HHSEARCH alignment of GI: 254781120 and SCOP domain: d1olta_

Alignment
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=90.77  E-value=0.59  Score=24.76  Aligned_cols=204  Identities=14%  Similarity=0.275  Sum_probs=110.5

Q ss_pred             CHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHH-HHHHHHHHHHH
Q ss_conf             10048613224411102789899999999999972220344443434445458611014410145445-42899999960
Q gi|254781120|r  124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL-CNFDNVKKSLS  202 (384)
Q Consensus       124 C~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl-~N~d~v~~ai~  202 (384)
                      |+--|.||.--+.--.+.-...+.++.+.   +.+...         .....+++|+.| +-|=|-|- ++-+...+-++
T Consensus        59 C~~~C~yC~~~~~~~~~~~~~~~Y~~~L~---~Ei~~~---------~~~~~~~~v~~i-~~GGGTPt~L~~~~l~~ll~  125 (441)
T d1olta_          59 CHKLCYFCGCNKIVTRQQHKADQYLDALE---QEIVHR---------APLFAGRHVSQL-HWGGGTPTYLNKAQISRLMK  125 (441)
T ss_dssp             ESSCCTTCCSSCEECSCTHHHHHHHHHHH---HHHHHH---------GGGGTTCCEEEE-EEEESCGGGSCHHHHHHHHH
T ss_pred             CCCCCCCCCCEEECCCCCCHHHHHHHHHH---HHHHHH---------HHHCCCCCCCEE-EECCCCCCCCCHHHHHHHHH
T ss_conf             78889989583654888550999999999---999996---------676179850303-86188847789999999999


Q ss_pred             CCCCCCCCCCCC-CEEEEEE--CCCC-HHHHHHHCCCCC-CEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             376845778775-3688851--3874-147886012565-1799840455113444123312578999999999998625
Q gi|254781120|r  203 IASDSMGLSFSK-RRITLST--SGFV-PNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS  277 (384)
Q Consensus       203 ~l~~~~g~~~~~-r~ITvST--~Gi~-p~I~~la~~~~~-~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~  277 (384)
                      .+...  +.+.. .-+|+.+  -.+- ..+..+. +.+| .+-+.+.+-+++..+.   ++|.++.+++.++++.-- ..
T Consensus       126 ~l~~~--~~~~~~~e~t~E~~P~~~~~~~l~~l~-~~G~nRiSlGvQs~~~~vl~~---i~R~~~~~~~~~~~~~~r-~~  198 (441)
T d1olta_         126 LLREN--FQFNADAEISIEVDPREIELDVLDHLR-AEGFNRLSMGVQDFNKEVQRL---VNREQDEEFIFALLNHAR-EI  198 (441)
T ss_dssp             HHHHH--SCEEEEEEEEEEECSSSCCTHHHHHHH-HTTCCEEEEEEECCCHHHHHH---HTCCCCHHHHHHHHHHHH-HT
T ss_pred             HHHHH--CCCCCHHCCCCCCCCCCCCHHHHHHHH-HHCCCEEEECCHHCCHHHHHH---HHCCCCHHHHHHHHHHHH-HC
T ss_conf             87652--234500002210234542057899999-719855995120013045544---305787899999999877-41


Q ss_pred             CCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCC--------CCCH-HHHHHH---HHHHHH
Q ss_conf             894599999872699-98889999999983254-531667512778879886--------8898-999999---999998
Q gi|254781120|r  278 NARRITFEYVMLKGI-NDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL--------CSDQ-KDIVTF---SECIKR  343 (384)
Q Consensus       278 ~~rrit~EYvli~gv-NDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~~~--------~~~~-~~i~~F---~~~L~~  343 (384)
                      .-..|.+  =||=|+ +.+.++..+-.+.+..+ +-+|.+-+|...|+....        .|+. ++.+.|   .+.|.+
T Consensus       199 g~~~vn~--DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L~~  276 (441)
T d1olta_         199 GFTSTNI--DLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQ  276 (441)
T ss_dssp             TCCSCEE--EEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             4423623--54432377603778899989985088742232211246126766302232002457888999999999987


Q ss_pred             CCCEEE
Q ss_conf             798785
Q gi|254781120|r  344 SGYSSP  349 (384)
Q Consensus       344 ~Gi~~t  349 (384)
                      +|+.-.
T Consensus       277 ~GY~~~  282 (441)
T d1olta_         277 SGYQFI  282 (441)
T ss_dssp             TTCEEE
T ss_pred             CCCHHH
T ss_conf             383101


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]