HHSEARCH alignment of GI: 254781120 and SCOP domain: d1r30a_

Alignment
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}
Probab=98.17  E-value=5e-05  Score=54.89  Aligned_cols=189  Identities=13%  Similarity=0.192  Sum_probs=109.4

Q ss_pred             EEECCCCHHCCCCCCCCC-----CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf             884065100486132244-----111027898999999999999722203444434344454586110144101454454
Q gi|254781120|r  118 VSSQVGCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC  192 (384)
Q Consensus       118 vSSQvGC~m~C~FCaTg~-----~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~  192 (384)
                      ++|- ||+.+|.||+-.+     ....+.++..||++++..+.+.                    -++.+++.|=..|..
T Consensus        45 ~~Tn-gC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~--------------------G~~~~~~~~g~~~~~  103 (312)
T d1r30a_          45 IKTG-ACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA--------------------GSTRFCMGAAWKNPH  103 (312)
T ss_dssp             EECS-CBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT--------------------TCSEEEEEECCSSCC
T ss_pred             EECC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCEEEEECCCCCCCC
T ss_conf             5189-9888698399876689887642124557899999999974--------------------998999705777874


Q ss_pred             --HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHH
Q ss_conf             --289999996037684577877536888513874--1478860125651799840455113444123312578999999
Q gi|254781120|r  193 --NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID  268 (384)
Q Consensus       193 --N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~  268 (384)
                        ..+.+...++.+.. ..+     .+.++ +|.+  ..+++|.+----.+.+.+-+ .++.+. .++  ++.+.++.++
T Consensus       104 ~~~~~~~~~~i~~~~~-~~~-----~~~~~-~~~l~~e~l~~lk~aG~~~i~~~iEs-~~~~~~-~~~--~~~~~~~~~~  172 (312)
T d1r30a_         104 ERDMPYLEQMVQGVKA-MGL-----EACMT-LGTLSESQAQRLANAGLDYYNHNLDT-SPEFYG-NII--TTRTYQERLD  172 (312)
T ss_dssp             TTTHHHHHHHHHHHHH-TTS-----EEEEE-CSSCCHHHHHHHHHHCCCEEECCCBS-CHHHHH-HHC--CSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-CCC-----EEEEC-CCCCHHHHHHHHHCCCCEEEECCCCH-HHHHHC-CCC--CCCCHHHHHH
T ss_conf             0668999999985211-363-----23201-11103999888653460067421121-455533-478--9999999999


Q ss_pred             HHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCCCCCCCCC---CCCHHHHHHHHHHHH
Q ss_conf             999998625894599999872699988899999999832545---31667512778879886---889899999999999
Q gi|254781120|r  269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYL---CSDQKDIVTFSECIK  342 (384)
Q Consensus       269 a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~---~~vNLIp~N~~~~~~~~---~~~~~~i~~F~~~L~  342 (384)
                      +++...+ . |-+++.  .+|=|.-++.+|..+....++.+.   ..|-+.++.|.++.++.   +++.+.......+.+
T Consensus       173 ~~~~a~~-~-Gi~~~~--~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~R  248 (312)
T d1r30a_         173 TLEKVRD-A-GIKVCS--GGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVAR  248 (312)
T ss_dssp             HHHHHHH-H-HCEEEC--CEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHH-H-CCCEEC--CEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999998-3-466300--25755768679999999999855778876430541689984324456898899999999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]