CCEEECC-SSCHHHH--HHHHHHHHHT------TCCEEEEEEET
T ss_pred CCCEEEEC-CCCHHHH--HHHHHHHHHC------CCCEEEEEEEC
T ss_conf 77689998-9877999--9999999867------99779999831
No 48
>3eol_A Isocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=27.52 E-value=27 Score=14.22 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=94.0
Q ss_pred ECCCCHHHHHHHHHHHHHCC------CC----CCCCCCCCCEEEEEECCCCHHHHHH--HC-CCCCCEEEEEECCCCHHH
Q ss_conf 01454454289999996037------68----4577877536888513874147886--01-256517998404551134
Q gi|254781120|r 185 MGMGEPLCNFDNVKKSLSIA------SD----SMGLSFSKRRITLSTSGFVPNIARV--GE-EIGVMLAISLHAVSNDLR 251 (384)
Q Consensus 185 MGmGEPl~N~d~v~~ai~~l------~~----~~g~~~~~r~ITvST~Gi~p~I~~l--a~-~~~~~LAiSLha~~~~~R 251 (384)
.|-|+|+.=+.-|...++.= -| ++-.+--.-+..|||.-.+.+|+.- +. .....+ =+-|=+|...
T Consensus 154 tGfG~~~nv~rtvk~~~~AGaAgihiEDQv~~kkkCGH~~gK~lv~~~E~i~ki~Aa~~A~d~~~~~~--~iiARTDA~~ 231 (433)
T 3eol_A 154 AGFGDPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPT--LIVARTDAEA 231 (433)
T ss_dssp ---CCHHHHHHHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCC--EEEEEECTTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE--EEEEECCHHH
T ss_conf 88751899999999999739858987337784221345577732689999999999986254179982--8998267133
Q ss_pred HHHC-----CCCC-----------------CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4412-----3312-----------------57899999999999862589459999987269998889999999983254
Q gi|254781120|r 252 NILV-----PINR-----------------KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 (384)
Q Consensus 252 ~~lm-----Pi~~-----------------~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~ 309 (384)
...+ +..+ +-.++..++.+..|.. . ..-|+|| ----+.++++++++-++ .
T Consensus 232 ~~gl~~~iD~rd~~fi~~e~~rt~eG~y~~~~g~e~ai~Ra~aya~-~-ad~i~~e-----~~~~~~~e~~~f~~~v~-~ 303 (433)
T 3eol_A 232 AKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-Y-CDLIWME-----TSKPDLAQARRFAEAVH-K 303 (433)
T ss_dssp CCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-G-CSEEEEC-----CSSCCHHHHHHHHHHHH-H
T ss_pred HCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH-H-CCEEEEE-----CCCCCHHHHHHHHHHCC-C
T ss_conf 2344002421115555577887710248870688999999985043-0-3678863-----58999999999987417-8
Q ss_pred CCEEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 531667512778879886-88989999999999987987854
Q gi|254781120|r 310 PAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGYSSPI 350 (384)
Q Consensus 310 ~~~vNLIp~N~~~~~~~~-~~~~~~i~~F~~~L~~~Gi~~ti 350 (384)
+.--|+..||-.|-.+|+ .-+.+.+..|+.-|.+.|+...+
T Consensus 304 ~~~~n~l~~~~sP~f~~~~~~~~~~~~~f~~el~~~G~~~~~ 345 (433)
T 3eol_A 304 AHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQF 345 (433)
T ss_dssp HSTTCCEEEECCSSSCHHHHSCHHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 877887403876454765515744779999999855802899
No 49
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens}
Probab=27.29 E-value=26 Score=14.31 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH
Q ss_conf 735899899999999869985457755899999998717999678334788999998
Q gi|254781120|r 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 (384)
Q Consensus 8 ~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L 64 (384)
..-++...++.+|+.++|++. | .+-...+++.+.+.+..+..+.-+.|
T Consensus 20 ~~~~~~~~~V~~WL~~lgL~q----Y-----~~~F~~~gid~~~~l~~l~~~dL~~l 67 (86)
T 2k4p_A 20 HMSGLGEAGMSAWLRAIGLER----Y-----EEGLVHNGWDDLEFLSDITEEDLEEA 67 (86)
T ss_dssp --CCCCSCSSHHHHHTTTCGG----G-----HHHHHTTTCCCHHHHTTCCHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHCCCHH----H-----HHHHHHCCCCCHHHHHCCCHHHHHHC
T ss_conf 878988328999999885499----9-----99999969686899863799999885
No 50
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=26.97 E-value=28 Score=14.15 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred EEECCCCCCHHHHHHHHHHHCC--CCCEEEEEECCCCC---CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 8726999888999999998325--45316675127788---798868898999999999998798785415877
Q gi|254781120|r 287 VMLKGINDSPRDALNLIKILKG--IPAKINLIPFNPWP---GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 (384)
Q Consensus 287 vli~gvNDs~e~a~~L~~ll~~--~~~~vNLIp~N~~~---~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG 355 (384)
.+--|-=-+.+.|+.|.+-|+. +++.| .+-+.+- -.|| ++.+..+...+.|++.|+...|+++-|
T Consensus 11 ~vQvGaF~~~~~A~~l~~~L~~~G~~a~i--~~~~~~yRV~vGpf--~~~~~A~~~~~~L~~~G~~~~i~~~~g 80 (81)
T 1uta_A 11 MVQCGSFRGAEQAETVRAQLAFEGFDSKI--TTNNGWNRVVIGPV--KGKENADSTLNRLKMAGHTNCIRLAAG 80 (81)
T ss_dssp CCBCCEESCHHHHHHHHHHHHHHTCCEEE--EECSSSEEEEESSC--BTTTHHHHHHHHHHHHCCSCCBCCCCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCCEE--ECCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99998768999999999999865984178--22897999998773--999999999999998799986993789
No 51
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=25.40 E-value=23 Score=14.73 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=7.6
Q ss_pred CCEEEEEECCCCHH
Q ss_conf 73389884065100
Q gi|254781120|r 113 RGTLCVSSQVGCSL 126 (384)
Q Consensus 113 r~T~CvSSQvGC~m 126 (384)
-.|++|..-.+.++
T Consensus 135 a~ti~iTn~~~S~l 148 (375)
T 2zj3_A 135 ALTVGITNTVGSSI 148 (375)
T ss_dssp CEEEEEESCTTCHH
T ss_pred CEEEEEECCCCCCC
T ss_conf 92999966899855
No 52
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A
Probab=24.33 E-value=31 Score=13.81 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC----------CCCCCCC
Q ss_conf 8989999999999997222034444343-4445458611014410145445428999999603----------7684577
Q gi|254781120|r 142 LTAEEILLQVLLARSLLGDFPGCEDIEG-MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI----------ASDSMGL 210 (384)
Q Consensus 142 Lt~~EIv~Qv~~~~~~l~~~~~~~~~~~-~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~----------l~~~~g~ 210 (384)
++..|+.+++-.+.+.+.........+. ........||--=-=.|-|.|+.=+.-|...++. +..++-.
T Consensus 113 ~~~~ev~~~v~~I~~a~~~~d~~~~~~~~~~~~~~~~PIIaDaDtGfG~~~nv~rtvk~~i~AGaAgihiEDQv~~~KkC 192 (429)
T 1f8m_A 113 YPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLASEKKC 192 (429)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCSSCCEEEECTTTTSSHHHHHHHHHHHHHTTCSEEEEECBCGGGCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 65566999999999999999999874056654235676442167778849999999999998099499862568623445
Q ss_pred CCCCCEEEEEECCCCHHHHH--HHCC-CCCCEEEEEECCCCHHHHHHC-----CC---------------CCCCCHHHHH
Q ss_conf 87753688851387414788--6012-565179984045511344412-----33---------------1257899999
Q gi|254781120|r 211 SFSKRRITLSTSGFVPNIAR--VGEE-IGVMLAISLHAVSNDLRNILV-----PI---------------NRKYPLEMLI 267 (384)
Q Consensus 211 ~~~~r~ITvST~Gi~p~I~~--la~~-~~~~LAiSLha~~~~~R~~lm-----Pi---------------~~~~~l~~l~ 267 (384)
+--.-+..|||.--+.+|+- ++.+ ..+.+- +-|=+|..-..++ |. --+..+++-+
T Consensus 193 GH~~GK~lVp~~e~i~ki~AAr~a~d~~~~~~v--IiARTDA~aa~li~~~id~rd~~fi~g~r~~eG~y~~~~g~e~AI 270 (429)
T 1f8m_A 193 GHLGGKVLIPTQQHIRTLTSARLAADVADVPTV--VIARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCI 270 (429)
T ss_dssp TTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCE--EEEEECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE--EEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHH
T ss_conf 456886405799999999998754542799858--999747302225533332123433454346675314478899999
Q ss_pred HHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHHCCC
Q ss_conf 999999862589459999987269998889999999983254531667512778879886-8898999999999998798
Q gi|254781120|r 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGY 346 (384)
Q Consensus 268 ~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~-~~~~~~i~~F~~~L~~~Gi 346 (384)
+-+..|.. - +--|.|| ----+.++++++++-++. +...|++.||-.|..+|+ ..+.+.+..|++-|.+.|+
T Consensus 271 ~Ra~aya~-~-ad~i~~e-----~~~~~~e~~~~f~~~v~~-~~~~n~l~~~~sP~fnw~~~~~~~~~~~f~~eL~~~Gy 342 (429)
T 1f8m_A 271 ARAKAYAP-F-ADLIWME-----TGTPDLEAARQFSEAVKA-EYPDQMLAYNCSPSFNWKKHLDDATIAKFQKELAAMGF 342 (429)
T ss_dssp HHHHHHGG-G-CSEEEEC-----CSSCCHHHHHHHHHHHHT-TCTTCEEEEECCTTSCHHHHCCHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHH-C-CCEEEEE-----CCCCCHHHHHHHHHHCCC-CCHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99997464-0-6728972-----589999999999975289-76777305578998870001576767665788883650
Q ss_pred EEEEC
Q ss_conf 78541
Q gi|254781120|r 347 SSPIR 351 (384)
Q Consensus 347 ~~tiR 351 (384)
...+=
T Consensus 343 ~~~~i 347 (429)
T 1f8m_A 343 KFQFI 347 (429)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 18996
No 53
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=23.77 E-value=31 Score=13.74 Aligned_cols=123 Identities=16% Similarity=0.288 Sum_probs=67.6
Q ss_pred CCEEEEEECCC-----CHHHHHHHCCC-CCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 53688851387-----41478860125-6517998404551134441233125789999999999986258945999998
Q gi|254781120|r 214 KRRITLSTSGF-----VPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 (384)
Q Consensus 214 ~r~ITvST~Gi-----~p~I~~la~~~-~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYv 287 (384)
+|.||++=.|+ +..|++..... .|. .++++......+-..=| ..-+++++.++++..-.....+++ ++
T Consensus 5 ~~~i~l~V~GM~C~~C~~~Ie~al~~~~GV~-~v~vn~~~~~a~v~~d~--~~~~~~~i~~~i~~~G~~~~~~~~---~l 78 (151)
T 1p6t_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVT-DANVNLATETVNVIYDP--AETGTAAIQEKIEKLGYHVVTEKA---EF 78 (151)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHHTTSSSEE-EEEEEGGGTEEEEEECT--TTSCHHHHHHHHHHHTCEECCEEE---EE
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCE-EEEEECCCCCCCCCCCC--CCCCHHHHHHHHHCCCCCCCCEEE---EE
T ss_conf 5489999899446899999999986599917-99999003861331275--637988987765323642100056---89
Q ss_pred EECCCCCCHHHHHHHHHHHCCCC----CEEEE------EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 72699988899999999832545----31667------5127788798868898999999999998798785415
Q gi|254781120|r 288 MLKGINDSPRDALNLIKILKGIP----AKINL------IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 288 li~gvNDs~e~a~~L~~ll~~~~----~~vNL------Ip~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
-++|.++. ..+..+.+.++.++ +.||+ |-|+|. .-...+..+.+.+.|+.+.+-.
T Consensus 79 ~v~gm~C~-~c~~~ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~---------~~~~~~i~~~I~~~Gy~~~~~~ 143 (151)
T 1p6t_A 79 DIEGMTCA-ACANRIEKRLNKIEGVANAPVNFALETVTVEYNPK---------EASVSDLKEAVDKLGYKLKLKG 143 (151)
T ss_dssp EESSCCSS-SHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTT---------TCCHHHHHHHHHHHTCCEEESC
T ss_pred EECCCCCH-HHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCC---------CCCHHHHHHHHHHCCCCEEECC
T ss_conf 86687551-45677887531579858999988898899998899---------8999999999996099627778
No 54
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=23.51 E-value=16 Score=15.93 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=17.9
Q ss_pred ECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 40651004861322441110278989999999
Q gi|254781120|r 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 (384)
Q Consensus 120 SQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv 151 (384)
+.-|+=-|..||.||..-. +-.|+..-+
T Consensus 3 ~~~~~l~G~~~v~TG~~~~----~R~e~~~~i 30 (92)
T 1l7b_A 3 KGGEALKGLTFVITGELSR----PREEVKALL 30 (92)
T ss_dssp CCCCSSTTCEEECSTTTTS----CHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCC----CHHHHHHHH
T ss_conf 8898778989999898577----999999999
No 55
>2gv0_A Lysozyme C; hydrolase; 1.90A {Pelodiscus sinensis}
Probab=23.50 E-value=32 Score=13.70 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99899999999869985457755899999998
Q gi|254781120|r 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIY 43 (384)
Q Consensus 12 ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy 43 (384)
++.=||...|...|+|. |+..+|-+||-
T Consensus 4 ~~rCeLAr~L~~~gl~~----f~~~~L~~WvC 31 (131)
T 2gv0_A 4 YEQCELAREFKRHGMDG----YHGYSLGDWVC 31 (131)
T ss_dssp CCHHHHHHHHHHTTCTT----GGGCCHHHHHH
T ss_pred CCHHHHHHHHHHCCCCC----CCCCCHHHHHH
T ss_conf 42809999999808998----76454777899
No 56
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.83 E-value=33 Score=13.61 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HCCCEEEECCCCC
Q ss_conf 879886889899999999999-8798785415877
Q gi|254781120|r 322 PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRG 355 (384)
Q Consensus 322 ~~~~~~~~~~~~i~~F~~~L~-~~Gi~~tiR~srG 355 (384)
++.+|++|+.-.+....++|+ .++|..+|.+.-|
T Consensus 51 ~gIpFR~P~~ygi~~Le~IL~~~~~I~F~Ikrp~~ 85 (89)
T 2dn5_A 51 DDIPFRNPNTYDIHRLEKILKAREHVRMVIINQSG 85 (89)
T ss_dssp TTCCCCCSSSCCHHHHHHHHTTTTTCEEEESSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99857897645779999999714762899825899
No 57
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=22.56 E-value=33 Score=13.58 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=9.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 999872699988899999999832
Q gi|254781120|r 284 FEYVMLKGINDSPRDALNLIKILK 307 (384)
Q Consensus 284 ~EYvli~gvNDs~e~a~~L~~ll~ 307 (384)
..|+++.+-.| ..-+..|.++++
T Consensus 153 ~~i~~~~~~~d-~~~~~~l~~~l~ 175 (191)
T 2p6n_A 153 IATTFINKACD-ESVLMDLKALLL 175 (191)
T ss_dssp EEEEEECTTSC-HHHHHHHHHHHH
T ss_pred EEEEEECCHHH-HHHHHHHHHHHH
T ss_conf 89999898007-999999999999
No 58
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A*
Probab=22.51 E-value=33 Score=13.57 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=11.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 899999960376845778775368885
Q gi|254781120|r 194 FDNVKKSLSIASDSMGLSFSKRRITLS 220 (384)
Q Consensus 194 ~d~v~~ai~~l~~~~g~~~~~r~ITvS 220 (384)
+|.++..++- ..|+.-|.=++++.
T Consensus 224 ~d~lf~~~E~---~lGLp~GtIki~vl 247 (532)
T 3cuz_A 224 WSEVFSYAED---RFNLPRGTIKATLL 247 (532)
T ss_dssp HHHHHHHHHH---HTTCCTTCSEEEEE
T ss_pred HHHHHHHHHH---HHCCCCCCEEEEEE
T ss_conf 9999999999---70998783589986
No 59
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens}
Probab=22.36 E-value=8.4 Score=17.99 Aligned_cols=95 Identities=11% Similarity=0.134 Sum_probs=45.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEE
Q ss_conf 69985457755899999998717999678334788999998620225787023465314544303775247777898155
Q gi|254781120|r 24 IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI 103 (384)
Q Consensus 24 ~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~DGT~K~L~~l~d~~~~dg~~I 103 (384)
+|+|..+..=.+.++-+|+ ..-++++++...=+...|++++.-+.-..-.|.+...+.||..||...-=.+. .+|--+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~p~t~~~~~~~~~~~mr~r~e~~i~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~-~GGGG~ 82 (346)
T 2aex_A 5 LGRPEEEEDELAHRCSSFM-APPVTDLGELRRRPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERK-EGGGGI 82 (346)
T ss_dssp ------CCCHHHHHHHTSS-SCCSSCHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEET-TTEEEE
T ss_pred CCCCCCHHHHHHHHHHHHC-CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CCCCCE
T ss_conf 5787432468999987531-68975578752285889999999999999999999998738997154567268-998842
Q ss_pred EEEECCCC--CCCEEEEEE
Q ss_conf 44302346--773389884
Q gi|254781120|r 104 ETVYIPEK--SRGTLCVSS 120 (384)
Q Consensus 104 EsVlip~~--~r~T~CvSS 120 (384)
-+|+..-. ++.-+=+|+
T Consensus 83 s~vl~~G~VfEKaGVN~S~ 101 (346)
T 2aex_A 83 SCVLQDGCVFEKAGVSISV 101 (346)
T ss_dssp EEEEESCSSEEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEEEEE
T ss_conf 8998489288851079999
No 60
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=22.10 E-value=34 Score=13.51 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 27898999999999999722203444434344454586110144101454454289999996037684577877536888
Q gi|254781120|r 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 (384)
Q Consensus 140 RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITv 219 (384)
.+-+..|+++++.-+-+++.+. |.+| .|-.|-.--.+++.+.+.++.+. ..|..+|.+
T Consensus 142 ~~~~~~~~l~~~~~~v~~ak~~--------------G~~V---~~~~ed~~~~~~~~l~~~~~~~~-----~~Gad~i~l 199 (423)
T 3ivs_A 142 HGKDMTYIIDSATEVINFVKSK--------------GIEV---RFSSEDSFRSDLVDLLSLYKAVD-----KIGVNRVGI 199 (423)
T ss_dssp -----CHHHHHHHHHHHHHHTT--------------TCEE---EEEEESGGGSCHHHHHHHHHHHH-----HHCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCC--------------CCCE---EEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCCC
T ss_conf 6212999999999999887505--------------8611---12014455776899999998876-----139871354
Q ss_pred E-ECCCC-H-HHHHHHCCC--CCCEEEEEECCCCH-----------------HHHHHCCCC---CCCCHHHHHHHHH
Q ss_conf 5-13874-1-478860125--65179984045511-----------------344412331---2578999999999
Q gi|254781120|r 220 S-TSGFV-P-NIARVGEEI--GVMLAISLHAVSND-----------------LRNILVPIN---RKYPLEMLIDACR 271 (384)
Q Consensus 220 S-T~Gi~-p-~I~~la~~~--~~~LAiSLha~~~~-----------------~R~~lmPi~---~~~~l~~l~~a~~ 271 (384)
. |+|.. | .+.++...+ .....+++|.-||- .-..+..+. -.-++++++.++.
T Consensus 200 aDT~G~~~P~~v~~~i~~l~~~~~~~lg~H~HNd~GlA~ANslaAi~aGa~~vd~Ti~GlGeraGNa~le~~i~~L~ 276 (423)
T 3ivs_A 200 ADTVGCATPRQVYDLIRTLRGVVSCDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGERNGITPLGALLARMY 276 (423)
T ss_dssp EETTSCCCHHHHHHHHHHHHHHCSSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHH
T ss_pred CCCCCCCCCHHHHEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 56546627300000133114665552489878985609999999999599721011201487557867899999998
No 61
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.58.18.11 d.58.18.11
Probab=21.78 E-value=18 Score=15.57 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=36.1
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999872699988899999999832545316675127788798----868898999999999998798785
Q gi|254781120|r 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSP 349 (384)
Q Consensus 282 it~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~----~~~~~~~~i~~F~~~L~~~Gi~~t 349 (384)
+..-=++..|+.|.+--+.++.+.|..-...|..|. --.++.. +... ..+.-.+.|+++|+...
T Consensus 69 ~~~~~vvg~~m~~~~G~~a~i~~~L~~~~INI~~i~-~~~s~~~~~~vi~~~---D~~~a~~~L~~~~f~~~ 136 (144)
T 2f06_A 69 VNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMY-SFANNNVANVVIRPS---NMDKCIEVLKEKKVDLL 136 (144)
T ss_dssp EEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEE-EEEETTEEEEEEEES---CHHHHHHHHHHTTCEEE
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE-EECCCCCEEEEEECC---CHHHHHHHHHHCCCEEC
T ss_conf 558987724766785089999999986899879875-233778369999736---59999999998499684
No 62
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens}
Probab=21.13 E-value=35 Score=13.38 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=33.6
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHH
Q ss_conf 8573589989999999986998545775589999999871799967833478899999
Q gi|254781120|r 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 (384)
Q Consensus 6 K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~ 63 (384)
...+-++.+..+.+||.++|++. | .+-.-.+++.+.+....+..+.-+.
T Consensus 13 ~~~~~g~p~~tV~eWL~~igL~q----Y-----~~~F~~~g~~~~~~l~~l~~~dL~~ 61 (86)
T 3kka_C 13 NLYFQGVPFRTVSEWLESIKMQQ----Y-----TEHFMAAGYTAIEKVVQMTNDDIKR 61 (86)
T ss_dssp ----------CHHHHHHHTTCGG----G-----HHHHHHTTCCSHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHCCCHH----H-----HHHHHHCCCCCHHHHHHCCHHHHHH
T ss_conf 75526999555999999885699----9-----9999984988689997689999988
No 63
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=21.00 E-value=35 Score=13.36 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 9999960376845778775368885138741
Q gi|254781120|r 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 (384)
Q Consensus 196 ~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p 226 (384)
.|+++|+.+..+.|...-.-+|+|+-||+.+
T Consensus 161 dvl~~I~~~~t~~g~~~p~~~I~I~~CG~L~ 191 (193)
T 3k2c_A 161 DVVHKIAKYGSESGQVKKGYRIEIRDCGVLG 191 (193)
T ss_dssp HHHHHHHTTCCTTCCCCTTCCEEEEEEEECC
T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 9999999669889993788888998607548
No 64
>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1
Probab=20.54 E-value=36 Score=13.29 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 88999999998325453166751277
Q gi|254781120|r 295 SPRDALNLIKILKGIPAKINLIPFNP 320 (384)
Q Consensus 295 s~e~a~~L~~ll~~~~~~vNLIp~N~ 320 (384)
..+-+..|.+.+-.-++.+-++|.-+
T Consensus 449 ~~~~~~~l~~~~~~s~s~l~i~~lqD 474 (524)
T 1x1n_A 449 EEEISRGLIEGAVSSVARIAIIPMQD 474 (524)
T ss_dssp GGGHHHHHHHHHHTSSCSEEEEEHHH
T ss_pred CHHHHHHHHHHHHHCHHHHHEECHHH
T ss_conf 25799999999985718475042998
Done!