BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781120|ref|YP_003065533.1| radical SAM protein
[Candidatus Liberibacter asiaticus str. psy62]
(384 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|118592064|ref|ZP_01549458.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614]
gi|118435360|gb|EAV42007.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614]
Length = 407
Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats.
Identities = 252/379 (66%), Positives = 311/379 (82%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +LIG+ REEL EAL IG+PQ+ RMR SQ+W W+YVRG+ DF M++I++++R L
Sbjct: 29 DKPTLIGLSREELGEALGTIGVPQKQWRMRASQLWHWLYVRGVSDFAQMTNIAKDLRQKL 88
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ F+I PEIV E+IS DGTRKWL RFPAR G PVE+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 89 DEAFTIARPEIVSEQISVDGTRKWLFRFPARGAGRPVEVETVYIPEEGRGTLCVSSQVGC 148
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTC+FC+TGTQK+VRNLTAEEIL Q+L+AR LGDFP + +G ++PS GR ++NIVM
Sbjct: 149 TLTCTFCHTGTQKMVRNLTAEEILSQILIARDRLGDFPHADTPQGAIVPSEGRLVTNIVM 208
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNVKK+L IASD GLS SKRRITLSTSG VP I R GEEIG MLAISLH
Sbjct: 209 MGMGEPLYNFDNVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGCMLAISLH 268
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR++LVPIN+K+ ++ L+DACR YPGLSNA+RITFEYVMLKG+NDS +DAL L++
Sbjct: 269 AVRDELRDVLVPINKKWNIKELLDACRQYPGLSNAKRITFEYVMLKGVNDSNKDALELVR 328
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 329 LLKGIPAKINLIPFNPWPGTDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 388
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+R+ K R+ + +
Sbjct: 389 LKSASERMRKKDREALAAS 407
>gi|110635192|ref|YP_675400.1| radical SAM protein [Mesorhizobium sp. BNC1]
gi|122965694|sp|Q11EE0|RLMN_MESSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|110286176|gb|ABG64235.1| 23S rRNA m(2)A-2503 methyltransferase [Chelativorans sp. BNC1]
Length = 408
Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats.
Identities = 258/385 (67%), Positives = 313/385 (81%), Gaps = 3/385 (0%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++K+ LIG+ REE+ +AL IG+P+R V MR Q+W W+YVRG+ DF M +IS+E+R
Sbjct: 21 TVEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRA 80
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L++HF+I PEIV+E+IS DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLC+SSQV
Sbjct: 81 KLDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQV 140
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTCSFC+TGTQK+VRNLTA EIL Q+L+AR LGDFP + +G ++P+ GRKI+NI
Sbjct: 141 GCTLTCSFCHTGTQKMVRNLTAGEILDQLLIARDRLGDFPDADTPDGAIVPAEGRKITNI 200
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL NF+NVK++L +ASD GLS SKRRITLSTSG VP I R GEEIG+MLAIS
Sbjct: 201 VMMGMGEPLYNFENVKQALLVASDGDGLSLSKRRITLSTSGVVPEIYRTGEEIGIMLAIS 260
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LRN LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA L
Sbjct: 261 LHAVRDELRNELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKGVNDSLDDAREL 320
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++LKGIPAKINLIPFNPWPG Y CSD + I F+E + R+GY+SPIRTPRG DILAAC
Sbjct: 321 VRLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFAELVNRAGYASPIRTPRGRDILAAC 380
Query: 363 GQLKSLSKRIPKVPR---QEMQITG 384
GQLKS S+R+ K R + M I G
Sbjct: 381 GQLKSASERMKKTERLKLEAMMIAG 405
>gi|205829733|sp|Q7CWI1|RLMN_AGRT5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 409
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 254/386 (65%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Query: 2 NFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ + K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+
Sbjct: 18 DLMSGKPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKEL 77
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SS
Sbjct: 78 REKLKAAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISS 137
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSLTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+S
Sbjct: 138 QVGCSLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVS 197
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIVMMGMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLA
Sbjct: 198 NIVMMGMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLA 257
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHAV +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA
Sbjct: 258 ISLHAVRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAK 317
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+++LKG+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILA
Sbjct: 318 MLVQLLKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILA 377
Query: 361 ACGQLKSLSKRIPKVPR---QEMQIT 383
ACGQLKS S+R+ K R + M I
Sbjct: 378 ACGQLKSESERMRKTERLAFEAMMIA 403
>gi|325294043|ref|YP_004279907.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp.
H13-3]
gi|325061896|gb|ADY65587.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp.
H13-3]
Length = 412
Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats.
Identities = 254/386 (65%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Query: 2 NFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ + K SLIGM REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+
Sbjct: 21 DLMSGKPSLIGMTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKEL 80
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SS
Sbjct: 81 REKLKAAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISS 140
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSLTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+S
Sbjct: 141 QVGCSLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVS 200
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIVMMGMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLA
Sbjct: 201 NIVMMGMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLA 260
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHAV +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA
Sbjct: 261 ISLHAVRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAK 320
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+++L+G+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILA
Sbjct: 321 MLVQLLRGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILA 380
Query: 361 ACGQLKSLSKRIPKVPR---QEMQIT 383
ACGQLKS S+R+ K R + M I
Sbjct: 381 ACGQLKSESERMRKTERLAFEAMMIA 406
>gi|328541802|ref|YP_004301911.1| ribosomal RNA large subunit methyltransferase N [polymorphum gilvum
SL003B-26A1]
gi|326411554|gb|ADZ68617.1| Ribosomal RNA large subunit methyltransferase N [Polymorphum gilvum
SL003B-26A1]
Length = 414
Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 249/377 (66%), Positives = 306/377 (81%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ +LIG+ R+EL +A+ +IG+P++ RMR +Q+W W+YVRG+ DF M++I++++R L
Sbjct: 35 DRPTLIGLTRDELADAMGEIGVPEKQRRMRAAQLWHWLYVRGVSDFALMTNIAKDLRQQL 94
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F+I PEIV E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLCVSSQVGC
Sbjct: 95 DARFTIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGC 154
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTC+FC+TGTQKLVRNLTAEEIL Q+L+AR LGDFP +G V+PS GR +SNIVM
Sbjct: 155 TLTCTFCHTGTQKLVRNLTAEEILSQILMARDRLGDFPDAATPQGAVVPSEGRLVSNIVM 214
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG VP IAR G EIG MLAISLH
Sbjct: 215 MGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIARAGAEIGCMLAISLH 274
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV++DLR++LVPINRK+ + L+DACR YPGLSNA+RITFEYVMLKG+NDS DA L++
Sbjct: 275 AVNDDLRDVLVPINRKWRIRDLLDACRAYPGLSNAKRITFEYVMLKGVNDSDADARELVR 334
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 335 LLKGIPAKINLIPFNPWPGSDYECSDWERIEQFADIVNRAGYASPIRTPRGRDIFAACGQ 394
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS S+R+ K R+ +
Sbjct: 395 LKSASERMRKKDREAVA 411
>gi|159185320|ref|NP_355610.2| hypothetical protein Atu2673 [Agrobacterium tumefaciens str. C58]
gi|159140577|gb|AAK88395.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 390
Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats.
Identities = 254/381 (66%), Positives = 308/381 (80%), Gaps = 3/381 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+R L
Sbjct: 4 KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 63
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SSQVGCS
Sbjct: 64 AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 123
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+SNIVMM
Sbjct: 124 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 183
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 184 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 243
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA L+++
Sbjct: 244 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 303
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 304 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 363
Query: 366 KSLSKRIPKVPR---QEMQIT 383
KS S+R+ K R + M I
Sbjct: 364 KSESERMRKTERLAFEAMMIA 384
>gi|23500991|ref|NP_697118.1| hypothetical protein BR0077 [Brucella suis 1330]
gi|81753358|sp|Q8G374|RLMN_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|23346851|gb|AAN29033.1| conserved hypothetical protein TIGR00048 [Brucella suis 1330]
Length = 411
Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats.
Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD G S SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGPSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408
>gi|114705378|ref|ZP_01438286.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506]
gi|114540163|gb|EAU43283.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506]
Length = 407
Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats.
Identities = 246/378 (65%), Positives = 305/378 (80%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ SLIGM REEL EAL +G+P + VRMRT+Q+W W+YVRG+ DF M+++S+++R+ L
Sbjct: 28 ERTSLIGMSREELGEALAAVGVPAKQVRMRTAQLWHWLYVRGVSDFAHMANVSKDLRNKL 87
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ ++I PEIV E++S DGTRKW+ RFP R G PVEIETVYIPE+ RGTLCVSSQVGC
Sbjct: 88 DAAYTIARPEIVTEQVSVDGTRKWVFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGC 147
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTC+FC+TGTQ+LVRNLTA EI+ QVLLAR LGDFP + G ++PS GR +SN+VM
Sbjct: 148 TLTCTFCHTGTQRLVRNLTAGEIVSQVLLARERLGDFPDVDTPAGAIVPSEGRLVSNVVM 207
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV +L + SD GLS SKRRITLSTSG VP I R GEE GVMLAISLH
Sbjct: 208 MGMGEPLYNFDNVATALGVISDGEGLSVSKRRITLSTSGVVPEIVRAGEETGVMLAISLH 267
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV+++LR+ LVPIN+KYPL L++ACR+YPGLSNA+RITFEYVMLKG+NDS DA NL++
Sbjct: 268 AVNDELRDELVPINKKYPLATLLEACRNYPGLSNAKRITFEYVMLKGVNDSMEDARNLVR 327
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD I F++ + ++GY+SPIRTPRG DI AACGQ
Sbjct: 328 MLKGIPAKINLIPFNPWPGSRYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFAACGQ 387
Query: 365 LKSLSKRIPKVPRQEMQI 382
LKS S+R+ K R +++
Sbjct: 388 LKSESERMRKKDRDRIEL 405
>gi|254504202|ref|ZP_05116353.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11]
gi|222440273|gb|EEE46952.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11]
Length = 421
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 248/377 (65%), Positives = 306/377 (81%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +LIG+ REEL EAL IG+PQ+ RMR+SQ+W W+YVRG+ DF MS+I++++R L
Sbjct: 38 DKPTLIGLSREELGEALGTIGVPQKQWRMRSSQLWHWLYVRGVSDFAEMSNIAKDLRSKL 97
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ F+I P+IV E+IS DGTRKWL +FP R G PVE+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 98 DEAFTIARPKIVSEQISVDGTRKWLFQFPPRGAGNPVEVETVYIPEEGRGTLCVSSQVGC 157
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR LGDFP +G ++PS GR ++NIVM
Sbjct: 158 TLTCTFCHTGTQKLVRNLTSEEILSQILIARDRLGDFPDAHTPQGAIVPSEGRLVTNIVM 217
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG VP I R G+EIG MLAISLH
Sbjct: 218 MGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGDEIGCMLAISLH 277
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++ R+ILVPIN+K+ ++ L+DACR+YPGLSNA+RITFEYVMLK INDS DAL L++
Sbjct: 278 AVRDEDRDILVPINKKWNIKELLDACRNYPGLSNAKRITFEYVMLKDINDSNEDALELVR 337
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 338 LLKGIPAKINLIPFNPWPGSQYACSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 397
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS S+R+ K R +
Sbjct: 398 LKSTSERMRKKDRDALA 414
>gi|227823764|ref|YP_002827737.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii
NGR234]
gi|259491994|sp|C3MAJ1|RLMN_RHISN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|227342766|gb|ACP26984.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii
NGR234]
Length = 411
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 258/382 (67%), Positives = 318/382 (83%), Gaps = 3/382 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L
Sbjct: 25 EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQLWHWLYVRGVSDFDQMSNVSKDMREML 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+HF++ PEIV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 85 KEHFTVARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+NIVM
Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 205 MGMGEPLYNFDNVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV+++LR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS +DA L+K
Sbjct: 265 AVNDELRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLQDAKELVK 324
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEAFADFINQAGYASPIRTPRGRDILAACGQ 384
Query: 365 LKSLSKRIPKVPR---QEMQIT 383
LKS S+R+ KV R + M I
Sbjct: 385 LKSESERMRKVDRLAFEAMMIA 406
>gi|256112582|ref|ZP_05453503.1| radical SAM protein [Brucella melitensis bv. 3 str. Ether]
gi|265994024|ref|ZP_06106581.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 3 str. Ether]
gi|262765005|gb|EEZ10926.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 3 str. Ether]
Length = 411
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408
>gi|307942545|ref|ZP_07657893.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4]
gi|307774184|gb|EFO33397.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4]
Length = 406
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 250/377 (66%), Positives = 308/377 (81%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+G+ RE+L EAL IGIP + RMR +Q+W W+YVRG+ DF M++I++++R L
Sbjct: 30 EKPNLVGLDREQLAEALGGIGIPVKQQRMRVAQLWHWLYVRGVSDFGAMTNIAKDLRAQL 89
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++FSI PEIV E+IS DGTRKWL RFP R G PVE+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 90 EENFSIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGC 149
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR LLGDFP + +G ++PS GR +SNIVM
Sbjct: 150 TLTCTFCHTGTQKLVRNLTSEEILAQILMARDLLGDFPEAKTPQGAIVPSEGRLVSNIVM 209
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NVK++L IASD GLS SKRRITLSTSG VP IAR G+EIG MLAISLH
Sbjct: 210 MGMGEPLYNFENVKRALLIASDGDGLSLSKRRITLSTSGVVPEIARTGDEIGCMLAISLH 269
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV +DLR++LVPIN+K+ LE L+D CR YPGLSNA+RITFEYVMLKG+NDS DA L++
Sbjct: 270 AVRDDLRDVLVPINKKWSLEKLLDTCRAYPGLSNAKRITFEYVMLKGVNDSNADAKQLVQ 329
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 330 LLKGIPAKINLIPFNPWPGSDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 389
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS S+R+ K R+ +
Sbjct: 390 LKSASERMRKKDREALA 406
>gi|17988150|ref|NP_540784.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M]
gi|148559330|ref|YP_001258119.1| hypothetical protein BOV_0076 [Brucella ovis ATCC 25840]
gi|161618064|ref|YP_001591951.1| radical SAM protein [Brucella canis ATCC 23365]
gi|163842351|ref|YP_001626755.1| radical SAM protein [Brucella suis ATCC 23445]
gi|225626623|ref|ZP_03784662.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo]
gi|254694877|ref|ZP_05156705.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
gi|254700891|ref|ZP_05162719.1| radical SAM protein [Brucella suis bv. 5 str. 513]
gi|254705255|ref|ZP_05167083.1| radical SAM protein [Brucella suis bv. 3 str. 686]
gi|254707222|ref|ZP_05169050.1| radical SAM protein [Brucella pinnipedialis M163/99/10]
gi|254709233|ref|ZP_05171044.1| radical SAM protein [Brucella pinnipedialis B2/94]
gi|254713344|ref|ZP_05175155.1| radical SAM protein [Brucella ceti M644/93/1]
gi|254716302|ref|ZP_05178113.1| radical SAM protein [Brucella ceti M13/05/1]
gi|254718297|ref|ZP_05180108.1| radical SAM protein [Brucella sp. 83/13]
gi|256030756|ref|ZP_05444370.1| radical SAM protein [Brucella pinnipedialis M292/94/1]
gi|256045869|ref|ZP_05448743.1| radical SAM protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256158774|ref|ZP_05456640.1| radical SAM protein [Brucella ceti M490/95/1]
gi|256254161|ref|ZP_05459697.1| radical SAM protein [Brucella ceti B1/94]
gi|256368543|ref|YP_003106049.1| radical SAM protein [Brucella microti CCM 4915]
gi|260169660|ref|ZP_05756471.1| radical SAM protein [Brucella sp. F5/99]
gi|260563156|ref|ZP_05833642.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 1 str. 16M]
gi|260567277|ref|ZP_05837747.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
4 str. 40]
gi|261215209|ref|ZP_05929490.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
gi|261218081|ref|ZP_05932362.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M13/05/1]
gi|261221308|ref|ZP_05935589.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
B1/94]
gi|261314704|ref|ZP_05953901.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis M163/99/10]
gi|261316737|ref|ZP_05955934.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis B2/94]
gi|261321072|ref|ZP_05960269.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M644/93/1]
gi|261751404|ref|ZP_05995113.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
5 str. 513]
gi|261755967|ref|ZP_05999676.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
3 str. 686]
gi|261759193|ref|ZP_06002902.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
F5/99]
gi|265983258|ref|ZP_06095993.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
83/13]
gi|265987808|ref|ZP_06100365.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis M292/94/1]
gi|265992284|ref|ZP_06104841.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 1 str. Rev.1]
gi|265997270|ref|ZP_06109827.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M490/95/1]
gi|306838909|ref|ZP_07471737.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653]
gi|81851121|sp|Q8YEL1|RLMN_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829674|sp|A9M6S9|RLMN_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829675|sp|A5VN22|RLMN_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829676|sp|B0CII9|RLMN_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|17983908|gb|AAL53048.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M]
gi|148370587|gb|ABQ60566.1| conserved hypothetical protein TIGR00048 [Brucella ovis ATCC 25840]
gi|161334875|gb|ABX61180.1| radical SAM enzyme, Cfr family [Brucella canis ATCC 23365]
gi|163673074|gb|ABY37185.1| radical SAM enzyme, Cfr family [Brucella suis ATCC 23445]
gi|225618280|gb|EEH15323.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo]
gi|255998701|gb|ACU47100.1| radical SAM protein [Brucella microti CCM 4915]
gi|260153172|gb|EEW88264.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 1 str. 16M]
gi|260156795|gb|EEW91875.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
4 str. 40]
gi|260916816|gb|EEX83677.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
gi|260919892|gb|EEX86545.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
B1/94]
gi|260923170|gb|EEX89738.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M13/05/1]
gi|261293762|gb|EEX97258.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M644/93/1]
gi|261295960|gb|EEX99456.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis B2/94]
gi|261303730|gb|EEY07227.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis M163/99/10]
gi|261739177|gb|EEY27173.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
F5/99]
gi|261741157|gb|EEY29083.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
5 str. 513]
gi|261745720|gb|EEY33646.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
3 str. 686]
gi|262551738|gb|EEZ07728.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M490/95/1]
gi|263003350|gb|EEZ15643.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 1 str. Rev.1]
gi|264660005|gb|EEZ30266.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis M292/94/1]
gi|264661850|gb|EEZ32111.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
83/13]
gi|306406025|gb|EFM62276.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653]
Length = 411
Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats.
Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408
>gi|225851618|ref|YP_002731851.1| radical SAM protein [Brucella melitensis ATCC 23457]
gi|256264871|ref|ZP_05467403.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 2 str. 63/9]
gi|254807158|sp|C0RGD9|RLMN_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|225639983|gb|ACN99896.1| radical SAM enzyme, Cfr family protein [Brucella melitensis ATCC
23457]
gi|263095326|gb|EEZ18953.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 2 str. 63/9]
gi|326408090|gb|ADZ65155.1| radical SAM protein [Brucella melitensis M28]
gi|326537806|gb|ADZ86021.1| radical SAM enzyme, Cfr family protein [Brucella melitensis M5-90]
Length = 411
Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats.
Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRSAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408
>gi|13473680|ref|NP_105248.1| hypothetical protein mlr4359 [Mesorhizobium loti MAFF303099]
gi|81778968|sp|Q98E86|RLMN_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|14024431|dbj|BAB51034.1| mlr4359 [Mesorhizobium loti MAFF303099]
Length = 410
Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats.
Identities = 259/384 (67%), Positives = 308/384 (80%), Gaps = 4/384 (1%)
Query: 5 KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+K SLIG+ R EL EAL+ G +P+R +MR Q+W W+YVRG+ DF GM +IS+++R
Sbjct: 23 EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 82
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 83 LDKHFTVARPEIVEEQISSDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 142
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+LTCSFC+TGTQKLVRNLT EEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV
Sbjct: 143 CTLTCSFCHTGTQKLVRNLTTEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 202
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 203 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 262
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS DA LI
Sbjct: 263 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 322
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG
Sbjct: 323 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 382
Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
QLKS S+R+ KV R + M I G
Sbjct: 383 QLKSESERMRKVDRLALEAMMIAG 406
>gi|205829900|sp|Q2K3B1|RLMN_RHIEC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 409
Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats.
Identities = 258/382 (67%), Positives = 312/382 (81%), Gaps = 3/382 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG+ REE+ AL + G+P++ ++MR SQ+W WIYVRG+ DF M+++++++R +L
Sbjct: 22 EKPSLIGLSREEMAAALREKGVPEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREML 81
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK
Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ
Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381
Query: 365 LKSLSKRIPKVPR---QEMQIT 383
LKS S+R+ K R + M I
Sbjct: 382 LKSESERMRKTERLAFEAMMIA 403
>gi|239830929|ref|ZP_04679258.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301]
gi|239823196|gb|EEQ94764.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301]
Length = 411
Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats.
Identities = 259/382 (67%), Positives = 310/382 (81%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ +AL+K+G+P+R +MR SQ+W W+YVRG+ DF M +IS+++R LL
Sbjct: 27 KPSLIGMSREEMAQALIKVGVPERQTKMRISQLWHWLYVRGVSDFADMRNISKDLRALLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERMRKSERLALEAMMIAG 408
>gi|306846345|ref|ZP_07478896.1| radical SAM enzyme, Cfr family [Brucella sp. BO1]
gi|306273188|gb|EFM55079.1| radical SAM enzyme, Cfr family [Brucella sp. BO1]
Length = 411
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 258/382 (67%), Positives = 308/382 (80%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408
>gi|153007435|ref|YP_001368650.1| radical SAM protein [Ochrobactrum anthropi ATCC 49188]
gi|205829793|sp|A6WV17|RLMN_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|151559323|gb|ABS12821.1| radical SAM enzyme, Cfr family [Ochrobactrum anthropi ATCC 49188]
Length = 411
Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats.
Identities = 260/382 (68%), Positives = 310/382 (81%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ EAL+K G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAEALIKAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLCVSSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCVSSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CS+ + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSEWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERMRKSERLALEAMMIAG 408
>gi|15966967|ref|NP_387320.1| hypothetical protein SMc03831 [Sinorhizobium meliloti 1021]
gi|307301740|ref|ZP_07581499.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C]
gi|307316235|ref|ZP_07595679.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83]
gi|81633717|sp|Q92L68|RLMN_RHIME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|15076240|emb|CAC47793.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306898075|gb|EFN28817.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83]
gi|306903438|gb|EFN34027.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C]
Length = 411
Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats.
Identities = 257/382 (67%), Positives = 315/382 (82%), Gaps = 3/382 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG++R+++ + L + G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L
Sbjct: 25 EKPSLIGLLRDDIAKLLAEKGVPERQVKMRVSQLWHWLYVRGVSDFDEMSNVSKDMREML 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+HF+I P+IV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 85 KEHFTIARPDIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+NIVM
Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILSQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 205 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS DA L+K
Sbjct: 265 AVRDDLRDMLVPINKKYPLKQLMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 324
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 384
Query: 365 LKSLSKRIPKVPR---QEMQIT 383
LKS S+R+ KV R + M I
Sbjct: 385 LKSESERMRKVDRLAFEAMMIA 406
>gi|209551296|ref|YP_002283213.1| radical SAM protein [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|254807197|sp|B5ZTF1|RLMN_RHILW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|209537052|gb|ACI56987.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 408
Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats.
Identities = 254/384 (66%), Positives = 311/384 (80%), Gaps = 3/384 (0%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
L+K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R
Sbjct: 19 SLEKPSLIGLSREEMGAALRERGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMRE 78
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L QHF+I PEIV+E++S DGTRKWLLRFP R G PVEIE VYIPE+ RGTLC+SSQV
Sbjct: 79 MLKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQV 138
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNI
Sbjct: 139 GCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNI 198
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAIS
Sbjct: 199 VMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAIS 258
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLSNARRITFEYVMLK +NDS DA L
Sbjct: 259 LHAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGL 318
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
IK+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAAC
Sbjct: 319 IKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAAC 378
Query: 363 GQLKSLSKRIPKVPR---QEMQIT 383
GQLKS S+R+ K R + M I
Sbjct: 379 GQLKSESERMRKTERLAFEAMMIA 402
>gi|306842623|ref|ZP_07475272.1| radical SAM enzyme, Cfr family [Brucella sp. BO2]
gi|306287268|gb|EFM58756.1| radical SAM enzyme, Cfr family [Brucella sp. BO2]
Length = 411
Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats.
Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ L+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAATLIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408
>gi|150398262|ref|YP_001328729.1| radical SAM protein [Sinorhizobium medicae WSM419]
gi|205829889|sp|A6UE14|RLMN_SINMW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|150029777|gb|ABR61894.1| radical SAM enzyme, Cfr family [Sinorhizobium medicae WSM419]
Length = 413
Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats.
Identities = 258/382 (67%), Positives = 316/382 (82%), Gaps = 3/382 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L
Sbjct: 27 EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQVWHWLYVRGVSDFNEMSNVSKDMREML 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ HF+I PEIV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87 SAHFTIARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+N+VM
Sbjct: 147 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPDRDTPQGAIVPAEGRKITNVVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 207 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS DA L+K
Sbjct: 267 AVRDDLRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 326
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 386
Query: 365 LKSLSKRIPKVPR---QEMQIT 383
LKS S+R+ KV R + M I
Sbjct: 387 LKSDSERMRKVDRLAFEAMMIA 408
>gi|260467307|ref|ZP_05813481.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum
WSM2075]
gi|259028911|gb|EEW30213.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum
WSM2075]
Length = 466
Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats.
Identities = 261/384 (67%), Positives = 309/384 (80%), Gaps = 4/384 (1%)
Query: 5 KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+K SLIG+ R EL EAL+ G +P+R +MR Q+W W+YVRG+ DF GM +IS+++R
Sbjct: 79 EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 138
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 139 LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 198
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV
Sbjct: 199 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 258
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 259 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 318
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNARRITFEYVMLK +NDS DA LI
Sbjct: 319 HATNDDLRDLLVPINKKYPLKDLIAACRAYPGLSNARRITFEYVMLKDVNDSIEDAKGLI 378
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG
Sbjct: 379 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 438
Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
QLKS S+R+ KV R + M I G
Sbjct: 439 QLKSESERMRKVDRLALEAMMIAG 462
>gi|327190218|gb|EGE57323.1| hypothetical protein RHECNPAF_44600102 [Rhizobium etli CNPAF512]
Length = 411
Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats.
Identities = 256/382 (67%), Positives = 311/382 (81%), Gaps = 3/382 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L
Sbjct: 24 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 83
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 84 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 143
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM
Sbjct: 144 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 203
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 204 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 263
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK
Sbjct: 264 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 323
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ
Sbjct: 324 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 383
Query: 365 LKSLSKRIPKVPR---QEMQIT 383
LKS S+R+ K R + M I
Sbjct: 384 LKSESERMRKTERLAFEAMMIA 405
>gi|116254249|ref|YP_770087.1| hypothetical protein RL4522 [Rhizobium leguminosarum bv. viciae
3841]
gi|123384474|sp|Q1MAN2|RLMN_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|115258897|emb|CAK10006.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 408
Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 256/384 (66%), Positives = 311/384 (80%), Gaps = 3/384 (0%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
L+K SLIGM REE+ AL + G+ ++ ++MR SQ+W WIYVRG+ DF M+++++++R
Sbjct: 19 SLEKPSLIGMSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMRE 78
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L QHF+I PEIV+E++S DGTRKWLLRFP R G PVEIE VYIPE+ RGTLC+SSQV
Sbjct: 79 MLKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQV 138
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNI
Sbjct: 139 GCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNI 198
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAIS
Sbjct: 199 VMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAIS 258
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS DA L
Sbjct: 259 LHAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGL 318
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
IK+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAAC
Sbjct: 319 IKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAAC 378
Query: 363 GQLKSLSKRIPKVPR---QEMQIT 383
GQLKS S+R+ K R + M I
Sbjct: 379 GQLKSESERMRKTERLAFEAMMIA 402
>gi|319780692|ref|YP_004140168.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166580|gb|ADV10118.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 411
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 259/384 (67%), Positives = 309/384 (80%), Gaps = 4/384 (1%)
Query: 5 KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+K+SLIG+ R EL E L+ G +P+R +MR Q+W W+YVRG+ DF GM +IS+++R
Sbjct: 24 EKQSLIGLTRIELAETLVASGAVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 83
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 84 LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 143
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV
Sbjct: 144 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 203
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 204 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 263
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS DA LI
Sbjct: 264 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 323
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG
Sbjct: 324 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 383
Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
QLKS S+R+ KV R + M I G
Sbjct: 384 QLKSDSERMRKVDRLALEAMMIAG 407
>gi|163757380|ref|ZP_02164469.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica
DFL-43]
gi|162284882|gb|EDQ35164.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica
DFL-43]
Length = 410
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 251/382 (65%), Positives = 305/382 (79%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+GM R+EL A+ + G+P+R +MR +Q+W W+YVRG DF M IS+++R L+
Sbjct: 25 KPVLVGMDRDELIAAMAEAGVPERQRKMRVNQLWHWLYVRGSSDFADMHTISKDLRDKLD 84
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HFS+ PEIV+E+IS DGTRKWL+RFP R G PVE+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 85 AHFSVARPEIVEEQISSDGTRKWLMRFPPRGAGRPVEVETVYIPEEGRGTLCISSQVGCT 144
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTC+FC+TGTQKLVRNLT EEIL Q+L+AR LGDFP + +G ++P+ GRK++NIVMM
Sbjct: 145 LTCTFCHTGTQKLVRNLTPEEILAQLLVARDRLGDFPHKDTPQGAIVPTEGRKVTNIVMM 204
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NVKK+L IASD GL+ S+RRITLSTSG VP I R G EIGVMLAISLHA
Sbjct: 205 GMGEPLYNFENVKKALLIASDGDGLALSRRRITLSTSGVVPEITRTGTEIGVMLAISLHA 264
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA L+++
Sbjct: 265 VRDELRDELVPINKKYPLKQLLDACRAYPGLSNARRITFEYVMLKGVNDSLSDAKELVRL 324
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGIPAKINLIPFNPWPG Y CSD I TF++ I +GY+SPIRTPRG DILAACGQL
Sbjct: 325 LKGIPAKINLIPFNPWPGSAYECSDWDTIETFADFINANGYASPIRTPRGRDILAACGQL 384
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 385 KSESERMRKTERLALEAMMIAG 406
>gi|62289063|ref|YP_220856.1| hypothetical protein BruAb1_0077 [Brucella abortus bv. 1 str.
9-941]
gi|82699000|ref|YP_413574.1| hypothetical protein BAB1_0074 [Brucella melitensis biovar Abortus
2308]
gi|189023336|ref|YP_001934104.1| hypothetical protein BAbS19_I00700 [Brucella abortus S19]
gi|237814550|ref|ZP_04593548.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A]
gi|254690389|ref|ZP_05153643.1| hypothetical protein Babob68_09499 [Brucella abortus bv. 6 str.
870]
gi|254696506|ref|ZP_05158334.1| hypothetical protein Babob28_02005 [Brucella abortus bv. 2 str.
86/8/59]
gi|254731419|ref|ZP_05189997.1| hypothetical protein Babob42_09524 [Brucella abortus bv. 4 str.
292]
gi|256258643|ref|ZP_05464179.1| hypothetical protein Babob9C_15111 [Brucella abortus bv. 9 str.
C68]
gi|260546356|ref|ZP_05822096.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
NCTC 8038]
gi|260755934|ref|ZP_05868282.1| radical SAM protein [Brucella abortus bv. 6 str. 870]
gi|260759158|ref|ZP_05871506.1| radical SAM protein [Brucella abortus bv. 4 str. 292]
gi|260760882|ref|ZP_05873225.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260884958|ref|ZP_05896572.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 9 str. C68]
gi|297247480|ref|ZP_06931198.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196]
gi|75497518|sp|Q57FT9|RLMN_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123740915|sp|Q2YNV3|RLMN_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807157|sp|B2S7X6|RLMN_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|62195195|gb|AAX73495.1| conserved hypothetical protein TIGR00048 [Brucella abortus bv. 1
str. 9-941]
gi|82615101|emb|CAJ10030.1| Cytochrome c heme-binding site:Conserved hypothetical protein
48:Radical SAM [Brucella melitensis biovar Abortus 2308]
gi|189018908|gb|ACD71630.1| Conserved hypothetical protein 48 [Brucella abortus S19]
gi|237789387|gb|EEP63597.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A]
gi|260096463|gb|EEW80339.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
NCTC 8038]
gi|260669476|gb|EEX56416.1| radical SAM protein [Brucella abortus bv. 4 str. 292]
gi|260671314|gb|EEX58135.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260676042|gb|EEX62863.1| radical SAM protein [Brucella abortus bv. 6 str. 870]
gi|260874486|gb|EEX81555.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 9 str. C68]
gi|297174649|gb|EFH33996.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196]
Length = 411
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SK RITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408
>gi|190893778|ref|YP_001980320.1| hypothetical protein RHECIAT_CH0004213 [Rhizobium etli CIAT 652]
gi|254807196|sp|B3PQY8|RLMN_RHIE6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|190699057|gb|ACE93142.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 409
Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats.
Identities = 255/382 (66%), Positives = 311/382 (81%), Gaps = 3/382 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG+ R+E+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L
Sbjct: 22 EKPSLIGLSRQEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK
Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ
Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381
Query: 365 LKSLSKRIPKVPR---QEMQIT 383
LKS S+R+ K R + M I
Sbjct: 382 LKSESERMRKTERLAFEAMMIA 403
>gi|241206731|ref|YP_002977827.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860621|gb|ACS58288.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 409
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 255/383 (66%), Positives = 312/383 (81%), Gaps = 3/383 (0%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K SLIG+ REE+ AL + G+ ++ ++MR SQ+W WIYVRG+ DF M+++++++R +
Sbjct: 21 VEKPSLIGLSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREM 80
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVG
Sbjct: 81 LKQHFTIERPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCLSSQVG 140
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIV
Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAISL
Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS DA LI
Sbjct: 261 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG
Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380
Query: 364 QLKSLSKRIPKVPR---QEMQIT 383
QLKS S+R+ K R + M I
Sbjct: 381 QLKSESERMRKTDRLAFEAMMIA 403
>gi|222087496|ref|YP_002546033.1| hypothetical protein Arad_4378 [Agrobacterium radiobacter K84]
gi|254807146|sp|B9JCI9|RLMN_AGRRK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|221724944|gb|ACM28100.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 411
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 257/381 (67%), Positives = 309/381 (81%), Gaps = 3/381 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ REE+ AL + G+ + V+MR SQ+W WIYVRG+ DF M+++S+++R +L
Sbjct: 26 KPSLIGLTREEMGAALKEKGVADKQVKMRVSQLWNWIYVRGVSDFDAMANVSKDMREMLK 85
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HF+I PEIV+E++S DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLCVSSQVGCS
Sbjct: 86 AHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGCS 145
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SN+VMM
Sbjct: 146 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNMVMM 205
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF++VK +L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 206 GMGEPLYNFESVKTALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 265
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V +DLR++LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA LI++
Sbjct: 266 VRDDLRDMLVPINKKYPLKELMDACRAYPGLSNARRITFEYVMLKGVNDSLEDAKGLIQL 325
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGIP+KINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQL
Sbjct: 326 LKGIPSKINLIPFNPWPGTNYQCSDWEQIEKFADFINAAGYASPIRTPRGRDILAACGQL 385
Query: 366 KSLSKRIPKVPR---QEMQIT 383
KS S+R+ K R + M I
Sbjct: 386 KSDSERMRKTERLAFEAMMIA 406
>gi|294851482|ref|ZP_06792155.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026]
gi|294820071|gb|EFG37070.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026]
Length = 411
Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats.
Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ A + G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMATARIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVPR---QEMQITG 384
KS S+R+ K R + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408
>gi|260429104|ref|ZP_05783081.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45]
gi|260419727|gb|EEX12980.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45]
Length = 398
Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats.
Identities = 207/379 (54%), Positives = 278/379 (73%), Gaps = 8/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +++G+ R+ L AL+++G P++ +MR +Q+W+WIY G+RDF M++++++ R L
Sbjct: 23 KLNIVGLTRDALRAALIEMGTPEKQAKMRVNQVWQWIYHWGVRDFSVMTNLAKDYRAKLE 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HF I PEIV +++S DGTRK+L+R G E+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 83 AHFEIALPEIVSKQVSADGTRKYLVRI-----AGGHEVETVYIPEEGRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQVMLARDDLDEWPAPGTGTGEDGP---RLLSNIVLM 194
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ I D G++ S+RRITLSTSG VP IAR EEIG ++A+S HA
Sbjct: 195 GMGEPLYNFDNVRDAMKIVMDGEGIALSRRRITLSTSGVVPEIARCAEEIGCLMAVSFHA 254
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS DA L+ +
Sbjct: 255 TTDEVRNRLVPINKRWNIEELLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGIPAKINLIPFN WPG Y SD + I F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IKGIPAKINLIPFNEWPGAPYERSDWERIERFADIVHKAGYASPIRTPRGEDIMAACGQL 374
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K Q TG
Sbjct: 375 KSATERARKSRAQIAAETG 393
>gi|254472235|ref|ZP_05085635.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062]
gi|211958518|gb|EEA93718.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062]
Length = 420
Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats.
Identities = 247/381 (64%), Positives = 305/381 (80%), Gaps = 2/381 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG+ REEL AL +G+P+R +RMR +Q+W W+YVRGI DF MS++S+++R L
Sbjct: 34 EKPSLIGLSREELGNALAAVGVPERQIRMRVNQLWHWLYVRGISDFSKMSNVSKDLRTKL 93
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F+I PEIV E+IS DGTRKWL RFP+R G PVE+ETVYIPE+ RGTLC+SSQVGC
Sbjct: 94 DFAFTIARPEIVTEQISVDGTRKWLFRFPSRGAGKPVEVETVYIPEEDRGTLCISSQVGC 153
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182
+LTC+FC+TGTQK+VRNLTAEEIL Q++LA+ L DFP + EG + S R+I+NI
Sbjct: 154 TLTCTFCHTGTQKMVRNLTAEEILAQLMLAKDRLNDFPDADAPEGGLDASTSNRRRITNI 213
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG P IAR G+EIG MLAIS
Sbjct: 214 VMMGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVTPEIARTGDEIGCMLAIS 273
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV+++LRN+LVPIN+KY LE L+ ACR YPGLSNA+RITFEYVMLKG+NDS DA L
Sbjct: 274 LHAVNDELRNVLVPINKKYNLETLLQACRDYPGLSNAKRITFEYVMLKGVNDSLEDAKKL 333
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++LKGIPAKINL+PFNPWPG Y CSD + I F++ + R+GY+SPIRTPRG DI AAC
Sbjct: 334 VQLLKGIPAKINLLPFNPWPGSPYECSDWEQIEEFADVVNRAGYASPIRTPRGRDIFAAC 393
Query: 363 GQLKSLSKRIPKVPRQEMQIT 383
GQLKS S+R+ K R+ ++
Sbjct: 394 GQLKSASERLRKSEREALEKA 414
>gi|86139440|ref|ZP_01058009.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193]
gi|85823943|gb|EAQ44149.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193]
Length = 395
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 203/379 (53%), Positives = 271/379 (71%), Gaps = 9/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+GM R+ + +AL+ IG+P++ +MR QIW+WIY G RDF M+++S+ +R L
Sbjct: 23 KTNLVGMTRDAMRQALVGIGVPEKQAKMRVGQIWQWIYQWGKRDFSEMTNLSKALRAQLE 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V +++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+
Sbjct: 83 EGFEIAIPEVVSKQVSEDGTRKYLVRI-----AGGHEVEVVYIPETDRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P G P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPVP----GTRNPDEARLLSNIVLM 193
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG +LA+S HA
Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAVSFHA 253
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML +NDS DA L+K+
Sbjct: 254 TTDEVRDKLVPINKRWNIEALLEALRAYPRLANSERITFEYVMLDHVNDSKEDAHRLVKL 313
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++GIPAKINLIPFN WPG Y S I F++ I +GY+SPIR PRG DI+AACGQL
Sbjct: 314 IEGIPAKINLIPFNEWPGSPYQRSSNNRIHAFADIIHDAGYASPIRKPRGEDIMAACGQL 373
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K +Q G
Sbjct: 374 KSATERARKSRKQIEAEAG 392
>gi|115522068|ref|YP_778979.1| radical SAM protein [Rhodopseudomonas palustris BisA53]
gi|122298191|sp|Q07VN5|RLMN_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|115516015|gb|ABJ03999.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris BisA53]
Length = 403
Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats.
Identities = 231/377 (61%), Positives = 279/377 (74%), Gaps = 2/377 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R EL E L IG+ +MR Q+W WIYVRG DF M+ IS+E+R L
Sbjct: 22 KPSLIGLSRPELMERLGGIGVAAAQRKMRAQQLWHWIYVRGATDFAQMTSISKELRAQLA 81
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGC 124
+HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC
Sbjct: 82 EHFTVDRPEVVTEQISNDGTRKWLLRLPSGQAGERAHEVECVYIPETDRGTLCVSSQVGC 141
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQKLVRNLTA EI+ QV++A+ LGD+P R I+N+VM
Sbjct: 142 TLNCSFCHTGTQKLVRNLTAGEIVGQVMVAKDRLGDWPMAVAST-QDAGENNRLITNVVM 200
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 201 MGMGEPLYNFEAVRDALLIVSDNEGIGLSRRRITLSTSGVVPNIFRTGDEIGVMLAISLH 260
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LRN LVP+N+KYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K
Sbjct: 261 AVRDELRNELVPLNKKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 320
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+PAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGVPAKINLIPFNPWPGSAYQCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 380
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 381 LKSETEKLSARERDALR 397
>gi|163738104|ref|ZP_02145520.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis
BS107]
gi|161388720|gb|EDQ13073.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis
BS107]
Length = 394
Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats.
Identities = 202/379 (53%), Positives = 272/379 (71%), Gaps = 10/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R++L E L+ G P++ +MR QIW+WIY G RDF M+++++ R L+
Sbjct: 23 KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I PE+V +++S DGTRK+L+R G E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83 EHFEIATPEVVSKQVSTDGTRKYLVRI-----AGGHEVEVVYIPEEGRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L ++P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVP-----GAPKDETRLLSNIVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+S HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSFHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS DA L+++
Sbjct: 253 TTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLVEL 312
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGIPAK+NLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 313 IKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACGQL 372
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K +Q G
Sbjct: 373 KSATERARKSRKQIEAEAG 391
>gi|294675798|ref|YP_003576413.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
gi|294474618|gb|ADE84006.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
Length = 393
Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats.
Identities = 204/379 (53%), Positives = 281/379 (74%), Gaps = 10/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R++L +AL+ G P++ +MR Q+W+WIY G+RDF M++++++ R LL+
Sbjct: 24 KVNLVGLTRDQLRDALIAAGTPEKQAKMRVGQVWQWIYHWGVRDFGAMTNLAKDYRALLD 83
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I PE+V ++S DGTRK+LLR G E+E VYIPE++RGTLC+SSQVGC+
Sbjct: 84 RHFEIALPEVVTCQVSMDGTRKYLLRI-----AGGHEVEAVYIPEENRGTLCISSQVGCT 138
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + R ISN+V+M
Sbjct: 139 LTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPVPGEP-----KDETRLISNVVLM 193
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV+ ++ + D+ GL+ S+RRITLSTSG VP IAR EEIG +LAIS HA
Sbjct: 194 GMGEPLYNFENVRDAMQVVMDNEGLTLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 253
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+ LVP+N+K+ ++ L+DA R YP LSN+ RITFEYVMLKG+NDS DA L+++
Sbjct: 254 TTDAVRDKLVPVNKKWNIKTLLDALRDYPRLSNSERITFEYVMLKGVNDSDDDARRLVRL 313
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++GIPAKINLIPFN WPG Y SD + I F++ + ++GY++PIRTPRG DI+AACGQL
Sbjct: 314 IQGIPAKINLIPFNEWPGSPYKRSDWERIEAFADIVYKAGYAAPIRTPRGEDIMAACGQL 373
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K + TG
Sbjct: 374 KSATERARKSKAEIDAETG 392
>gi|255261946|ref|ZP_05341288.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62]
gi|255104281|gb|EET46955.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62]
Length = 395
Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats.
Identities = 199/378 (52%), Positives = 271/378 (71%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ + + L++ G P++ +MR QIW+WIYV+G+R F M+++S++ R L +
Sbjct: 23 INLVGLRRDAMRDVLIEHGTPEKQAKMRVGQIWQWIYVKGLRSFDEMTNLSKDYRAKLAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F I PE+V +++S DGTRK+L+R G E+E VYIPE+ RGTLC+SSQVGC+L
Sbjct: 83 NFVIEVPEVVTKQVSEDGTRKYLVRI-----AGGHEVEVVYIPEEGRGTLCISSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLT EI+ QV++AR LG++P E R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTPAEIIGQVMVARDDLGEWP-----EPGTPNDEARLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG MLA+S HA
Sbjct: 193 MGEPLYNFEGVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++D+R+ LVPIN+++ + L+DA R YP +SN+ RITFEYVML G+ND+ DA L++++
Sbjct: 253 TDDVRDKLVPINKRWNIAELLDALRAYPKVSNSERITFEYVMLDGVNDTDEDAHRLVELI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFN WPG Y S I F+ I ++GY+SPIR PRG DI+AACGQLK
Sbjct: 313 KGIPAKINLIPFNEWPGAPYKRSSNNRIRAFAHIIYKAGYASPIRKPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 373 SATERARKSRKQIEAEAG 390
>gi|222150075|ref|YP_002551032.1| Fe-S-cluster redox protein [Agrobacterium vitis S4]
gi|254807147|sp|B9JU97|RLMN_AGRVS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|221737057|gb|ACM38020.1| Fe-S-cluster redox protein [Agrobacterium vitis S4]
Length = 410
Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats.
Identities = 252/387 (65%), Positives = 308/387 (79%), Gaps = 3/387 (0%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K +LIG REE+ E L +IG+ + VRMR +Q+W WIYVRG+ DF M+++++++
Sbjct: 19 MTGATKPTLIGQTREEMGEMLREIGVADKQVRMRVAQLWNWIYVRGVSDFDQMTNVAKDM 78
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L HF+I PEIV+E++S DGTRKWLLR+P R G PVE+E VYIPE+ RGTLCVSS
Sbjct: 79 REKLKAHFTIARPEIVEEQVSNDGTRKWLLRYPPRGAGRPVEVECVYIPEEGRGTLCVSS 138
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+LTC+FC+TGTQKLVRNLTAEE+L Q+LLAR LGDFP + G ++P+ GRKI+
Sbjct: 139 QVGCTLTCTFCHTGTQKLVRNLTAEEVLSQLLLARDRLGDFPDRDAPVGAMVPNEGRKIT 198
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLA
Sbjct: 199 NMVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLA 258
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHAV ++LR++LVPIN+KYPL+ LI+ACR+YPGLSNARRITFEYVMLK +NDS DA
Sbjct: 259 ISLHAVRDELRDLLVPINKKYPLKDLIEACRNYPGLSNARRITFEYVMLKDVNDSLEDAK 318
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI++LKGIP+KINLIPFNPWPG Y CSD I+ F++ I +GY+SPIRTPRG DILA
Sbjct: 319 GLIQLLKGIPSKINLIPFNPWPGTNYQCSDWDQIMKFADFINSAGYASPIRTPRGRDILA 378
Query: 361 ACGQLKSLSKRIPKVPR---QEMQITG 384
ACGQLKS S+R+ K R + M I G
Sbjct: 379 ACGQLKSESERMRKTERLAYEAMMIVG 405
>gi|163745013|ref|ZP_02152373.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
gi|161381831|gb|EDQ06240.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
Length = 393
Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats.
Identities = 198/378 (52%), Positives = 264/378 (69%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ + + L+ G P++ +MR QIW+WIY G+RDF M+++++ R L +
Sbjct: 23 VNLVGLTRDAMRDVLIANGTPEKQAKMRVGQIWQWIYQWGVRDFDSMTNLAKGYRAELAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I PE+V + S DGTRK+L+R G E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 83 KFVIEVPEVVTRQESEDGTRKYLVRI-----AGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWP-----ETGTRTEEARLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP I R EIG LA+S HA
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIHRTAAEIGCQLAVSFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++RN LVPIN+++ +E L+DA R YP +SN+ RITFEYVMLKG+NDS DA L++++
Sbjct: 253 TDEVRNKLVPINKRWNIEELLDALRAYPKVSNSERITFEYVMLKGVNDSDEDAHRLVELI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFN WPG Y S I F++ + +GY+SP+R PRG DI+AACGQLK
Sbjct: 313 KGIPAKINLIPFNEWPGSPYERSSNNRIRAFADIVYNAGYASPVRKPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 373 SATERARKSRKQIEAEAG 390
>gi|89052760|ref|YP_508211.1| hypothetical protein Jann_0269 [Jannaschia sp. CCS1]
gi|88862309|gb|ABD53186.1| 23S rRNA m(2)A-2503 methyltransferase [Jannaschia sp. CCS1]
Length = 410
Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats.
Identities = 204/378 (53%), Positives = 273/378 (72%), Gaps = 9/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+LIG+ R+ L AL++ G P++ +MRT QIW+W+Y +G+RDF M+++S++ R +L +
Sbjct: 41 VNLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAE 100
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F PE+V ++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+L
Sbjct: 101 TFVADVPEVVSRQVSADGTRKYLVRI-----AGGHEVEVVYIPEVDRGTLCISSQVGCTL 155
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++ G + R +SNIV+MG
Sbjct: 156 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEW----VPTGEGSDAKPRLVSNIVLMG 211
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG LA+S HA
Sbjct: 212 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 271
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++D+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVMLK +NDS DA L++++
Sbjct: 272 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 331
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFN WPG Y SD I F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 332 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 391
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 392 SATERARKSRKQIEAEAG 409
>gi|205829857|sp|Q28VS6|RLMN_JANSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 392
Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats.
Identities = 204/378 (53%), Positives = 273/378 (72%), Gaps = 9/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+LIG+ R+ L AL++ G P++ +MRT QIW+W+Y +G+RDF M+++S++ R +L +
Sbjct: 23 VNLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F PE+V ++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+L
Sbjct: 83 TFVADVPEVVSRQVSADGTRKYLVRI-----AGGHEVEVVYIPEVDRGTLCISSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++ G + R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEW----VPTGEGSDAKPRLVSNIVLMG 193
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG LA+S HA
Sbjct: 194 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 253
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++D+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVMLK +NDS DA L++++
Sbjct: 254 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 313
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFN WPG Y SD I F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 374 SATERARKSRKQIEAEAG 391
>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
gi|254040797|gb|ACT57593.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 384
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV
Sbjct: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS
Sbjct: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS
Sbjct: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA
Sbjct: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL
Sbjct: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA
Sbjct: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQLKSLSKRIPKVPRQEMQITG
Sbjct: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
>gi|163867325|ref|YP_001608519.1| hypothetical protein Btr_0020 [Bartonella tribocorum CIP 105476]
gi|205829668|sp|A9IL44|RLMN_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|161016966|emb|CAK00524.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 408
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 250/379 (65%), Positives = 304/379 (80%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K SLIG+ ++E+ +AL +G+P+R RMR Q+W W+YVRG+ +F M +IS+ ++ L
Sbjct: 27 SKLSLIGLSQDEIVQALKTVGVPERQTRMRARQLWHWLYVRGVSNFDEMLNISKVMQETL 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87 KHHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRK++NIVM
Sbjct: 147 TLTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVEGRKVTNIVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N++ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 207 MGMGEPLYNYEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + +R++LVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK INDS DA LI+
Sbjct: 267 AVHDTVRDMLVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIQ 326
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIRTPRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRTPRGRDILAACGQ 386
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+R+ K R +++
Sbjct: 387 LKSASERLRKSERLKLENA 405
>gi|163742501|ref|ZP_02149887.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis
2.10]
gi|161384086|gb|EDQ08469.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis
2.10]
Length = 394
Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats.
Identities = 201/379 (53%), Positives = 272/379 (71%), Gaps = 10/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R++L E L+ G P++ +MR QIW+WIY G RDF M+++++ R L+
Sbjct: 23 KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I PE++ +++S DGTRK+L+R G E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83 EHFEIATPEVMSKQVSTDGTRKYLVRI-----AGGHEVEVVYIPEEGRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L ++P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVP-----GAPKDETRLLSNIVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+S HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSFHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS DA L+++
Sbjct: 253 TTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLVEL 312
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGIPAK+NLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 313 IKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACGQL 372
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K +Q G
Sbjct: 373 KSATERARKSRKQIEAEAG 391
>gi|126727284|ref|ZP_01743120.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium
HTCC2150]
gi|126703493|gb|EBA02590.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium
HTCC2150]
Length = 392
Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats.
Identities = 204/379 (53%), Positives = 271/379 (71%), Gaps = 9/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R+ + +AL+ G+P++ +MRT QIW WIY +G+R F M+++S+ R L
Sbjct: 22 KINLVGLTRDGMRDALIAAGLPEKQGKMRTGQIWAWIYEKGVRTFDVMTNLSKGYRAELA 81
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V +IS DGTRK+L+R G E+E VYIPEK RGTLC+SSQVGC+
Sbjct: 82 ESFEIAVPEVVTRQISEDGTRKYLVRI-----AGGHEVEVVYIPEKDRGTLCISSQVGCT 136
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLGEWPELAQSPNVEA----RLLSNIVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF++V+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG MLA+S HA
Sbjct: 193 GMGEPLYNFESVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTADEIGCMLAVSFHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++D+R+ LVPIN+K+ +E L+DA R YP SN+ RITFEYVML G+NDS DA L+++
Sbjct: 253 TTDDVRDKLVPINKKWNIEALLDALRAYPKASNSERITFEYVMLNGVNDSDEDAHRLVEL 312
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGIPAKINLIPFN WPG Y S I F++ + +GYSSP+R PRG DI+AACGQL
Sbjct: 313 IKGIPAKINLIPFNEWPGAPYQRSSNNRIRAFADIVFNAGYSSPVRRPRGEDIMAACGQL 372
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K ++ G
Sbjct: 373 KSETERARKSRKEIAAEAG 391
>gi|84683986|ref|ZP_01011888.1| radical SAM superfamily protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84667739|gb|EAQ14207.1| radical SAM superfamily protein [Rhodobacterales bacterium
HTCC2654]
Length = 394
Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats.
Identities = 209/379 (55%), Positives = 273/379 (72%), Gaps = 9/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R+ L +AL+ G P++ +MR Q+W+WIY +G+RDF M+++S++ R LL+
Sbjct: 24 KPNLVGLTRDGLRDALIAAGTPEKQAKMRVGQVWQWIYQKGVRDFADMTNLSKDYRALLD 83
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF I PE+V +++S DGTRK+L+R G E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 84 QHFEIRVPELVSKQVSTDGTRKYLVRI-----AGGHEVEVVYIPEEDRGTLCVSSQVGCT 138
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L D+ G + R +SNIV+M
Sbjct: 139 LTCSFCHTGTQKLVRNLTAGEIVGQIMMARDDLEDW----VPAGKGMGERPRLVSNIVLM 194
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFD V+ ++ IA D G+S S+RRITLSTSG VP IAR G EIG MLAIS HA
Sbjct: 195 GMGEPLYNFDAVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARAGAEIGCMLAISFHA 254
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R+ LVPIN+K+ +E L+ A + YP LSN+ RITFEYVML G+NDS DA LIK+
Sbjct: 255 TDDETRDKLVPINKKWNIEKLLAALKEYPKLSNSERITFEYVMLDGVNDSDEDARRLIKL 314
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++GIPAKINLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IEGIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRTPRGEDIMAACGQL 374
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K + + G
Sbjct: 375 KSETERARKSKAEIAREAG 393
>gi|304392673|ref|ZP_07374613.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130]
gi|303295303|gb|EFL89663.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130]
Length = 423
Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats.
Identities = 238/386 (61%), Positives = 300/386 (77%), Gaps = 7/386 (1%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIGM R ++ AL++ GIPQ+ RMR SQ+W+WIY G DF M++I++++R L
Sbjct: 26 EKPSLIGMDRADMAAALIEAGIPQKQARMRASQLWQWIYWYGHTDFAAMTNIAKDLRAKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ PE+V+E IS DGTRKWL RFPAR G PVE+ETVYIPE RGTLC+SSQVGC
Sbjct: 86 ADNFTLERPELVEELISTDGTRKWLFRFPARGAGAPVEVETVYIPESDRGTLCISSQVGC 145
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-------EDIEGMVIPSVGR 177
+LTC+FC+TGTQKLVRNLTAEEIL+Q+++AR LGDFP ++ E IP R
Sbjct: 146 TLTCTFCHTGTQKLVRNLTAEEILMQLMVARDRLGDFPDKPPVKAAAKNEEEAFIPDGDR 205
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
K+SNIVMMGMGEPL NF++VKK+L IASD+ GLS SKRRITLSTSG VP I R G+EIG
Sbjct: 206 KVSNIVMMGMGEPLYNFEHVKKALLIASDNEGLSLSKRRITLSTSGVVPGIERTGDEIGC 265
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLHA +++LR++LVPIN+KYP+ L+DACR+YPG SN++RITFEYVML G+NDS
Sbjct: 266 GLAISLHATNDELRDVLVPINKKYPIAKLLDACRNYPGASNSKRITFEYVMLDGVNDSLA 325
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L+++LKGIPAKINLIPFNPWPG +Y CS + I F+E + +GY+SP+RTPRG D
Sbjct: 326 DAKELVRLLKGIPAKINLIPFNPWPGSQYECSSWEKIEAFAEFVNANGYASPVRTPRGRD 385
Query: 358 ILAACGQLKSLSKRIPKVPRQEMQIT 383
I AACGQLKS S+R+ K R+ +
Sbjct: 386 IFAACGQLKSESERMRKKDRETAEFA 411
>gi|149201312|ref|ZP_01878287.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035]
gi|149145645|gb|EDM33671.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035]
Length = 392
Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats.
Identities = 205/378 (54%), Positives = 273/378 (72%), Gaps = 9/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ L E L+ G P++ +MR +QIW+WIY G+RDF M+++++ R L +
Sbjct: 23 INLVGLTRDALREVLIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F + PE+V +++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+L
Sbjct: 83 NFVVTIPEVVSKQVSADGTRKYLVRI-----AGGHEVEVVYIPETDRGTLCISSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P + G R ISNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPKPGEPAG----ERPRLISNIVLMG 193
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG +LA+S HA
Sbjct: 194 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCLLAVSFHAT 253
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R+ LVPIN+++ + L+D R YP LSN+ RITFEYVMLKG+NDS DA L++++
Sbjct: 254 TDEVRDTLVPINKRWNIATLLDTLREYPRLSNSERITFEYVMLKGVNDSDADARRLVQLI 313
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFN WPG Y SD + I F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 KGIPAKINLIPFNEWPGSPYQRSDWERIERFADIIYKAGYASPIRTPRGEDIMAACGQLK 373
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K Q G
Sbjct: 374 SATERSRKSRAQIEAEAG 391
>gi|209883455|ref|YP_002287312.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
gi|209871651|gb|ACI91447.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
Length = 404
Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats.
Identities = 228/377 (60%), Positives = 286/377 (75%), Gaps = 6/377 (1%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG+ R+EL L ++G+ + +MR Q+W W+YVRG R F+ MS++S+++R L
Sbjct: 28 EKPSLIGLSRDELMARLGELGVADKQRKMRAQQLWHWMYVRGARSFEEMSNVSKDMRAQL 87
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF++ PE+V E++S DGTRKWLLR P +G E+E VYIPE RGTLCVSSQVGC
Sbjct: 88 AAHFTVDRPEVVAEQVSNDGTRKWLLRMPGDGVGRAHEVECVYIPETDRGTLCVSSQVGC 147
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++N+VM
Sbjct: 148 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRET------PNGNRLVTNVVM 201
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I SD G+ S+RRITLSTSG VPNIAR+GEE GVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVRDALKIMSDGEGIGLSRRRITLSTSGVVPNIARIGEETGVMLAISLH 261
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LRN LVP+NRKYP+ L+DACR+YPG SNARRITFEYVMLKG+NDS DA L+K
Sbjct: 262 AVRDELRNELVPLNRKYPIAQLLDACRNYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 321
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 322 LLKGIPAKINLIPFNPWPGSVYECSDWEQIEQFSEYVFNAGYSSPVRTPRGRDILAACGQ 381
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 382 LKSETEKLSVRERDALR 398
>gi|319403510|emb|CBI77089.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 409
Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats.
Identities = 250/377 (66%), Positives = 302/377 (80%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K LIG+ +E+ +AL IG+P+ +MR QIW W+YVRG+ F M +IS+ +R +L
Sbjct: 27 SKLPLIGLSHDEIAQALQAIGVPEHQTQMRVRQIWHWLYVRGVSHFDEMLNISKPMREML 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+HFSI PEIV E+IS DGTRKWLLRFPA G PVEIETVYIPE++RGTLC+SSQVGC
Sbjct: 87 KEHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEIETVYIPEEARGTLCISSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP + +G +IP GRKI+N+VM
Sbjct: 147 TLTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDGAIIPIEGRKITNVVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG +P I R G+EIGVMLAISLH
Sbjct: 207 MGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA LI+
Sbjct: 267 AVHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDARKLIQ 326
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIINKAGYASPIRMPRGRDILAACGQ 386
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS SKR+ K R ++
Sbjct: 387 LKSASKRLAKSERIRLE 403
>gi|319898214|ref|YP_004158307.1| Fe-S containing enzyme [Bartonella clarridgeiae 73]
gi|319402178|emb|CBI75709.1| putative Fe-S containing enzyme [Bartonella clarridgeiae 73]
Length = 411
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 246/377 (65%), Positives = 299/377 (79%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K SLIG+ R+E+ +AL IG+P+ MR Q+W W+YVRG+ +F M +IS+ +R +
Sbjct: 27 SKLSLIGLSRDEMTQALQVIGVPEHQKGMRVRQLWHWLYVRGVSNFDEMLNISKPMREMF 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HFSI P+IV E+IS DGTRKWLL+FPA PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 87 KDHFSIARPKIVAEQISQDGTRKWLLQFPASGTERPVEIEMVYIPEERRGTLCISSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP +G +IP GRKI+NIVM
Sbjct: 147 TLTCSFCHTGTQKLVRNLTTEEILVQLLVARDCLGDFPDKNIPDGAIIPIEGRKITNIVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG +P I R G+EIGVMLAISLH
Sbjct: 207 MGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + LRNILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA L++
Sbjct: 267 AVHDKLRNILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLGDAKRLVQ 326
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIVNKAGYASPIRMPRGRDILAACGQ 386
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS S+R+ K R E++
Sbjct: 387 LKSASERLRKSERMELE 403
>gi|119385232|ref|YP_916288.1| radical SAM protein [Paracoccus denitrificans PD1222]
gi|205829795|sp|A1B4Z8|RLMN_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|119374999|gb|ABL70592.1| 23S rRNA m(2)A-2503 methyltransferase [Paracoccus denitrificans
PD1222]
Length = 391
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 205/369 (55%), Positives = 274/369 (74%), Gaps = 10/369 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ RE+L EAL++ G P+R RMR QIW+WIY G+RDF M++++++ R LL +
Sbjct: 23 RNLVGLTREQLHEALIQAGTPERQARMRVGQIWQWIYHWGVRDFAQMTNLAKDYRALLAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F I PEIV +IS DGTRK+LLR G E+ETVYIPE++RGTLC+SSQVGC+L
Sbjct: 83 NFEIALPEIVTRQISADGTRKYLLRIS-----GGHEVETVYIPEENRGTLCISSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P R +SN+V+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPKP-----GAPKDETRLVSNVVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV+ ++ + D G+S S+RRITLSTSG VP IA+ EEIG +LA+S HA
Sbjct: 193 MGEPLYNFDNVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIAKTAEEIGCLLAVSFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++ R+ LVP+NRK+ +E L++A R YP LSN+ RITFEYVML G+NDS DA L++++
Sbjct: 253 TDETRDKLVPVNRKWNIETLLNALREYPRLSNSERITFEYVMLDGVNDSDEDARRLVRLI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAK+NLIPFN WPG Y S + I F++ + ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 313 RGIPAKVNLIPFNEWPGSPYRRSGWERIEAFADIVHKAGYASPIRTPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKV 375
S ++R K
Sbjct: 373 SATERGRKT 381
>gi|240849701|ref|YP_002971089.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup]
gi|240266824|gb|ACS50412.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup]
Length = 408
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 251/379 (66%), Positives = 301/379 (79%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K SLIG+ ++E+ +AL +G+P+ RMR Q+W W+YVRG+ +F M +IS+ ++ L
Sbjct: 27 SKLSLIGLSQDEMVQALKTVGVPEHQTRMRVRQLWHWLYVRGVSNFDEMLNISKAMQETL 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87 KCHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVM
Sbjct: 147 TLTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPIEGRKITNIVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 207 MGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + LR++LVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK INDS DA LIK
Sbjct: 267 AVHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIK 326
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQ 386
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+R+ K R ++
Sbjct: 387 LKSASERLRKSERLRLENA 405
>gi|163733192|ref|ZP_02140636.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149]
gi|161393727|gb|EDQ18052.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149]
Length = 394
Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 202/378 (53%), Positives = 267/378 (70%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R + + L+ G P++ +MR QIW+WIY G+RDF M+++S+ R L +
Sbjct: 23 VNLVGLTRAAMRDVLIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAELKE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + PE+V ++S DGTRK+L+R G E+E VYIPE RGTLCVSSQVGC+L
Sbjct: 83 KFVVEVPEVVTRQVSEDGTRKYLVRI-----AGGHEVEVVYIPEDGRGTLCVSSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVIIARDDLGEWP-----EIGAPKDETRLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EIG LAIS HA
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAISFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS DA L+K++
Sbjct: 253 TDDVRDKLVPINKRWNIEVLLEALRVYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 373 SATERARKSRKQIAAEAG 390
>gi|110677600|ref|YP_680607.1| hypothetical protein RD1_0192 [Roseobacter denitrificans OCh 114]
gi|123066012|sp|Q16DM2|RLMN_ROSDO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|109453716|gb|ABG29921.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 394
Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 202/378 (53%), Positives = 269/378 (71%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R + +AL+ G P++ +MR QIW+WIY G+RDF M+++S+ R L +
Sbjct: 23 VNLVGLTRAAMRDALIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAQLKE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + PE+V ++S DGTRK+L+R G E+E VYIP++ RGTLCVSSQVGC+L
Sbjct: 83 KFVVEVPEVVTRQVSEDGTRKYLVRI-----AGGHEVEVVYIPDEGRGTLCVSSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP-----EIGAPKDETRLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EIG LA+S HA
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAVSFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS DA L+K++
Sbjct: 253 TDDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 313 DGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q TG
Sbjct: 373 SATERARKSRKQIAAETG 390
>gi|205829897|sp|Q6NCS3|RLMN_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 399
Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 228/377 (60%), Positives = 284/377 (75%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R +L
Sbjct: 23 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
+HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC
Sbjct: 83 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 196
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 377 LKSETEKLSVRERNALR 393
>gi|310817045|ref|YP_003965009.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
vulgare Y25]
gi|308755780|gb|ADO43709.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
vulgare Y25]
Length = 409
Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats.
Identities = 198/375 (52%), Positives = 272/375 (72%), Gaps = 8/375 (2%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L+GM R+++ +A++ IG+P++ +MR Q+W+WIYV G+RDF M+++++++R L +
Sbjct: 38 NLVGMTRDQMRQAMIDIGVPEKQAKMRMGQLWQWIYVWGVRDFALMTNLAKDLRAKLAET 97
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + PE+V ++S DGTRK+L+R G E+E VYIPE RGTLCVSSQVGC+LT
Sbjct: 98 YVLAVPEVVTRQVSEDGTRKYLVRI-----AGGHEVEVVYIPETDRGTLCVSSQVGCTLT 152
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC+TGTQKLVRNLT EI+ QV++AR LG++P + P R++SNIV+MGM
Sbjct: 153 CSFCHTGTQKLVRNLTTAEIVGQVMVARDDLGEWPHPGQDVSELGP---RRLSNIVLMGM 209
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL NF+NV+ ++ I D G+ S+RRITLSTSG VP IAR EIG LA+S HA +
Sbjct: 210 GEPLYNFENVRDAMKICMDPEGIQLSRRRITLSTSGIVPEIARTAVEIGCQLAVSFHATT 269
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+D+RN+LVP+NRK+ +E L+ A R YP LSN+ RITFEYVML+G+NDS DA L+++++
Sbjct: 270 DDVRNVLVPVNRKWNIEALLTALREYPALSNSERITFEYVMLRGVNDSDDDARRLVELIR 329
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
GIPAKINLIPFN WPG Y S + I F + + R+GY+SP+R PRG DI+AACGQLKS
Sbjct: 330 GIPAKINLIPFNEWPGSPYQRSTKARIEAFGDIVNRAGYASPVRRPRGEDIMAACGQLKS 389
Query: 368 LSKRIPKVPRQEMQI 382
++R K Q
Sbjct: 390 ATERARKSRAQIAAE 404
>gi|39933473|ref|NP_945749.1| hypothetical protein RPA0396 [Rhodopseudomonas palustris CGA009]
gi|39647319|emb|CAE25840.1| Cfr family protein [Rhodopseudomonas palustris CGA009]
Length = 424
Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats.
Identities = 228/377 (60%), Positives = 284/377 (75%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R +L
Sbjct: 48 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 107
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
+HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC
Sbjct: 108 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 167
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM
Sbjct: 168 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 221
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 222 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 281
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++
Sbjct: 282 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 341
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 342 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 401
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 402 LKSETEKLSVRERNALR 418
>gi|192288832|ref|YP_001989437.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
gi|254807199|sp|B3Q9D7|RLMN_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|192282581|gb|ACE98961.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
Length = 399
Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats.
Identities = 228/377 (60%), Positives = 283/377 (75%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R L
Sbjct: 23 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
+HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC
Sbjct: 83 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 196
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 377 LKSETEKLSVRERNALR 393
>gi|315122584|ref|YP_004063073.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495986|gb|ADR52585.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 389
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 328/383 (85%), Positives = 359/383 (93%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +KKESLIGM REE+EE+LLKIG+P VRMRTSQIWKWIYVRG+RDF MSDIS+E+
Sbjct: 1 MNIVKKESLIGMTREEIEESLLKIGVPPIQVRMRTSQIWKWIYVRGVRDFHFMSDISKEI 60
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LL+QHF+I+YPEIVDEKISCDGTRKWLLRFPARCIG PV+IETVYIPEKSRGTLCVSS
Sbjct: 61 RCLLDQHFAIVYPEIVDEKISCDGTRKWLLRFPARCIGDPVDIETVYIPEKSRGTLCVSS 120
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSLTCSFCYTGTQ+LVRNLT EEILLQ+LL RSLLGDFPGCED+ MV+P VGRK+S
Sbjct: 121 QVGCSLTCSFCYTGTQQLVRNLTVEEILLQILLVRSLLGDFPGCEDMTEMVVPLVGRKVS 180
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIVMMGMGEPLCNFDNVKK+L IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA
Sbjct: 181 NIVMMGMGEPLCNFDNVKKALLIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHAV NDLRNILVPIN+KYPLEML+DACR+YPGLSN+RRITFEYVMLKGINDSPRDA+
Sbjct: 241 ISLHAVKNDLRNILVPINKKYPLEMLMDACRNYPGLSNSRRITFEYVMLKGINDSPRDAI 300
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LIK+LKGIPAKINLIPFNPWPGC+YLCSDQKDI FSE +K+SGYSSPIRTPRGLDI A
Sbjct: 301 ELIKLLKGIPAKINLIPFNPWPGCDYLCSDQKDIEIFSEYVKKSGYSSPIRTPRGLDIFA 360
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQLKSLSKR+P++ ++ QIT
Sbjct: 361 ACGQLKSLSKRVPRISSKQAQIT 383
>gi|126733857|ref|ZP_01749604.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
gi|126716723|gb|EBA13587.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
Length = 391
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 206/378 (54%), Positives = 272/378 (71%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++LIG+ R+++ +AL+ +G ++ +MR QIW+WIY G+RDF M+++S++ R +L +
Sbjct: 23 QNLIGLSRDQMRDALIAVGTAEKQAKMRVGQIWQWIYHWGVRDFSAMTNLSKDYRAMLAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I PE+V ++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+L
Sbjct: 83 TFVIALPEVVTRQVSDDGTRKYLVRI-----AGGHEVEVVYIPETDRGTLCISSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMIARDDLDEWP-----EPGTRTEDTRLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG LA+S HA
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCQLAVSFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ND+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVML G+NDS DA LIK++
Sbjct: 253 TNDVRDRLVPINKRWPISDLLDALREYPKVSNSERITFEYVMLDGVNDSDEDAHRLIKLI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAKINLIPFN WPG Y S I FSE I ++GY+SP+R PRG DI+AACGQLK
Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSNNRIRKFSEIIYQAGYASPVRKPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K Q Q G
Sbjct: 373 SATERARKSKAQIAQEAG 390
>gi|114762064|ref|ZP_01441532.1| radical SAM superfamily protein [Pelagibaca bermudensis HTCC2601]
gi|114545088|gb|EAU48091.1| radical SAM superfamily protein [Roseovarius sp. HTCC2601]
Length = 398
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 207/379 (54%), Positives = 279/379 (73%), Gaps = 8/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ RE L AL+++G P++ +MR +QIW+W+Y G+RDF M+++++E R L+
Sbjct: 23 KLNLVGLTREALRAALIEMGTPEKQAKMRVNQIWQWVYHWGVRDFAEMTNLAKEYRAKLD 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HF I+ PEIV + +S DGTRK+L+R G E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83 AHFEILLPEIVSKNVSVDGTRKYLVRI-----AGGHEVEVVYIPEEGRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ Q++LAR L ++P G P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLDEWPEPGTGTGEGGP---RLLSNIVLM 194
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ IA D G++ S+RRITLSTSG VP IA+ +EIG ++A+S HA
Sbjct: 195 GMGEPLYNFDNVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIAKCAKEIGCLMAVSFHA 254
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS DA L+ +
Sbjct: 255 TTDEVRNKLVPINKRWNIETLLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGIPAKINLIPFN WPG Y SD + I F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IKGIPAKINLIPFNEWPGAPYQRSDWERIERFADIVYKAGYASPIRTPRGEDIMAACGQL 374
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K Q TG
Sbjct: 375 KSATERARKSRAQIAAETG 393
>gi|126729978|ref|ZP_01745790.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37]
gi|126709358|gb|EBA08412.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37]
Length = 394
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 207/373 (55%), Positives = 277/373 (74%), Gaps = 8/373 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R L +ALL +G P++ V+MR +Q+W+W+Y G+RDF M++++++ R L+
Sbjct: 22 KINLVGLTRAGLRDALLAMGTPEKQVKMRVNQVWQWVYFWGVRDFDSMTNLAKDYRAKLD 81
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I PEIV +++S DGTRK+L+R G E+ETVYIPE+ RGTLCVSSQVGC+
Sbjct: 82 ATFEIALPEIVSKQVSADGTRKYLVRI-----AGGHEVETVYIPEEDRGTLCVSSQVGCT 136
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ Q++LAR LG++P G P R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLGEWPEPGTGTGEQGP---RLLSNIVLM 193
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ IA D GLS S+RRITLSTSG VP IA+ EEIG ++A+S HA
Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDHEGLSMSRRRITLSTSGVVPEIAKCAEEIGCLMAVSFHA 253
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN LVPIN+++ + L+DA R YP LSN+ RITFEYVMLK +NDS DA L+++
Sbjct: 254 TTDEVRNKLVPINKRWNIATLLDALREYPRLSNSERITFEYVMLKDVNDSDEDARRLVRL 313
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAKINLIPFN WPG Y SD I F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 IAGIPAKINLIPFNEWPGSPYERSDWSRIERFADIVYKAGYASPIRTPRGEDIMAACGQL 373
Query: 366 KSLSKRIPKVPRQ 378
KS ++R K ++
Sbjct: 374 KSATERSRKSRKE 386
>gi|319406423|emb|CBI80063.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 409
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 250/376 (66%), Positives = 300/376 (79%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K LIG+ +E+ +AL IG+P+ +MR Q+W W+YVRGI F M +IS+ +R +L
Sbjct: 28 KLPLIGLSHDEMAQALQAIGVPEHQTQMRVRQLWHWLYVRGISHFDEMLNISKPMREMLK 87
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HFSI PEIV E+IS DGTRKWLLRFPA G PVE+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88 EHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEVETVYIPEEGRGTLCISSQVGCT 147
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP + + +IP GRKI+NIVMM
Sbjct: 148 LTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDSAIIPIEGRKITNIVMM 207
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPRIIRTGKEIGVMLAISLHA 267
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA LI++
Sbjct: 268 VHDALRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDARRLIQL 327
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEHIERFADIINKAGYASPIRVPRGRDILAACGQL 387
Query: 366 KSLSKRIPKVPRQEMQ 381
KS SKR+ K R ++
Sbjct: 388 KSASKRLAKSERMRLE 403
>gi|254486932|ref|ZP_05100137.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
gi|214043801|gb|EEB84439.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
Length = 391
Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 202/377 (53%), Positives = 265/377 (70%), Gaps = 10/377 (2%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L+G+ R+ + E L+ G P++ +MR QIW+WIY G RDF M+++S+ R L +
Sbjct: 24 NLVGLTRDAMREVLIAQGTPEKQAKMRVGQIWQWIYQWGTRDFAEMTNLSKAFRAELAEK 83
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
F I PE+V +++S DGTRK+L+R G E+E VYIPE RGTLCVSSQVGC+LT
Sbjct: 84 FVIEVPEVVTKQVSEDGTRKYLVRI-----AGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC+TGTQKLVRNLTA EI+ QV++AR L ++P I R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWPVP-----GTITEAPRLLSNIVLMGM 193
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+++R+ LVPIN+++ + LI+A R YP +SN+ RITFEYVML G+NDS DA LI++++
Sbjct: 254 DEVRDKLVPINKRWNIAELIEALRSYPKVSNSERITFEYVMLNGVNDSDADAYRLIELIR 313
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
GIPAKINLIPFN WPG Y S I FSE I ++GY+SP+R PRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGAPYTRSSNNRIRAFSEIIYKAGYASPVRKPRGEDIMAACGQLKS 373
Query: 368 LSKRIPKVPRQEMQITG 384
++R K +Q G
Sbjct: 374 ATERARKSRKQIEADAG 390
>gi|260432258|ref|ZP_05786229.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416086|gb|EEX09345.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis
ITI-1157]
Length = 395
Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 203/381 (53%), Positives = 266/381 (69%), Gaps = 12/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R+ L E L++ G P++ +MR +QIW+WIY G+RDF M+++++ R L
Sbjct: 22 KINLVGLTRDRLREVLIEHGTPEKQAKMRVNQIWQWIYQWGVRDFDQMTNLAKAYRAQLA 81
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I PE+V +IS DGTRK+L+R G E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 82 EHFVIEIPEVVTRQISSDGTRKYLVRI-----AGGHEVEVVYIPEEDRGTLCISSQVGCT 136
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P + R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPTP-----GAPKNETRLLSNIVLM 191
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS HA
Sbjct: 192 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R++LVPIN+++ +E L+ A YP SN+ RITFEYVML G+NDS DA LI
Sbjct: 252 TTDEVRDVLVPINKRWNIEELLQALASYPNASNSERITFEYVMLDGVNDSDEDAHRLIDH 311
Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG
Sbjct: 312 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAACG 371
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QLKS ++R K RQ G
Sbjct: 372 QLKSATERARKSRRQIEAEAG 392
>gi|77464959|ref|YP_354463.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1]
gi|126460828|ref|YP_001041942.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17029]
gi|221640880|ref|YP_002527142.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131]
gi|332559858|ref|ZP_08414180.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides
WS8N]
gi|123757738|sp|Q3IY22|RLMN_RHOS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829867|sp|A3PFQ4|RLMN_RHOS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807200|sp|B9KQP1|RLMN_RHOSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|77389377|gb|ABA80562.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1]
gi|126102492|gb|ABN75170.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17029]
gi|221161661|gb|ACM02641.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131]
gi|332277570|gb|EGJ22885.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides
WS8N]
Length = 392
Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats.
Identities = 206/378 (54%), Positives = 275/378 (72%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++G+ REEL AL+ G P+R +MR Q+W+W+Y G+RDF M++++++ R LL +
Sbjct: 24 VNIVGLTREELLAALVAAGTPERQAKMRAGQVWQWVYHWGVRDFAQMTNLAKDYRALLAE 83
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF+I+ PE+V +IS DGTRK+L+R G E+ETVYIPE+ RGTLCVSSQVGC+L
Sbjct: 84 HFAIVLPEVVTRQISADGTRKYLIRI-----AGGHEVETVYIPEEGRGTLCVSSQVGCTL 138
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ Q++L R LG++P E R +SN+V+MG
Sbjct: 139 TCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMG 193
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ + D GLS S+RRITLSTSG VP IAR EEIG LAIS HA
Sbjct: 194 MGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHAT 253
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R+ILVPIN+++ + L+D+ R YP LSN+ RITFEYVML G+ND+ DA L+K++
Sbjct: 254 TDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLI 313
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
GIP+KINLIPFN WPG Y S + I F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 SGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K Q TG
Sbjct: 374 SATERARKSRAQIAAETG 391
>gi|83855374|ref|ZP_00948904.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1]
gi|83843217|gb|EAP82384.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1]
Length = 391
Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats.
Identities = 201/378 (53%), Positives = 267/378 (70%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ + AL+ G P++ +MR QIW+WIY G RDF M+++S+ R L +
Sbjct: 23 VNLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I PE+V +++S DGTRK+L+R G E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 83 KFVIEVPEVVTKQVSEDGTRKYLVRI-----AGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPVP-----GTLTDAPRLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R+ LVPIN+++ + LI+A R YP +SN+ RITFEYVML G+NDS DA LI+++
Sbjct: 253 TDEVRDKLVPINKRWNIAELIEALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAKINLIPFN WPG Y S I FSE + ++GY+SP+R PRG DI+AACGQLK
Sbjct: 313 RGIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 373 SATERERKSRKQIEADAG 390
>gi|254439770|ref|ZP_05053264.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307]
gi|198255216|gb|EDY79530.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307]
Length = 394
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 202/377 (53%), Positives = 274/377 (72%), Gaps = 8/377 (2%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++G+ R++L +AL+ +G+ ++ +MR +Q+W+W+Y G+RDF+ M+++S++ R L +H
Sbjct: 25 NIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVRDFEVMTNLSKDFRTTLAEH 84
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
F I PE+V + +S DGTRK+L+R G E+E VYIPEK RGTLC+SSQVGC+LT
Sbjct: 85 FKIELPEVVTKDVSTDGTRKYLVRI-----AGGHEVEVVYIPEKDRGTLCISSQVGCTLT 139
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+MGM
Sbjct: 140 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGENGP---RLLSNIVLMGM 196
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL NF+NV+ ++ IA D G++ S+RRITLSTSG VP I R +EIG MLAIS H +
Sbjct: 197 GEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTADEIGCMLAISFHGTT 256
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+++R+ LVPIN+K+ LE L++A YP +SN+ RITFEYVMLK +NDS DA L+K+++
Sbjct: 257 DEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLIE 316
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
GIPAKINLIPFN WPG Y SD I F++ I +GY+SPIR PRG DI+AACGQLKS
Sbjct: 317 GIPAKINLIPFNEWPGAPYKRSDADRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLKS 376
Query: 368 LSKRIPKVPRQEMQITG 384
++R K +Q G
Sbjct: 377 ATERSRKSRKQIDAEAG 393
>gi|49474851|ref|YP_032892.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1]
gi|81648360|sp|Q6G592|RLMN_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|49237656|emb|CAF26836.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1]
Length = 408
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 250/377 (66%), Positives = 301/377 (79%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K SLIG+ ++E+ EAL IGIP+R RMR Q+W W+YVRG+ +F M +IS+ ++ +
Sbjct: 27 SKLSLIGLSQDEMAEALKAIGIPERQTRMRVRQLWHWLYVRGVSNFDEMLNISKPMQEIF 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+HFSI PEI E+IS DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87 KKHFSIARPEIAGEQISKDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCLSSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVM
Sbjct: 147 TLTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPDRNTPDGAIVPVEGRKITNIVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP + R GEEIGVMLAISLH
Sbjct: 207 MGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPGMIRTGEEIGVMLAISLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV++ LR++LVPIN+KYPL +L+DACR YPGLSNA+RITFEYVMLK +NDS DA L++
Sbjct: 267 AVNDTLRDMLVPINKKYPLALLMDACRQYPGLSNAKRITFEYVMLKDVNDSLDDAKRLVQ 326
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQ 386
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS S+R+ K R ++
Sbjct: 387 LKSASERLRKSERLHLE 403
>gi|49473706|ref|YP_031748.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse]
gi|81647409|sp|Q6G1C0|RLMN_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|49239209|emb|CAF25526.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse]
Length = 409
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 255/379 (67%), Positives = 304/379 (80%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K SLIG+ + E+ EAL IG+P++ RMR Q+W W+YVRG+ +F + +IS+ +R +L
Sbjct: 27 SKRSLIGLSQNEMAEALKAIGVPEQQTRMRVRQLWHWLYVRGVSNFDEILNISKPIREML 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87 KNHFSIARPEIVGEQISKDGTRKWLLRFPAREDGRPVEIETVYIPEEGRGTLCLSSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVM
Sbjct: 147 TLTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPNRTTPDGAIVPVEGRKITNIVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLA+SLH
Sbjct: 207 MGMGEPLYNFEVVKKALLIASDGDGLSLSKRRITLSTSGVVPEIVRAGEEIGVMLAVSLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + LR++LVPIN+KYPL +LIDACR+YPGLSNA+RITFEYVMLKGINDS DA LI+
Sbjct: 267 AVHDTLRDMLVPINKKYPLALLIDACRNYPGLSNAKRITFEYVMLKGINDSLDDAKRLIQ 326
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQ 386
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+R+ K R +++
Sbjct: 387 LKSASERLRKSGRLQIEYA 405
>gi|84515768|ref|ZP_01003129.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53]
gi|84510210|gb|EAQ06666.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53]
Length = 392
Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats.
Identities = 204/378 (53%), Positives = 269/378 (71%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+GM R+ + +AL+ G P++ +MR QIW+W+Y G+RDF M++++++ R +L
Sbjct: 24 PNLVGMTRDGMRDALIAAGTPEKQAKMRVGQIWQWVYHWGVRDFAKMTNLAKDYRAMLAD 83
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F + PE+V ++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+L
Sbjct: 84 NFVVALPEVVTRQVSGDGTRKYLVRI-----AGGHEVEVVYIPETDRGTLCISSQVGCTL 138
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QVL+AR LG++P R +SNIV+MG
Sbjct: 139 TCSFCHTGTQKLVRNLTAAEIIGQVLVARDDLGEWPVQGTP-----KDEVRLLSNIVLMG 193
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG LAIS HA
Sbjct: 194 MGEPLYNFENVRDAMKIAMDPDGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHAT 253
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R+ LVPIN+++PL L+DA R YP +SN+ RITFEYVML G+NDS DA LIK++
Sbjct: 254 TDEVRDKLVPINKRWPLADLLDALRTYPKVSNSERITFEYVMLDGVNDSDADAHRLIKLI 313
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 DGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K Q Q G
Sbjct: 374 SATERARKSKAQIAQEAG 391
>gi|319407894|emb|CBI81546.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 405
Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats.
Identities = 245/373 (65%), Positives = 295/373 (79%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K SLIG+ +E+ +AL +IG+P+ RMR Q+W W+YVRG+ F M +I++ +R +L
Sbjct: 23 SKLSLIGLSHDEMVQALEEIGVPKHQTRMRVRQLWHWLYVRGVSHFDEMLNIAKPMRRML 82
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HFSI PEIV+E+ S DGT KWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 83 QNHFSIARPEIVEEQTSNDGTCKWLLRFPARGAGKPVEIETVYIPEEGRGTLCISSQVGC 142
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G + GRK++NIVM
Sbjct: 143 TLTCSFCHTGTQTLVRNLTAEEILAQLLVARDRLGDFPEKNTPDGAAVSIEGRKVTNIVM 202
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLH
Sbjct: 203 MGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGKEIGVMLAISLH 262
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + LR+ILVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK +NDS DA L++
Sbjct: 263 AVHDALRDILVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKQLVQ 322
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFN WPG Y CSD + I F++ I ++GY+SP+R PRG DILAACGQ
Sbjct: 323 LLKGIPAKINLIPFNSWPGSHYQCSDWEQIERFADVINQAGYASPVRMPRGRDILAACGQ 382
Query: 365 LKSLSKRIPKVPR 377
LKS S+R+ K R
Sbjct: 383 LKSASERLRKSER 395
>gi|254462169|ref|ZP_05075585.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium HTCC2083]
gi|206678758|gb|EDZ43245.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium
HTCC2083]
Length = 391
Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats.
Identities = 200/378 (52%), Positives = 267/378 (70%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ + +AL++ G P++ +MR QIW+WIY G RDF M+++S+ R L +
Sbjct: 23 INLVGLTRDGMRDALIENGTPEKQAKMRVGQIWQWIYQWGKRDFDEMTNLSKTYRAELGE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I PE+V ++S DGTRK+L++ G E+E VYIPE RGTLCVSSQVGC+L
Sbjct: 83 KFVIEVPEVVTRQVSEDGTRKYLVKI-----AGGHEVEVVYIPEDGRGTLCVSSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLNEWP-----EQGAPKDEIRLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D+ G+ S+RRITLSTSG VP IAR EEIG LAIS HA
Sbjct: 193 MGEPLYNFENVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R+ LVPIN+++ + L++A R YP +SN+ RITFEYVML G+ND+ DA LIK++
Sbjct: 253 TDEVRDKLVPINKRWNIAELVEALRAYPRVSNSERITFEYVMLDGVNDTDADAHRLIKLI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIR PRG DI+AACGQLK
Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSGNRIHRFADIIYKAGYASPIRKPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 373 SATERARKSRKQIQAEAG 390
>gi|254477449|ref|ZP_05090835.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11]
gi|214031692|gb|EEB72527.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11]
Length = 396
Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats.
Identities = 198/381 (51%), Positives = 263/381 (69%), Gaps = 12/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ RE++ + L++ G P++ +MR QIW+WIY G RDF+ M+++++ R L
Sbjct: 23 KINLVGLTREQMRDVLIENGTPEKQAKMRVGQIWQWIYQWGKRDFEEMTNLAKGYRAQLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V +++S DGTRK+L+R G E+E VYIPE RGTLCVSSQVGC+
Sbjct: 83 ETFEISVPEVVSKQVSTDGTRKYLVRI-----AGGHEVEVVYIPEDDRGTLCVSSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG +LAIS HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N++R++LVPIN+++ ++ L+ A YP SN+ RITFEYVML G+NDS DA LI
Sbjct: 253 TTNEVRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDSDEDAHRLIDH 312
Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG
Sbjct: 313 IKRYKIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QLKS ++R K +Q G
Sbjct: 373 QLKSATERARKSRKQIEAEAG 393
>gi|85706112|ref|ZP_01037207.1| radical SAM superfamily protein [Roseovarius sp. 217]
gi|85669276|gb|EAQ24142.1| radical SAM superfamily protein [Roseovarius sp. 217]
Length = 392
Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats.
Identities = 205/378 (54%), Positives = 272/378 (71%), Gaps = 9/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ L EAL+ G P++ +MR +QIW+WIY G+RDF M+++++ R L +
Sbjct: 23 VNLVGLTRDALREALIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F + PE+V +++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+L
Sbjct: 83 NFVVTIPEVVSKQVSTDGTRKYLVRI-----AGGHEVEVVYIPETDRGTLCISSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P + G R ISNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPRPGEPVG----ERPRLISNIVLMG 193
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG +LA+S HA
Sbjct: 194 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAQEIGCLLAVSFHAT 253
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ +R+ LVPIN+K+ + L+D R YP LSN+ RITFEYVMLK +NDS DA L++++
Sbjct: 254 TDAVRDALVPINKKWNIATLLDTLRDYPRLSNSERITFEYVMLKDVNDSDADARRLVQLI 313
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFN WPG Y SD+ I F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 KGIPAKINLIPFNEWPGSPYERSDRDRIQRFADIIYKAGYASPIRTPRGEDIMAACGQLK 373
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K Q G
Sbjct: 374 SATERARKSRAQIEAEAG 391
>gi|299133126|ref|ZP_07026321.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
gi|298593263|gb|EFI53463.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
Length = 403
Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats.
Identities = 223/377 (59%), Positives = 286/377 (75%), Gaps = 6/377 (1%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ SLIG+ R EL L ++G+P++ +MR Q+W W+YVRG + F M+++S+++R L
Sbjct: 27 DRPSLIGLSRAELMACLGELGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRTQL 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
F++ PE+V E+IS DGTRKWLLR P +G E+E VYIPE RGTLCVSSQVGC
Sbjct: 87 EARFTVDRPEVVAEQISNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++N+VM
Sbjct: 147 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRET------PNGNRLVTNVVM 200
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L+I D+ G++ S+RRITLSTSG VPNI R+GEE GVMLAISLH
Sbjct: 201 MGMGEPLYNFDAVRDALNIVMDNEGIALSRRRITLSTSGVVPNIGRMGEETGVMLAISLH 260
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LRN LVP+N+KYPL L+DACR+YPG SN+RRITFEYVMLKG+NDS DA L+K
Sbjct: 261 AVRDELRNELVPLNKKYPLAQLLDACRNYPGASNSRRITFEYVMLKGVNDSLDDAKLLVK 320
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGIPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 381 LKSETEKLSVRERDALR 397
>gi|90421104|ref|ZP_01229006.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas
manganoxydans SI85-9A1]
gi|90334596|gb|EAS48376.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas
manganoxydans SI85-9A1]
Length = 413
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 230/377 (61%), Positives = 298/377 (79%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SL+G+ R L EAL +G+P + +RMR +Q+W W+YVRG+ DF M++++ +R L
Sbjct: 27 EKPSLVGLDRAALGEALSAVGVPDKQIRMRVAQLWHWLYVRGVADFSQMANVAGTLRQAL 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ ++I PE+VDE+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87 HEAYTIARPEVVDEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTC+FC+TGTQ+LVRNL +EI+ Q+L AR LGD P G ++P+ GR ++N+V+
Sbjct: 147 TLTCTFCHTGTQRLVRNLLPDEIVGQILAARERLGDLPDAATPAGAIVPNGGRLVTNVVL 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N+DNV++++++ASD GLS SKRRITLSTSG VP+I + GEE+GV LAISLH
Sbjct: 207 MGMGEPLYNYDNVRQAMAVASDGEGLSLSKRRITLSTSGVVPSIVKAGEEMGVSLAISLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLK +NDS DA L++
Sbjct: 267 AVRDELRDELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKDVNDSMADAKELVR 326
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
IL+GIPAKINLIPFNPWPG Y CSD I F++ + ++GY+SPIRTPRG DI AACGQ
Sbjct: 327 ILRGIPAKINLIPFNPWPGSAYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFAACGQ 386
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS S+R+ K R ++
Sbjct: 387 LKSESERLKKSARDRLE 403
>gi|83941897|ref|ZP_00954359.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
gi|83847717|gb|EAP85592.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
Length = 391
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 202/378 (53%), Positives = 266/378 (70%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ + AL+ G P++ +MR QIW+WIY G RDF M+++S+ R L +
Sbjct: 23 VNLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I PE+V +++S DGTRK+L+R G E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 83 KFVIEVPEVVTKQVSEDGTRKYLVRI-----AGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPVP-----GTLTDAPRLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++RN LVPIN+++ + LI A R YP +SN+ RITFEYVML G+NDS DA LI+++
Sbjct: 253 TDEVRNKLVPINKRWNIAELIKALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELI 312
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAKINLIPFN WPG Y S I FSE + ++GY+SP+R PRG DI+AACGQLK
Sbjct: 313 RGIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLK 372
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 373 SATERERKSRKQIEADAG 390
>gi|158422376|ref|YP_001523668.1| hypothetical protein AZC_0752 [Azorhizobium caulinodans ORS 571]
gi|205829661|sp|A8IQ73|RLMN_AZOC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|158329265|dbj|BAF86750.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 406
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 220/372 (59%), Positives = 286/372 (76%), Gaps = 2/372 (0%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
SL G+ RE+L AL IG+P+R +MR +Q+W WIY+RG DF M+++S+ +R L +
Sbjct: 23 PSLAGLDREKLGLALAAIGVPERERKMRVNQLWHWIYLRGATDFAEMTNVSKTLRTQLAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGCS 125
H+S+ PEIV E++S DGTRKWLLR PA G E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 83 HYSLARPEIVVEQVSQDGTRKWLLRLPAETPGERPHEVEAVYIPERDRGTLCVSSQVGCT 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
L C+FC+TGTQ+LVRNLTA EI+ QVL+AR LGD+PG E G +P+ G + ++NIV
Sbjct: 143 LNCAFCHTGTQRLVRNLTAAEIVAQVLVARDRLGDYPGRERAVGPGLPTEGDRLVTNIVF 202
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL +D+V +++ I +D GL KRRIT+STSG VP I ++G E+G MLAISLH
Sbjct: 203 MGMGEPLYAYDSVAEAIEILADGDGLGLGKRRITVSTSGVVPEIEKLGREVGPMLAISLH 262
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV +DLR++LVPIN+KYP+ L++ACR YP SNA+RITFEYVMLKG+NDSP DA L+K
Sbjct: 263 AVRDDLRDVLVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVK 322
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+PAKINLIPFNPWPG +Y CSD + I FS+ + R+GY+SP+RTPRG DILAACGQ
Sbjct: 323 LLEGVPAKINLIPFNPWPGTKYECSDWETIEKFSDIVFRAGYASPVRTPRGRDILAACGQ 382
Query: 365 LKSLSKRIPKVP 376
LKS ++++
Sbjct: 383 LKSETEKLSARE 394
>gi|316931629|ref|YP_004106611.1| radical SAM protein [Rhodopseudomonas palustris DX-1]
gi|315599343|gb|ADU41878.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris DX-1]
Length = 399
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 227/377 (60%), Positives = 283/377 (75%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R +L + L +IG+ +MR Q+W W+YVRG RDF M+++S+E+R L
Sbjct: 23 KPSLIGLSRAQLCDRLGEIGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
+H ++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC
Sbjct: 83 EHVTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWIDRET------PNGNRLITNIVM 196
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+ND+ DA L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDTIDDARKLVQ 316
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG +Y CSD I FSE I +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 377 LKSETEKLSVRERDALR 393
>gi|298293307|ref|YP_003695246.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506]
gi|296929818|gb|ADH90627.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506]
Length = 409
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 215/373 (57%), Positives = 282/373 (75%), Gaps = 2/373 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ SL G+ R L EAL +IG+ +R RMR +Q+W WIY+RG+ F M+++ + +R L
Sbjct: 25 RRSLAGLDRAGLAEALAEIGVSEREQRMRVAQLWHWIYLRGVTSFDEMTNVGKGLRAKLE 84
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGC 124
+ F++ PE+V E++S DGTRKWLLR P G ++E VYIPE RGTLCVSSQVGC
Sbjct: 85 EAFTLARPEVVVEQVSNDGTRKWLLRLPPDIAGDKPHDVEMVYIPESDRGTLCVSSQVGC 144
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183
+L CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+PG E G +P+ G + ++NIV
Sbjct: 145 TLNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGQERAVGPGLPTEGDRLVTNIV 204
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL +D+V +++ + +D GL KRRIT+STSG VP I ++G E+G MLAISL
Sbjct: 205 FMGMGEPLYAYDSVARAIEVLADGEGLGIGKRRITVSTSGVVPEIEKLGREVGPMLAISL 264
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HAV ++LR++LVPIN+KYPL+ L+DACR YP SNA+RITFEYVMLKG+NDSP DA L+
Sbjct: 265 HAVRDELRDVLVPINKKYPLKDLLDACRTYPAASNAKRITFEYVMLKGVNDSPADAKALV 324
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L GIPAKINLIPFNPWPG +Y CSD + I FS+ + R+GYSSP+RTPRG DILAACG
Sbjct: 325 RLLAGIPAKINLIPFNPWPGTKYECSDWETIERFSDIVFRAGYSSPVRTPRGRDILAACG 384
Query: 364 QLKSLSKRIPKVP 376
QLKS ++++
Sbjct: 385 QLKSETEKLSARE 397
>gi|86747220|ref|YP_483716.1| hypothetical protein RPB_0093 [Rhodopseudomonas palustris HaA2]
gi|123293381|sp|Q2J405|RLMN_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|86570248|gb|ABD04805.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 399
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 226/377 (59%), Positives = 283/377 (75%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R EL E L IG+ +MR Q+W W+YVRG RDF M+++S+E+R L
Sbjct: 23 KPSLIGLSRAELAERLGAIGVAPAQRKMRAQQLWHWMYVRGARDFAEMTNVSKEMRATLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVGC 124
+H ++ PE+V E+IS DGTRKWLLR P+ E+E VYIPE RGTLCVSSQVGC
Sbjct: 83 EHCTVDRPEVVAEQISADGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 142
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R ++N+VM
Sbjct: 143 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLVTNVVM 196
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ V+ +L I +D+ G+ S+RR+TLSTSG VPNIAR G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIARTGDEIGVMLAISLH 256
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 316
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG +Y CSD I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 377 LKSETEKLSVRERDALR 393
>gi|154251833|ref|YP_001412657.1| radical SAM protein [Parvibaculum lavamentivorans DS-1]
gi|205829796|sp|A7HSW7|RLMN_PARL1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|154155783|gb|ABS63000.1| radical SAM enzyme, Cfr family [Parvibaculum lavamentivorans DS-1]
Length = 399
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 223/379 (58%), Positives = 275/379 (72%), Gaps = 7/379 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L G+ R L +AL G+P +RMR QIW +Y RG DF+ M+ +S+E+R L
Sbjct: 21 RPHLAGLTRPLLMDALKAFGLPDNQLRMRAGQIWNGLYNRGFTDFERMTTLSKELRGKLA 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
F I EIV E+ S DGTRKWLLR P+ G E+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 81 DAFDISRLEIVTEQKSVDGTRKWLLRLPSGIPGVPGPEVETVYIPEEGRGTLCVSSQVGC 140
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTC+FC+TGTQKLVRNLTA EI+ Q+LLAR LG++P S R I+NIVM
Sbjct: 141 TLTCTFCHTGTQKLVRNLTAGEIVGQILLARDALGEWPDGGR------NSEDRLITNIVM 194
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV+ +L + SD GLS SKRRITLSTSG VP I R GEEIG MLAISLH
Sbjct: 195 MGMGEPLYNFENVRDALEVVSDGEGLSLSKRRITLSTSGVVPMIERAGEEIGCMLAISLH 254
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++ RN LVP+N+KYP+ L++ACR+YPG+SNARRITFEYVMLKG+NDS DA L++
Sbjct: 255 AVDDETRNRLVPLNKKYPIAELLEACRNYPGVSNARRITFEYVMLKGVNDSLEDAKALVR 314
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK IPAKINLIPFNPWPG Y CSD + I F++ + R+GY+SP+RTPRG DI+AACGQ
Sbjct: 315 LLKHIPAKINLIPFNPWPGSPYECSDWEQIEKFADVVNRAGYASPVRTPRGRDIMAACGQ 374
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS + + R + +
Sbjct: 375 LKSETVKARASERFKGEKA 393
>gi|146276099|ref|YP_001166258.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17025]
gi|205829868|sp|A4WNI9|RLMN_RHOS5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145554340|gb|ABP68953.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17025]
Length = 392
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 210/377 (55%), Positives = 275/377 (72%), Gaps = 10/377 (2%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++G+ REEL AL+ G P+R RMR Q+W+W+Y G+RDF M++++++ R LL +H
Sbjct: 25 NIVGLTREELMAALVAAGTPERQARMRMGQVWQWVYHWGVRDFAQMTNLAKDYRALLAEH 84
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
F+I+ PE+V +IS DGTRK+L+R G E+ETVYIPE+ RGTLCVSSQVGC+LT
Sbjct: 85 FAIVLPEVVTRQISADGTRKYLIRI-----AGGHEVETVYIPEEGRGTLCVSSQVGCTLT 139
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC+TGTQKLVRNLTA EI+ QV+L R LG++P E R +SN+V+MGM
Sbjct: 140 CSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMGM 194
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL NF+NV+ ++ + D GLS S+RRITLSTSG VP IAR EEIG LAIS HA +
Sbjct: 195 GEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 254
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+++R+ILVPIN+++ + L+D+ R YP LSN+ RITFEYVML GINDS DA L+K++
Sbjct: 255 DEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGINDSDADARRLVKLIS 314
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
GIP+KINLIPFN WPG Y S + I F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 315 GIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374
Query: 368 LSKRIPKVPRQEMQITG 384
++R K Q TG
Sbjct: 375 ATERARKSRAQIAAETG 391
>gi|254512050|ref|ZP_05124117.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11]
gi|221535761|gb|EEE38749.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11]
Length = 397
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 203/381 (53%), Positives = 264/381 (69%), Gaps = 12/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R+ L AL++ G P++ +MRT QIW+WIY G+RDF M+++++ R L
Sbjct: 22 KVNLVGLTRDALRAALIEHGTPEKQAKMRTGQIWQWIYQWGVRDFAEMTNLAKAYRAQLA 81
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I PE+V ++S DGTRK+L R G E+E VYIPE RGTLC+SSQVGC+
Sbjct: 82 EHFVIEIPEVVTRQVSEDGTRKYLCRI-----AGGHEVEVVYIPEDDRGTLCISSQVGCT 136
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 191
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS HA
Sbjct: 192 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++ R++LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+NDS DA LI+
Sbjct: 252 TTDETRDMLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDSDADAHRLIEH 311
Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG
Sbjct: 312 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAACG 371
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QLKS ++R K +Q G
Sbjct: 372 QLKSATERARKSRKQIEAEAG 392
>gi|254451490|ref|ZP_05064927.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238]
gi|198265896|gb|EDY90166.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238]
Length = 399
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 201/378 (53%), Positives = 272/378 (71%), Gaps = 8/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++G+ R++L +AL+ +G+ ++ +MR +Q+W+W+Y G+R+F M+++S++ R L +
Sbjct: 29 TNIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVREFDVMTNLSKDFRATLAE 88
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF I PE+V + +S DGTRK+L+R G E+E VYIPEK RGTLC+SSQVGC+L
Sbjct: 89 HFKIELPEVVTKDVSTDGTRKYLVRI-----AGGHEVEVVYIPEKDRGTLCISSQVGCTL 143
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+MG
Sbjct: 144 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGDNGP---RLLSNIVLMG 200
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV+ ++ IA D G++ S+RRITLSTSG VP I R EIG MLAIS H
Sbjct: 201 MGEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTANEIGCMLAISFHGT 260
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R+ LVPIN+K+ LE L++A YP +SN+ RITFEYVMLK +NDS DA L+K++
Sbjct: 261 TDEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLI 320
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAKINLIPFN WPG Y SD I F++ I +GY+SPIR PRG DI+AACGQLK
Sbjct: 321 EGIPAKINLIPFNEWPGAPYKRSDSDRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLK 380
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 381 SATERARKSRKQIDADAG 398
>gi|188580846|ref|YP_001924291.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001]
gi|205829790|sp|B1ZG98|RLMN_METPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|179344344|gb|ACB79756.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001]
Length = 425
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 220/380 (57%), Positives = 284/380 (74%), Gaps = 5/380 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL+G+ RE L++AL+ IG+P+R RMR SQIW W+YVRG R+F M+++ + ++ L
Sbjct: 35 KASLVGLTREGLKQALIGIGVPERETRMRVSQIWHWLYVRGAREFSEMTNVGKGLKAQLA 94
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQV 122
+HF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQV
Sbjct: 95 EHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQV 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G VGR ++NI
Sbjct: 155 GCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTGQ--MPGKDGGEVGRLVTNI 212
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAIS
Sbjct: 213 VFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAIS 272
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LR+ LVP+NRKYP+ L++ACR+YPGLSNARRITFEYVMLKG+NDS DA L
Sbjct: 273 LHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARAL 332
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAAC
Sbjct: 333 VRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAAC 392
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQLKS ++++ R ++
Sbjct: 393 GQLKSETEKLRARARMMLEE 412
>gi|149913266|ref|ZP_01901800.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b]
gi|149813672|gb|EDM73498.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b]
Length = 382
Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats.
Identities = 203/378 (53%), Positives = 275/378 (72%), Gaps = 9/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ L E L++ G P++ +MR +QIW+W+Y G+RDF M+++S+ R +L +
Sbjct: 12 TNLVGLTRDRLREVLIEAGTPEKQAKMRVNQIWQWLYQWGVRDFHAMTNLSKTYRQMLAE 71
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F I PE+V +++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+L
Sbjct: 72 NFVIEIPEMVSKQVSADGTRKYLVRI-----AGGHEVEVVYIPETDRGTLCISSQVGCTL 126
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNL+A EI+ QV++AR L ++P + G R +SNIV+MG
Sbjct: 127 TCSFCHTGTQKLVRNLSAGEIVGQVMMARDDLDEWPRPGEGAG----ERPRLLSNIVLMG 182
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG MLA+S HA
Sbjct: 183 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHAT 242
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R+ LVPIN+K+ +E L+ A R YP LSN+ RITFEYVMLK +NDS DA L++++
Sbjct: 243 TDEVRDKLVPINKKWNIETLLGALREYPRLSNSERITFEYVMLKDVNDSDADARRLVQLI 302
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFN WPG + SD I F++ + ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 303 KGIPAKINLIPFNEWPGAPHQRSDWDRIEKFADIVYKAGYASPIRTPRGEDIMAACGQLK 362
Query: 367 SLSKRIPKVPRQEMQITG 384
S ++R K +Q G
Sbjct: 363 SATERARKSRKQIESEAG 380
>gi|99082854|ref|YP_615008.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
gi|122984035|sp|Q1GC70|RLMN_SILST RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|99039134|gb|ABF65746.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
Length = 397
Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats.
Identities = 198/381 (51%), Positives = 262/381 (68%), Gaps = 12/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R+ + L++ G P++ +MR QIW+WIY G+RDF M+++++ R L
Sbjct: 23 KINLVGLTRDRMRAVLIENGTPEKQAKMRVGQIWQWIYQWGVRDFAEMTNLAKAYRAQLE 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V +++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+
Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVRIN-----GGHEVEVVYIPEDDRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS HA
Sbjct: 193 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N++R++LVPINR++ ++ L+ A YP +SN+ RITFEYVML G+NDS DA L+
Sbjct: 253 TTNEVRDVLVPINRRWNIDELLQALADYPKVSNSERITFEYVMLDGVNDSDEDAHRLLDH 312
Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG
Sbjct: 313 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QLKS ++R K +Q G
Sbjct: 373 QLKSATERARKSRKQIEAEAG 393
>gi|323136337|ref|ZP_08071419.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
gi|322398411|gb|EFY00931.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
Length = 392
Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats.
Identities = 226/379 (59%), Positives = 279/379 (73%), Gaps = 3/379 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SL GM R E+ + L G+P+R +RMR SQ+W WIY RG RDF M +IS+ +R L
Sbjct: 13 EKPSLAGMTRAEIADTLRAFGLPEREIRMRVSQLWHWIYFRGARDFGEMLNISKSLRLTL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ F + +PEIV+E++S DGTRKWLLR P E+E VYIPE RGTLCVSSQVG
Sbjct: 73 DGAFGLRHPEIVEEQVSVDGTRKWLLRLAPVDAQDKGAEVECVYIPESDRGTLCVSSQVG 132
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181
C+L CSFC+TGTQKLVRNLT+ EI+ Q+L+AR LGDFP E ++PS R +SN
Sbjct: 133 CTLNCSFCHTGTQKLVRNLTSAEIIGQLLVARQRLGDFPDRERPTDGLVPSGEGVRAVSN 192
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
IV MGMGEPL N DNV ++ + +D GLS SKRRIT+STSG VP I R+G E G LAI
Sbjct: 193 IVFMGMGEPLYNIDNVMAAIEVMADGDGLSLSKRRITVSTSGVVPQIERLGAECGPALAI 252
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHAV +DLRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDSP +A
Sbjct: 253 SLHAVRDDLRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSPAEARE 312
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++LKG+PAKINLIPFNPWPG Y CSD + I FS+ + +GY+SP+RTPRG DILAA
Sbjct: 313 LVRLLKGVPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAA 372
Query: 362 CGQLKSLSKRIPKVPRQEM 380
CGQLKS ++++ R
Sbjct: 373 CGQLKSETEKLRARARLAA 391
>gi|121601967|ref|YP_989610.1| radical SAM protein [Bartonella bacilliformis KC583]
gi|205829667|sp|A1UUF7|RLMN_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|120614144|gb|ABM44745.1| radical SAM enzyme, Cfr family [Bartonella bacilliformis KC583]
Length = 414
Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats.
Identities = 252/375 (67%), Positives = 299/375 (79%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SLIG+ +E+ +AL IG+P+ RMR Q+W W YVRG+ F M +IS+ +R +L
Sbjct: 30 QSLIGLSHDEMVQALRSIGVPEHQTRMRVRQLWHWFYVRGVSSFDEMFNISKPMREMLKD 89
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+FSI YPEIV+E+IS DGT KWLLRFPAR G PVEIETVYIP + RGTLCVSSQVGC+L
Sbjct: 90 NFSIAYPEIVEEQISKDGTYKWLLRFPARGAGKPVEIETVYIPGEGRGTLCVSSQVGCTL 149
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFCYTGTQKLVRNLTAEEILLQ+L AR+ LGDFPG + + + RKI+NIVMMG
Sbjct: 150 TCSFCYTGTQKLVRNLTAEEILLQLLFARNRLGDFPGKDKPDHSSLSEERRKITNIVMMG 209
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLA+SLHAV
Sbjct: 210 MGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGEEIGVMLAVSLHAV 269
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR++LVPIN+KYPL ML++ACR+YPGLSNA+RITFEYVMLK +NDS DA LIK+L
Sbjct: 270 CDSLRDVLVPINKKYPLSMLMEACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKKLIKLL 329
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFNPWPG Y CSD + I F++ I R+GY+SPIR PRG DILAACG LK
Sbjct: 330 KGIPAKINLIPFNPWPGSHYECSDWEQIERFADVINRAGYASPIRMPRGRDILAACGNLK 389
Query: 367 SLSKRIPKVPRQEMQ 381
S S+R+ K R +++
Sbjct: 390 STSERLRKSERLQLE 404
>gi|240138201|ref|YP_002962673.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
AM1]
gi|254560761|ref|YP_003067856.1| Fe-S containing enzyme [Methylobacterium extorquens DM4]
gi|240008170|gb|ACS39396.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
AM1]
gi|254268039|emb|CAX23910.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
DM4]
Length = 425
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 221/380 (58%), Positives = 282/380 (74%), Gaps = 5/380 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L
Sbjct: 35 KASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQLA 94
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQV 122
HF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQV
Sbjct: 95 DHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQV 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + P GR ++NI
Sbjct: 155 GCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTNI 212
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAIS
Sbjct: 213 VFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAIS 272
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV +DLR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA L
Sbjct: 273 LHAVRDDLRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARAL 332
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAAC
Sbjct: 333 VRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAAC 392
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQLKS ++++ R ++
Sbjct: 393 GQLKSETEKLRARARLMLEE 412
>gi|163851067|ref|YP_001639110.1| radical SAM protein [Methylobacterium extorquens PA1]
gi|205829789|sp|A9W383|RLMN_METEP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|163662672|gb|ABY30039.1| radical SAM enzyme, Cfr family [Methylobacterium extorquens PA1]
Length = 425
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 219/380 (57%), Positives = 282/380 (74%), Gaps = 5/380 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L
Sbjct: 35 KASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQLA 94
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQV 122
HF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQV
Sbjct: 95 DHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQV 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + P GR ++NI
Sbjct: 155 GCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTNI 212
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP + R+G E MLAIS
Sbjct: 213 VFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQMERLGLEANAMLAIS 272
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA L
Sbjct: 273 LHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARAL 332
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAAC
Sbjct: 333 VRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAAC 392
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQLKS ++++ R ++
Sbjct: 393 GQLKSETEKLRARARLMLEE 412
>gi|218529897|ref|YP_002420713.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum
CM4]
gi|218522200|gb|ACK82785.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum
CM4]
Length = 425
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 220/380 (57%), Positives = 282/380 (74%), Gaps = 5/380 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L
Sbjct: 35 KASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQLA 94
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQV 122
HF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQV
Sbjct: 95 DHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQV 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + P GR ++NI
Sbjct: 155 GCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTNI 212
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAIS
Sbjct: 213 VFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAIS 272
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA L
Sbjct: 273 LHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARAL 332
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAAC
Sbjct: 333 VRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAAC 392
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQLKS ++++ R ++
Sbjct: 393 GQLKSETEKLRARARLMLEE 412
>gi|90421563|ref|YP_529933.1| hypothetical protein RPC_0035 [Rhodopseudomonas palustris BisB18]
gi|122995691|sp|Q21DC2|RLMN_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|90103577|gb|ABD85614.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 399
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 228/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ SLIG+ R EL EAL IG+ +MR Q+W W+Y RG+++F M+ IS+E+R L
Sbjct: 23 RPSLIGLSRAELAEALGGIGVAASQRKMRAQQLWHWMYFRGVQEFAEMTSISKEMRSQLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGC 124
+HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC
Sbjct: 83 EHFTVARPEVVAEQISNDGTRKWLLRLPSGVSGEKAHEVECVYIPETDRGTLCVSSQVGC 142
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQKLVRNLTA EI+ QV++AR L D+ E P+ R ++N+VM
Sbjct: 143 TLNCSFCHTGTQKLVRNLTAGEIVGQVMVARDRLNDWADRET------PNGNRLVTNVVM 196
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I SD+ G+ S+RR+TLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRVTLSTSGVVPNIVRAGEEIGVMLAISLH 256
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYPL L+ ACR YPG SNARRITFEYVMLK +NDS DA L+K
Sbjct: 257 AVRDELRDELVPLNRKYPLAELLQACRDYPGASNARRITFEYVMLKDVNDSLDDAKLLVK 316
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L GIPAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLSGIPAKINLIPFNPWPGTAYKCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R+ ++
Sbjct: 377 LKSETEKLTAREREALR 393
>gi|146337410|ref|YP_001202458.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS278]
gi|205829673|sp|A4YJY2|RLMN_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146190216|emb|CAL74208.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS278]
Length = 403
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 227/377 (60%), Positives = 279/377 (74%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R EL L IG+P+R +MR Q+W W+Y RG R F M+ +S++ R+ L
Sbjct: 27 KPSLIGLSRAELAARLGDIGVPERQQKMRVQQLWHWLYFRGARSFDEMTSVSKDTRNGLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F++ PE+V E+IS DGTRKWLLR P+ E+E VYIPE RGTLCVSSQVGC
Sbjct: 87 ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R I+NIVM
Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLITNIVM 200
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ V+ +L I SD+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 201 MGMGEPLYNFEAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LRN LVP+NRKYP+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K
Sbjct: 261 AVRDELRNELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ RQ ++
Sbjct: 381 LKSETEKLSARERQALR 397
>gi|148251858|ref|YP_001236443.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. BTAi1]
gi|205829672|sp|A5E8P3|RLMN_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146404031|gb|ABQ32537.1| 23S rRNA m(2)A-2503 methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 403
Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats.
Identities = 229/377 (60%), Positives = 278/377 (73%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R EL L +G+P+R +MR Q+W WIY RG R F MS +S++ R L
Sbjct: 27 KPSLIGLSRAELAARLGDVGVPERQQKMRVQQLWHWIYFRGARSFDEMSSVSKDTRTALA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F++ PE+V E+IS DGTRKWLLR P+ E+E VYIPE RGTLCVSSQVGC
Sbjct: 87 ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P R I+NIVM
Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRET------PHGNRLITNIVM 200
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 201 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYP+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K
Sbjct: 261 AVRDELRDELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ RQ ++
Sbjct: 381 LKSETEKLSARERQALR 397
>gi|154244355|ref|YP_001415313.1| radical SAM protein [Xanthobacter autotrophicus Py2]
gi|205829935|sp|A7ICB3|RLMN_XANP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|154158440|gb|ABS65656.1| radical SAM enzyme, Cfr family [Xanthobacter autotrophicus Py2]
Length = 414
Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats.
Identities = 222/377 (58%), Positives = 284/377 (75%), Gaps = 2/377 (0%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
SLIG+ R++L AL IG+ RMR +Q+W WIY+RG DF M+++S+ +R L
Sbjct: 31 PSLIGLDRDKLGAALDAIGVRGSDRRMRVNQLWHWIYLRGATDFAEMTNVSKHLRADLAA 90
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGCS 125
+S+ PEIV E++S DGTRKWLLRFPA G +IETVYIPE RGTLCVSSQVGC+
Sbjct: 91 AYSLARPEIVMEQVSQDGTRKWLLRFPADHPGERPHDIETVYIPESDRGTLCVSSQVGCT 150
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
L CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+PG + G +P+ G + ++NIV
Sbjct: 151 LNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGRDRATGPGLPTEGDRLVTNIVF 210
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL +D+VK+++ SD GL KRRIT+STSG VP I R+G E+G MLAISLH
Sbjct: 211 MGMGEPLYAYDSVKEAIETLSDGDGLGLGKRRITVSTSGVVPEIERLGAEVGPMLAISLH 270
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + LR+ LVPIN+KYP+ L++ACR YP SNA+RITFEYVMLKG+NDSP DA L+K
Sbjct: 271 AVRDKLRDELVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVK 330
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+PAKINLIPFNPWPG +Y CSD + I FS+ + R+GY+SP+RTPRG DILAACGQ
Sbjct: 331 LLEGVPAKINLIPFNPWPGTQYECSDWETIERFSDIVFRAGYASPVRTPRGRDILAACGQ 390
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS S+++ R ++
Sbjct: 391 LKSESEKLSARERLALR 407
>gi|56698170|ref|YP_168542.1| radical SAM protein [Ruegeria pomeroyi DSS-3]
gi|81348990|sp|Q5LN66|RLMN_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|56679907|gb|AAV96573.1| radical SAM enzyme, Cfr family [Ruegeria pomeroyi DSS-3]
Length = 393
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 197/381 (51%), Positives = 266/381 (69%), Gaps = 12/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+G+ R+ + E L+ G P++ +MR QIW+WIY G+RDF+ M+++++ R L
Sbjct: 22 RINLVGLTRDRMREVLIDHGTPEKQAKMRVGQIWQWIYQWGVRDFEAMTNLAKAYRAQLA 81
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF+I PE++ +S DGTRK+L+R G E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 82 EHFTIEIPEVITRLVSEDGTRKYLVRI-----AGGHEVEVVYIPEEDRGTLCISSQVGCT 136
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVP-----GAPKDETRLLSNIVLM 191
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG +LAIS HA
Sbjct: 192 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R++LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+NDS DA L+
Sbjct: 252 TTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADAHRLLDH 311
Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++ IPAKINLIPFN WPG Y S I F+ I ++GY++PIR RG DI+AACG
Sbjct: 312 IRRYKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYAAPIRKTRGDDIMAACG 371
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QLKS ++R K +Q TG
Sbjct: 372 QLKSATERARKSKKQIEAETG 392
>gi|220924357|ref|YP_002499659.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060]
gi|219948964|gb|ACL59356.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060]
Length = 431
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 217/381 (56%), Positives = 279/381 (73%), Gaps = 4/381 (1%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M + SL+G+ R L E L IG+P+R RMRT Q+W WI VRG F+ M+++ + +
Sbjct: 32 MVATGRPSLVGLTRNALRERLAAIGVPEREQRMRTGQLWHWINVRGASSFEAMTNVGKAL 91
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLC 117
+ L Q +++ PE+V E++S DGTRKWLLR P EIE VYIP RGTLC
Sbjct: 92 KAELEQVYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLC 151
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VSSQVGC+LTCSFC+TGTQ+LVRNL+A+EI Q+++AR LGD+PG +G +P G
Sbjct: 152 VSSQVGCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQSPPKGTFVPVDGS 211
Query: 178 K-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
+ +SN+V MGMGEPL N DNV ++ + SD+ GL S+RRIT+STSG VP R+G +
Sbjct: 212 RFVSNVVFMGMGEPLYNVDNVIDAIGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDAN 271
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
MLAISLHAV +DLRN+LVP+NRKYP+ L+DACR+YPG+SNARRITFEYVMLKG+NDS
Sbjct: 272 AMLAISLHAVRDDLRNVLVPLNRKYPIRELLDACRNYPGVSNARRITFEYVMLKGVNDSD 331
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+A L+++LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GY+SP+RTPRG
Sbjct: 332 AEARELVRLLKGIPAKINLIPFNPWPGSSYECSDWERIERFSEIVFNAGYASPVRTPRGR 391
Query: 357 DILAACGQLKSLSKRIPKVPR 377
DILAACGQLKS ++++ R
Sbjct: 392 DILAACGQLKSETEKLRARAR 412
>gi|126738619|ref|ZP_01754324.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6]
gi|126720418|gb|EBA17124.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6]
Length = 396
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 197/381 (51%), Positives = 265/381 (69%), Gaps = 12/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R+++ E L++ G P++ +MR QIW+WIY G RDF M+++++ R L+
Sbjct: 23 KINLVGLTRDKMREVLIEHGTPEKQAKMRVGQIWQWIYQWGKRDFADMTNLAKAYRAQLD 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I PE+V +++S DGTRK+L+R G E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83 EHFEIRIPEVVSKQVSTDGTRKYLVRI-----AGGHEVEVVYIPEEDRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT E++ QV++AR L ++P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEVIGQVMMARDDLEEWPIP-----GAPKDETRLLSNIVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG +LAIS HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ND+R++LVPIN+++ ++ L+ A YP SN+ RITFEYVMLK +NDS DA LI+
Sbjct: 253 TTNDVRDVLVPINKRWNIDALLQALADYPKASNSERITFEYVMLKDVNDSDEDAHRLIEH 312
Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG
Sbjct: 313 IKRYNIPAKINLIPFNEWPGSPYQRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QLKS ++R K +Q G
Sbjct: 373 QLKSATERARKSRKQIEAEAG 393
>gi|23012331|ref|ZP_00052443.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
magnetotacticum MS-1]
Length = 425
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 221/379 (58%), Positives = 283/379 (74%), Gaps = 5/379 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL+G RE L++AL+ IG+P+R RMRTSQIW W+YVRG R+F M+++ + ++ L
Sbjct: 35 KASLVGQTREGLKQALIGIGVPEREARMRTSQIWHWLYVRGAREFSEMTNVGKGLKAQLA 94
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQV 122
QHF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQV
Sbjct: 95 QHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQV 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G GR ++NI
Sbjct: 155 GCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTGQ--MPGKDGGEAGRLVTNI 212
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAIS
Sbjct: 213 VFMGMGEPLYNLDAVIDAIAVMSDPEGLALSRRRITVSTSGVVPQIERLGLEANAMLAIS 272
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LR+ LVP+NRKYP+ L++ACR+YPGLSNARRITFEYVMLKG+NDS DA L
Sbjct: 273 LHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARAL 332
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAAC
Sbjct: 333 VRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAAC 392
Query: 363 GQLKSLSKRIPKVPRQEMQ 381
GQLKS ++++ R ++
Sbjct: 393 GQLKSETEKLRARARMMLE 411
>gi|89070636|ref|ZP_01157916.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516]
gi|89043783|gb|EAR49985.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516]
Length = 392
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 205/371 (55%), Positives = 271/371 (73%), Gaps = 8/371 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+G+ R L EAL G P + VRMR +Q+W+WIY G+RDF+ M+++++ R LL
Sbjct: 23 RTNLVGLTRPALAEALRAAGTPDKQVRMRVNQVWQWIYHWGVRDFEAMTNLAKPYRALLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F I PEIV ++S DGTRK+L+R G E+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 83 ENFEIALPEIVSRQVSNDGTRKYLVRI-----AGGHEVETVYIPEEDRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT EI+ Q++LAR LG++P G P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQIMLARDDLGEWPAPGTGTGESGP---RLLSNIVLM 194
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFD V+ ++ IA D G++ S+RRITLSTSG V IAR EEIG MLA+S HA
Sbjct: 195 GMGEPLYNFDAVRDAMKIAMDGEGIALSRRRITLSTSGVVAEIARCAEEIGCMLAVSFHA 254
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ LVPIN+K+ +E L+++ + YP LSN+ RITFEYVMLK +NDS DA L+K+
Sbjct: 255 TTDEVRDRLVPINKKWNIETLLESLKAYPKLSNSERITFEYVMLKDVNDSDDDARRLVKL 314
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IEGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 374
Query: 366 KSLSKRIPKVP 376
KS ++R K
Sbjct: 375 KSATERARKSR 385
>gi|159045851|ref|YP_001534645.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12]
gi|157913611|gb|ABV95044.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12]
Length = 406
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 210/379 (55%), Positives = 274/379 (72%), Gaps = 9/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R EL EAL G P++ V+MR +QIW+W+Y RG+RDF M+++++ R LL
Sbjct: 35 KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 94
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I PE+V +S DGTRK+L+R G E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 95 DQFEIAVPEVVSRHVSEDGTRKYLVRI-----AGGHEVEVVYIPEEDRGTLCVSSQVGCT 149
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ Q+++AR LG++P + G + R +SNIV+M
Sbjct: 150 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 205
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG MLA+S HA
Sbjct: 206 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 265
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ LVPIN+++ + L+DA R YP SN+ RITFEYVMLKG+NDS DA L+++
Sbjct: 266 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 325
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 326 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 385
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K Q TG
Sbjct: 386 KSATERARKSRAQIAAETG 404
>gi|205829860|sp|A8LNF0|RLMN_DINSH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 394
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 210/379 (55%), Positives = 274/379 (72%), Gaps = 9/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R EL EAL G P++ V+MR +QIW+W+Y RG+RDF M+++++ R LL
Sbjct: 23 KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I PE+V +S DGTRK+L+R G E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 83 DQFEIAVPEVVSRHVSEDGTRKYLVRI-----AGGHEVEVVYIPEEDRGTLCVSSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTA EI+ Q+++AR LG++P + G + R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 193
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG MLA+S HA
Sbjct: 194 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 253
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ LVPIN+++ + L+DA R YP SN+ RITFEYVMLKG+NDS DA L+++
Sbjct: 254 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 313
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 373
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K Q TG
Sbjct: 374 KSATERARKSRAQIAAETG 392
>gi|319404936|emb|CBI78538.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 409
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 250/376 (66%), Positives = 297/376 (78%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K LIG+ ++E+ +AL IG+P+ RMR Q+W W+YVRG+ F M +IS+ +R +L
Sbjct: 28 KLPLIGLSQDEMAQALRIIGVPEHQTRMRVHQLWHWLYVRGVSHFDEMLNISKPMRKMLK 87
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HFSI PEIV E+IS DGTRKWLLRFPA PVEIE VYIPE+ RGTLCVSSQVGC+
Sbjct: 88 DHFSIARPEIVAEQISQDGTRKWLLRFPASGTERPVEIEMVYIPEEGRGTLCVSSQVGCT 147
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLTAEEIL+Q+L+AR LGDFP G +IP GRKI+NIVMM
Sbjct: 148 LTCSFCHTGTQKLVRNLTAEEILVQLLVARDCLGDFPDKNTPNGAIIPIEGRKITNIVMM 207
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+ VKK+L IASD G S SKRRITLSTSG +P I R G+EIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGFSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA LI++
Sbjct: 268 VHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDAKKLIQL 327
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADLINKAGYASPIRMPRGRDILAACGQL 387
Query: 366 KSLSKRIPKVPRQEMQ 381
KS SKR+ K R ++
Sbjct: 388 KSASKRLCKSERMRLE 403
>gi|260574031|ref|ZP_05842036.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2]
gi|259023497|gb|EEW26788.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2]
Length = 429
Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats.
Identities = 199/379 (52%), Positives = 267/379 (70%), Gaps = 10/379 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +++G+ R++L AL+ G P+R +MR Q+W+W+Y G RDF MS+++++ R L
Sbjct: 23 KINIVGLTRDQLHAALVAAGTPERQAKMRVGQVWQWVYHWGKRDFALMSNLAKDYRAFLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I P++V ++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+
Sbjct: 83 EHFVIELPQVVTRQLSDDGTRKYLVRI-----AGGHEVEVVYIPEDGRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTC+FC+TGTQ LVRNLTA EI+ QV+LAR LG++P R ISN+V+M
Sbjct: 138 LTCTFCHTGTQVLVRNLTAAEIVGQVMLARDDLGEWPVQ-----GAPKDETRLISNVVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ + D+ G++ +RRITLSTSG VP IAR EIG +LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDAMKVVMDNEGIALGRRRITLSTSGVVPEIARTAREIGCLLAVSLHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ LVPINRK+ + L+D R YPGL+N+ RITFEYVML+G+NDS DA L+++
Sbjct: 253 TTDEVRDKLVPINRKWNIAALMDELRAYPGLTNSERITFEYVMLQGVNDSKEDAYRLVEL 312
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGIPAKINLIPFN WPG Y S I F++ I +GY+SPIRTPRG DI+AACGQL
Sbjct: 313 IKGIPAKINLIPFNEWPGAPYKRSSGNRIHAFADIIYNAGYASPIRTPRGEDIMAACGQL 372
Query: 366 KSLSKRIPKVPRQEMQITG 384
KS ++R K G
Sbjct: 373 KSATERARKSRAVIALEAG 391
>gi|91975189|ref|YP_567848.1| hypothetical protein RPD_0709 [Rhodopseudomonas palustris BisB5]
gi|123763075|sp|Q13D92|RLMN_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|91681645|gb|ABE37947.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 398
Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats.
Identities = 227/377 (60%), Positives = 281/377 (74%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R EL E L IG+ +MR Q+W W+Y+RG RDF M+++S+E+R L+
Sbjct: 22 KPSLIGLSRAELAERLGHIGVAPAQRKMRAQQLWNWMYLRGARDFSEMTNVSKEMRAQLS 81
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF++ PE+V E+IS DGTRKWLLR P+ E+E VYIPE RGTLCVSSQVGC
Sbjct: 82 DHFTVDRPEVVAEQISNDGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 141
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++NIVM
Sbjct: 142 TLNCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWVDRET------PNGNRLVTNIVM 195
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+ V+ +L I +D+ G+ S+RR+TLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 196 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIIRTGEEIGVMLAISLH 255
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++
Sbjct: 256 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 315
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ
Sbjct: 316 LLKGIPAKINLIPFNPWPGSAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 375
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ R ++
Sbjct: 376 LKSETEKLSVRERDALR 392
>gi|259417568|ref|ZP_05741487.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B]
gi|259346474|gb|EEW58288.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B]
Length = 397
Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats.
Identities = 196/381 (51%), Positives = 265/381 (69%), Gaps = 12/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R+ + E L++ G P++ +MR QIW+WIY G+R+F M+++++ R L
Sbjct: 23 KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGVRNFSEMTNLAKAYRAQLE 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V +++S DGTRK+L+R G E+E VYIPE RGTLC+SSQVGC+
Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVRIN-----GGHEVEVVYIPEDDRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N++R++LVPINR++ ++ L+ + +YP +SN+ RITFEYVML G+NDS DA L++
Sbjct: 253 TTNEVRDVLVPINRRWNIDELLQSLANYPKVSNSERITFEYVMLDGVNDSDEDAHRLLEH 312
Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG
Sbjct: 313 IKRYDIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QLKS ++R K +Q G
Sbjct: 373 QLKSATERARKSRKQIEAEAG 393
>gi|119713561|gb|ABL97613.1| radical SAM superfamily protein [uncultured marine bacterium
EB0_39F01]
Length = 390
Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats.
Identities = 206/376 (54%), Positives = 277/376 (73%), Gaps = 13/376 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q
Sbjct: 24 PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F+I PEIV +IS DGTRK+LLR G E+E VYIPEK RGTLC+SSQ+GC+L
Sbjct: 84 NFAITRPEIVTRQISKDGTRKYLLRVT-----GGHEVEAVYIPEKDRGTLCISSQIGCTL 138
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TC+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ R +SNIV+MG
Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKD--------AGQKRNVSNIVLMG 190
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA
Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++
Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AACGQLK
Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLK 370
Query: 367 SLSKRIPKVPRQEMQI 382
S ++R+ K +Q +
Sbjct: 371 SETQRVRKSAKQMAEE 386
>gi|114769816|ref|ZP_01447426.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255]
gi|114549521|gb|EAU52403.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255]
Length = 390
Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats.
Identities = 206/376 (54%), Positives = 277/376 (73%), Gaps = 13/376 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q
Sbjct: 24 PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F+I PEIV +IS DGTRK+LLR G E+E VYIPEK RGTLC+SSQ+GC+L
Sbjct: 84 NFAITRPEIVTRQISKDGTRKYLLRVT-----GGHEVEAVYIPEKDRGTLCISSQIGCTL 138
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TC+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ R +SNIV+MG
Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKD--------AGQKRNVSNIVLMG 190
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA
Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++
Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AACGQLK
Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLK 370
Query: 367 SLSKRIPKVPRQEMQI 382
S ++R+ K +Q +
Sbjct: 371 SETQRVRKSAKQMAEE 386
>gi|170742676|ref|YP_001771331.1| radical SAM protein [Methylobacterium sp. 4-46]
gi|205829810|sp|B0UQR1|RLMN_METS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|168196950|gb|ACA18897.1| radical SAM enzyme, Cfr family [Methylobacterium sp. 4-46]
Length = 431
Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats.
Identities = 215/381 (56%), Positives = 278/381 (72%), Gaps = 4/381 (1%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M + SL+G+ R L E L IG+P+R RMRT Q+W WI VRG F+ M+++ + +
Sbjct: 32 MVATGRPSLVGLTRGALRERLAAIGVPEREQRMRTGQLWHWINVRGAASFEAMTNVGKGL 91
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLC 117
+ L + +++ PE+V E++S DGTRKWLLR P EIE VYIP RGTLC
Sbjct: 92 KAQLEEAYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLC 151
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VSSQVGC+LTCSFC+TGTQ+LVRNL+A+EI Q+++AR LGD+PG +G +P G
Sbjct: 152 VSSQVGCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQVPPKGTFVPVDGS 211
Query: 178 K-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
+ +SNIV MGMGEPL N DNV ++ + SD+ GL S+RRIT+STSG VP R+G +
Sbjct: 212 RFVSNIVFMGMGEPLYNVDNVVDAVGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDAN 271
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
MLAISLHAV +DLR+ LVP+NRKYP+ L++ACR+YPG+SNARRITFEYVMLKG+NDS
Sbjct: 272 AMLAISLHAVRDDLRDELVPLNRKYPIRTLLEACRNYPGVSNARRITFEYVMLKGVNDSD 331
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+A L+++LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GY+SP+RTPRG
Sbjct: 332 SEARELVRLLKGIPAKINLIPFNPWPGSRYECSDWERIERFSEIVFNAGYASPVRTPRGR 391
Query: 357 DILAACGQLKSLSKRIPKVPR 377
DILAACGQLKS ++++ R
Sbjct: 392 DILAACGQLKSETEKLRARAR 412
>gi|205829854|sp|B1M1U6|RLMN_METRJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 424
Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats.
Identities = 214/383 (55%), Positives = 272/383 (71%), Gaps = 5/383 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ SL+G+ R+ L+ L+ +G+P+R RMR Q+W W+ RG DF M+++ + ++ L
Sbjct: 31 RPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQLA 90
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC---IGGPVEIETVYIPEKSRGTLCVSSQV 122
+HF++ PE+ ++S DGTRKWLLR EIE VYIP RGTLCVSSQV
Sbjct: 91 EHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQV 150
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI-EGMVIPSVGRKISN 181
GC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR LGD+PG + VGR ++N
Sbjct: 151 GCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVGRLVTN 210
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
IV MGMGEPL N D V ++ + SD GL S+RRIT+STSG VP I R+GE+ MLAI
Sbjct: 211 IVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAMLAI 270
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHAV +DLR+ LVP+NRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS DA
Sbjct: 271 SLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDADARE 330
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++LKGIPAKINLIPFNPWPG Y CSD I FSE + +GY+SP+RTPRG DILAA
Sbjct: 331 LVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDILAA 390
Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
CGQLKS ++++ R MQ G
Sbjct: 391 CGQLKSETEKLRARAR-LMQEEG 412
>gi|296446886|ref|ZP_06888822.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b]
gi|296255561|gb|EFH02652.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b]
Length = 386
Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats.
Identities = 229/379 (60%), Positives = 279/379 (73%), Gaps = 3/379 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL G R EL EAL I P+R +RMR +Q+W WIY RG RDF MS++S+ VR L
Sbjct: 8 KPSLAGATRAELAEALRAIDTPEREIRMRVAQLWHWIYFRGARDFADMSNVSKIVRGKLA 67
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F + PE+V E++S DGTRKWLLR P EIE VYIPE RGTLCVSSQVGC
Sbjct: 68 ERFGLALPEVVAEQVSTDGTRKWLLRLDPVDAADKGAEIECVYIPESDRGTLCVSSQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182
+L CSFC+TGTQKLVRNL+ EI+ Q+L+AR LGDFPG E ++PS R +SNI
Sbjct: 128 TLNCSFCHTGTQKLVRNLSTREIIAQLLVARMRLGDFPGLEPPTDGLVPSGPDVRAVSNI 187
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N + V+ ++ I SD GLS SKRRIT+STSG VP I R+G E G MLAIS
Sbjct: 188 VFMGMGEPLYNLEQVENAIEILSDGDGLSLSKRRITVSTSGVVPQIERLGAECGPMLAIS 247
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LRN LVP+N+KYP+ L+DACR YPG SNARRITFEYVMLKG+NDSP +A L
Sbjct: 248 LHAVRDELRNELVPLNKKYPIRQLLDACRDYPGASNARRITFEYVMLKGVNDSPAEAREL 307
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++LKGIPAKINLIPFNPWPG Y CSD + I FS+ + +GY+SP+RTPRG DILAAC
Sbjct: 308 VRLLKGIPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAAC 367
Query: 363 GQLKSLSKRIPKVPRQEMQ 381
GQLKS ++++ R ++
Sbjct: 368 GQLKSETEKLRARARLAVE 386
>gi|27375636|ref|NP_767165.1| hypothetical protein bll0525 [Bradyrhizobium japonicum USDA 110]
gi|81740269|sp|Q89X03|RLMN_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|27348773|dbj|BAC45790.1| bll0525 [Bradyrhizobium japonicum USDA 110]
Length = 400
Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats.
Identities = 228/377 (60%), Positives = 279/377 (74%), Gaps = 9/377 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R EL + L +IG+ +MR Q+W W+Y RG ++F M+ IS+ +R L
Sbjct: 26 KPSLIGLSRNELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFDEMTSISKGIRAELA 85
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPAR-CIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
QHF++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC
Sbjct: 86 QHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVEKAHEVECVYIPETDRGTLCVSSQVGC 145
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ ED R+++NIVM
Sbjct: 146 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADREDGT--------RRVTNIVM 197
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I D+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 198 MGMGEPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLH 257
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K
Sbjct: 258 AVRDELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 317
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGI AKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ
Sbjct: 318 LLKGIHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 377
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ RQ ++
Sbjct: 378 LKSETEKLSARERQTLR 394
>gi|170747554|ref|YP_001753814.1| radical SAM protein [Methylobacterium radiotolerans JCM 2831]
gi|170654076|gb|ACB23131.1| radical SAM enzyme, Cfr family [Methylobacterium radiotolerans JCM
2831]
Length = 430
Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats.
Identities = 214/383 (55%), Positives = 272/383 (71%), Gaps = 5/383 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ SL+G+ R+ L+ L+ +G+P+R RMR Q+W W+ RG DF M+++ + ++ L
Sbjct: 37 RPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQLA 96
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC---IGGPVEIETVYIPEKSRGTLCVSSQV 122
+HF++ PE+ ++S DGTRKWLLR EIE VYIP RGTLCVSSQV
Sbjct: 97 EHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQV 156
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI-EGMVIPSVGRKISN 181
GC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR LGD+PG + VGR ++N
Sbjct: 157 GCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVGRLVTN 216
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
IV MGMGEPL N D V ++ + SD GL S+RRIT+STSG VP I R+GE+ MLAI
Sbjct: 217 IVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAMLAI 276
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHAV +DLR+ LVP+NRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS DA
Sbjct: 277 SLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDADARE 336
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++LKGIPAKINLIPFNPWPG Y CSD I FSE + +GY+SP+RTPRG DILAA
Sbjct: 337 LVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDILAA 396
Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
CGQLKS ++++ R MQ G
Sbjct: 397 CGQLKSETEKLRARAR-LMQEEG 418
>gi|83952609|ref|ZP_00961339.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
ISM]
gi|83835744|gb|EAP75043.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
ISM]
Length = 395
Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats.
Identities = 202/379 (53%), Positives = 269/379 (70%), Gaps = 12/379 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+++ + L+ G P++ +MR SQIW+WIY G+RDF M+++++ R L +
Sbjct: 23 VNLVGLTRDKMRDVLIAHGTPEKQAKMRVSQIWQWIYQWGVRDFDAMTNLAKAYRAELAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I PE+V +++S DGTRK+L+R G E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 83 KFVIEIPEVVSKQVSSDGTRKYLVRI-----AGGHEVEVVYIPEEDRGTLCVSSQVGCTL 137
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMMARDDLGEWP-----EQGAPKDETRLLSNIVLMG 192
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV+ ++ IA D+ G+ S+RRITLSTSG VP IAR +EIG LAIS HA
Sbjct: 193 MGEPLYNFDNVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHAT 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++ RN LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+ND+ DA LI+++
Sbjct: 253 TDETRNKLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDTDDDARRLIQMI 312
Query: 307 KG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K IPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQ
Sbjct: 313 KDHAIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQ 372
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS ++R K R+ T
Sbjct: 373 LKSATERARKSRREIEAET 391
>gi|83594658|ref|YP_428410.1| hypothetical protein Rru_A3329 [Rhodospirillum rubrum ATCC 11170]
gi|123753053|sp|Q2RP22|RLMN_RHORT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|83577572|gb|ABC24123.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length = 428
Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats.
Identities = 197/378 (52%), Positives = 250/378 (66%), Gaps = 17/378 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ REE+ L +G R Q+W W+Y RG DF M+ + +R L +
Sbjct: 48 VNLVGLSREEIAALLRDMG----EKPFRAKQLWHWVYHRGETDFSAMTTLGTPLRAKLAE 103
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ P +V E+ S DGTRKWLLRFP E ETVYIPE RG LCVSSQVGC+L
Sbjct: 104 TCVVARPHVVREQRSEDGTRKWLLRFP-----DGNEAETVYIPEDDRGALCVSSQVGCTL 158
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TC FC+TGTQ LVRNLTA EI+ Q + AR G++P D R++SNIV+MG
Sbjct: 159 TCRFCHTGTQLLVRNLTAHEIVGQFMAARDAYGEWPSPTD--------ESRQLSNIVLMG 210
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+DNV K++ I D+ G++ S+RRITLSTSG VP I R G E+GV LA+SLHA
Sbjct: 211 MGEPLYNYDNVAKAIGILLDNEGIAVSRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAA 270
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++R+ ++PINRKYPL L+ ACR YPG SNARRITFEYVMLKG+NDS DA LIK++
Sbjct: 271 RDEIRDEIMPINRKYPLAELMAACREYPGASNARRITFEYVMLKGVNDSEADARALIKLV 330
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+G+P K NLIPFNPWPG + C + I F+ + +GY++PIR PRG DILAACGQL+
Sbjct: 331 EGVPCKFNLIPFNPWPGSGFECPPIRHIERFANILFEAGYTAPIRMPRGRDILAACGQLR 390
Query: 367 SLSKRIPKVPRQEMQITG 384
S S R + G
Sbjct: 391 SDSLRERASLHKARLAAG 408
>gi|300024847|ref|YP_003757458.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC
51888]
gi|299526668|gb|ADJ25137.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC
51888]
Length = 401
Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats.
Identities = 226/376 (60%), Positives = 288/376 (76%), Gaps = 2/376 (0%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SL G+ R L+EAL G+P++ + MR +Q+W WIYVRGI F+ M+D+S+++R L
Sbjct: 20 EKRSLAGLTRARLKEALAAGGVPEKQLNMRVNQLWSWIYVRGITRFEDMTDVSKDLRRQL 79
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVG 123
+ +++ PEI+ E+IS DGTRKWLLR R E+ETVYIPE RGTLC+SSQVG
Sbjct: 80 DAIYTLDRPEIISEQISVDGTRKWLLRLAKRGHEARPPEVETVYIPESDRGTLCISSQVG 139
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE-GMVIPSVGRKISNI 182
C+LTCSFC+TGTQ+LVRNL A+EI+ Q++LAR +GD+PG + + G ++P+ RKI+N+
Sbjct: 140 CTLTCSFCHTGTQRLVRNLEAQEIVGQIMLARDRIGDWPGAKGPDDGRLLPASERKITNV 199
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V+MGMGEPL NFDNVK ++ +ASD GL+ SKRRITLSTSG VP I R GEE MLAIS
Sbjct: 200 VLMGMGEPLYNFDNVKAAMEVASDGDGLALSKRRITLSTSGVVPEIPRWGEEADTMLAIS 259
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ LR+ LVPINRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS +A L
Sbjct: 260 LHATNDALRDELVPINRKYPIAELMQACRDYPGLSNARRITFEYVMLKGVNDSLAEARAL 319
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K+L GIPAKINLIPFNPWP Y CSD + I F+E + R+GY+SP+RTPRG DILAAC
Sbjct: 320 VKLLAGIPAKINLIPFNPWPNTRYECSDWETIERFAEVVNRAGYASPVRTPRGRDILAAC 379
Query: 363 GQLKSLSKRIPKVPRQ 378
GQL+S S R+ R+
Sbjct: 380 GQLRSESLRLSASERR 395
>gi|92119085|ref|YP_578814.1| hypothetical protein Nham_3626 [Nitrobacter hamburgensis X14]
gi|123386907|sp|Q1QHE3|RLMN_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|91801979|gb|ABE64354.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter hamburgensis
X14]
Length = 397
Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats.
Identities = 224/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R E+ E L IG+ RMR Q+W W+YVRG + M+++S+++R L
Sbjct: 21 KPSLIGLSRAEISERLAAIGVAPAQRRMRVQQLWHWMYVRGAKTVGEMTNVSKDMRAELE 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVGC 124
+H ++ PE+V E+IS DGTRKWLLR P+ P E+E VYIPE RGTLCVSSQVGC
Sbjct: 81 KHVTVDRPEVVAEQISNDGTRKWLLRLPSGNTLEKPHEVECVYIPETDRGTLCVSSQVGC 140
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM
Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 194
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ +L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 195 MGMGEPLYNFDAVRDALLIVADNEGIGISKRRITLSTSGVVPNIVRTGEEIGVMLAISLH 254
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LRN LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K
Sbjct: 255 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDAKLLVK 314
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGI AKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 315 LLKGIHAKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ RQ ++
Sbjct: 375 LKSETEKLSARERQALR 391
>gi|182677752|ref|YP_001831898.1| radical SAM protein [Beijerinckia indica subsp. indica ATCC 9039]
gi|205829669|sp|B2IGZ5|RLMN_BEII9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|182633635|gb|ACB94409.1| radical SAM enzyme, Cfr family [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 391
Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats.
Identities = 222/373 (59%), Positives = 284/373 (76%), Gaps = 2/373 (0%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
SL+G REEL +AL IG+P+R +RMRT+Q+W WIY GIR F M ++ + +R L
Sbjct: 14 PSLLGATREELGDALAAIGVPEREIRMRTAQVWHWIYFHGIRSFDTMLNVGKGLRTTLAA 73
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
H+S+ P++V E++S DGTRKWL+R P E+E VYIPE RGTLC+SSQVGC+
Sbjct: 74 HYSLERPQVVSEQVSVDGTRKWLIRLPPVDAQDRGAEVECVYIPESDRGTLCISSQVGCT 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
LTCSFC+TGTQKLVRNL+A EI+ Q+++AR LGDFPG + ++P+ G R I+NIV
Sbjct: 134 LTCSFCHTGTQKLVRNLSAREIVSQLVVAREKLGDFPGLVPPKDGLLPTEGNRPITNIVF 193
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV+K++S+ SD GLS S+RRIT+ST+G VP + +G E G MLA+SLH
Sbjct: 194 MGMGEPLYNFDNVRKAVSVLSDGEGLSLSRRRITVSTAGVVPQMEALGREAGSMLAVSLH 253
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV +DLR+ LVP+N+KYP++ L++ACR YPG SNARRITFEYVMLK INDSP +A LI+
Sbjct: 254 AVRDDLRDKLVPLNKKYPIKTLLEACRTYPGASNARRITFEYVMLKDINDSPAEARELIR 313
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG Y CSD I FS+ + +GY+SP+RTPRG DILAACGQ
Sbjct: 314 LLKGIPAKINLIPFNPWPGAPYDCSDWDRIERFSDIVFNAGYASPVRTPRGRDILAACGQ 373
Query: 365 LKSLSKRIPKVPR 377
LKS ++++ R
Sbjct: 374 LKSETEKLRARAR 386
>gi|312114859|ref|YP_004012455.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC
17100]
gi|311219988|gb|ADP71356.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC
17100]
Length = 412
Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats.
Identities = 226/375 (60%), Positives = 285/375 (76%), Gaps = 2/375 (0%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL GM R EL AL + G+P +MR +Q+W W Y RG DF +++I++ +R L+
Sbjct: 29 KPSLAGMTRPELMAALAEAGVPANQAKMRAAQLWNWTYARGATDFMALTNIAKSLRAELD 88
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
F++ PEI E+IS DGTRKWLLR P+ P EIETVYIPE RGTLC+SSQVGC
Sbjct: 89 ARFTLARPEIAAEQISEDGTRKWLLRLAPSHPAERPPEIETVYIPEPDRGTLCISSQVGC 148
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI-EGMVIPSVGRKISNIV 183
+L CSFC+TGTQ+LVRNLTA EI+ Q+L+AR +GD+P + + IP RKI+NIV
Sbjct: 149 TLNCSFCHTGTQRLVRNLTAAEIVGQILVARDRVGDWPDADGPADRHGIPESERKITNIV 208
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
+MGMGEPL NF+NVK ++ +A+D+ LSFSKRR+TLSTSG VP + R GEE+GVMLAISL
Sbjct: 209 LMGMGEPLYNFENVKAAVGLATDADALSFSKRRLTLSTSGVVPMMHRAGEEMGVMLAISL 268
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HAV +DLR+ LVPINRKYPL+ L+ ACR YPGLSNARR+TFEYVMLKG+NDS +A L+
Sbjct: 269 HAVRDDLRDELVPINRKYPLKELLAACRAYPGLSNARRMTFEYVMLKGVNDSVAEAKELV 328
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKGIP+KINLIPFNPWPG Y CSD I F++ + R+GY+SPIRTPRG DI+AACG
Sbjct: 329 RLLKGIPSKINLIPFNPWPGTAYECSDWAQIERFADVVNRAGYASPIRTPRGRDIMAACG 388
Query: 364 QLKSLSKRIPKVPRQ 378
QLKS S+++ R+
Sbjct: 389 QLKSASEKLRASARR 403
>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
gi|123753570|sp|Q2SDW1|RLMN_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
Length = 378
Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats.
Identities = 165/374 (44%), Positives = 230/374 (61%), Gaps = 20/374 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+GM R +LE +G + R +Q+ KW+Y G+ DF M+++S+ +R L
Sbjct: 7 KINLLGMNRSDLETFFESLG----EKKFRATQLMKWMYHLGVSDFDLMTNMSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + PE++ E IS DGTRKW++R G IETVYIP+ RGTLCVSSQ+GCS
Sbjct: 63 EVAEVSVPEVIYEDISADGTRKWVMRL-----AGGNSIETVYIPDNGRGTLCVSSQIGCS 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q RNL++ EI+ Q+ +A GD+ S R ++NIV M
Sbjct: 118 LDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDL----------SKERYVTNIVFM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D G SKRR+T+STSG VP + ++G+ V LAISLHA
Sbjct: 168 GMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDVTDVSLAISLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLIK 304
+N LR++LVP+N+KYP+E L+ AC Y LS+ RRIT EY ++ G+NDS A L
Sbjct: 228 PNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRD 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ +P KINLIPFNP+P Y + + F + + +GY + +RT RG DI AACGQ
Sbjct: 288 LLRDLPCKINLIPFNPFPNSGYERPSRNATLRFQKVLSDAGYVATVRTTRGDDIDAACGQ 347
Query: 365 LKSLSKRIPKVPRQ 378
L + + ++
Sbjct: 348 LVGRVEDRTRRSQK 361
>gi|84500532|ref|ZP_00998781.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597]
gi|84391485|gb|EAQ03817.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597]
Length = 398
Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats.
Identities = 201/370 (54%), Positives = 274/370 (74%), Gaps = 10/370 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +++G+ RE L +AL+ +G P++ RMR +Q+W+WIY G+RDF M++++++ R L
Sbjct: 24 KPNIVGLTREALRQALIDMGTPEKQARMRVNQVWQWIYHWGVRDFSQMTNLARDYRGKLT 83
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V +++S DGTRK+L+R G E+ETVYIPE RGTLC+SSQVGC+
Sbjct: 84 ETFRIDLPEMVSKQVSADGTRKYLMRI-----AGGHEVETVYIPEADRGTLCISSQVGCT 138
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQ+LVRNL+A+EI+ Q+++AR LG++P R +SNIV+M
Sbjct: 139 LTCSFCHTGTQRLVRNLSADEIVGQIMVARDDLGEWPVP-----GAPKREERLLSNIVLM 193
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+S HA
Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARCAEEIGCLLAVSFHA 253
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ LVPIN+++ +E L+ A R YP LSN+ RITFEYVMLK +NDS DA L+K+
Sbjct: 254 TTDEVRDRLVPINKRWNIETLLTALRDYPRLSNSERITFEYVMLKDVNDSDADARRLVKL 313
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAKINLIPFN WPG Y SD I +F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 ISGIPAKINLIPFNEWPGAPYERSDWSRIESFADIVHKAGYASPIRTPRGEDIMAACGQL 373
Query: 366 KSLSKRIPKV 375
KS ++R K
Sbjct: 374 KSATERERKS 383
>gi|75676990|ref|YP_319411.1| hypothetical protein Nwi_2806 [Nitrobacter winogradskyi Nb-255]
gi|74421860|gb|ABA06059.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter winogradskyi
Nb-255]
Length = 427
Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats.
Identities = 226/377 (59%), Positives = 276/377 (73%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R E+ E L IGIP+ RMR Q+W W+YVRG R F M+ +S+++R L
Sbjct: 51 KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 110
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVGC 124
+H ++ PE+V E+IS DGTRKWLLR P+ P E+E VYIPE RGTLCVSSQVGC
Sbjct: 111 KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 170
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM
Sbjct: 171 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 224
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 225 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 284
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K
Sbjct: 285 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 344
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L GI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 345 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 404
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ RQ ++
Sbjct: 405 LKSETEKLSARERQALR 421
>gi|205829850|sp|Q3SNT2|RLMN_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 397
Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats.
Identities = 226/377 (59%), Positives = 276/377 (73%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R E+ E L IGIP+ RMR Q+W W+YVRG R F M+ +S+++R L
Sbjct: 21 KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVGC 124
+H ++ PE+V E+IS DGTRKWLLR P+ P E+E VYIPE RGTLCVSSQVGC
Sbjct: 81 KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 140
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM
Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 194
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 195 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 254
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LR+ LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K
Sbjct: 255 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 314
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L GI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 315 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ RQ ++
Sbjct: 375 LKSETEKLSARERQALR 391
>gi|85714487|ref|ZP_01045475.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A]
gi|85698934|gb|EAQ36803.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A]
Length = 423
Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats.
Identities = 224/377 (59%), Positives = 276/377 (73%), Gaps = 7/377 (1%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIG+ R E+ E L IG+P+ RMR Q+W W+YVRG + F M+ +S+++ L
Sbjct: 47 KPSLIGLSRAEIAERLAAIGVPREQRRMRVQQLWHWMYVRGAQSFSEMTSVSKDMHTELE 106
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVGC 124
+H ++ PE+V E+IS DGTRKWLLR P+ P E+E VYIPE RGTLC+SSQVGC
Sbjct: 107 KHVTVDRPEVVAEQISSDGTRKWLLRLPSGNDLEKPHEVECVYIPETDRGTLCISSQVGC 166
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM
Sbjct: 167 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 220
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 221 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 280
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV ++LRN LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K
Sbjct: 281 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLEDAKRLVK 340
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ
Sbjct: 341 LLKGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 400
Query: 365 LKSLSKRIPKVPRQEMQ 381
LKS ++++ RQ ++
Sbjct: 401 LKSETEKLSARERQALR 417
>gi|217979092|ref|YP_002363239.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2]
gi|254807188|sp|B8EIR0|RLMN_METSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|217504468|gb|ACK51877.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2]
Length = 399
Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats.
Identities = 219/370 (59%), Positives = 278/370 (75%), Gaps = 1/370 (0%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
SL G+ R+ L ALL+IG P+R +RMRT+Q+W WIY RG F M ++S+ +R L +
Sbjct: 23 RSLAGLTRDGLAAALLEIGAPERELRMRTAQLWHWIYHRGAGSFDDMLNVSKVLRTQLAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F++ P+IV E++S DGTRKWL+RF P+ E+E VYIP+ RGTLCVSSQVGC+
Sbjct: 83 KFTLARPQIVTEQVSTDGTRKWLIRFAPSAESDRLAEVECVYIPDVDRGTLCVSSQVGCT 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQK VRNLTA+EI+ Q+++AR +GDFPG +G S R ++NIV M
Sbjct: 143 LTCSFCHTGTQKFVRNLTAQEIIAQLIIARDRIGDFPGLAPRDGKGSNSGSRLVTNIVFM 202
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N DNV ++S+ SD GLS S+RRIT+ST+G VP + +GE+ G MLAISLHA
Sbjct: 203 GMGEPLYNLDNVVDAVSVLSDGDGLSLSRRRITVSTAGVVPKLPELGEKTGAMLAISLHA 262
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LRN LVP+N+KYP+ L+ ACR YPG SNARRITFEYVMLKGINDSP DA L+++
Sbjct: 263 VRDELRNTLVPLNKKYPIAALLQACRDYPGASNARRITFEYVMLKGINDSPSDARELVRL 322
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGIPAKINLIPFNPWPG Y CSD I FS+ + +GY+SP+RTPRG DILAACGQL
Sbjct: 323 LKGIPAKINLIPFNPWPGTAYECSDDAVIEKFSDIVFNAGYASPVRTPRGRDILAACGQL 382
Query: 366 KSLSKRIPKV 375
KS ++++
Sbjct: 383 KSETEKLRAR 392
>gi|161170314|gb|ABX59284.1| predicted FeS cluster redox protein [uncultured marine bacterium
EB000_55B11]
gi|297183841|gb|ADI19964.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
Length = 390
Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats.
Identities = 205/376 (54%), Positives = 276/376 (73%), Gaps = 13/376 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q
Sbjct: 24 PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F+I PEIV +IS DGTRK+LLR G E+E VYIPEK RGTLC+SSQ+GC+L
Sbjct: 84 NFAITRPEIVTRQISKDGTRKYLLRVT-----GGHEVEAVYIPEKDRGTLCISSQIGCTL 138
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TC+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ R +SNIV+MG
Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKD--------AGQKRNVSNIVLMG 190
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA
Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++
Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AA GQLK
Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAAXGQLK 370
Query: 367 SLSKRIPKVPRQEMQI 382
S ++R+ K +Q +
Sbjct: 371 SETQRVRKSAKQMAEE 386
>gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 376
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 174/385 (45%), Positives = 230/385 (59%), Gaps = 16/385 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K +L+GM R++LE +G R Q+ KWI+ + DFQ M+D+S+ +
Sbjct: 1 MTDSPKTNLLGMTRQQLEGFFTAMG----EKPFRAVQVLKWIHQHWVEDFQDMTDLSKAL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L Q I PE+V ++ S DGT KWLLR IETV+IPEK RGTLCVSS
Sbjct: 57 RERLAQVAEIRAPEVVYDQASADGTHKWLLRL-----DDGNCIETVFIPEKDRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C+FC T Q RNL++ EI+ Q+ LA L + + R +S
Sbjct: 112 QVGCALDCTFCSTARQGFNRNLSSAEIVGQLWLANRRLA------PERTVAGKAPERVVS 165
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V+MGMGEPL NFDNV ++ + D SKRR+TLSTSG VP + R+ E + V LA
Sbjct: 166 NVVLMGMGEPLLNFDNVVDAMRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETLDVALA 225
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDA 299
+SLHA ++ LR+ LVPINRKYP+ L+DACR Y + +RITFEYVML+G+NDSP A
Sbjct: 226 VSLHAPNDALRDELVPINRKYPIAELLDACRRYVREERHHQRITFEYVMLEGVNDSPEHA 285
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
LI +L+ +P KINLIPFNP+P Y S I F E + +GY++ R RG DI
Sbjct: 286 RQLIALLRDVPCKINLIPFNPFPETRYRRSGDAAIRRFQEMLANAGYTTITRRTRGDDID 345
Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384
AACGQL + + ++ G
Sbjct: 346 AACGQLVGKVADRSRRALRFARLEG 370
>gi|315497788|ref|YP_004086592.1| radical sam enzyme, cfr family [Asticcacaulis excentricus CB 48]
gi|315415800|gb|ADU12441.1| radical SAM enzyme, Cfr family [Asticcacaulis excentricus CB 48]
Length = 411
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 205/381 (53%), Positives = 276/381 (72%), Gaps = 16/381 (4%)
Query: 6 KESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K ++ G+ R+ L AL + G+ +R +MR QIW+W++ G DF M+DI ++ R L
Sbjct: 16 KVNITGLTRDGLIAALKESGVVEERKAKMRAQQIWRWVHHYGFTDFDKMTDIGKDQRGPL 75
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVG 123
++ F++ PE+V+ ++S DGTRKWL+R +E+ETVYIP+ R G LCVSSQVG
Sbjct: 76 SEKFTLARPEVVERQVSKDGTRKWLIRM-----APGIEVETVYIPDVGRSGALCVSSQVG 130
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L CSFC+TGTQ+LVRNLTA EI+ QV +AR LG++P P R++SNIV
Sbjct: 131 CTLNCSFCHTGTQRLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNIV 181
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N DNV ++ I SD+ G++ S+RRIT+STSG VP + +G+ MLAISL
Sbjct: 182 FMGMGEPLYNLDNVADAIDIISDNEGIAISRRRITVSTSGVVPELDALGKRTAAMLAISL 241
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR++LVPIN+KYPL+ L+ A R YP LSNARR+TFEYVMLKG+NDSP +A LI
Sbjct: 242 HATNDELRDVLVPINKKYPLKDLMAAIRAYPDLSNARRVTFEYVMLKGVNDSPAEARELI 301
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K++KGIPAKINLIPFNPWPG +Y CSD + I F+ + ++GY+SPIRTPRG DILAACG
Sbjct: 302 KLIKGIPAKINLIPFNPWPGTDYQCSDWRTIEAFAAILNKAGYASPIRTPRGRDILAACG 361
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QLKS S+++ ++ Q+ G
Sbjct: 362 QLKSESEKVRASALRKAQVEG 382
>gi|85708979|ref|ZP_01040045.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1]
gi|85690513|gb|EAQ30516.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1]
Length = 416
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 194/375 (51%), Positives = 258/375 (68%), Gaps = 13/375 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ LIG+ R + E + G+ +R ++R Q++ W+Y RG+ DF+ M+DIS+ +R L
Sbjct: 29 RIDLIGLPRPRIRELFAEAGLDERQAKLRAKQVFHWLYHRGVTDFEAMTDISKTMRPWLA 88
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I P IV+ + S DGTRKWLL+ + E V+IP+ RGTLCVSSQVGC+
Sbjct: 89 ERFVIGRPNIVEAQHSSDGTRKWLLQT-----DDGHDFEMVFIPDADRGTLCVSSQVGCT 143
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179
L C+FC+TGT +LVRNLT EI+ QV+LAR LG++P E + + GR +
Sbjct: 144 LNCTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGVMDGLDEAEDVGHYTADGRLL 203
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+NIVMMGMGEPL NFD+V+ +L++ D GL+ SKRRITLSTSG VP + R GEEIGV L
Sbjct: 204 TNIVMMGMGEPLYNFDHVRDALNLVMDGDGLALSKRRITLSTSGVVPAMERCGEEIGVNL 263
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHAV+ D+R+ +VP+N+KY +E L+ AC YPG SNARRITFEYVMLK NDS DA
Sbjct: 264 AVSLHAVTKDVRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDSDEDA 323
Query: 300 LNLIKILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L+++L+ PAK+NLIPFNPWPG Y CS + I FS + G S+P+RTPRG D
Sbjct: 324 RELVRLLRKFDLPAKVNLIPFNPWPGANYECSTPERIKAFSNIVFEGGISAPVRTPRGRD 383
Query: 358 ILAACGQLKSLSKRI 372
I AACGQLK+ +++
Sbjct: 384 IDAACGQLKTAAQKK 398
>gi|197106949|ref|YP_002132326.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum
HLK1]
gi|254807192|sp|B4RCA4|RLMN_PHEZH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|196480369|gb|ACG79897.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum
HLK1]
Length = 385
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 201/382 (52%), Positives = 274/382 (71%), Gaps = 16/382 (4%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +L GM R EL L+++G+ + +MR SQ+W+W++ G+ DF+ M+D+++E R
Sbjct: 18 SRPNLSGMTRAELAACLVELGVVRPEKAKMRASQLWRWMHHYGVTDFEKMTDVAKETRAA 77
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQV 122
L + +I P++V+ ++S DGTRKWL+R +E+ETVYIP+ R G LCVSSQV
Sbjct: 78 LAEVCAISRPQVVERQVSKDGTRKWLIRM-----APGIEVETVYIPDVGRAGALCVSSQV 132
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC+TGTQ LVRNLTA EI+ QV +AR LG++P P R++SNI
Sbjct: 133 GCTLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNI 183
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N DNV ++ I +D+ G++ S+RRIT+STSG VP +A +GE MLAIS
Sbjct: 184 VFMGMGEPLYNLDNVAAAIDIIADNEGIAISRRRITVSTSGVVPELAALGERTQAMLAIS 243
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++LR LVP+NRKYP+ L+ A R YPGLSN++R+TFEYVMLKG+NDSP +A L
Sbjct: 244 LHATNDELREKLVPLNRKYPIAELMAAIRAYPGLSNSKRVTFEYVMLKGVNDSPAEAKAL 303
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +LKG+PAKINLIPFNPWPG +Y CSD I F+ + R+GY+SPIRTPRG DILAAC
Sbjct: 304 VNLLKGVPAKINLIPFNPWPGSQYECSDWGTIERFAAVLNRAGYASPIRTPRGRDILAAC 363
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQLKS S+++ R+++ G
Sbjct: 364 GQLKSESEKLRASARRKLAAGG 385
>gi|87199457|ref|YP_496714.1| hypothetical protein Saro_1436 [Novosphingobium aromaticivorans DSM
12444]
gi|123749853|sp|Q2G8E3|RLMN_NOVAD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|87135138|gb|ABD25880.1| 23S rRNA m(2)A-2503 methyltransferase [Novosphingobium
aromaticivorans DSM 12444]
Length = 429
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 197/394 (50%), Positives = 263/394 (66%), Gaps = 21/394 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ LIG+ R+++ E + G+ + ++R Q++ W+Y RG+ DF M+DI++ +R L
Sbjct: 35 RIDLIGLPRKQIAELFAQAGLDAKAAKLRAKQVFHWLYHRGVTDFDAMTDIAKTMRPWLA 94
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PEIV+ ++S DGTRKWLLR + + E V+IP+ RGTLCVSSQVGC+
Sbjct: 95 ERFVIGRPEIVEAQVSTDGTRKWLLRTADK-----HDFEMVFIPDADRGTLCVSSQVGCT 149
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--------------EDIEGMV 171
L C FC+TGT +LVRNLT EI+ QV+LAR LG++P +D +
Sbjct: 150 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGANDSRVATMAGLDFDDEDEGS 209
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
S GR ++NIVMMGMGEPL NFDNV+ +L + D GL+ SKRRITLSTSG VP + R
Sbjct: 210 YTSDGRLLTNIVMMGMGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTSGVVPMMERC 269
Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
GEEIGV LA+SLHAV+ D+R+ +VPINRKY +E L+ AC YPG SNARRITFEYVMLK
Sbjct: 270 GEEIGVNLAVSLHAVTKDVRDEIVPINRKYGIEELLQACADYPGASNARRITFEYVMLKD 329
Query: 292 INDSPRDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
NDS A L+++++ +PAK+NLIPFNPWPG Y CS I +F+ + +G S+P
Sbjct: 330 KNDSDDHARELVRLIRQYKLPAKVNLIPFNPWPGAPYECSSPDRIKSFANIVFEAGISAP 389
Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
+RTPRG DI AACGQLK+ S+R + +
Sbjct: 390 VRTPRGRDIDAACGQLKTASERKSRAELDRLAEE 423
>gi|149184387|ref|ZP_01862705.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21]
gi|148831707|gb|EDL50140.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21]
Length = 421
Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats.
Identities = 193/387 (49%), Positives = 259/387 (66%), Gaps = 18/387 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ LIG+ +E + E G+ + ++R Q++ W+Y RG+ DF+ M+DI++ +R L
Sbjct: 29 RVDLIGLPKERIRELFETAGLQPKQAKLRAKQVFHWLYHRGVTDFEAMTDIAKTMRPWLA 88
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V+ + S DGTRKWLL+ E E V+IP+ RGTLCVSSQVGC+
Sbjct: 89 ERFVIGRPEVVEAQHSTDGTRKWLLKT-----ADGHEFEMVFIPDADRGTLCVSSQVGCT 143
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-----------EDIEGMVIPS 174
L C FC+TGT KLVRNLT EI+ QV+LAR LG++P + + S
Sbjct: 144 LNCRFCHTGTMKLVRNLTPGEIVGQVMLARDALGEWPKGNMNFDYGADLDDAEDEGHYTS 203
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
GR ++NIVMMGMGEPL NFDNVK +L + D GL+ SKRRITLSTSG VP + R GEE
Sbjct: 204 DGRLLTNIVMMGMGEPLYNFDNVKGALKLVMDGDGLALSKRRITLSTSGVVPAMERCGEE 263
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
IGV LA+SLHAV+ ++R+ +VP+N+KY +E L++AC YPG SNARRITFEYVMLK ND
Sbjct: 264 IGVNLAVSLHAVTKEIRDEIVPLNKKYGIEELLEACAAYPGASNARRITFEYVMLKDKND 323
Query: 295 SPRDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
+ A L+++LK +PAK+NLIPFNPWPG Y S + + FS+ + G S+P+RT
Sbjct: 324 TDEHARELVRLLKHYKLPAKVNLIPFNPWPGAAYDTSTPERVKRFSDIVFEGGISAPVRT 383
Query: 353 PRGLDILAACGQLKSLSKRIPKVPRQE 379
PRG DI AACGQLK+ +++ + R
Sbjct: 384 PRGRDIDAACGQLKTAAEKKSRAQRDR 410
>gi|326387224|ref|ZP_08208834.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM
19370]
gi|326208405|gb|EGD59212.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM
19370]
Length = 421
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 196/393 (49%), Positives = 258/393 (65%), Gaps = 20/393 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ R+ + E G+ R ++R Q++ WIY RG+ DF M+DI++ +R L+
Sbjct: 28 RIDLVGLPRKAITELFATAGLDARAAKLRAKQVFHWIYHRGVTDFDAMTDIAKTMRPWLS 87
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I P IV + S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+
Sbjct: 88 ERFVIDRPSIVTAQASSDGTRKWLLRT-----ADNHDFEMVFIPDADRGTLCVSSQVGCT 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-------------EDIEGMVI 172
L C FC+TGT +LVRNLT EI+ QV+LAR LG++P +
Sbjct: 143 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGGGTMAGLDEDPEDDPEGAQAY 202
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
+ GR ++NIVMMGMGEPL NFDNV+ +L I D GL+ SKRRITLSTSG VP + R G
Sbjct: 203 TADGRLLTNIVMMGMGEPLYNFDNVRDALKIVMDGDGLALSKRRITLSTSGVVPMMDRCG 262
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+EIGV LA+SLHAV+ ++R+ +VPINRKY LE L+ AC YPG SNARRITFEYVMLK
Sbjct: 263 DEIGVNLAVSLHAVTKEVRDEIVPINRKYGLEELLSACAAYPGASNARRITFEYVMLKDK 322
Query: 293 NDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
NDS DA L+++++ +PAK+NLIPFNPWPG Y CS + I FS+ + +G S+P+
Sbjct: 323 NDSDEDARELVRLIRKYKLPAKVNLIPFNPWPGAPYECSTPERIKRFSDIVFEAGISAPV 382
Query: 351 RTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
RTPRG DI AACGQLK+ ++R + +
Sbjct: 383 RTPRGRDIDAACGQLKTAAERKTRAELDRLAEE 415
>gi|296534699|ref|ZP_06897089.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
gi|296264972|gb|EFH11207.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
Length = 409
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 192/371 (51%), Positives = 250/371 (67%), Gaps = 14/371 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ REEL ++ IG R Q+W WIY +G+ DF MS I++ ++ L
Sbjct: 41 RRDLVGLSREELVAEMVAIG----EKPFRAKQLWHWIYHQGVTDFSQMSTIAKAMQGKLA 96
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + P + E+ S DGTRKWL F V I PE+ RG +CVS+QVGC+
Sbjct: 97 ERFVVGRPGVTTEQTSTDGTRKWLFGFRDGQQVETVYIPD---PEEDRGAVCVSTQVGCT 153
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C FC+TGTQKLVRNL A EI+ Q + AR G++P D R +S IV+M
Sbjct: 154 LSCKFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPTD-------GTPRLLSTIVIM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++NV K++ I D G++ S+RRITLSTSG VP + R G E+GV LA+SLHA
Sbjct: 207 GMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGAELGVGLAVSLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ND+R+ +VP+NRKYP+E L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+++
Sbjct: 267 VRNDIRDEIVPLNRKYPIEELMAACRRYPGASNARRITFEYVMLKGVNDSEADARELVRL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAK+NLIPFNPWPG Y S I F+ ++ +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKVNLIPFNPWPGSPYETSSNNAIHRFARIVQEAGYASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKVP 376
K+ S+R +
Sbjct: 387 KTESERAKRQR 397
>gi|86359510|ref|YP_471402.1| hypothetical protein RHE_CH03930 [Rhizobium etli CFN 42]
gi|86283612|gb|ABC92675.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 360
Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats.
Identities = 246/354 (69%), Positives = 291/354 (82%), Gaps = 3/354 (0%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
MR SQ+W WIYVRG+ DF M+++++++R +L QHF+I PEIV+E++S DGTRKWLLRF
Sbjct: 1 MRVSQLWNWIYVRGVSDFDHMTNVAKDMREMLKQHFTIARPEIVEEQVSNDGTRKWLLRF 60
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
PAR G PVEIE VYIPE+ RGTLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+L
Sbjct: 61 PARGAGRPVEIEAVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLL 120
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
LAR LGDFP E +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS
Sbjct: 121 LARDRLGDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSL 180
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
SKRR+TLSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+
Sbjct: 181 SKRRVTLSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKA 240
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
YPGLSNARRITFEYVMLK +NDS DA LIK+LKG+PAKINLIPFNPWPG Y CSD +
Sbjct: 241 YPGLSNARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWE 300
Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR---QEMQIT 383
I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R + M I
Sbjct: 301 QIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFEAMMIA 354
>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
Length = 364
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 161/377 (42%), Positives = 220/377 (58%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L E ++G R Q+ +WI+ G F M+D+++ +R L
Sbjct: 2 KTNLLNFDLNALTEHFAQMG----EKPFRAKQVMRWIHQGGAESFDEMTDLAKSLRAKLQ 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + P ++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EKAVVGIPVLMAAQESRDGTRKWLLDV-----GTGNGVETVFIPETERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A LG V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ N+DNV +LSI D G S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPMANYDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+ +VP+N+KYPL+ L+ AC Y + ITFEYVML G+ND P A L+++
Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLTKAPRDFITFEYVMLDGVNDKPEHAHELVQL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K P K NLIPFNP+P Y S K+I F E + +G + +R RG DI AACGQL
Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEAGLVTTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ K + QI
Sbjct: 342 AGQVQDKTKRQEKWQQI 358
>gi|91792611|ref|YP_562262.1| hypothetical protein Sden_1253 [Shewanella denitrificans OS217]
gi|123356968|sp|Q12PT7|RLMN_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|91714613|gb|ABE54539.1| conserved hypothetical protein [Shewanella denitrificans OS217]
Length = 373
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 169/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRSKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AERCVIVAPEIASFQKSADGTIKFAINV-----GQGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC TG Q RNLT EI+ Q+ LG V + R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVAQFLG----------FVKTTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + +G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVP+N+KYPL + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPVNKKYPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P K+NLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|327481756|gb|AEA85066.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 4166]
Length = 382
Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats.
Identities = 169/375 (45%), Positives = 222/375 (59%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS++ + +R L
Sbjct: 7 KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PEIV E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEIRGPEIVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LR+ LVPIN+KYPL++L+ AC+ Y +R+ T EY +LKG+ND P A +I
Sbjct: 228 PNDALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L IP KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ
Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVLDRTRRSERY 362
>gi|152995382|ref|YP_001340217.1| radical SAM protein [Marinomonas sp. MWYL1]
gi|205829788|sp|A6VV03|RLMN_MARMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|150836306|gb|ABR70282.1| radical SAM enzyme, Cfr family [Marinomonas sp. MWYL1]
Length = 371
Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 223/383 (58%), Gaps = 18/383 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +KK +L+G+ E+L E IG + R +Q+ KWI+ +G F+ M+D+S+ +
Sbjct: 1 MTDIKKVNLLGLSPEKLIEFFESIG----EKKFRATQVIKWIHQKGAESFEEMTDVSKAL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L Q I PE+V + IS DGTRKW++R +ETV IP+ R TLCVSS
Sbjct: 57 RAKLEQICEIRGPEVVSQNISTDGTRKWIIRTEGGKND---CVETVLIPDGDRATLCVSS 113
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL CSFC TG Q RNLT EI+ QV +A G + P+ R+++
Sbjct: 114 QVGCSLDCSFCSTGKQGFNRNLTPAEIIGQVWIAIKSFG----------PMDPNGPRRVT 163
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NF+ V ++ + SKRR+TLSTSG VP I + + V LA
Sbjct: 164 NVVMMGMGEPLMNFEPVVDAMILMMHDHAYGLSKRRVTLSTSGVVPKIYELVKRTDVSLA 223
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
ISLHA ++ LRN LVPIN+KYP+ L++AC+ Y +R IT EY ++ G+ND+ A
Sbjct: 224 ISLHAPNDALRNELVPINKKYPIAELLEACQFYLENLPDKRHITIEYTLMSGVNDNEEQA 283
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK + KINLIPFNP+P Y F + + +GY+ +RT RG DI
Sbjct: 284 HELAELLKVLECKINLIPFNPFPHSGYEKPSNNRTRRFQKILADAGYTVTVRTTRGDDID 343
Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
AACGQL + ++ +++
Sbjct: 344 AACGQLVGDFHDKTRRSQKYIEL 366
>gi|288957012|ref|YP_003447353.1| radical SAM enzyme [Azospirillum sp. B510]
gi|288909320|dbj|BAI70809.1| radical SAM enzyme [Azospirillum sp. B510]
Length = 396
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 211/368 (57%), Positives = 268/368 (72%), Gaps = 18/368 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+++L+G+ REELE +L +G+ + R Q+W WIY RG DF M+ +++ VR L
Sbjct: 27 RKNLVGLSREELEAEMLAVGLE----KFRARQLWHWIYHRGSTDFAEMTTLAKPVREKLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ P +V + S DGTRKWLLR P E+E+V+IPE+ RGTLCVSSQVGC+
Sbjct: 83 DTHIVARPTVVTDLKSADGTRKWLLRMP-----DGQEVESVHIPEEDRGTLCVSSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTC FC+TGTQ+LVRNL A EI+ QV+LAR +LG++P P GR +SNIVMM
Sbjct: 138 LTCRFCHTGTQRLVRNLDAAEIVAQVMLARDMLGEWPA---------PPDGRMLSNIVMM 188
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV K+L I D G+S SKRRITLSTSG VP + R G+E+ V LA+SLHA
Sbjct: 189 GMGEPLFNYDNVAKALKIVMDGDGISISKRRITLSTSGVVPMMERCGQELNVNLAVSLHA 248
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+++LRNI++PINRKYPL L++ACR YPGLSNARRITFEYVMLKG+ND+P DA L+K+
Sbjct: 249 VTDELRNIIMPINRKYPLRELMEACRTYPGLSNARRITFEYVMLKGVNDTPADARALVKL 308
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GIPAKINLIPFN WPG Y S + I F + + +GY+SP+RTPRG DI+AACGQL
Sbjct: 309 LEGIPAKINLIPFNEWPGAPYERSTARAIQLFGDIVNNAGYASPVRTPRGEDIMAACGQL 368
Query: 366 KSLSKRIP 373
KS S R+
Sbjct: 369 KSASLRLT 376
>gi|16124389|ref|NP_418953.1| hypothetical protein CC_0134 [Caulobacter crescentus CB15]
gi|221233072|ref|YP_002515508.1| radical SAM family enzyme [Caulobacter crescentus NA1000]
gi|81621310|sp|Q9ABT6|RLMN_CAUCR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807161|sp|B8GXM4|RLMN_CAUCN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|13421243|gb|AAK22121.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962244|gb|ACL93600.1| radical SAM family enzyme [Caulobacter crescentus NA1000]
Length = 404
Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats.
Identities = 197/379 (51%), Positives = 267/379 (70%), Gaps = 16/379 (4%)
Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L G+ R +L AL++ G+ +MR +QI++W++ RG+ DF MSD+++E R L
Sbjct: 25 INLSGLTRPQLVAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFADMSDVAKETRARLA 84
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
+ F+I PEIV+ ++S DGTRKWL+R +E+E+VYIP R G LCVSSQVGC
Sbjct: 85 EAFTIARPEIVERQVSKDGTRKWLIRM-----APGIEVESVYIPGVGRAGALCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ LVRNLTA EI+ QV +A+ L ++P R++SNIV
Sbjct: 140 TLNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLAEWPS---------DKEDRQLSNIVF 190
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N V ++ I SD+ G++ S+RRIT+STSG VP + ++G MLAISLH
Sbjct: 191 MGMGEPLYNLGQVADAIEIISDNEGIAISRRRITVSTSGVVPMLEKLGSTTQAMLAISLH 250
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR++LVP+N+KYP+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K
Sbjct: 251 ATNDPLRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALVK 310
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KGIPAKINLIPFNPWPG +Y CSD I F+ + ++GYSSPIRTPRG DILAACGQ
Sbjct: 311 LIKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQ 370
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+++ +++ +
Sbjct: 371 LKSESEKVRASALRKLSLA 389
>gi|329890963|ref|ZP_08269306.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568]
gi|328846264|gb|EGF95828.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568]
Length = 387
Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats.
Identities = 205/379 (54%), Positives = 273/379 (72%), Gaps = 16/379 (4%)
Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L G+ R+EL +AL+ I P +MR SQ+W+WI+ G+ DF MSD++++ R L
Sbjct: 18 VNLSGLTRDELRQALIDAEICPPEKAKMRASQVWRWIHHYGVTDFALMSDVAKDTRAKLA 77
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
+ F++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC
Sbjct: 78 EAFTLARPEIVERQVSKDGTRKWLIRT-----APGIEIETVYIPDVGRAGALCVSSQVGC 132
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQKLVRNLT EI+ QV +AR L ++P P R++SNIV
Sbjct: 133 TLNCTFCHTGTQKLVRNLTTAEIVAQVQVARDDLDEWPS---------PKEDRRLSNIVF 183
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG VP + +GE MLAISLH
Sbjct: 184 MGMGEPLYNLDHVANAIDIISDNEGIALSRRRITVSTSGVVPQLNALGERTAAMLAISLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ LVP+N+KYPL+ L+ A R YPGLSNARR+TFEYVMLKG+NDSP +A LIK
Sbjct: 244 ATNDPLRDQLVPLNKKYPLDQLMAAIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIK 303
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+++GIP+K+NLIPFNPWPG +Y CSD K I TF+ + ++GY+SPIRTPRG DILAACGQ
Sbjct: 304 LIEGIPSKVNLIPFNPWPGTDYQCSDWKTIETFAAILNKAGYASPIRTPRGRDILAACGQ 363
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+++ R + +
Sbjct: 364 LKSESEKLRASARLKAERE 382
>gi|237800040|ref|ZP_04588501.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022895|gb|EGI02952.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 382
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 170/375 (45%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|330969073|gb|EGH69139.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 382
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 170/375 (45%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|146308518|ref|YP_001188983.1| radical SAM protein [Pseudomonas mendocina ymp]
gi|205829652|sp|A4XY35|RLMN_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145576719|gb|ABP86251.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas mendocina ymp]
Length = 382
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 169/379 (44%), Positives = 227/379 (59%), Gaps = 21/379 (5%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R
Sbjct: 3 NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ
Sbjct: 59 EKLEASAEIRGPEVVSENISADGTRKWVVRVASGSC-----VETVYIPQNGRGTLCVSSQ 113
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC+L CSFC TG Q +LT+ EI+ QV +A G P D R I+N
Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKID----------RAITN 163
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I ++ E I V LA+
Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDAL 300
SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y +R+ T EY +LKG+ND P A
Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAE 283
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+I +L +P KINLIPFNP+P Y I F + + ++G++ +RT RG DI A
Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDA 343
Query: 361 ACGQLKSLS-KRIPKVPRQ 378
ACGQL R + R
Sbjct: 344 ACGQLVGQVMDRTRRSERY 362
>gi|66044493|ref|YP_234334.1| hypothetical protein Psyr_1245 [Pseudomonas syringae pv. syringae
B728a]
gi|75503082|sp|Q4ZX26|RLMN_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|63255200|gb|AAY36296.1| Conserved hypothetical protein 48 [Pseudomonas syringae pv.
syringae B728a]
Length = 382
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 170/375 (45%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472]
gi|81654669|sp|Q7NS85|RLMN_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 364
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 220/377 (58%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ ++L + ++G R Q+ +W++ DF M+D+++ +R L+
Sbjct: 2 KTNLLDFNLDQLTQHFAEMG----EKPFRAKQVMRWMHQMAEDDFDAMTDLAKSLRAKLH 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + P ++ + S DGTRKWLL G +ETV+IPE RGTLCVSSQVGC+
Sbjct: 58 ERAEVRVPSLMTGQASSDGTRKWLLDV-----GTGNGVETVFIPEDDRGTLCVSSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNL+ EI+ Q+ A +G V P R +SN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMG-----------VTPKNERVVSNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D G S+RR+TLSTSG VP + R+ EE V LA+SLHA
Sbjct: 162 GMGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+++VPIN+KYPL L+ ACR Y + ITFEYVML G+ND P A L+++
Sbjct: 222 PNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++ +P K NLIPFNP+P Y S I F E ++ GY +R RG DI AACGQL
Sbjct: 282 VRDVPCKFNLIPFNPFPNSGYDRSSNNAIRIFREILQEQGYVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + + QI
Sbjct: 342 AGQVQDKTRRQAKWTQI 358
>gi|289626156|ref|ZP_06459110.1| radical SAM protein [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289649062|ref|ZP_06480405.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|330869580|gb|EGH04289.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 382
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 171/375 (45%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+D+CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|71738083|ref|YP_273575.1| radical SAM protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|257487201|ref|ZP_05641242.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|298486020|ref|ZP_07004094.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|123761313|sp|Q48LZ7|RLMN_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|71558636|gb|AAZ37847.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298159497|gb|EFI00544.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322924|gb|EFW79014.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
gi|320329953|gb|EFW85941.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330874705|gb|EGH08854.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330985011|gb|EGH83114.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331009183|gb|EGH89239.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 382
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 171/375 (45%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+D+CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|74316609|ref|YP_314349.1| hypothetical protein Tbd_0591 [Thiobacillus denitrificans ATCC
25259]
gi|123773051|sp|Q3SL73|RLMN_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|74056104|gb|AAZ96544.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 372
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 157/378 (41%), Positives = 211/378 (55%), Gaps = 10/378 (2%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ L + G R Q++ WI+ G+ DF M+DI++ +R L
Sbjct: 3 QNLLDFDLAGLTAWFGERG----EKPFRARQVFHWIHQAGVTDFAQMTDIAKSLREKLQN 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ P I +S DGTRKWL G IETV+IPE RGTLCVSSQVGC+L
Sbjct: 59 EAVVQAPAINFAHLSADGTRKWLFDV-----GVGNGIETVFIPEDDRGTLCVSSQVGCAL 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNLT EI+ Q+ +A+ L P + R ++N+VMMG
Sbjct: 114 ECTFCSTGRQGFNRNLTVAEIVGQLWVAQHSLKREPNRTASDHGAGEIAERPVTNVVMMG 173
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV +L + D S+RR+T+STSG VP + R+ E V LA+SLHA
Sbjct: 174 MGEPLANFENVVTALGVMLDDHAYGLSRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAP 233
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ +VPINRKYPL L+ ACR Y + ITFEYVML G+ND P A LI +
Sbjct: 234 NDALRDQIVPINRKYPLAELMAACRRYLVHAPRDFITFEYVMLAGVNDQPEHARQLIALT 293
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P Y + + F E ++ +GY R RG DI AACGQL
Sbjct: 294 RDVPCKFNLIPFNPFPDSGYEKPRAEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQLA 353
Query: 367 SLS-KRIPKVPRQEMQIT 383
R +V ++ +
Sbjct: 354 GRVADRSGRVMKRVHREA 371
>gi|209965840|ref|YP_002298755.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW]
gi|209959306|gb|ACI99942.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW]
Length = 399
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 205/378 (54%), Positives = 269/378 (71%), Gaps = 17/378 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+G+ RE+LE + G + R Q+W+WIY RG+ DF M+++++ R L
Sbjct: 18 RVNLVGLSREDLEAEFARAGFE----KFRARQVWQWIYNRGVTDFAAMTNLAKPARERLA 73
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+H+ I P V + S DGTRKWL R P EIETV+IPE+ RGTLCVSSQVGC+
Sbjct: 74 EHYVIERPLAVKDLQSDDGTRKWLCRMP----ADGQEIETVHIPEEDRGTLCVSSQVGCT 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+TC FC+TGTQ+LVRNLT+ EI+ QV+LAR LG++P P+ GR +SNIVMM
Sbjct: 130 MTCRFCHTGTQRLVRNLTSAEIVGQVMLARDHLGEWPS---------PAEGRMLSNIVMM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++NV ++L I D G++ SKRRITLSTSG VP + R G E+GV LA+SLHA
Sbjct: 181 GMGEPLFNYENVARALKIVMDGEGIAISKRRITLSTSGVVPMMRRCGAELGVNLAVSLHA 240
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+++LRN +VPIN+KYP+ L+DA R YPGL+NARR+T+EYVMLKG+NDS DA L+++
Sbjct: 241 VTDELRNRIVPINKKYPIAELMDAVRTYPGLNNARRVTWEYVMLKGVNDSLADARALVRL 300
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++GIP+KINLIPFNPWPG + CSD IV FS+ + +GY+SPIR PRG DI+AACGQL
Sbjct: 301 IRGIPSKINLIPFNPWPGAPFECSDWDQIVRFSDFVNDAGYASPIRAPRGKDIMAACGQL 360
Query: 366 KSLSKRIPKVPRQEMQIT 383
KS S+R R
Sbjct: 361 KSESQRGISARRAAHMEE 378
>gi|205829717|sp|A4VNX4|RLMN_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 382
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 169/375 (45%), Positives = 221/375 (58%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS++ + +R L
Sbjct: 7 KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PEIV E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEIRGPEIVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+ LR+ LVPIN+KYPL++L+ AC+ Y +R+ T EY +LKG+ND P A +I
Sbjct: 228 PNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L IP KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ
Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVLDRTRRSERY 362
>gi|289677951|ref|ZP_06498841.1| hypothetical protein PsyrpsF_31988 [Pseudomonas syringae pv.
syringae FF5]
gi|302185748|ref|ZP_07262421.1| hypothetical protein Psyrps6_05363 [Pseudomonas syringae pv.
syringae 642]
gi|330895885|gb|EGH28170.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 382
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 168/375 (44%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVP+N+KYPL++L+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|330872882|gb|EGH07031.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330965912|gb|EGH66172.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 382
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 170/375 (45%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISTDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|28868638|ref|NP_791257.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|81732046|sp|Q886Z3|RLMN_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|28851876|gb|AAO54952.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331019383|gb|EGH99439.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 382
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 168/375 (44%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVP+N+KYPL++L+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|311694381|gb|ADP97254.1| conserved hypothetical protein [marine bacterium HP15]
Length = 370
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 227/380 (59%), Gaps = 20/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+GM + +LE +G R R +Q+ +WI+ RG DF M+++S+ +R L
Sbjct: 6 EKTNLLGMPKAKLEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKALREKL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+V ++ S DGTRKW++R +ETV IP+ RGTLCVSSQ+GC
Sbjct: 62 KQVAEIRGPEVVYDETSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C+FC TG + RNLTA E++ QV +AR P R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEVIGQVWVARKAF----------MPFEPGPDRPITNVVM 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV ++++ + + SKRR+TLSTSG VP + R+ E V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLSEVTDVSLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303
A +++LRN LVP+N+KYP+ L+ A + Y L + R+ T EY +++G+ND P A L
Sbjct: 227 APNDELRNKLVPLNKKYPISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELA 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+ +P KINLIPFNP+P ++ F + +GY + IRT RG DI AACG
Sbjct: 287 VLLRDLPCKINLIPFNPFPESDFRRPSMNATRRFQNVLNEAGYITTIRTTRGDDIDAACG 346
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QL + + ++ +Q+
Sbjct: 347 QLVGRVEDRTRRSQRYIQVQ 366
>gi|15599001|ref|NP_252495.1| hypothetical protein PA3806 [Pseudomonas aeruginosa PAO1]
gi|107103326|ref|ZP_01367244.1| hypothetical protein PaerPA_01004395 [Pseudomonas aeruginosa PACS2]
gi|116051831|ref|YP_789326.1| hypothetical protein PA14_14830 [Pseudomonas aeruginosa UCBPP-PA14]
gi|296387679|ref|ZP_06877154.1| hypothetical protein PaerPAb_05972 [Pseudomonas aeruginosa PAb1]
gi|313109224|ref|ZP_07795192.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
gi|3287987|sp|Q51385|RLMN_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|122260978|sp|Q02RW0|RLMN_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|9949979|gb|AAG07193.1|AE004798_16 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|1162959|gb|AAB40948.1| homologous to HI0365 in Haemophilus influenzae; ORF1 [Pseudomonas
aeruginosa PAO1]
gi|115587052|gb|ABJ13067.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
UCBPP-PA14]
gi|310881694|gb|EFQ40288.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
Length = 379
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 171/375 (45%), Positives = 226/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q +LTA E++ QV +A G P D R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL ML+DACR Y +R+ T EY +LK +ND P A +I
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 349 LVGQVMDRTRRSERY 363
>gi|330957524|gb|EGH57784.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 382
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 170/375 (45%), Positives = 226/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDVMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDQVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|218889910|ref|YP_002438774.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
gi|218770133|emb|CAW25895.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
Length = 379
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 171/375 (45%), Positives = 226/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q +LTA E++ QV +A G P D R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL ML+DACR Y +R+ T EY +LK +ND P A +I
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 349 LVGQVMDRTRRSERY 363
>gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
Length = 362
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 227/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L E ++G R Q+ +W++ G DF M+D+++ +R L
Sbjct: 2 KNNLLNYDLKTLTEWFAEMG----ERPFRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+H + P ++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EHACVGAPALMASQESRDGTRKWLLDV-----GTGNGVETVFIPESERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLT EI+ Q+ A LG P E R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTTAEIVGQLWWANKALGATPKDE-----------RVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV +SLS+ D G S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVVRSLSVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+ +VP+N+KYPL+ L+ ACR Y + +TFEYVML G+ND A L+K+
Sbjct: 222 SNDHVRDQIVPLNKKYPLKDLMAACRRYLVKAPRDFVTFEYVMLDGVNDKAEHARELLKL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VEDVPCKFNLIPFNPFPHSGYERSSAENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
K + ++ Q+
Sbjct: 342 AGQVKDKTRRQQKWQQL 358
>gi|94495790|ref|ZP_01302369.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58]
gi|94424482|gb|EAT09504.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58]
Length = 420
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 192/389 (49%), Positives = 265/389 (68%), Gaps = 16/389 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ R +++ + G+ + ++R+ QI+ W+Y RG DF M+D+++ +R +
Sbjct: 31 RVDLMGLSRAQIKSVFEEAGLDAKAAKLRSKQIFHWLYHRGETDFDAMTDLAKPMRGWMA 90
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + P++V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+
Sbjct: 91 ERFVVGRPQVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC---------EDIEGMVIPSVG 176
L CSFC+TGT +LVRNLT EI+ QV+LAR LG++P E E S G
Sbjct: 146 LNCSFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDDEGDEASHYTSDG 205
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
R ++NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG +P +AR GEEIG
Sbjct: 206 RMLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVIPMMARAGEEIG 265
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V LA+SLH V+ D+R+ LVP+NRK+ +E L+ AC YPG +NARRITFEYVM+K NDS
Sbjct: 266 VNLAVSLHGVTKDVRDELVPLNRKFGIEELLAACAAYPGANNARRITFEYVMIKDKNDSD 325
Query: 297 RDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
DA L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPR
Sbjct: 326 ADARELVRLLRHYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPR 385
Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQIT 383
G DI+AACGQLKS S++ K + +
Sbjct: 386 GRDIMAACGQLKSASEKKSKAEMRRLAEE 414
>gi|205829898|sp|A1RHQ0|RLMN_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
Length = 373
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 165/385 (42%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAIHV-----GEGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGDRPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
pealeana ATCC 700345]
gi|205829883|sp|A8H242|RLMN_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
Length = 373
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 165/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKALRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AAKCEIVAPEISSYQKSVDGTIKFAINV-----GDGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ +G V + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIG----------FVKDTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR++LVP+N+KYPLE + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKQMQQNQIS 369
>gi|213971521|ref|ZP_03399632.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
gi|301386126|ref|ZP_07234544.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato Max13]
gi|302060174|ref|ZP_07251715.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato K40]
gi|302135117|ref|ZP_07261107.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213923713|gb|EEB57297.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
Length = 382
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 170/375 (45%), Positives = 226/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISTDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMRLMMDDLGYGISKRRVTLSTSGVVPMIDELSRHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|114568582|ref|YP_755262.1| radical SAM protein [Maricaulis maris MCS10]
gi|122317061|sp|Q0ATR3|RLMN_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|114339044|gb|ABI64324.1| 23S rRNA m(2)A-2503 methyltransferase [Maricaulis maris MCS10]
Length = 396
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 191/378 (50%), Positives = 264/378 (69%), Gaps = 15/378 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
SL GM REEL + G+ ++ +MR Q+W+WIY G+ F M++IS+++R ++
Sbjct: 26 PSLAGMTREELRLVAIDCGVEEKKAKMRAEQLWRWIYHYGVTSFDEMTNISKDLRAVIAD 85
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
+++ P+++D ++S DGTRK+L+ VE ETV+IP+ +R G LCVSSQVGC+
Sbjct: 86 KYALHRPKLIDRQVSVDGTRKYLIEL-----APGVECETVFIPDVARSGALCVSSQVGCT 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC+TGTQ LVRNLTA EI+ QV++AR L ++P + RKI+NIV M
Sbjct: 141 LNCTFCHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTS---------NENRKITNIVFM 191
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N D+V S+ I SD G++ S+RR T+STSG VP I +G G MLAISLHA
Sbjct: 192 GMGEPLYNLDHVATSIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHA 251
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ LR+ LVP+N+KYPL L++A R YPGL N++R+TFEYVMLKG+NDS +A L+K+
Sbjct: 252 TNDTLRDELVPLNKKYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKL 311
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGIPAKINLIPFNPWP Y CSD I F++ + ++GY+SPIRTPRG DI AACGQL
Sbjct: 312 LKGIPAKINLIPFNPWPKSPYECSDWDQIEAFADVVNKAGYASPIRTPRGRDIFAACGQL 371
Query: 366 KSLSKRIPKVPRQEMQIT 383
+S S+++ ++ ++
Sbjct: 372 RSESQKVKASVLRKQRLA 389
>gi|77460825|ref|YP_350332.1| hypothetical protein Pfl01_4604 [Pseudomonas fluorescens Pf0-1]
gi|123772061|sp|Q3K7B3|RLMN_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|77384828|gb|ABA76341.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 382
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 167/375 (44%), Positives = 227/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KNNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 AVAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATID----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY +LK +ND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK IP KINLIPFNP+P Y I F + + ++G++ +RT RG DI AACGQ
Sbjct: 288 LLKDIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVLDRTRRSERY 362
>gi|70732281|ref|YP_262037.1| radical SAM protein [Pseudomonas fluorescens Pf-5]
gi|123748356|sp|Q4K6U6|RLMN_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|68346580|gb|AAY94186.1| radical SAM enzyme, Cfr family [Pseudomonas fluorescens Pf-5]
Length = 382
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 166/378 (43%), Positives = 226/378 (59%), Gaps = 21/378 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R
Sbjct: 4 SIGKTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALRE 59
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ
Sbjct: 60 KLKAVAEIRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQA 114
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L CSFC TG Q NLTA E++ QV +A G P D R I+N+
Sbjct: 115 GCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNV 164
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+S
Sbjct: 165 VMMGMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALS 224
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALN 301
LHA ++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY +LK +ND A+
Sbjct: 225 LHAPNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVE 284
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+I++LK +P KINLIPFNP+P Y I F + + +G++ +RT RG DI AA
Sbjct: 285 MIELLKDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAA 344
Query: 362 CGQLKSLS-KRIPKVPRQ 378
CGQL R + R
Sbjct: 345 CGQLVGQVLDRTRRSERY 362
>gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-4]
gi|122943998|sp|Q0HKW2|RLMN_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4]
Length = 373
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 164/385 (42%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISSYQKSADGTIKFAIHV-----GEGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|152989129|ref|YP_001346692.1| hypothetical protein PSPA7_1308 [Pseudomonas aeruginosa PA7]
gi|205829634|sp|A6V0V7|RLMN_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|150964287|gb|ABR86312.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 378
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 170/375 (45%), Positives = 226/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 7 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 AFAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q +L+A E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSDLSAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL ML+DACR Y +R+ T EY +LK +ND P A +I
Sbjct: 228 PNDELRNRLVPINKKYPLTMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKGGFNVTVRTTRGDDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72]
gi|205829650|sp|A1K3Y6|RLMN_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 375
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 160/381 (41%), Positives = 217/381 (56%), Gaps = 11/381 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +L+ + L + +G R Q+ +W++ G DF M+D+++ +
Sbjct: 1 MNT--PVNLLDFDVDGLVDWFAGLG----EKPFRARQVMRWMHREGCDDFDQMTDVAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I P V + +S DGTRKWLL G +ETV+IPE +RGTLCVSS
Sbjct: 55 RAKLKEIAVIRPPVPVRDSVSSDGTRKWLLDV-----GNANAVETVFIPETNRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC+L C+FC TG Q RNLTA EI+ Q+ LA LLG GR IS
Sbjct: 110 QAGCALDCAFCSTGKQGFNRNLTAAEIIGQLWLANKLLGAARDAAADLEAGEKDNGRIIS 169
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NFDNV +L + D S+RR+T+STSG VP I R+ +E V LA
Sbjct: 170 NVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAIDRLRDECPVALA 229
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVPIN+KYPL L+ AC+ Y + ITFEYVML G+ND A
Sbjct: 230 VSLHASNDALRDRLVPINQKYPLRELMAACQRYLERAPRDFITFEYVMLDGVNDQEAHAR 289
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI +++ +P K NLIPFNP+P + S+ + I F+ + +G + R RG D+ A
Sbjct: 290 ELIALVRDVPCKFNLIPFNPFPNSGFQRSNAERIRRFAGILLDAGIVTTTRKTRGDDVDA 349
Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
ACGQL + + + Q
Sbjct: 350 ACGQLAGQVQDKTRRTVRLKQ 370
>gi|85374384|ref|YP_458446.1| Fe-S-cluster redox protein [Erythrobacter litoralis HTCC2594]
gi|123409605|sp|Q2N9J2|RLMN_ERYLH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|84787467|gb|ABC63649.1| predicted Fe-S-cluster redox enzyme [Erythrobacter litoralis
HTCC2594]
Length = 418
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 188/375 (50%), Positives = 257/375 (68%), Gaps = 13/375 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ + ++E + G+ + ++R+ Q++ W+Y RG+ DF+ M+DI++ +R L
Sbjct: 29 RVDLMGLPKARIQELFAEAGLDAKQAKLRSKQVYHWLYHRGVTDFEAMTDIAKTMRPWLA 88
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + P +V+ + S DGTRKWLL+ + E V+IP+ RGTLCVSSQVGC+
Sbjct: 89 ERFIVGRPNVVEAQHSTDGTRKWLLQT-----DDGHDFEMVFIPDADRGTLCVSSQVGCT 143
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179
L C FC+TGT +LVRNLT EI+ QV+LAR LG++P + + + GR +
Sbjct: 144 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGRMDGLDDVEDTGHYSADGRLL 203
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+NIVMMGMGEPL NFDNV+ +L + D GL+ SKRRITLSTSG VP + R GEEIGV L
Sbjct: 204 TNIVMMGMGEPLYNFDNVRDALKLVMDGEGLALSKRRITLSTSGVVPMMERCGEEIGVNL 263
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHAV+ D+R+ +VPIN+KY +E L+ AC YPG SNARRITFEYVMLK ND+ A
Sbjct: 264 AVSLHAVTKDIRDEIVPINKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDTDEHA 323
Query: 300 LNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L+++LK +PAK+NLIPFNPWPG Y CS + I FS + G S+P+RTPRG D
Sbjct: 324 RELVRLLKQYNLPAKVNLIPFNPWPGAAYECSTPERIRAFSNIVFEGGISAPVRTPRGRD 383
Query: 358 ILAACGQLKSLSKRI 372
I AACGQLK+ +++
Sbjct: 384 IDAACGQLKTAAQKK 398
>gi|254236710|ref|ZP_04930033.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126168641|gb|EAZ54152.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 379
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 170/375 (45%), Positives = 225/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q +LTA E++ QV +A G P D R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GM EPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMSEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL ML+DACR Y +R+ T EY +LK +ND P A +I
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 349 LVGQVMDRTRRSERY 363
>gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
Length = 364
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 162/377 (42%), Positives = 221/377 (58%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L E ++G R Q+ +WI+ G +F+ M+D+++ +R L
Sbjct: 2 KTNLLNYDLPALTEHFAQMG----EKPFRAKQVMRWIHQGGAENFEQMTDLAKSLRAKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q + P ++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 QQAEVGIPALMTSQESKDGTRKWLLDV-----GTGNGVETVFIPETERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNL+A EI+ Q+ A LG V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSAAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV +LSI D G S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+ +VP+N+KYPL+ L+ AC Y + ITFEYVML G+ND P A L+++
Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K P K NLIPFNP+P Y S K+I F E + + + +R RG DI AACGQL
Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
K K + QI
Sbjct: 342 AGQVKDKTKRQEKWQQI 358
>gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454]
gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454]
Length = 391
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 153/383 (39%), Positives = 210/383 (54%), Gaps = 16/383 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ L +G R Q+ +WI+ G+ DF M+D+++ +
Sbjct: 13 MTMTDTVNLLDFDAAGLVAYCASLG----EKPFRARQLQRWIHHGGVSDFDAMTDLAKSL 68
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI +P ++ + S DGTRKWLL G +ETVYIPE+ RGTLCVSS
Sbjct: 69 RDKLKTRASIRHPAVLQDHTSADGTRKWLLDV-----GEGNAVETVYIPEQGRGTLCVSS 123
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL EI+ Q+ +A L G R I+
Sbjct: 124 QAGCAVNCRFCSTGKQGFSRNLGVGEIIGQLWMAEFALRAARGGLAPG-------ERVIT 176
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NFD V ++ + D S+RR+TLSTSG VP I R+ E+ V LA
Sbjct: 177 NVVMMGMGEPLLNFDAVVPAMRLMLDDHAYGLSRRRVTLSTSGVVPMIDRLAAELPVALA 236
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+NRKYPL L+ AC Y ++ ITFEY ML G+ND A
Sbjct: 237 VSLHAPNDALRDELVPLNRKYPLAELMAACNRYLRVAPRDFITFEYCMLDGVNDRDEHAR 296
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P L S + I F++ + +G + +R RG DI A
Sbjct: 297 QLLALTRDVPCKFNLIPFNPFPESGLLRSHPERIKQFAQILIDAGVVTTVRRTRGDDIDA 356
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL + +V + +
Sbjct: 357 ACGQLAGEVRDRTRVAERMRRDA 379
>gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-7]
gi|123326715|sp|Q0HX60|RLMN_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7]
Length = 373
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 164/385 (42%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISSYQKSTDGTIKFAIHV-----GEGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
ANA-3]
gi|205829885|sp|A0KUJ2|RLMN_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3]
Length = 373
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 164/385 (42%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISSYQKSTDGTIKFAIHV-----GEGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|163793899|ref|ZP_02187873.1| radical SAM family enzyme [alpha proteobacterium BAL199]
gi|159181010|gb|EDP65527.1| radical SAM family enzyme [alpha proteobacterium BAL199]
Length = 389
Score = 389 bits (999), Expect = e-106, Method: Composition-based stats.
Identities = 202/378 (53%), Positives = 264/378 (69%), Gaps = 18/378 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ R+ L L IG+P RT QIW W+Y RG DFQ M+ +++ +R L
Sbjct: 30 RPDLLGLERDALAAVLDGIGLPA----FRTGQIWHWLYHRGATDFQTMTTLAKPLRARLA 85
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I P +V + S DGT KWLLRF E E V+IPE+ RGTLCVSSQVGC+
Sbjct: 86 ETFRISRPSVVTRQDSIDGTIKWLLRF-----ADGNEAEAVFIPEEDRGTLCVSSQVGCT 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQ+LVRNLT+ EI+ QV++A LG +P R ++NIV+M
Sbjct: 141 LTCSFCHTGTQRLVRNLTSAEIVGQVMVALDHLGAYPTG---------GPNRPLTNIVLM 191
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D G++ SKRRITLSTSG VP +A+ G ++GV LAISLHA
Sbjct: 192 GMGEPLYNFDNVASAMRIIMDGEGVALSKRRITLSTSGVVPMMAQCGADLGVNLAISLHA 251
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+ LVPINRK+P+ L+DACR YPGL+NARRITFEYVML G+ND+P DA L+ +
Sbjct: 252 TTDTVRDDLVPINRKWPIAELLDACRRYPGLNNARRITFEYVMLAGVNDAPADARRLVAL 311
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++GIPAKINLIPFNPWPG +Y+CSD I F++ + +GY+SP+RTPRG DILAACGQL
Sbjct: 312 IEGIPAKINLIPFNPWPGSKYVCSDPDTIERFAQIVLAAGYASPVRTPRGRDILAACGQL 371
Query: 366 KSLSKRIPKVPRQEMQIT 383
KS S ++ + + +
Sbjct: 372 KSESAKLTRREARSVAAE 389
>gi|330807644|ref|YP_004352106.1| hypothetical protein PSEBR_a933 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375752|gb|AEA67102.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 382
Score = 389 bits (999), Expect = e-106, Method: Composition-based stats.
Identities = 166/375 (44%), Positives = 225/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 AVAEIRGPEVVSQDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVSAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY +LK +ND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK IP KINLIPFNP+P Y I F + + +G++ +RT RG DI AACGQ
Sbjct: 288 LLKNIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVLDRTRRSERY 362
>gi|325272138|ref|ZP_08138570.1| radical SAM protein [Pseudomonas sp. TJI-51]
gi|324102734|gb|EGC00149.1| radical SAM protein [Pseudomonas sp. TJI-51]
Length = 381
Score = 389 bits (999), Expect = e-106, Method: Composition-based stats.
Identities = 168/375 (44%), Positives = 223/375 (59%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKALREKLE 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+
Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL+ML+++C Y +R+ T EY +LK +ND P A +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMATLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347
Query: 365 LKSL-SKRIPKVPRQ 378
L + R + R
Sbjct: 348 LVGQVNDRTRRSERY 362
>gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella
putrefaciens CN-32]
gi|205829884|sp|A4Y8U3|RLMN_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32]
Length = 373
Score = 389 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 164/385 (42%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAIHV-----GEGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGDRPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K+++ P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AKLMEDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
W3-18-1]
gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1]
Length = 399
Score = 389 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 165/385 (42%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 30 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 86 AARCEIVAPEISSFQKSTDGTIKFAIHV-----GEGQEVETVYIPEDDRATLCVSSQVGC 140
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 141 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGDRPITNVVM 190
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 191 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 250
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 251 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 310
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 311 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 370
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 371 GQLAGDIRDRTKRLAKKRMQENQIS 395
>gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002]
gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002]
Length = 364
Score = 389 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 158/378 (41%), Positives = 221/378 (58%), Gaps = 20/378 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ +L + +G R Q+ +W++ G DF M+DI++ +R L+
Sbjct: 2 KTNLLDFNLAQLTDHFAAMG----EKPFRAKQVMRWMHQMGEADFDAMTDIAKSLRCKLH 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + P+++ E+ S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 ESAEVRVPDLMVEQASSDGTRKWLLDV-----GTGNGVETVFIPEDDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNL+ EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +L I D G S+RR+T+STSG VP + R+ E V LA+SLHA
Sbjct: 162 GMGEPLANFDNVVSALQIMLDDHGYGLSRRRVTVSTSGMVPQMDRLREACPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+++VPIN+KYPL L+ AC+ Y + +TFEYVML +ND P A LI++
Sbjct: 222 PNDAIRDVIVPINKKYPLRELMAACQRYLEKAPRDFVTFEYVMLDDVNDRPEHARQLIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S I F E ++ +GY +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNNAIHRFREILQEAGYVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQIT 383
+ + + ++I
Sbjct: 342 AGQVQDKTRRKTKWIRIE 359
>gi|296282660|ref|ZP_06860658.1| Fe-S-cluster redox protein [Citromicrobium bathyomarinum JL354]
Length = 417
Score = 389 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 189/382 (49%), Positives = 258/382 (67%), Gaps = 13/382 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ LIG+ + + E G+ + ++R+ Q++ W+Y RG+ +F+ M+DI++ +R L
Sbjct: 29 RVDLIGLPKARIRELFEAAGLDAKAAKLRSKQVFHWLYHRGVTEFEAMTDIAKTMRPWLT 88
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V+ S DGTRKW+LR + E V+IP+ RGTLC+SSQVGC+
Sbjct: 89 ERFVIGRPEVVEAHHSTDGTRKWVLRT-----ADGNDFEMVFIPDADRGTLCISSQVGCT 143
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179
L C FC+TGT +LVRNLT EI+ QV+LAR LG++P E + S GR +
Sbjct: 144 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDSLGEWPKGSMAGLDEVEDSAEYTSDGRLL 203
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+NIV+MGMGEPL NFDNV+ ++ + D GL+ SKRRITLSTSG VP + R GEEIGV L
Sbjct: 204 TNIVLMGMGEPLYNFDNVRDAMKLVMDGDGLALSKRRITLSTSGVVPMMERCGEEIGVNL 263
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHAV D+R+ +VP+N+KY +E L+ AC YPG SNARRITFEY+MLK NDS DA
Sbjct: 264 AVSLHAVRKDIRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYIMLKDKNDSDEDA 323
Query: 300 LNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L+++LK +PAK+NLIPFNPWPG +Y S + I FS+ + G S+P+RTPRG D
Sbjct: 324 RELVRLLKQYDLPAKVNLIPFNPWPGSDYETSLPERIRAFSDIVFEGGISAPVRTPRGRD 383
Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
I AACGQLK+ +++ + R
Sbjct: 384 IGAACGQLKTAAEKKSRAQRDR 405
>gi|330504682|ref|YP_004381551.1| radical SAM protein [Pseudomonas mendocina NK-01]
gi|328918968|gb|AEB59799.1| radical SAM protein [Pseudomonas mendocina NK-01]
Length = 382
Score = 389 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 167/379 (44%), Positives = 225/379 (59%), Gaps = 21/379 (5%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R
Sbjct: 3 NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ
Sbjct: 59 EKLEASAEIRGPEVVSENISADGTRKWVVRVASGSC-----VETVYIPQNGRGTLCVSSQ 113
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC+L CSFC TG Q +LT+ EI+ QV +A G P D R I+N
Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKID----------RAITN 163
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I ++ E I V LA+
Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDAL 300
SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y +R+ T EY +LKG+ND A
Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQLEHAE 283
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+I +L +P KINLIPFNP+P Y I F + + ++G++ +R RG DI A
Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRATRGDDIDA 343
Query: 361 ACGQLKSLS-KRIPKVPRQ 378
ACGQL R + R
Sbjct: 344 ACGQLVGQVMDRTRRSERY 362
>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
amazonensis SB2B]
gi|205829877|sp|A1S866|RLMN_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 373
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 167/385 (43%), Positives = 222/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + L+ L ++G R QI +WIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDLPGLKALLTEMG----EKPFRAQQIMQWIYHFGVSDFEQMTNINKAMRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEITSYQKSSDGTIKFAINV-----GQGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R ISN+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FQKETGERPISNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV +++I D G SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKLGDVIDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR++LVPIN+KYPL+ + A R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDVLVPINKKYPLQEFLAAIRRYLEKSNANRGRVTLEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P KINLIPFNP+PG Y S I F++ + + +R RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFAKVLMEYDLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQESQIS 369
>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
Length = 384
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYERSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
Length = 370
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 229/380 (60%), Gaps = 20/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+GM + ++E +G R R +Q+ +WI+ RG DF M+++S+ +R L
Sbjct: 6 EKTNLLGMPKAKMEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKVLREKL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+V ++ S DGTRKW++R +ETV IP+ RGTLCVSSQ+GC
Sbjct: 62 KAVAEIRGPEVVYDESSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C+FC TG + RNLTA EI+ QV +AR P R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARKAF----------MPFEPGPDRPITNVVM 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV ++++ + + SKRR+T+STSG VP + ++GE V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTVSTSGVVPALDKLGEVTDVSLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303
A +++LRN LVP+N+KYP+ L+ A R Y L + R+ T EY +++G+ND P A L
Sbjct: 227 APNDELRNQLVPLNKKYPIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELA 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+G+P KINLIPFNP+P ++ F + +GY + +RT RG DI AACG
Sbjct: 287 VVLRGLPCKINLIPFNPFPESDFRRPSMNATRRFQSVLNEAGYIATVRTTRGDDIDAACG 346
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QL + + K ++ +Q+
Sbjct: 347 QLVGMVEDRTKRSQRYIQVQ 366
>gi|229592444|ref|YP_002874563.1| hypothetical protein PFLU5060 [Pseudomonas fluorescens SBW25]
gi|259491993|sp|C3K1L7|RLMN_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|229364310|emb|CAY52051.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 382
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 169/375 (45%), Positives = 226/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 AIAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella
halifaxensis HAW-EB4]
gi|205829881|sp|B0TLI1|RLMN_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4]
Length = 373
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 166/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKALRVLFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AAKCEIVAPEISSYQKSVDGTIKFAINV-----GDGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ +G V + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIG----------FVKDTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR++LVP+N+KYPLE + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKQMQESQIS 369
>gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|24374826|ref|NP_718869.1| hypothetical protein SO_3315 [Shewanella oneidensis MR-1]
gi|81589118|sp|Q8EC29|RLMN_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|24349512|gb|AAN56313.1|AE015769_9 conserved hypothetical protein TIGR00048 [Shewanella oneidensis
MR-1]
Length = 373
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 164/385 (42%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISGYQKSADGTIKFAIHV-----GEGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|307295042|ref|ZP_07574884.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1]
gi|306879516|gb|EFN10734.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1]
Length = 419
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 192/381 (50%), Positives = 264/381 (69%), Gaps = 15/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ R +++ AL + G+ + ++R+ Q++ W+Y RG DF M+D+++ +R +
Sbjct: 31 RVDLMGLSRPQIKSALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMA 90
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+
Sbjct: 91 ERFVVGRPEVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--------EDIEGMVIPSVGR 177
L C FC+TGT +LVRNLT EI+ QV+LAR LG++P E + GR
Sbjct: 146 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASVNDDEADDASQYSPDGR 205
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
++NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV
Sbjct: 206 MLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGV 265
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLHAV+ D+R+ LVP+NRKY +E L+ AC YPG +NARRITFEYVM++ NDS
Sbjct: 266 NLAVSLHAVTKDVRDELVPLNRKYGIEDLLQACADYPGANNARRITFEYVMIRDKNDSDD 325
Query: 298 DALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
DA L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPRG
Sbjct: 326 DARELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRG 385
Query: 356 LDILAACGQLKSLSKRIPKVP 376
DI+AACGQLKS S++ +
Sbjct: 386 RDIMAACGQLKSASEKKSRAE 406
>gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS195]
gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS223]
gi|304410038|ref|ZP_07391657.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183]
gi|307302249|ref|ZP_07582007.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175]
gi|205829880|sp|A9KXL1|RLMN_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807210|sp|B8E9S4|RLMN_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195]
gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223]
gi|304351447|gb|EFM15846.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183]
gi|306914287|gb|EFN44708.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175]
gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
Length = 373
Score = 388 bits (996), Expect = e-106, Method: Composition-based stats.
Identities = 167/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAINV-----GQGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVPIN+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P K+NLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
Length = 388
Score = 388 bits (996), Expect = e-106, Method: Composition-based stats.
Identities = 161/380 (42%), Positives = 217/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E +G R Q+ KW+Y DF M+DI++ +R L
Sbjct: 20 EKINLLDLNRQEMREFFKTLG----EKPFRADQVMKWMYHYCSDDFDEMTDINKVLRGKL 75
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC
Sbjct: 76 KEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGC 129
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379
>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli 1180]
Length = 384
Score = 388 bits (996), Expect = e-106, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRDKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|170723489|ref|YP_001751177.1| radical SAM protein [Pseudomonas putida W619]
gi|205829826|sp|B1JDQ5|RLMN_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|169761492|gb|ACA74808.1| radical SAM enzyme, Cfr family [Pseudomonas putida W619]
Length = 381
Score = 388 bits (996), Expect = e-106, Method: Composition-based stats.
Identities = 168/375 (44%), Positives = 223/375 (59%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLE 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+
Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL+ML+++C Y +R+ T EY +LK +ND P A +I+
Sbjct: 228 PNDELRNQLVPINKKYPLKMLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347
Query: 365 LKSL-SKRIPKVPRQ 378
L + R + R
Sbjct: 348 LVGQVNDRTRRSERY 362
>gi|294789305|ref|ZP_06754543.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453]
gi|294482730|gb|EFG30419.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453]
Length = 363
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 161/377 (42%), Positives = 220/377 (58%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L E ++G R Q+ +WI+ G +F M+D+++ +R LN
Sbjct: 2 KTNLLNFDLPTLTEHFAQMG----EKPFRAKQVMRWIHQSGAENFDQMTDLAKSLRAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + P ++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 DNAQVGIPALITSQESKDGTRKWLLDV-----GTGNGVETVFIPETERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNL+ EI+ Q+ A LG V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV +LSI D G S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVINALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+ +VP+N+KYPL+ L+ AC Y + ITFEYVML GIND P A L+++
Sbjct: 222 SNDQVRDKIVPLNKKYPLKELMAACNRYLMKAPRDFITFEYVMLDGINDKPEHAHELVQL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K P K NLIPFNP+P Y S K+I F E + + + +R RG DI AACGQL
Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ K + QI
Sbjct: 342 AGQVQDKTKRQEKWQQI 358
>gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
Length = 363
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 155/378 (41%), Positives = 224/378 (59%), Gaps = 20/378 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L ++G R Q+ +W++ DF M+D+++ +R LN
Sbjct: 2 KTNLLNYDLAGLTAHFAQMG----EKPFRARQVMRWMHQGAAGDFDEMTDLAKSLRAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + P ++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 ESAQVGVPALMAAQESRDGTRKWLLDV-----GTGNGVETVFIPETDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNL+ EI+ Q+ A LG P E R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKALGATPKDE-----------RVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV +LSI D G + S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVVTALSIMLDDHGYALSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +RN +VP+N+KYPL+ L+ AC+ Y + +TFEYVML G+ND P A L+++
Sbjct: 222 PNDAIRNEIVPLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGVNDKPEHARELLEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + + ++G +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYNRSSDENIRVFRDILYQAGLVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQIT 383
+ + ++ +Q+
Sbjct: 342 AGQVQDKTRRQQKWLQLQ 359
>gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB]
gi|123760407|sp|Q47BR3|RLMN_DECAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB]
Length = 364
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 152/369 (41%), Positives = 214/369 (57%), Gaps = 20/369 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ E L + G R Q+ +WI+ G+ DF M+DI++ +R L
Sbjct: 3 VNLLDFDGESLTAWFAEQG----EKPFRAKQVLRWIHRSGVADFDAMTDIAKSLREKLKA 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ P +V +K+S DGTRK+L+ G +ETV+IPE RGTLC+S+Q GC+L
Sbjct: 59 KAVVAPPAVVSDKLSDDGTRKFLIDV-----GNGNAVETVFIPEDDRGTLCISTQAGCAL 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNL+ EI+ Q+ A LG G E R ISN+V+MG
Sbjct: 114 DCAFCSTGKQGFNRNLSVAEIIGQLWQANHALGAVHGDE-----------RVISNVVLMG 162
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+N +L + D S+RRIT+STSG VP + R+G+E V LA+SLHA
Sbjct: 163 MGEPLANFENSVAALKLMLDDNAYGLSRRRITVSTSGLVPVMDRLGDECPVALAVSLHAP 222
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVPIN+KYPL+ L+ AC+ Y + ITFEY+ML GIND+ A L+ ++
Sbjct: 223 NDKLRDQLVPINQKYPLKELMAACQRYLEKAPRDFITFEYIMLDGINDTDAHARELLALV 282
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K + K NLIPFNP+PG + S + + F++ + ++G + R RG DI AACGQL
Sbjct: 283 KSVHCKFNLIPFNPFPGSPFRRSPAERVRHFADILMQAGIVTTTRKTRGDDIDAACGQLA 342
Query: 367 SLSKRIPKV 375
+ K
Sbjct: 343 GQVQDKTKR 351
>gi|144899244|emb|CAM76108.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 380
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 205/387 (52%), Positives = 261/387 (67%), Gaps = 20/387 (5%)
Query: 1 MN-FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
MN +K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+
Sbjct: 1 MNDSSQKTNLIGLSRDQLTAEMASIG----EKPFRAKQLWHWLYNRGETDFLKMTSISKV 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLC 117
++ L + + + P + E S D TRKWLL+F E ETVYIP++ RG +C
Sbjct: 57 MQERLAERYVVRRPLVERELTSVDTTRKWLLKF-----DDGNEAETVYIPDEDEQRGAVC 111
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQVGC+LTC FC+TGTQ LVRNLTA EI+ Q +LAR G++P +D R
Sbjct: 112 ISSQVGCTLTCKFCHTGTQLLVRNLTAAEIVGQFMLARDSYGEWPTPDDTT--------R 163
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+SNIVMMGMGEPL NFDNV +L I D G+ S+RRITLSTSG VP + R G E+GV
Sbjct: 164 LLSNIVMMGMGEPLYNFDNVATALKIIMDGEGIGISRRRITLSTSGVVPMMGRAGAELGV 223
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLHAV++++RN ++PIN+KYPL+ L+ ACR YPG SNARRITFEYVMLKGINDS
Sbjct: 224 NLAISLHAVTDEVRNQIMPINKKYPLKELMQACRDYPGASNARRITFEYVMLKGINDSLA 283
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L++++KG+PAK NLIPFNPWPG +Y CS +DI FS+ I+ +GYS+PIR RG D
Sbjct: 284 DARELLRLVKGLPAKFNLIPFNPWPGSDYECSSMRDIRAFSDLIQDNGYSAPIRKSRGAD 343
Query: 358 ILAACGQLKSLSKRIPKVPRQEMQITG 384
ILAACGQL+S S+R E G
Sbjct: 344 ILAACGQLRSESQRQKCSRLNERVAAG 370
>gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
Length = 378
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 168/383 (43%), Positives = 230/383 (60%), Gaps = 18/383 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +KK +L+G+ +++ E IG + R +Q+ KWI+ +G DF M+D+S+ +
Sbjct: 8 MTDVKKVNLLGLPPKKMIEFFESIG----EKKFRATQVLKWIHQKGADDFDQMTDVSKAL 63
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
RH L I PE+V + IS DGTRKW++R GG +ETV IP+ R TLCVSS
Sbjct: 64 RHKLKDISEIRAPEVVSQNISNDGTRKWIIRTEG---GGNNCVETVLIPDGDRATLCVSS 120
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL CSFC TG Q RNLT E++ QV +A G F P+ R+++
Sbjct: 121 QVGCSLDCSFCSTGKQGFNRNLTPSEVIGQVWVAIKSFGPFD----------PNGPRRVT 170
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NF+ V ++++ D SKRR+TLSTSG VP I + E V LA
Sbjct: 171 NVVMMGMGEPLMNFEPVVDAMTLMMDDNAYGMSKRRVTLSTSGVVPKIYELAERTDVSLA 230
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDA 299
ISLHA +N+LR++LVPIN+KYP+ L+ AC+HY L + R IT EY M+ G+NDS A
Sbjct: 231 ISLHAPTNELRDVLVPINKKYPINELLGACQHYLTSLPDKRHITIEYTMMAGVNDSEEQA 290
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L K+LK + KINLIPFNP+P Y + F + + GY+ +RT RG DI
Sbjct: 291 RALSKLLKTLECKINLIPFNPFPNSGYDKPSNNQVRRFQKVLADDGYTVTVRTTRGDDID 350
Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
AACGQL + ++ +++
Sbjct: 351 AACGQLVGDFHDKTRRSQKYIEL 373
>gi|300704417|ref|YP_003746020.1| hypothetical protein RCFBP_20221 [Ralstonia solanacearum CFBP2957]
gi|299072081|emb|CBJ43413.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum CFBP2957]
Length = 383
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 151/378 (39%), Positives = 217/378 (57%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ +
Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLVDV-----GAGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGRG-------PKDDRVIT 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ ++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSHDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A
Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360
>gi|295676905|ref|YP_003605429.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002]
gi|295436748|gb|ADG15918.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002]
Length = 383
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 150/384 (39%), Positives = 218/384 (56%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSPSVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P +V + IS DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 57 REKLKGRATITMPGVVSDHISSDGTRKWLIDV-----GNGNAVETVYIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGDAGGRAIGGDGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADVPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++ LR++LVP+N+KYPL L+ AC Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHASNDALRDVLVPLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI
Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL K ++ + +
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375
>gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
9799]
gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
9799]
Length = 372
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 163/385 (42%), Positives = 220/385 (57%), Gaps = 22/385 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K +L+ + R+ + ++G R Q+ KWIY G DF+ M++I++ +R
Sbjct: 1 MTDKINLLNLDRKAMRAFFAEMG----EKPFRADQVMKWIYHFGADDFEQMTNINKALRA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQV
Sbjct: 57 KLAERAVIVAPEISTSQHSSDGTIKFAIDV-----GNGQEVETVYIPESDRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L CSFC T Q RNL+ EI+ QV LG + + R ISN+
Sbjct: 112 GCALECSFCSTAQQGFNRNLSVAEIIGQVWRVAKYLG----------LKNETGERPISNV 161
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAIS
Sbjct: 162 VMMGMGEPLLNLSNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAIS 221
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDAL 300
LHA +++LR++LVP+N+KY +E + + R Y S N R+T EYVML INDS A
Sbjct: 222 LHAPNDELRDVLVPVNKKYNIETFLASVRTYLTKSYANKGRVTVEYVMLDHINDSTDQAH 281
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K++K P KINLIPFNP+PG Y S I F++ + G + +R RG DI A
Sbjct: 282 ELAKVMKDTPCKINLIPFNPYPGSPYGKSSNSRIDRFAKVLMEYGMTVIVRKTRGDDIDA 341
Query: 361 ACGQLKSLSK-RIPKVPRQEMQITG 384
ACGQL + R ++ ++ MQ G
Sbjct: 342 ACGQLVGDVRDRTKRMLKKRMQEDG 366
>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
gi|205829787|sp|A1TZP7|RLMN_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
Length = 369
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 160/380 (42%), Positives = 229/380 (60%), Gaps = 21/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+GM + +LE +G R R Q+ +W++ RG+ DF M+++S+ +R L
Sbjct: 6 EKVNLLGMPKAKLEAFFETLG----EKRFRAQQVLQWMHQRGVDDFDQMTNMSKSLREQL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+V ++ S DGTRKW++R +ETV IP+ RGTLCVSSQ+GC
Sbjct: 62 KEVAEIRGPEVVYDETSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C+FC TG + RNLTA EI+ QV +AR M R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARRAF-----------MPFDPNDRPITNVVM 165
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++++ + + SKRR+TLSTSG VP + R+GE V LAISLH
Sbjct: 166 MGMGEPLLNFENVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLH 225
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303
A +++LRN LVP+N+KYP+ L+ A R Y L + R+ T EY +++G+ND P A L+
Sbjct: 226 APNDELRNQLVPLNKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELV 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+P KINLIPFNP+P ++ F + +GY + IRT RG DI AACG
Sbjct: 286 VLLKGLPCKINLIPFNPFPESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QL + + ++ + +
Sbjct: 346 QLVGRVEDRTRRSQRYIAVQ 365
>gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815]
gi|205829685|sp|B2JIV3|RLMN_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815]
Length = 382
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 151/379 (39%), Positives = 214/379 (56%), Gaps = 10/379 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSPTVNLLDLDAAGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI P +V + IS DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 57 REKLKGRASITMPPVVSDHISSDGTRKWLVDV-----GNGNAVETVYIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNL EI+ Q+ +A L G G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLGTGEIIGQLRMAEFALRASRGTAGGRATGGDGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P L S + I F++ + +G + +R RG DI
Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLLRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL K ++ +
Sbjct: 352 AACGQLAGAVKDRTRLAER 370
>gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS]
gi|205829751|sp|A8A323|RLMN_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS]
Length = 384
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEVDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
Length = 384
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ATCC 35469]
gi|254807182|sp|B7LKC1|RLMN_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
Length = 384
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|83945705|ref|ZP_00958050.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii
HTCC2633]
gi|83850906|gb|EAP88766.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii
HTCC2633]
Length = 391
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 196/366 (53%), Positives = 265/366 (72%), Gaps = 16/366 (4%)
Query: 9 LIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L+GM R +L +AL++ G+ ++ +MR Q+W+WIY G+ +F M+++S+++R L
Sbjct: 20 LVGMTRPQLRDALVEHGLVDEKKAKMRAEQLWRWIYHYGVTEFDQMTNVSKDLRQQLEAK 79
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSL 126
F++ PEI + ++S DGTRK+L+R + VE+ETV+IP +R G LCVSSQVGC+L
Sbjct: 80 FTLARPEITERQVSVDGTRKYLIRMAS-----GVEVETVFIPAVARSGALCVSSQVGCTL 134
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC+TGTQ LVRNLTA EI+ QV++AR LG++P + R+I+NIV MG
Sbjct: 135 NCTFCHTGTQPLVRNLTAAEIVAQVMIARDDLGEWPTS---------NEDRQITNIVFMG 185
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N D+V S+ + SD G+ +RR T+STSG VP I +GE MLAISLHA
Sbjct: 186 MGEPLYNLDHVSDSIDVISDHEGIGIGRRRTTVSTSGVVPKIPELGERTRSMLAISLHAT 245
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++LRN LVP+N+KYP+ L+DA R YP LSN++R+TFEYVMLKG+NDS +A L+K+L
Sbjct: 246 NDELRNELVPLNKKYPIAELMDAIRAYPDLSNSKRVTFEYVMLKGVNDSLAEARALVKLL 305
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIPAKINLIPFNPWPG Y CSD I F++ + R+GY+SPIRTPRG DI AACGQLK
Sbjct: 306 KGIPAKINLIPFNPWPGSPYECSDWDQIEAFADVVNRAGYASPIRTPRGRDIFAACGQLK 365
Query: 367 SLSKRI 372
S S++I
Sbjct: 366 SESQKI 371
>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
coli str. K-12 substr. MG1655]
gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
Ss046]
gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
Sb227]
gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
gi|89109323|ref|AP_003103.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UTI89]
gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
gi|117624746|ref|YP_853659.1| hypothetical protein APECO1_4007 [Escherichia coli APEC O1]
gi|157157838|ref|YP_001463839.1| hypothetical protein EcE24377A_2801 [Escherichia coli E24377A]
gi|170019200|ref|YP_001724154.1| hypothetical protein EcolC_1160 [Escherichia coli ATCC 8739]
gi|170082127|ref|YP_001731447.1| hypothetical protein ECDH10B_2683 [Escherichia coli str. K-12
substr. DH10B]
gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SMS-3-5]
gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
CDC 3083-94]
gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SE11]
gi|215487867|ref|YP_002330298.1| hypothetical protein E2348C_2800 [Escherichia coli O127:H6 str.
E2348/69]
gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI1]
gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
S88]
gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ED1a]
gi|218696144|ref|YP_002403811.1| hypothetical protein EC55989_2802 [Escherichia coli 55989]
gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI39]
gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238901682|ref|YP_002927478.1| putative enzyme [Escherichia coli BW2952]
gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
str. REL606]
gi|256017335|ref|ZP_05431200.1| hypothetical protein ShiD9_00370 [Shigella sp. D9]
gi|256021797|ref|ZP_05435662.1| hypothetical protein E4_00375 [Escherichia sp. 4_1_40B]
gi|260845147|ref|YP_003222925.1| putative enzyme [Escherichia coli O103:H2 str. 12009]
gi|260856611|ref|YP_003230502.1| putative enzyme [Escherichia coli O26:H11 str. 11368]
gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|307139152|ref|ZP_07498508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H736]
gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|549552|sp|P36979|RLMN_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123084401|sp|Q1R8L6|RLMN_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123147826|sp|Q0TEW8|RLMN_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123728531|sp|Q32D45|RLMN_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123755559|sp|Q31XX3|RLMN_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123773477|sp|Q3YZ35|RLMN_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829749|sp|A7ZPW0|RLMN_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829750|sp|B1XAZ2|RLMN_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829752|sp|A1AE55|RLMN_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829753|sp|B1IWE4|RLMN_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829754|sp|B1LNH2|RLMN_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829888|sp|B2TXU2|RLMN_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807172|sp|B7UGW3|RLMN_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807173|sp|B7MI02|RLMN_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807174|sp|B7LDA9|RLMN_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807176|sp|B7NRG7|RLMN_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807177|sp|B7N304|RLMN_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807178|sp|B7M7M1|RLMN_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807180|sp|B6I589|RLMN_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|259491986|sp|C4ZX92|RLMN_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
gi|1788865|gb|AAC75570.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
coli str. K-12 substr. MG1655]
gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
[Escherichia coli 536]
gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli 1357]
gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11]
gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 384
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|295691362|ref|YP_003595055.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756]
gi|295433265|gb|ADG12437.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756]
Length = 403
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 196/379 (51%), Positives = 266/379 (70%), Gaps = 16/379 (4%)
Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L G+ R +L AL++ G+ +MR +QI++W++ RG+ DF MSD+++E R L
Sbjct: 25 VNLSGLTRPQLIAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFASMSDVAKETRARLA 84
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
+ F+I PEIV+ ++S DGTRKWL+R +E+E+V+IP R G LCVSSQVGC
Sbjct: 85 EAFTIARPEIVERQVSQDGTRKWLIRM-----APGIEVESVFIPGVGRAGALCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ LVRNLTA EI+ QV +A+ LG++P R++SNIV
Sbjct: 140 TLNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLGEWPS---------DKEDRQLSNIVF 190
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N V ++ I SD+ G+ S+RRIT+STSG VP + ++G MLAISLH
Sbjct: 191 MGMGEPLYNLGQVADAIEIISDNEGIGISRRRITVSTSGVVPMLEKLGSTTQAMLAISLH 250
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR++LVP+N+KYP+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+
Sbjct: 251 ATNDALRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPPEARALVN 310
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KGIPAKINLIPFNPWPG +Y CSD I F+ + ++GYSSPIRTPRG DILAACGQ
Sbjct: 311 LIKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQ 370
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+++ +++ +
Sbjct: 371 LKSESEKVRASALRKLSLA 389
>gi|167031908|ref|YP_001667139.1| radical SAM protein [Pseudomonas putida GB-1]
gi|205829825|sp|B0KPI4|RLMN_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|166858396|gb|ABY96803.1| radical SAM enzyme, Cfr family [Pseudomonas putida GB-1]
Length = 381
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 167/375 (44%), Positives = 223/375 (59%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+
Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL++L+++C Y +R+ T EY +LK +ND P A +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347
Query: 365 LKSL-SKRIPKVPRQ 378
L + R + R
Sbjct: 348 LVGQVNDRTRRSERY 362
>gi|26987586|ref|NP_743011.1| radical SAM enzyme, Cfr family [Pseudomonas putida KT2440]
gi|148546124|ref|YP_001266226.1| radical SAM protein [Pseudomonas putida F1]
gi|81586431|sp|Q88PK0|RLMN_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829824|sp|A5VYT2|RLMN_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|24982262|gb|AAN66475.1|AE016276_10 conserved hypothetical protein TIGR00048 [Pseudomonas putida
KT2440]
gi|148510182|gb|ABQ77042.1| radical SAM enzyme, Cfr family [Pseudomonas putida F1]
gi|313497219|gb|ADR58585.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
BIRD-1]
Length = 381
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 167/375 (44%), Positives = 223/375 (59%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+
Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL++L+++C Y +R+ T EY +LK +ND P A +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347
Query: 365 LKSL-SKRIPKVPRQ 378
L + R + R
Sbjct: 348 LVGQVNDRTRRSERY 362
>gi|194290009|ref|YP_002005916.1| hypothetical protein RALTA_A1912 [Cupriavidus taiwanensis LMG
19424]
gi|193223844|emb|CAQ69853.1| Conserved hypothetical protein; radical SAM enzyme, Cfr family
domain; putative iron binding enzyme [Cupriavidus
taiwanensis LMG 19424]
Length = 384
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 153/378 (40%), Positives = 218/378 (57%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN L +L+ + + L ++G R Q+ +WI+ G F MSD+++ +
Sbjct: 1 MNDL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHHYGASRFDAMSDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I P ++ + +S DGTRKWLL G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRAEIRAPAVITDNLSADGTRKWLLDV-----GEGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A + + G P R IS
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMREQLGRG-------PKDDRVIS 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND A
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+K++ +P K NLIPFNP+P S+ + I F++ + +G + IR RG DI A
Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFAQVLMDAGVVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360
>gi|58038729|ref|YP_190693.1| putative Fe-S-cluster redox protein [Gluconobacter oxydans 621H]
gi|81352583|sp|Q5FUA9|RLMN_GLUOX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|58001143|gb|AAW60037.1| Putative Fe-S-cluster redox enzyme [Gluconobacter oxydans 621H]
Length = 407
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 178/370 (48%), Positives = 249/370 (67%), Gaps = 14/370 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ REEL + +IG R Q+W WIY +G DF M+ I++ ++ L
Sbjct: 47 RRDLVGLSREELAALMTEIG----EKPFRAKQLWHWIYHQGATDFSAMTTIAKPMQAKLA 102
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF + P E+ S D TRK+L RF V I + RG +C+SSQVGC+
Sbjct: 103 EHFVVSRPTTATEQTSVDETRKFLFRFRDGQEAETVYIPD---RREDRGAVCISSQVGCT 159
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C+FC+TGTQKLVRNL EI+ Q + AR G++P + R +S IV+M
Sbjct: 160 LSCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPSPS-------ADMPRYLSTIVLM 212
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++NV K++ I D G++ S+RRITLSTSG VP + R G+E+G+ LAISLHA
Sbjct: 213 GMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHA 272
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+N+LR+ +VP+NRKYP+E LI ACR YP SN+RRITFEY+ML+G+NDS DA L+++
Sbjct: 273 VTNELRDQIVPLNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRL 332
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++ +PAK+NLIPFNPWPG ++ S ++ + F+ + +G++SPIRTPRG DILAACGQL
Sbjct: 333 IRDLPAKVNLIPFNPWPGSDFQPSTRQQLTKFANIVMDAGFASPIRTPRGQDILAACGQL 392
Query: 366 KSLSKRIPKV 375
K+ S+R +
Sbjct: 393 KTESERQRRS 402
>gi|312962908|ref|ZP_07777395.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens WH6]
gi|311282935|gb|EFQ61529.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens WH6]
Length = 382
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 169/375 (45%), Positives = 226/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ GI DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGIDDFDAMTNVSKALRDKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 TIAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVISAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY +LK IND A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAIEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|299067263|emb|CBJ38460.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum CMR15]
Length = 383
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 151/378 (39%), Positives = 217/378 (57%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ +
Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRATIQAPAVISDNLSSDGTRKWLVDV-----GAGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGRG-------PKDDRVIT 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ ++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSHDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELVAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A
Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360
>gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica ST-640]
gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 364
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 161/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +WI+ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQANIGIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ +VP+N+KYPL+ L+ ACR Y + ITFEYVML GIND + A LI +
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S +++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
Length = 383
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 152/384 (39%), Positives = 218/384 (56%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSPSVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P +V + IS DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 57 REKLKGRATITMPGVVSDHISSDGTRKWLIDV-----GNGNAVETVYIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNLT EI+ Q+ +A L G M G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGDAGGRAMGGDGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++ LR+ LVP+N+KYPL L+ AC Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHAPNDALRDELVPLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P + S Q+ I F++ + +G + +R RG DI
Sbjct: 292 RQLLAVTRDVPCKFNLIPFNPFPESGLIRSKQEQIKRFAQVLIDAGVVTTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL K ++ + +
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375
>gi|17545931|ref|NP_519333.1| hypothetical protein RSc1212 [Ralstonia solanacearum GMI1000]
gi|81505540|sp|Q8Y032|RLMN_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|17428226|emb|CAD14914.1| conserved hypothetical protein 48 [Ralstonia solanacearum GMI1000]
Length = 383
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ +
Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLVDV-----GAGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGRG-------PKDDRVIT 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSQDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A
Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360
>gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS185]
gi|205829879|sp|A6WQQ0|RLMN_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185]
Length = 373
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 167/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAINV-----GQGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVPIN+KYPL+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|127512219|ref|YP_001093416.1| hypothetical protein Shew_1287 [Shewanella loihica PV-4]
gi|205829882|sp|A3QCF9|RLMN_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|126637514|gb|ABO23157.1| radical SAM enzyme, Cfr family [Shewanella loihica PV-4]
Length = 373
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 163/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ L ++G R Q+ KW+Y G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ PEI + S DGT K+ + G E+ETVYIPE+ R TLCVSSQVGC
Sbjct: 60 AARCEVVAPEISSYQKSADGTIKFAINV-----GNGQEVETVYIPEEDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ Q+ LG + R ISN+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FQKETGERPISNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + +G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR++LVP+N+KYPL+ + A R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDVLVPVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AELMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369
>gi|294010894|ref|YP_003544354.1| hypothetical protein SJA_C1-09080 [Sphingobium japonicum UT26S]
gi|292674224|dbj|BAI95742.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 419
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 192/381 (50%), Positives = 264/381 (69%), Gaps = 15/381 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ R ++ AL + G+ + ++R+ Q++ W+Y RG DF M+D+++ +R +
Sbjct: 31 RVDLMGLSRPQIRGALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMA 90
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+
Sbjct: 91 ERFVVGRPEVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--------EDIEGMVIPSVGR 177
L C FC+TGT +LVRNLT EI+ QV+LAR LG++P E + + GR
Sbjct: 146 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDEADDASQYSTDGR 205
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
++NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV
Sbjct: 206 MLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGV 265
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLHAV+ D+R+ LVP+N+KY +E L+ AC YPG +NARRITFEYVM+K NDS
Sbjct: 266 NLAVSLHAVTKDVRDELVPLNKKYGIEDLLQACADYPGANNARRITFEYVMIKDKNDSDA 325
Query: 298 DALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
DA L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPRG
Sbjct: 326 DARELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRG 385
Query: 356 LDILAACGQLKSLSKRIPKVP 376
DI+AACGQLKS S++ +
Sbjct: 386 RDIMAACGQLKSASEKKSRAE 406
>gi|258542583|ref|YP_003188016.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01]
gi|256633661|dbj|BAH99636.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01]
gi|256636720|dbj|BAI02689.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-03]
gi|256639773|dbj|BAI05735.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-07]
gi|256642829|dbj|BAI08784.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-22]
gi|256645884|dbj|BAI11832.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-26]
gi|256648937|dbj|BAI14878.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-32]
gi|256651924|dbj|BAI17858.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|256654981|dbj|BAI20908.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-12]
Length = 408
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 185/370 (50%), Positives = 249/370 (67%), Gaps = 14/370 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ R+EL + L +IG RT Q+W WIY +G+ DF MS I++ ++ L
Sbjct: 47 RRDLVGLSRDELTDILTEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE + S D TRK+L RF V I + RG +C+SSQVGC+
Sbjct: 103 ERFIIGRPEAATVQTSSDETRKFLFRFRDGQEAETVYIPD---RREDRGAVCISSQVGCT 159
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV+M
Sbjct: 160 LSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIVLM 212
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G+E+G+ LA+SLHA
Sbjct: 213 GMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHA 272
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V NDLR+ +VP+NRKYP+E ++ ACR YP SNARRITFEY+ML+GINDS DA L+++
Sbjct: 273 VRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGINDSEADARELVRL 332
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAK+NLIPFNPWPG +Y S ++ F+E + +G++SPIRTPRG DILAACGQL
Sbjct: 333 ISGIPAKVNLIPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACGQL 392
Query: 366 KSLSKRIPKV 375
K+ S+R
Sbjct: 393 KTASERARAS 402
>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
Length = 384
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|330936987|gb|EGH41085.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 382
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 167/375 (44%), Positives = 226/375 (60%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ + L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALSEKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVP+N+KYPL++L+++CR Y +R+ T EY MLK IND A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQ 378
L R + R
Sbjct: 348 LVGQVMDRTRRSERY 362
>gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 388
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 218/383 (56%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R
Sbjct: 17 NKNGKINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLR 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ
Sbjct: 73 NKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A
Sbjct: 237 SLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 297 HELAALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379
>gi|83747944|ref|ZP_00944975.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
gi|207743447|ref|YP_002259839.1| hypothetical protein 48 [Ralstonia solanacearum IPO1609]
gi|83725362|gb|EAP72509.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
gi|206594844|emb|CAQ61771.1| conserved hypothetical protein 48 [Ralstonia solanacearum IPO1609]
Length = 383
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 151/378 (39%), Positives = 217/378 (57%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ +
Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLVDV-----GAGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGRG-------PKDDRVIT 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ ++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A
Sbjct: 283 ELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360
>gi|330994687|ref|ZP_08318610.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
sp. SXCC-1]
gi|329758328|gb|EGG74849.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
sp. SXCC-1]
Length = 412
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 181/372 (48%), Positives = 250/372 (67%), Gaps = 14/372 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ REEL + +++IG RT Q+W WIY +G DF MS I++ ++ L
Sbjct: 46 RRDLVGLSREELTDIMVEIG----EKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLA 101
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + P +V E+ S D TRK+L RF V I ++ RG +C+SSQVGC+
Sbjct: 102 ERFVVGRPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPD---RQEDRGAVCISSQVGCT 158
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C+FC+TGTQ LVRNL A EI+ Q + AR G++P + R +S IV+M
Sbjct: 159 LSCTFCHTGTQALVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIVLM 211
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV K++ I D G+ S+RRITLSTSG VP + + G E+G+ LA+SLHA
Sbjct: 212 GMGEPLYNYDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHA 271
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V +DLR+ +VP+NRKYP+ +I ACR YP SNARRITFEY+ML+GINDS DA L+++
Sbjct: 272 VRDDLRDEIVPLNRKYPIRDVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRL 331
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAK+NLIPFNPWPG Y S ++ + F+ + +G++SPIR PRG DILAACGQL
Sbjct: 332 ISGIPAKVNLIPFNPWPGSSYRPSTREQLERFANIVMDAGFASPIRMPRGRDILAACGQL 391
Query: 366 KSLSKRIPKVPR 377
++ S+R+ + R
Sbjct: 392 RTESQRLRRASR 403
>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
Length = 388
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 219/383 (57%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R
Sbjct: 17 NKNGKINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLR 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ
Sbjct: 73 NKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A
Sbjct: 237 SLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 297 HQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379
>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CFT073]
gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|81475264|sp|Q8FF55|RLMN_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
Length = 384
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 218/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y G SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|126175195|ref|YP_001051344.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS155]
gi|205829878|sp|A3D6W2|RLMN_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|125998400|gb|ABN62475.1| radical SAM enzyme, Cfr family [Shewanella baltica OS155]
Length = 373
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 167/385 (43%), Positives = 222/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAINV-----GQGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ILVPIN+KY L+ + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDILVPINKKYQLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|94311047|ref|YP_584257.1| hypothetical protein Rmet_2109 [Cupriavidus metallidurans CH34]
gi|123260051|sp|Q1LLI8|RLMN_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
Length = 384
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 151/378 (39%), Positives = 213/378 (56%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN L +L+ + + L ++G R Q+ +WI+ G F M+D+++ +
Sbjct: 1 MNNL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHQFGASHFDAMTDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I P + + S DGTRKWLL G +ETVYIPE +RGTLCVSS
Sbjct: 55 REKLATRAEIRSPAAISDHTSSDGTRKWLLDV-----GAGNAVETVYIPEDTRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A + + P R IS
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMR-------AQLGRGPKDERVIS 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+NRKYPL L+ ACR Y + ITFEY ML G+ND A
Sbjct: 223 VSLHASNDALRDVLVPLNRKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+K++ +P K NLIPFNP+P S+ + I F++ + +G + IR RG DI A
Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL ++ +
Sbjct: 343 ACGQLAGEVMDRTRLAER 360
>gi|226946070|ref|YP_002801143.1| hypothetical protein Avin_40320 [Azotobacter vinelandii DJ]
gi|226720997|gb|ACO80168.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 381
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 171/380 (45%), Positives = 226/380 (59%), Gaps = 21/380 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS+I + +
Sbjct: 1 MNETTKANLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNIGKAL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I PE+V + IS DGTRKW++R + +ETVYIP+ RGTLCVSS
Sbjct: 57 REKLKACAEIRGPEVVSQDISGDGTRKWVVRVASGSC-----VETVYIPQAGRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GCSL CSFC TG Q +LTA EI+ QV +A G PG D R I+
Sbjct: 112 QAGCSLDCSFCSTGKQGFNSDLTAAEIIGQVWIANKSFGTVPGKID----------RAIT 161
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NFDN ++ I D +G SKR++TLSTSG P I +G+ I V LA
Sbjct: 162 NVVMMGMGEPLMNFDNAVAAMQIMMDDLGYGISKRKVTLSTSGVAPMIDELGKIIDVSLA 221
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDA 299
+SLHA +++LRN LVPINRKYPL ++DACR Y +R+ T EY +LK +ND P A
Sbjct: 222 LSLHAPNDELRNRLVPINRKYPLAQVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++L+ +P KINLIPFNP+P Y I F + + ++G++ +RT RG DI
Sbjct: 282 AQMVELLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDID 341
Query: 360 AACGQLKSLS-KRIPKVPRQ 378
AACGQL R + R
Sbjct: 342 AACGQLVGQVMDRTRRSERY 361
>gi|300691809|ref|YP_003752804.1| hypothetical protein RPSI07_2165 [Ralstonia solanacearum PSI07]
gi|299078869|emb|CBJ51530.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum PSI07]
Length = 383
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 151/378 (39%), Positives = 217/378 (57%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ +
Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLVDV-----GAGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAVRKQLGRG-------PKDDRVIT 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ ++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A
Sbjct: 283 ELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360
>gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
Length = 384
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 218/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GYQRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UMN026]
gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|254807179|sp|B7N6A5|RLMN_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
Length = 384
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
ATCC BAA-895]
gi|205829699|sp|A8AD69|RLMN_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
Length = 388
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 162/379 (42%), Positives = 218/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 21 KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRGKLK 76
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPINRKY +E +DA R Y SNA R+T EYVML IND A L
Sbjct: 241 PNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379
>gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 388
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 160/384 (41%), Positives = 216/384 (56%), Gaps = 23/384 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +
Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSS
Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C FC T Q RNL EI+ QV A ++G + R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGYMIDVALA 235
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355
Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379
>gi|294140143|ref|YP_003556121.1| hypothetical protein SVI_1372 [Shewanella violacea DSS12]
gi|293326612|dbj|BAJ01343.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 379
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 168/385 (43%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ L +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 10 KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFELMTNINKGLRAKL 65
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I P+I + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 66 AARCEITAPQISSYQKSEDGTIKFAINV-----GDGQEVETVYIPEGDRATLCVSSQVGC 120
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV +G + R I+N+VM
Sbjct: 121 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIGFIKDTGE----------RPITNVVM 170
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + +G+ I V LA+S+H
Sbjct: 171 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDAIDVALAVSIH 230
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR++LVP+N+KYPLE + A R Y SN R+T EYVML INDS A L
Sbjct: 231 AANDELRDVLVPVNKKYPLEEFLAAIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 290
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC
Sbjct: 291 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 350
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 351 GQLAGDIRDRTKRLAKKRMQENQIS 375
>gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9]
gi|254807186|sp|C1DD41|RLMN_LARHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 366
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 154/379 (40%), Positives = 216/379 (56%), Gaps = 20/379 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L E +G R Q+ +W++ G DF M+D+++ +R L+
Sbjct: 2 KTNLLDFTLPALTEHFAAMG----EKPFRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLH 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ P ++ E+ S DGTRKWLL G +ETV+IPE RGTLCVSSQVGC+
Sbjct: 58 DTATVTVPSLMLEQASSDGTRKWLLDV-----GTGNRVETVFIPEDDRGTLCVSSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNL+ EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKSMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV ++ I D G S+RR+TLSTSG VP + R+ E+ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVVAAMRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R+ +VPIN+KYPL L+ AC Y + +TFEYVML IND P A L+ +
Sbjct: 222 PNDRIRDEIVPINKKYPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEHARELVAL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++ +P K NLIPFNP+P Y + + F + + +GY + +R RG DI AACGQL
Sbjct: 282 VRDVPCKFNLIPFNPFPNSGYGRASNNAVRAFRDILAEAGYITTVRKTRGEDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQITG 384
+ + + + G
Sbjct: 342 AGQVQDKTQRKVRWLDKGG 360
>gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae
Ech1591]
gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591]
Length = 392
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 161/385 (41%), Positives = 217/385 (56%), Gaps = 23/385 (5%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N +K +L+ R+++ ++G R Q+ KWIY DF M+DI++ +R
Sbjct: 21 NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVLR 76
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L I PE+VDE+ S DGT KW + +ETVYIPE+ R TLCVSSQ
Sbjct: 77 GKLQAIAEIRAPEVVDEQRSSDGTIKWAILV------DGQRVETVYIPEEDRATLCVSSQ 130
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITN 180
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A
Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHA 300
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI
Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360
Query: 360 AACGQLKSL-SKRIPKVPRQEMQIT 383
AACGQL R + +++MQ
Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQRD 385
>gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
Length = 373
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 167/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ L +G R Q+ KWIY G+ DF+ M++I++ +R L
Sbjct: 4 KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFEVMTNINKVLRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 AASCEIKAPEISSYQKSADGTIKFSINV-----GDGQEVETVYIPEGDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV +G + + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG----------FIKKTGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR++LVP+N+KYPL+ + + R Y SN R+T EYVML INDS A L
Sbjct: 225 AANDELRDVLVPVNKKYPLQEFLASIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGEDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369
>gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
Length = 364
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 162/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +WI+ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQANIGIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV SLSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTSLSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ +VP+N+KYPL+ L+ ACR Y + ITFEYVML GIND + A LI +
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S +++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ATCC BAA-894]
gi|205829756|sp|A7MGV3|RLMN_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
Length = 388
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 161/380 (42%), Positives = 217/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+ + E +G R Q+ KW+Y DF M+DI++ +R L
Sbjct: 20 EKINLLDLNRQAMREFFKTLG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKL 75
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC
Sbjct: 76 KEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGC 129
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++++R+ +VPIN+KY +E + A R Y G SNA R+T EYVML +ND A L
Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379
>gi|297183711|gb|ADI19836.1| predicted Fe-S cluster redox enzyme [uncultured alpha
proteobacterium EB000_37G09]
Length = 388
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 190/378 (50%), Positives = 260/378 (68%), Gaps = 18/378 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ SL+ + LE ++ +G+P + R Q+W W++ G+ DF M+D+ + ++ LL+
Sbjct: 24 RRSLLSFEPDALEAEMIALGLP----KFRARQLWGWVWRHGVTDFSDMTDLGKPLQALLS 79
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + P + + S DGT KWL++ E ETVYIP+ RGTLC+SSQ+GC+
Sbjct: 80 ERFHVDRPAVSRRQDSSDGTIKWLIKLS-----DGQEAETVYIPDDGRGTLCISSQIGCT 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQ+LVRNL+ +EI Q+LLA LGD+P GR+++NIV+M
Sbjct: 135 LTCSFCHTGTQRLVRNLSVDEICGQILLAMDELGDWPATRP---------GRRLTNIVLM 185
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+D V ++ I + G+ SKRRITLSTSG VP I R G ++GV LAISLHA
Sbjct: 186 GMGEPLYNYDYVASAMRIIMSNEGVGVSKRRITLSTSGIVPEITRCGNDLGVNLAISLHA 245
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V ++LRN LVPINRKY L+ LID R YPGLSNARR+T+EYVM+ G+NDS DA L+++
Sbjct: 246 VRDELRNTLVPINRKYNLKTLIDTVRAYPGLSNARRVTWEYVMIDGVNDSEADARALVRL 305
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIP+KINLIPFNPWPG +Y CS+ + I F++ + ++GY+SP+RTPRG DILAACGQL
Sbjct: 306 ISGIPSKINLIPFNPWPGTDYKCSNDETIDKFAKIVMKAGYASPVRTPRGRDILAACGQL 365
Query: 366 KSLSKRIPKVPRQEMQIT 383
KS S R+ ++
Sbjct: 366 KSDSVRLRASQMAAVRDA 383
>gi|56551928|ref|YP_162767.1| Cfr family radical SAM enzyme [Zymomonas mobilis subsp. mobilis
ZM4]
gi|81355066|sp|Q5NNQ4|RLMN_ZYMMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|56543502|gb|AAV89656.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 391
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 190/372 (51%), Positives = 258/372 (69%), Gaps = 16/372 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L
Sbjct: 27 RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+
Sbjct: 87 EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC TGT +LVRNLT EI+ Q++LAR L ++P GR ++N+VMM
Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPS---------KPEGRLLTNVVMM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+ +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++
Sbjct: 253 VTKVVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312
Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
L+ +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACG
Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372
Query: 364 QLKSLSKRIPKV 375
QLKS ++R K
Sbjct: 373 QLKSAAERQSKR 384
>gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|75481689|sp|Q57LI4|RLMN_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81362045|sp|Q5PNI4|RLMN_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81628152|sp|Q8Z4P2|RLMN_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829875|sp|A9N1Z8|RLMN_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807202|sp|B5FR66|RLMN_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807203|sp|B5R584|RLMN_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807204|sp|B5RCZ4|RLMN_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807205|sp|B4TD95|RLMN_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807206|sp|B4T0Q1|RLMN_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807207|sp|C0PYM8|RLMN_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807208|sp|B5BAY3|RLMN_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807209|sp|B4TR97|RLMN_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323208127|gb|EFZ93072.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
Length = 388
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 160/384 (41%), Positives = 217/384 (56%), Gaps = 23/384 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +
Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSS
Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C FC T Q RNL EI+ QV A ++G + R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355
Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379
>gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 386
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 160/384 (41%), Positives = 217/384 (56%), Gaps = 23/384 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +
Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSS
Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C FC T Q RNL EI+ QV A ++G + R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355
Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379
>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|81594911|sp|Q8ZN52|RLMN_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
Length = 388
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 216/383 (56%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R
Sbjct: 17 NKETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ
Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A
Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379
>gi|237654050|ref|YP_002890364.1| radical SAM protein [Thauera sp. MZ1T]
gi|237625297|gb|ACR01987.1| radical SAM enzyme, Cfr family [Thauera sp. MZ1T]
Length = 382
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 159/385 (41%), Positives = 216/385 (56%), Gaps = 13/385 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +L+ + L +G R Q+ +W++ G DF M+D+++ +
Sbjct: 1 MSTPNPVNLLDFDVDGLVAWFAGLG----EKPFRARQVMRWMHHEGCDDFDAMTDVAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I P V + IS DGTRKWLL G +ETV+IPE SRGTLCVSS
Sbjct: 57 RAKLKDLAVIRPPVPVRDSISADGTRKWLLDV-----GNANAVETVFIPETSRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG----DFPGCEDIEGMVIPSVG 176
Q GC+L C+FC TG Q RNL+A EI+ Q+ LA LLG D G
Sbjct: 112 QAGCALDCAFCSTGKQGFNRNLSAAEIIGQLWLANKLLGAARADAEEHATDLEAGEKDNG 171
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
R ISN+VMMGMGEPL NFDNV +L + D S+RR+T+STSG VP + R+ +E
Sbjct: 172 RIISNVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECP 231
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V LA+SLHA ++ LR+ LVPIN+KYPL L+ AC+ Y + +TFEYVML+G+NDS
Sbjct: 232 VALAVSLHASNDALRDRLVPINQKYPLRELMAACQRYLERAPRDFVTFEYVMLEGVNDSD 291
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+ +++ P K NLIPFNP+P + S + I F+ + +G + R RG
Sbjct: 292 AHARELVALVRDTPCKFNLIPFNPFPDSGFQRSPAERIRRFAGILIDAGIVTTTRKTRGD 351
Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381
D+ AACGQL + + + Q
Sbjct: 352 DVDAACGQLAGQVQDRTRRTVRLHQ 376
>gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
Length = 364
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 162/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ SI P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQASIEIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ ACR Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDRAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
Length = 373
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 155/383 (40%), Positives = 209/383 (54%), Gaps = 25/383 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ E L ++G R R +Q+++WI+ RG DF M+D+++ +R L
Sbjct: 3 TNLLDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKS 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I +V E +S DGT KWL G +E+V+IPE RGTLCVSSQ GC++
Sbjct: 59 RAHITALPVVTEHVSADGTVKWLFDV-----GDGNAVESVFIPEDDRGTLCVSSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL EIL Q+ A L G ED R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLDTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA
Sbjct: 164 MGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAP 223
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+NRKYP+ L+DAC Y + ITFEY ML G+ND P A LI+++
Sbjct: 224 NDPLRDNLVPLNRKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELV 283
Query: 307 KGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K NLIPFNP+P L S + F+ + +G + +R RG DI AA
Sbjct: 284 RARGDGKSWCKFNLIPFNPFPASGLLRSSAARVTEFATMLSNAGIVTTVRKTRGDDIDAA 343
Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383
CGQL K R R Q T
Sbjct: 344 CGQLAGDVKDRTRAAERMAKQRT 366
>gi|260752519|ref|YP_003225412.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258551882|gb|ACV74828.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 391
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 190/372 (51%), Positives = 258/372 (69%), Gaps = 16/372 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L
Sbjct: 27 RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+
Sbjct: 87 EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC TGT +LVRNLT EI+ Q++LAR L ++P GR ++N+VMM
Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPS---------KPEGRLLTNVVMM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+ +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++
Sbjct: 253 VTKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312
Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
L+ +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACG
Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372
Query: 364 QLKSLSKRIPKV 375
QLKS ++R K
Sbjct: 373 QLKSAAERQSKR 384
>gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134]
gi|123732898|sp|Q46ZI0|RLMN_RALEJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|72119190|gb|AAZ61453.1| Conserved hypothetical protein 48 [Ralstonia eutropha JMP134]
Length = 384
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 154/378 (40%), Positives = 216/378 (57%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN L +L+ + + L ++G R Q+ +WI+ G F MSD+++ +
Sbjct: 1 MNDL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHQFGASRFDAMSDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I P + + +S DGTRKWLL G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRAEIRSPAAITDNLSADGTRKWLLDV-----GNGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNLT EI+ Q+ +A + + G P R IS
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLWMAEFAMREQLGRG-------PKDDRVIS 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND A
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+K++ +P K NLIPFNP+P S+ I F++ + +G + IR RG DI A
Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360
>gi|241761759|ref|ZP_04759845.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241373673|gb|EER63233.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 391
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 190/372 (51%), Positives = 258/372 (69%), Gaps = 16/372 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L
Sbjct: 27 RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+
Sbjct: 87 EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC TGT +LVRNLT EI+ Q++LAR L ++P GR ++N+VMM
Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPS---------KPEGRLLTNVVMM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+ +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++
Sbjct: 253 VTKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312
Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
L+ +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACG
Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372
Query: 364 QLKSLSKRIPKV 375
QLKS ++R K
Sbjct: 373 QLKSAAERQSKR 384
>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|254807201|sp|B5F1A0|RLMN_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 388
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 215/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 21 KINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 76
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379
>gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
Length = 384
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
Length = 383
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 155/382 (40%), Positives = 217/382 (56%), Gaps = 22/382 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+G+ R ++E + G R Q+ KWI+ G+ DF+ M+++S+ +R L+
Sbjct: 13 RVNLLGLTRAQMEAFFAECG----EKSFRAQQVMKWIHHHGVCDFEAMTNLSKSLRAKLS 68
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + PE+V S DGTRKWL+R +E+V IP+ R TLCVSSQVGCS
Sbjct: 69 ERACVRPPEVVSRHDSADGTRKWLVRSI-----EGGLVESVLIPDGDRATLCVSSQVGCS 123
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LTA +I+ QV LA F P R ++N+VMM
Sbjct: 124 LDCSFCSTGKQGFERDLTASDIIGQVWLAIDSFDAF----------QPGKDRVVTNVVMM 173
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFD V ++ + D + SKRR+TLSTSG VP + ++ E V LA+SLHA
Sbjct: 174 GMGEPLLNFDAVVSAMDLMMDDLAYGLSKRRVTLSTSGVVPALDKLAEVSCVSLAVSLHA 233
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
++ LRN LVPIN+KYP+ L+ + + Y N R+ +T EY ++ G+ND P A L
Sbjct: 234 PNDALRNQLVPINKKYPIAELLASAQRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELA 293
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK P KINLIPFN +PG Y + F + + +G+ +RT RG DI AACG
Sbjct: 294 VLLKNFPCKINLIPFNAFPGSSYQRPSGNAVSRFWQVLIDAGFIVTVRTTRGDDISAACG 353
Query: 364 QLKSL-SKRIPKVPRQEMQITG 384
QL R + R + + G
Sbjct: 354 QLVGDVVDRTKRSQRHKAALEG 375
>gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
Length = 388
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 161/383 (42%), Positives = 218/383 (56%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R
Sbjct: 17 NKNGKINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLR 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ
Sbjct: 73 NKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGV----------RPITN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML IND A
Sbjct: 237 SLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 297 HQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379
>gi|83310223|ref|YP_420487.1| Fe-S-cluster redox protein [Magnetospirillum magneticum AMB-1]
gi|82945064|dbj|BAE49928.1| Predicted Fe-S-cluster redox enzyme [Magnetospirillum magneticum
AMB-1]
Length = 546
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 195/371 (52%), Positives = 256/371 (69%), Gaps = 19/371 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L
Sbjct: 175 SKTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGAL 230
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQV 122
+ + + P + E IS D TRKWLL+F E ETVYIP+ + RG +C+S+QV
Sbjct: 231 AERYVVRRPGVTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEERGAVCISTQV 285
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTC FC+TGTQ LVRNL+A EI+ Q ++AR G++P +D GR++SNI
Sbjct: 286 GCTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDDG--------GRQLSNI 337
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V+MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+S
Sbjct: 338 VVMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVS 397
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS DA L
Sbjct: 398 LHAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARAL 457
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAAC
Sbjct: 458 LKLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAAC 517
Query: 363 GQLKSLSKRIP 373
GQL+S S+R
Sbjct: 518 GQLRSESQRER 528
>gi|114797352|ref|YP_762004.1| radical SAM protein [Hyphomonas neptunium ATCC 15444]
gi|122942041|sp|Q0BWY9|RLMN_HYPNA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|114737526|gb|ABI75651.1| radical SAM enzyme, Cfr family [Hyphomonas neptunium ATCC 15444]
Length = 387
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 193/379 (50%), Positives = 261/379 (68%), Gaps = 15/379 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L G+ L+ + +G+ + MR QI +WI+ G DF M+DI++++R L
Sbjct: 17 KKRLTGLSVPALKAEMEALGLEPKAANMRARQIRRWIHHFGTTDFAAMTDIAKDLRAQLA 76
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
+ F + PEI D ++S DGT+KWL R G +E E+VYIP+ + G LCVSSQVGC
Sbjct: 77 EKFEVERPEIADHQVSRDGTQKWLTR-----YGPGIEGESVYIPDVGKAGALCVSSQVGC 131
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQ LVRNLTA EI+ QV++AR L ++P R+++NIV
Sbjct: 132 TLNCTFCHTGTQALVRNLTAAEIVQQVIIARDALSEWPSSI---------EERRLTNIVF 182
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N DNV +++ SD G++ +RRIT+ST+G P I +GE G MLAISLH
Sbjct: 183 MGMGEPLYNLDNVAEAIDTISDGDGMAIGRRRITVSTAGVAPKIPELGERTGAMLAISLH 242
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLRN LVP+NRKY ++ L DA R YPGL NA+R+TFEYVMLKGIND+ +A +L+K
Sbjct: 243 ATNNDLRNELVPLNRKYDIQTLFDAIRAYPGLGNAKRVTFEYVMLKGINDTLAEARDLVK 302
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KG+P+KINLIPFNPWPG Y CSD + I F+E + R+GY+SPIRTPRG DILAACGQ
Sbjct: 303 LMKGVPSKINLIPFNPWPGSPYECSDWETIEEFAEVLNRAGYASPIRTPRGRDILAACGQ 362
Query: 365 LKSLSKRIPKVPRQEMQIT 383
L+S S ++ ++ Q +
Sbjct: 363 LRSESVKVRASELRKQQAS 381
>gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 364
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +WI+ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQANIGIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG V + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDYGYGLSRRRVTVSTSGMVSQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ +VP+N+KYPL+ L+ ACR Y + ITFEYVML G+ND + A LI +
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGVNDKAQHAHELINL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S +++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|104780237|ref|YP_606735.1| radical SAM protein [Pseudomonas entomophila L48]
gi|122985951|sp|Q1IEI4|RLMN_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|95109224|emb|CAK13921.1| putative radical SAM enzyme, Cfr family [Pseudomonas entomophila
L48]
Length = 379
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 167/375 (44%), Positives = 222/375 (59%), Gaps = 21/375 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 7 KINLLGLTLAEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKVLREKLE 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+
Sbjct: 63 AVAEIRGPEVVSEDISADGTRKWVVRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I + +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVPIN+KYPL+ML+++C Y +R+ T EY +LK +ND P A +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347
Query: 365 LKSL-SKRIPKVPRQ 378
L + R + R
Sbjct: 348 LVGQVNDRTRRSERY 362
>gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 388
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 159/383 (41%), Positives = 217/383 (56%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R
Sbjct: 17 NKNGKINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLR 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ
Sbjct: 73 NKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++ +R+ +VPIN+KY +E + R Y SNA R+T EYVML +ND A
Sbjct: 237 SLHAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 297 HELAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379
>gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|205829874|sp|A9MHL3|RLMN_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 388
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 215/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 21 KINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 76
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379
>gi|296158994|ref|ZP_06841822.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1]
gi|295890869|gb|EFG70659.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1]
Length = 383
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 152/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P IV + IS DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 57 REKLKGRATISMPGIVSDHISTDGTRKWLIDV-----GNSNAVETVYIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI
Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL K ++ + +
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375
>gi|171059552|ref|YP_001791901.1| radical SAM protein [Leptothrix cholodnii SP-6]
gi|205829645|sp|B1XXL6|RLMN_LEPCP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|170776997|gb|ACB35136.1| radical SAM enzyme, Cfr family [Leptothrix cholodnii SP-6]
Length = 393
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 151/387 (39%), Positives = 209/387 (54%), Gaps = 18/387 (4%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +L+ + L ++G R R Q+++WI+ RG DF MSD+++ +R
Sbjct: 1 MTAVNLLDFDLDALAAYCEQLG----EKRFRAVQLFRWIHQRGAADFGQMSDLAKSLRSK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L I ++ E S DGT KWL G +ETVYIPE R TLC+SSQ G
Sbjct: 57 LADVACIAPLRVLSEHRSSDGTIKWLFDV-----GDGNAVETVYIPEDDRATLCISSQAG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI---PSVGRKIS 180
C++ C FC TG Q RNL+ EIL Q+ A L G P+ R IS
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTAEILAQLWYAEHSLRRERAEGVSVGARAATGPASERIIS 171
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V +L + D G S+RR+T+STSG VP I R+ ++ V LA
Sbjct: 172 NVVMMGMGEPLQNYAAVLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAADLPVALA 231
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LR++LVP+NRKYPL L+ AC+ Y + ITFEY ML G+NDS A
Sbjct: 232 VSLHACDDALRDVLVPLNRKYPLAELLGACQAYLASAPRDFITFEYCMLDGVNDSDEQAR 291
Query: 301 NLIKI------LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
L+K+ + +P K NLIPFNP+P S + + F++ + G + +R R
Sbjct: 292 ALLKLVGDKGPVGRLPCKFNLIPFNPFPESGLKRSGNERVQAFAQVLIDGGLVTTVRKTR 351
Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQ 381
G DI AACGQL + +V + +
Sbjct: 352 GDDIDAACGQLAGEVQDRTRVQERMTR 378
>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
Length = 388
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 159/383 (41%), Positives = 217/383 (56%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R
Sbjct: 17 NKNGKINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLR 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ
Sbjct: 73 NKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++ +R+ +VPIN+KY +E + R Y SNA R+T EYVML +ND A
Sbjct: 237 SLHAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 297 HELAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379
>gi|326794512|ref|YP_004312332.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
mediterranea MMB-1]
gi|326545276|gb|ADZ90496.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
mediterranea MMB-1]
Length = 373
Score = 384 bits (987), Expect = e-105, Method: Composition-based stats.
Identities = 161/383 (42%), Positives = 224/383 (58%), Gaps = 18/383 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +K +L+G+ E+L E IG + R +Q+ KWI+ +G F+ M+D+S+++
Sbjct: 1 MSATQKVNLLGLSPEKLVEFFESIG----EKKFRATQVMKWIHQKGAESFEEMTDVSKKL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I PEIV++ IS DGTRKW++R +ETV IP+ R TLCVSS
Sbjct: 57 RAKLEGICEIRAPEIVEQNISTDGTRKWIIRTEGGMND---CVETVLIPDGDRATLCVSS 113
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL CSFC TG Q RNLT EI+ Q+ +A G + P+ R+++
Sbjct: 114 QVGCSLDCSFCSTGKQGFNRNLTPAEIIGQLWIAIKSFG----------PMDPNGPRRVT 163
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NF+ V ++ + SKRR+TLSTSG VP I + + V LA
Sbjct: 164 NVVMMGMGEPLMNFEPVVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYELVKRTDVSLA 223
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
ISLHA +N LR+ LVPINRKYP+E L++AC+HY +R IT EY M+ G+ND + A
Sbjct: 224 ISLHAPNNPLRDELVPINRKYPIEELLEACQHYLDNLPDKRHITIEYTMMAGVNDQEQHA 283
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +LK + K+NLIPFNP+P Y F + + GY+ +RT RG DI
Sbjct: 284 RELAHLLKDLECKVNLIPFNPFPHSGYEKPSNNQTRRFQKILADDGYTVTVRTTRGDDID 343
Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
AACGQL + ++ +++
Sbjct: 344 AACGQLVGDFHDKTRRSQKYIEL 366
>gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC
25196]
gi|123768149|sp|Q2Y6F3|RLMN_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis
ATCC 25196]
Length = 365
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 216/379 (56%), Gaps = 17/379 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + L +IG R Q+ +WI+ G DF MSD+++ +R L
Sbjct: 3 INLLDFDAKGLTGFCAEIG----EKPFRARQLLRWIHRTGEADFDAMSDLAKGLREKLAA 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+++ + + DGTRKWLL G IETVYIPE SRGTLC+SSQVGC+L
Sbjct: 59 AAVIEPPKVISDHTASDGTRKWLLSV-----GAGNGIETVYIPETSRGTLCISSQVGCAL 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNLT EI+ Q+ A L + E R I+NIVMMG
Sbjct: 114 ACAFCSTGRQGFNRNLTVAEIIGQLWWANKALTETFTSE-------AGRERPITNIVMMG 166
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV SL + D S+RR+T+STSG +P + R+ E V LA+SLHA
Sbjct: 167 MGEPLTNFENVVTSLDLMLDDNAYGLSRRRVTVSTSGIIPAMDRLRERCPVALAVSLHAP 226
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVPINRKYP+ L+ AC Y + ITFEYVML G+NDS A L++++
Sbjct: 227 NDALRDQLVPINRKYPIRELLGACERYLQSAPRDFITFEYVMLDGVNDSVAQARELVQLV 286
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ IP K+NLIPFNP+P + S + F + + +G + +R RG DI AACGQL
Sbjct: 287 RDIPCKLNLIPFNPFPDSGFRRSSANAVSRFRDVLMEAGLVTTVRKTRGDDIAAACGQLA 346
Query: 367 SLS-KRIPKVPRQEMQITG 384
+ +VPR + G
Sbjct: 347 GKVLDKTRRVPRNIAEAAG 365
>gi|307543979|ref|YP_003896458.1| hypothetical protein HELO_1390 [Halomonas elongata DSM 2581]
gi|307216003|emb|CBV41273.1| K06941 [Halomonas elongata DSM 2581]
Length = 378
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 162/378 (42%), Positives = 225/378 (59%), Gaps = 18/378 (4%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ +L+GM REE+E L IG + R +Q+ KWI+ G DF M+++S+ +R L
Sbjct: 11 QRPNLLGMTREEMEAFFLSIG----EKKFRAAQVMKWIHQEGCSDFASMTNLSKALRAQL 66
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ I P +V E S DGTRKW+L V I R TLCVSSQVGC
Sbjct: 67 SEVAEIRGPSVVYEGTSSDGTRKWVLEVEDGSYVETVLIPA---DNGKRRTLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q RNLTA EI+ QV +A + G + R ++N+VM
Sbjct: 124 SLDCSFCSTGKQGFQRNLTAAEIIGQVWVASNSFG----------PRHDTANRPVTNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N+DNV ++ + D G S SKRR+TLSTSG VP + R+G+E+ V LAISLH
Sbjct: 174 MGMGEPLLNYDNVVPAMKLMLDDNGYSLSKRRVTLSTSGVVPMLDRLGDELDVSLAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
A +++LR+ LVP+NRKY + L+DAC+ Y + R +T EY ++K +ND A L
Sbjct: 234 AANDELRSELVPLNRKYNIRTLLDACQRYLAKCDDTRMVTIEYTLIKDVNDQQEHARQLA 293
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L+ +P+KINLIPFNP+P Y + + F + + GY++PIR+ RG DI AACG
Sbjct: 294 ELLQELPSKINLIPFNPFPHSGYETPSRNQVKRFQQWLADLGYTAPIRSTRGDDIDAACG 353
Query: 364 QLKSLSKRIPKVPRQEMQ 381
QL K + + +Q
Sbjct: 354 QLVGRVKDRTRRHERYIQ 371
>gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
Length = 388
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 218/383 (56%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R
Sbjct: 17 NKNGKINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLR 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ
Sbjct: 73 NKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGV----------RPITN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A
Sbjct: 237 SLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 297 HQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMGYGFTTIVRKTRGDDID 356
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379
>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
Length = 384
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMRVFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 419
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 163/380 (42%), Positives = 219/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L
Sbjct: 51 EKINLLDLNRQQMRDLFISMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 106
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+VDE+ S DGT KW + G +ETVYIPE+ R TLCVSSQVGC
Sbjct: 107 QEIAEIRAPEVVDEQRSSDGTIKWAILV------GGQRVETVYIPEEDRATLCVSSQVGC 160
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G F R I+N+VM
Sbjct: 161 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTG----------QRPITNVVM 210
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 211 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 270
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L
Sbjct: 271 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 330
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 331 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 390
Query: 363 GQLKSL-SKRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 391 GQLAGEVVDRTKRTLKKKMA 410
>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. Sakai]
gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
O157:H7 str. EC4024]
gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209400754|ref|YP_002271987.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4115]
gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. TW14359]
gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|205829862|sp|Q8XAA4|RLMN_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807175|sp|B5Z0Y6|RLMN_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4115]
gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
Length = 384
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|307729247|ref|YP_003906471.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
gi|307583782|gb|ADN57180.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
Length = 383
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 151/384 (39%), Positives = 218/384 (56%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSSTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P IV + IS DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRATISMPGIVSDHISADGTRKWLIDV-----GNSNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNLT EI+ Q+ +A L G G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI
Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSRPEQIKRFAQVLVDAGVVTTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL K ++ + +
Sbjct: 352 AACGQLAGAVKDRTRLAERSGKAA 375
>gi|170725898|ref|YP_001759924.1| ribosomal RNA large subunit methyltransferase N [Shewanella woodyi
ATCC 51908]
gi|205829887|sp|B1KKI9|RLMN_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|169811245|gb|ACA85829.1| radical SAM enzyme, Cfr family [Shewanella woodyi ATCC 51908]
Length = 373
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 167/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ L ++G R Q+ KWIY G+ DF M++I++ +R L
Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFDEMNNINKALRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N I+ PEI + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC
Sbjct: 60 NARCEIVAPEISSFQKSEDGTIKFAINV-----GQGQEVETVYIPEDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV +G V + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG----------FVKETGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR++LVP+N+KYPLE + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369
>gi|187924520|ref|YP_001896162.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
gi|205829686|sp|B2SXT2|RLMN_BURPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|187715714|gb|ACD16938.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
Length = 383
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 152/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P IV + IS DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 57 REKLKGRATISMPGIVSDNISTDGTRKWLIDV-----GNSNAVETVYIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTAEIIGQLRMAEFALRASRGIDGGRATGGDGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI
Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL K ++ + +
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375
>gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16]
gi|123032871|sp|Q0K959|RLMN_RALEH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16]
Length = 384
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 153/378 (40%), Positives = 216/378 (57%), Gaps = 18/378 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN L +L+ + + L ++G R Q+ +WI+ G F MSD+++ +
Sbjct: 1 MNAL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHHYGASRFDAMSDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I P + + +S DGTRKWLL G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRAEIRAPAAITDHLSADGTRKWLLDV-----GQGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A + + G P R IS
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMREQLGRG-------PKDDRVIS 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND A
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+K++ +P K NLIPFNP+P S+ I F++ + +G + IR RG DI A
Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 343 ACGQLAGEVKDRTRLVER 360
>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
loihiensis L2TR]
gi|81363032|sp|Q5QYC0|RLMN_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
Length = 378
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 223/383 (58%), Gaps = 22/383 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + RE ++E ++G R Q+ KW+Y + DF M+++++ +R L
Sbjct: 7 KKVNLLDLNREGIKEFFREMG----EKPFRAEQVMKWLYHFCVDDFDEMTNLNKALREKL 62
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ +++ S DGT K+ + ++ETV+IPE R TLCVSSQVGC
Sbjct: 63 KQVAEIRAPEVREQQQSSDGTIKFAMTL-----FDGQDVETVWIPEGDRATLCVSSQVGC 117
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC TG Q RNL+ EI+ QV LLG + + + ++N+VM
Sbjct: 118 ALECTFCSTGAQGFNRNLSVAEIIGQVWRVNQLLGAYG----------KTGIKPVTNVVM 167
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ + D +G SKRR+TLSTSG VP + ++ E I VMLAISLH
Sbjct: 168 MGMGEPLLNLNNVVPAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVMLAISLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
A ++LRN +VPIN+KY +E + + R Y S A+R +T EYVML +NDS A L
Sbjct: 228 APDDELRNEIVPINKKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALA 287
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K LK P+KINLIPFNP+PG +Y S I F++ + G + +R RG DI AACG
Sbjct: 288 KTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMEYGLTVMVRKTRGDDIDAACG 347
Query: 364 QLKSLSKRIPKV--PRQEMQITG 384
QL K RQ+ Q G
Sbjct: 348 QLVGDVIDRTKRILKRQQKQRGG 370
>gi|329115338|ref|ZP_08244092.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
pomorum DM001]
gi|326695317|gb|EGE47004.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
pomorum DM001]
Length = 408
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 184/369 (49%), Positives = 249/369 (67%), Gaps = 14/369 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ R+EL + L++IG RT Q+W WIY +G+ DF MS I++ ++ L
Sbjct: 47 RRDLVGLSRDELTDILIEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE + S D TRK+L RF V I + RG +C+SSQVGC+
Sbjct: 103 ERFIIGRPEAATVQTSSDSTRKFLFRFRDGQEAETVYIPD---RREDRGAVCISSQVGCT 159
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV+M
Sbjct: 160 LSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIVLM 212
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G+E+G+ LA+SLHA
Sbjct: 213 GMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHA 272
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V NDLR+ +VP+NRKYP+E ++ ACR YP SNARRITFEY+ML+G+NDS DA L+++
Sbjct: 273 VRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRL 332
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAK+NLIPFNPWPG Y S ++ F+E + +G++SPIRTPRG DILAACGQL
Sbjct: 333 ISGIPAKVNLIPFNPWPGSAYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACGQL 392
Query: 366 KSLSKRIPK 374
K+ S+R
Sbjct: 393 KTASERARA 401
>gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1]
gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 410
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 166/379 (43%), Positives = 229/379 (60%), Gaps = 20/379 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+GM R ELE+ + +G R Q+ KWI+ G+ DF M+++S+++R L
Sbjct: 6 EKANLLGMTRRELEDFFVSLG----EKPFRAHQVMKWIHFFGVDDFDQMTNVSRDLREKL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I P I E IS DGTRKW++R +ETV+IP+ +RGTLCVSSQVGC
Sbjct: 62 KAVAVIPAPAISYENISKDGTRKWVIRL-----DNGNAVETVFIPDGNRGTLCVSSQVGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q R+LTA EI+ Q+ +A G + R I+N+VM
Sbjct: 117 SLDCSFCSTGKQGFQRDLTAAEIIAQLWVANRSFG----------VPDNKGHRNITNVVM 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N DNV ++ I D +G +++R+TLSTSG VP + + + I V LA+SLH
Sbjct: 167 MGMGEPLLNLDNVVSAMEIMKDDLGYGVARKRVTLSTSGVVPKMYELFDRIDVSLAVSLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNLI 303
A ++ LR+ L+PINRKYPL L+ ACR+Y N RR+T EYV+L GIND+ A L+
Sbjct: 227 APNDTLRDELMPINRKYPLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTFAHAAELV 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L+ +P+KINLIPFNP+P Y + + F E + ++ Y + IRT RG DI AACG
Sbjct: 287 ELLRDVPSKINLIPFNPFPHAPYKRPNGYRVKAFQEVLLKADYVTTIRTTRGDDIDAACG 346
Query: 364 QLKSLSKRIPKVPRQEMQI 382
QL + + Q Q
Sbjct: 347 QLVGQVQDRTRRQAQWSQQ 365
>gi|94501127|ref|ZP_01307650.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
gi|94426703|gb|EAT11688.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
Length = 378
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 161/376 (42%), Positives = 223/376 (59%), Gaps = 21/376 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+G+ +++++ +++G R QI KWI+ GI +F M+++S+ +R L
Sbjct: 6 EKVNLLGLSPKKMKDFFVELG----EKPFRAQQILKWIHQVGIDNFDDMTNVSKVMREKL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ YPE+V IS DGT+KW++R P G +ETVYIPE RGTLCVSSQ+GC
Sbjct: 62 KDVATVQYPEVVFHDISKDGTKKWVMRMP-----GGSSVETVYIPEGDRGTLCVSSQIGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q R+L+ EI+ QV +A RKI+N+VM
Sbjct: 117 SLDCSFCSTGKQGFNRDLSVAEIIGQVYVAAKSFDK----------PGEKRERKITNVVM 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV ++ + D SKRR+TLSTSG VP + + + V LA+SLH
Sbjct: 167 MGMGEPLMNFDNVVDAMDLMMDDFCYGLSKRRVTLSTSGVVPKLYDLADVSDVSLAVSLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303
A +++LRN LVPIN+KYP++ L+ AC HY LS+ R++T EY ++ +ND A L
Sbjct: 227 APNDELRNELVPINKKYPIKDLMAACNHYMGSLSDRRKLTVEYTLINKVNDELEHAQQLA 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LK P KINLIPFNP+P Y + F + + G+ IRT RG DI AACG
Sbjct: 287 KLLKDTPCKINLIPFNPFPNSGYERPSNNRVYKFRDYLHSQGFIVTIRTTRGDDIDAACG 346
Query: 364 QLKSLSK-RIPKVPRQ 378
QL + R + R
Sbjct: 347 QLVGKVEDRTRRSERY 362
>gi|294084982|ref|YP_003551742.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664557|gb|ADE39658.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 372
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 204/379 (53%), Positives = 267/379 (70%), Gaps = 18/379 (4%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ +L+G+ + LEE ++ G+P + R QIW+W++ G+ +F MSD+ + VR L
Sbjct: 9 QRINLLGLSQTALEEQIIAAGLP----KFRAKQIWRWVWRHGLTNFDEMSDLGKPVREQL 64
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ P + S DGT KWLLRFP E E VYIP+K+RGTLC+SSQVGC
Sbjct: 65 ATMYKADRPAVSQRLNSKDGTIKWLLRFP-----DGNEAEAVYIPDKTRGTLCISSQVGC 119
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQKLVRNLT +EI QV+LA L D+P + GR+++NIV+
Sbjct: 120 TLTCSFCHTGTQKLVRNLTVDEICGQVMLAMDELADWPAGRN---------GRRLTNIVL 170
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N++NV +++ I G++ SKRRITLSTSG VP I R GEE+GV LAISLH
Sbjct: 171 MGMGEPLFNYENVAEAMRIIMSGEGVAVSKRRITLSTSGVVPEIKRAGEELGVNLAISLH 230
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++LR+ LVPINRKY L LI+ACR+YPGLSNARRIT+EYVML GINDS D L+
Sbjct: 231 ATRDELRDELVPINRKYKLAALIEACRNYPGLSNARRITWEYVMLDGINDSDEDCRQLLA 290
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KGIP+K+NLIPFNPWPG Y+CS I F++ + ++GY+SP+RTPRG DILAACGQ
Sbjct: 291 LIKGIPSKLNLIPFNPWPGSPYVCSKGDRIDAFAKRVLKAGYASPVRTPRGRDILAACGQ 350
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+RIP+ + + T
Sbjct: 351 LKSASQRIPRHKKAKTTET 369
>gi|300717954|ref|YP_003742757.1| Fe-S containing enzyme [Erwinia billingiae Eb661]
gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661]
Length = 389
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 158/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ R+ L
Sbjct: 21 EKINLLDLNRQQMREFFASMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVFRNRL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ E+ S DGT KW + G ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77 KEVAEIRAPEVATEQRSTDGTIKWAITV------GGQQVETVYIPEKDRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ASKITGTRPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ +R+ +VP+N+KY +E + + Y SNA R+T EYVML +NDS +A L
Sbjct: 241 APNDTIRDEIVPVNKKYNIETFLASVSRYIAKSNANQGRVTIEYVMLDHVNDSTDNAHEL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 301 AALLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R++M
Sbjct: 361 GQLAGEVIDRTKRTLRKKMA 380
>gi|323526580|ref|YP_004228733.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001]
gi|323383582|gb|ADX55673.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001]
Length = 383
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 150/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSSTVNLLDLDAQGLVAYCESLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L ++ P IV + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRATLTMPGIVSDHVSADGTRKWLIDV-----GNSNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNLT EI+ Q+ +A L G G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P + S Q+ I F++ + +G + +R RG DI
Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSKQEQIKRFAQVLMDAGVVTTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL K ++ + +
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375
>gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
Length = 392
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 160/385 (41%), Positives = 217/385 (56%), Gaps = 23/385 (5%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N +K +L+ R+++ ++G R Q+ KW+Y DF M+DI++ +R
Sbjct: 21 NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLR 76
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L I PE+VDE+ S DGT KW + +ETVYIPE+ R TLCVSSQ
Sbjct: 77 GKLQAIAEIRAPEVVDEQRSSDGTIKWAILV------DGQRVETVYIPEEDRATLCVSSQ 130
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITN 180
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A
Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHA 300
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI
Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360
Query: 360 AACGQLKSL-SKRIPKVPRQEMQIT 383
AACGQL R + +++MQ
Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQRD 385
>gi|148261683|ref|YP_001235810.1| radical SAM protein [Acidiphilium cryptum JF-5]
gi|205829703|sp|A5G209|RLMN_ACICJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146403364|gb|ABQ31891.1| 23S rRNA m(2)A-2503 methyltransferase [Acidiphilium cryptum JF-5]
Length = 390
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 183/364 (50%), Positives = 243/364 (66%), Gaps = 14/364 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ REEL A+ +IG R Q+W WIY +G+ DF M++I++ +R L
Sbjct: 37 RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 92
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F+I PE+ + +S D TRK L RF V I V RG +C+SSQVGC+
Sbjct: 93 ERFAIGRPEVAADHLSADETRKMLFRFRDHEAVETVYIPDVTED---RGAVCLSSQVGCT 149
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C FC+TGTQ+L RNL+A EI+ Q + R G++P + R +S IV+M
Sbjct: 150 LSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIVLM 202
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G E+GV LA+SLHA
Sbjct: 203 GMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSLHA 262
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V++D+R+++VP+NRKY + LI ACR YPG SNARRITFEYVMLKGINDS DA L+++
Sbjct: 263 VTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLVEL 322
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAK+NLIPFNPWPG Y S I F+ + +GY++P+RTPRG DILAACGQL
Sbjct: 323 IDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACGQL 382
Query: 366 KSLS 369
KS
Sbjct: 383 KSKV 386
>gi|326405176|ref|YP_004285258.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
multivorum AIU301]
gi|325052038|dbj|BAJ82376.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
multivorum AIU301]
Length = 394
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 183/364 (50%), Positives = 243/364 (66%), Gaps = 14/364 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ REEL A+ +IG R Q+W WIY +G+ DF M++I++ +R L
Sbjct: 41 RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 96
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F+I PE+ + +S D TRK L RF V I V RG +C+SSQVGC+
Sbjct: 97 ERFAIGRPEVAADHLSADETRKMLFRFRDHEAVETVYIPDVTED---RGAVCLSSQVGCT 153
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C FC+TGTQ+L RNL+A EI+ Q + R G++P + R +S IV+M
Sbjct: 154 LSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIVLM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G E+GV LA+SLHA
Sbjct: 207 GMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V++D+R+++VP+NRKY + LI ACR YPG SNARRITFEYVMLKGINDS DA L+++
Sbjct: 267 VTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLVEL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAK+NLIPFNPWPG Y S I F+ + +GY++P+RTPRG DILAACGQL
Sbjct: 327 IDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACGQL 386
Query: 366 KSLS 369
KS
Sbjct: 387 KSKV 390
>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 418
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 161/380 (42%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L
Sbjct: 50 EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+VDE+ S DGT KW + G +ETVYIPE+ R TLCVSSQVGC
Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAILV------GGQRVETVYIPEEDRATLCVSSQVGC 159
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G F R I+N+VM
Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTG----------QRPITNVVM 209
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++D+RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L
Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 330 AECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389
Query: 363 GQLKSL-SKRIPKVPRQEMQ 381
GQL R + ++++
Sbjct: 390 GQLAGEVVDRTKRTLKKKLA 409
>gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
Length = 386
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 169/382 (44%), Positives = 228/382 (59%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+G+ RE++E + +G R Q+ KWI+ +G+ +F M++IS+ +R L
Sbjct: 16 EKTNLLGLSREKMEAFCVSLG----EKPFRAQQLLKWIHHQGVDNFDAMTNISKALRSRL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PEIV + S DGTRKW +R G +ETV IP+ RGTLCVSSQVGC
Sbjct: 72 IQCAEIRPPEIVSQNDSVDGTRKWAIRI-----AGGGLVETVLIPDGDRGTLCVSSQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q R+L+A EI+ QV LA + FP R I+N+VM
Sbjct: 127 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFPSTNK----------RIITNVVM 176
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV +S+S+ D G SKRR+TLSTSG VP + ++G+ V LAISLH
Sbjct: 177 MGMGEPLLNFDNVVQSMSLMMDDFGYGISKRRVTLSTSGVVPALDKLGDVSEVSLAISLH 236
Query: 245 AVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRIT-FEYVMLKGINDSPRDALNL 302
A +++LR+ LVPIN+KYP+ L+ AC R++ ++ R+T EY ++ G+NDS A L
Sbjct: 237 APNDELRSQLVPINKKYPIAELLAACGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKEL 296
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K+LK P KINLIPFNP+ +Y +K I F + + S + +R RG DI AAC
Sbjct: 297 AKLLKDFPCKINLIPFNPFSLSDYQRPSKKTIDQFWQVLSNSSIVTTVRNTRGDDIDAAC 356
Query: 363 GQLKSLS-KRIPKVPRQEMQIT 383
GQL R + R T
Sbjct: 357 GQLVGQVADRTKRSERHRTNYT 378
>gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
Length = 362
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 231/377 (61%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L + ++G R Q+ +W++ G ++F+ M+D+++ +R LN
Sbjct: 2 KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQATIEVPKLMMAQESTDGTRKWLLDV-----GTGNGVETVFIPEAERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 418
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 162/380 (42%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L
Sbjct: 50 EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+VDE+ S DGT KW + G +ETVYIPE+ R TLCVSSQVGC
Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAILV------GGQRVETVYIPEEDRATLCVSSQVGC 159
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G F R I+N+VM
Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTG----------QRPITNVVM 209
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++D+RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L
Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 330 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389
Query: 363 GQLKSL-SKRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 390 GQLAGEVVDRTKRTLKKKMA 409
>gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2]
gi|123741643|sp|Q31I07|RLMN_THICR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2]
Length = 370
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 163/380 (42%), Positives = 218/380 (57%), Gaps = 21/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K L+GM R EL E IG R +Q+ KWI+ G+ DF+ M++IS+ +R L
Sbjct: 7 DKVDLLGMDRAELTEFFASIG----EKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKL 62
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ I P+IV E+ S DGT KWLL +E V+IPEKSRGTLC+SSQVGC
Sbjct: 63 SKTALIRTPKIVSEQRSADGTIKWLLEV-----DNHNCVEAVFIPEKSRGTLCISSQVGC 117
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL EI+ Q+ +A LG P R ISN+V
Sbjct: 118 ALECSFCSTGQQGFNRNLENWEIVAQMWVANKALG-----------CKPKEERIISNVVF 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N + + I D SKRR+T+ST+G VP I ++ E + V LAISLH
Sbjct: 167 MGMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKESLDVSLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
A +N LR+ LVPIN+KYPLE+L+ A Y ++++ +T EYVML +ND A LI
Sbjct: 227 APNNALRDELVPINKKYPLEVLMPALHRYVEGGHSKKHVTVEYVMLDHVNDRLEHAQQLI 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L +P K+NLIPFNP+P +Y S + F + + +G + +R RG DI AACG
Sbjct: 287 ELLGDLPCKVNLIPFNPFPNTDYKRSSNNAVHRFKDALMEAGVNCTVRRTRGDDIDAACG 346
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QL K K Q + +
Sbjct: 347 QLAGKVKDRTKRTLQTVNLD 366
>gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
Length = 388
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R++L E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 21 KINLLDLNRQQLREFFHNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 76
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P++V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 77 EVAEIRAPDVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVMM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMNYGFTTIVRKTRGDDIDAACG 360
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 361 QLAGDVIDRTKRTMRKRMQ 379
>gi|183599740|ref|ZP_02961233.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
gi|188022000|gb|EDU60040.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
Length = 393
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 218/383 (56%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R
Sbjct: 22 NNTQKINLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKALR 77
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQ
Sbjct: 78 AKLKEVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQ 131
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G R I+N
Sbjct: 132 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGR----------RPITN 181
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 182 VVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 241
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDA 299
SLHA ++D+R+ +VPIN+KY +E + + R Y SN R+T EYVML INDS A
Sbjct: 242 SLHAPTDDIRDDIVPINKKYNIETFLSSVRRYLSKSNANGGRVTVEYVMLDHINDSIEQA 301
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 302 HQLAECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 361
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + ++ M
Sbjct: 362 AACGQLAGEVIDRTKRTLKKRMA 384
>gi|24113846|ref|NP_708356.1| hypothetical protein SF2563 [Shigella flexneri 2a str. 301]
gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5 str. 8401]
gi|81723142|sp|Q83K42|RLMN_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123342626|sp|Q0T202|RLMN_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|24052937|gb|AAN44063.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
gi|332754204|gb|EGJ84572.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
gi|332755567|gb|EGJ85931.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
gi|332756478|gb|EGJ86829.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
gi|332766350|gb|EGJ96560.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|333016202|gb|EGK35533.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
Length = 384
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
Length = 364
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 160/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|91784209|ref|YP_559415.1| hypothetical protein Bxe_A1592 [Burkholderia xenovorans LB400]
gi|123358658|sp|Q13X26|RLMN_BURXL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|91688163|gb|ABE31363.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia xenovorans
LB400]
Length = 383
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 152/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRARQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P IV + IS DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 57 REKLKGRATISMPGIVSDHISTDGTRKWLIDV-----GNSNAVETVYIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI
Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVITTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL K ++ + +
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375
>gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae NTUH-K2044]
gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|205829779|sp|A6TCD6|RLMN_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
Length = 388
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ +R L
Sbjct: 21 KINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRSKLK 76
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 77 EVAEIRAPEVVEEQRSTDGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQVGCA 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGV----------RPITNVVMM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +R+ +VPIN+KY +E +++ R Y SNA R+T EYVML +ND A L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379
>gi|254464850|ref|ZP_05078261.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I]
gi|206685758|gb|EDZ46240.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I]
Length = 413
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 190/363 (52%), Positives = 252/363 (69%), Gaps = 13/363 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R+ + E L++ G P++ +MR QIW+WIY G RDF M+++++ R L
Sbjct: 23 KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRAQLA 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V +++S DGTRK+L+R G E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVRI-----AGGHEVEVVYIPEEDRGTLCISSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQVMMARDDLEEWPVP-----GAPKEETRLLSNIVLM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG +LAIS HA
Sbjct: 193 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+ R++LVPIN+++ ++ L+ A YP SN+ RITFEYVML G+ND+ DA LI
Sbjct: 253 TTNETRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDTDEDAHRLIDH 312
Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG
Sbjct: 313 IKRYNIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372
Query: 364 QLK 366
L+
Sbjct: 373 -LR 374
>gi|114562291|ref|YP_749804.1| hypothetical protein Sfri_1113 [Shewanella frigidimarina NCIMB 400]
gi|122300423|sp|Q085U9|RLMN_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|114333584|gb|ABI70966.1| radical SAM enzyme, Cfr family protein [Shewanella frigidimarina
NCIMB 400]
Length = 373
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 167/387 (43%), Positives = 224/387 (57%), Gaps = 25/387 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+KK +L+ + R+ L ++G R Q+ KW+Y G+ DF+ M++I++ +R
Sbjct: 2 SVKKINLLDLDRKGLRALFSEMG----EKPFRADQLMKWVYHFGVTDFEEMNNINKVLRT 57
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I+ PEI + S DGT K+ + G E+ETVYIPE+ R TLCVSSQV
Sbjct: 58 KLAAKCEIVAPEIASFQKSNDGTIKFAINV-----GQGQEVETVYIPEEDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC TG Q RNLT EI+ QV LG + R ISN+
Sbjct: 113 GCALECTFCSTGQQGFNRNLTVSEIIGQVWRVSQFLG----------FHKDTGDRPISNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S
Sbjct: 163 VMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
+HA +++LR++LVP+N+KYPL+ + R Y SN R+T EYVML INDS A
Sbjct: 223 IHAPNDELRDVLVPVNKKYPLQEFLAGIRRYLEKSNANRGRVTVEYVMLDHINDSTDQAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI A
Sbjct: 283 ELAILMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEHGLTVIVRKTRGDDIDA 342
Query: 361 ACGQLKS----LSKRIPKVPRQEMQIT 383
ACGQL +KR+ K Q+ QI+
Sbjct: 343 ACGQLAGDIRDRTKRLAKKQMQQNQIS 369
>gi|332187261|ref|ZP_08389000.1| radical SAM superfamily protein [Sphingomonas sp. S17]
gi|332012682|gb|EGI54748.1| radical SAM superfamily protein [Sphingomonas sp. S17]
Length = 394
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 198/373 (53%), Positives = 260/373 (69%), Gaps = 16/373 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ LIG+ +++L EALL G+ + ++R+ QIW W+Y RG F M+DI++ L
Sbjct: 23 RVDLIGLTKDQLREALLSAGMELKQAKLRSKQIWHWLYNRGAVRFADMTDIAKAQHPWLE 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PE+V+ ++S DGTRKWLLR P + E V+IP+ RGTLCVSSQVGC+
Sbjct: 83 ERFVIGRPEVVEAQVSSDGTRKWLLRSP-----DGQDYEMVFIPDADRGTLCVSSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC+TGT +LVRNLTA EI+ QV+LAR LG++P GR ++NIVMM
Sbjct: 138 LNCRFCHTGTMRLVRNLTAGEIVGQVMLARDSLGEWPSQP---------EGRMLTNIVMM 188
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFD V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 189 GMGEPLYNFDAVRDALKLVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 248
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+ D+R+ +VP+N+KY +E L+ AC YPG +NARRITFEYVMLK NDS DA L+++
Sbjct: 249 VTKDVRDEIVPLNKKYGIEELLQACADYPGANNARRITFEYVMLKDKNDSDADAHELVRL 308
Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
L+ +PAK+NLIPFNPWPG Y CSD + I FS+ + G S+P+RTPRG DI AACG
Sbjct: 309 LRHYKLPAKVNLIPFNPWPGAAYECSDPERIRRFSDIVFEGGISAPVRTPRGRDIDAACG 368
Query: 364 QLKSLSKRIPKVP 376
QLK+ +++ +
Sbjct: 369 QLKTAAEKKSRAQ 381
>gi|254490112|ref|ZP_05103304.1| radical SAM enzyme, Cfr family [Methylophaga thiooxidans DMS010]
gi|224464700|gb|EEF80957.1| radical SAM enzyme, Cfr family [Methylophaga thiooxydans DMS010]
Length = 367
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 163/382 (42%), Positives = 230/382 (60%), Gaps = 21/382 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +L+G+ + LE +++G R Q+ +WI+ + DF M+++S+ +R
Sbjct: 1 MTQSTNLLGLDLKGLEAFFVELG----EKPFRARQLLQWIHKYRVVDFAEMTNLSKALRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I PE++ E IS DGTRKW+++ IETV+IPE RGTLCVSSQV
Sbjct: 57 KLQAVSDIRLPEVLHEHISTDGTRKWIIKLSC-----GNAIETVFIPEGGRGTLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTC+FC T Q RNL A EI+ Q+ +A LG P R ++N+
Sbjct: 112 GCALTCTFCSTAQQGFNRNLDAAEIIAQLWIANEALGKDPKG-----------NRVVTNV 160
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N++NV ++++ D G S RR+TLSTSG VP I ++ E+ V LAIS
Sbjct: 161 VMMGMGEPLANYNNVVTAMNLMRDDYGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAIS 220
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++LR+ +VPIN+KYP++ L+ AC+ Y R IT EYVML GINDS +DA +L
Sbjct: 221 LHAANDELRDQIVPINQKYPIKELLAACKRYVVGQQRRHITVEYVMLDGINDSMQDAKDL 280
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ILK +P KIN+IPFNP+PG +Y CS + I F + G + +R RG DI+AAC
Sbjct: 281 VRILKDLPTKINMIPFNPFPGTDYTCSSRNQIKRFQNYLIEQGMVATVRKTRGDDIVAAC 340
Query: 363 GQLKSLSK-RIPKVPRQEMQIT 383
GQL + + + R Q
Sbjct: 341 GQLAGEVQDKSRRAERMAKQQE 362
>gi|307822494|ref|ZP_07652725.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
gi|307736098|gb|EFO06944.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
Length = 370
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 167/378 (44%), Positives = 236/378 (62%), Gaps = 25/378 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ R+ L +++G R +Q+ KWIY G+ DF M+++S+ +R L +
Sbjct: 13 INLLDFDRKGLAAFFVELG----EKPFRATQLLKWIYQEGVEDFDLMTNLSKSLRAYLTE 68
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ I PEIV EK++ DGT KW+++ G IETV+IPE+ RGTLCVSSQ+GC+L
Sbjct: 69 NCYIATPEIVLEKVATDGTCKWVMQT-----GCGNRIETVFIPEEGRGTLCVSSQIGCAL 123
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC T Q RNLT EI+ Q+ +A+ LG G +I+N+VMMG
Sbjct: 124 ACTFCSTAQQGFNRNLTTAEIIGQLFVAQKRLG---------------PGNRITNVVMMG 168
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV ++++ D SKRR+T+STSG VP + R+ + V LA+SLHAV
Sbjct: 169 MGEPLLNFDNVVAAMNLMMDDFTFGLSKRRVTISTSGVVPAMYRLTQVCDVSLAVSLHAV 228
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++LR+ LVPIN+KYPL+ L++ACR ++ R +TFEYVML GINDS +DA L+K+L
Sbjct: 229 TDELRDELVPINKKYPLKELMEACRDNAKIAPRRTVTFEYVMLDGINDSLQDARGLVKLL 288
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K +P+KINLIPFNP+P Y CS ++ I F + +G + +R RG DI AACGQL
Sbjct: 289 KTVPSKINLIPFNPFPNSAYRCSSKEAINCFKTLLNDAGIVTTVRKTRGEDIDAACGQLV 348
Query: 367 SLSKRIPKVPRQEMQITG 384
K + ++Q G
Sbjct: 349 GQVKDKSR-RHLKIQPAG 365
>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 386
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 173/378 (45%), Positives = 231/378 (61%), Gaps = 21/378 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +K +L+ +L E L+ R Q+++WI+ GIRDF M+++ + +
Sbjct: 5 MDQ-QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVL 59
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R+ L+Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSS
Sbjct: 60 RNKLSQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSS 114
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC T Q RNL+ EI+ QV LA L D G D +KI+
Sbjct: 115 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKIT 164
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NFDNV +++I D + SKRR+TLSTSG +P + R+ E V LA
Sbjct: 165 NVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALA 224
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A
Sbjct: 225 VSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHAS 284
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LIK+L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI A
Sbjct: 285 QLIKLLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDA 344
Query: 361 ACGQLKSLSK-RIPKVPR 377
ACGQL K + + R
Sbjct: 345 ACGQLAGEVKDKTSRSQR 362
>gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
Length = 362
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 231/377 (61%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L + ++G R Q+ +W++ G ++F+ M+D+++ +R LN
Sbjct: 2 KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQATIEVPKLMMAQESTDGTRKWLLDV-----GTGNGVETVFIPEAERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 419
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 159/383 (41%), Positives = 220/383 (57%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N +K +L+ + R+++ E K+G R Q+ KW+Y +F M+DI++ +R
Sbjct: 48 NTSEKINLLDLDRQQMREFFAKLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 103
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ L + I PE+ +E+ S DGT KW ++ +ETVYIPE R TLCVSSQ
Sbjct: 104 NKLKEIAEIRAPEVAEEQRSTDGTIKWAIQVGD------QRVETVYIPEDDRATLCVSSQ 157
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 158 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AHKVTGQRPITN 207
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N +NV +++I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 208 VVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAI 267
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++++R+ +VPINRKY +E + A R Y SNA R+T EYVML IND A
Sbjct: 268 SLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHA 327
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L + LK P KINLIP+NP+PG Y S + FS+ + G++ +R RG DI
Sbjct: 328 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTVIVRKTRGDDID 387
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + +++M
Sbjct: 388 AACGQLAGDVIDRTKRTMKKKMA 410
>gi|254252255|ref|ZP_04945573.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
gi|124894864|gb|EAY68744.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
Length = 379
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNASDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI P+IV + +S DGTRKWL+ G +ETV+IPE +RGTLCVSS
Sbjct: 57 REKLKGRASIAMPDIVSDHVSADGTRKWLIDV-----GNGNAVETVFIPEGTRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGIVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|256823058|ref|YP_003147021.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
gi|256796597|gb|ACV27253.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
Length = 374
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 166/377 (44%), Positives = 227/377 (60%), Gaps = 21/377 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E +++G R Q+ KW++ G+ DF M++IS+ R L
Sbjct: 4 EKTNLLNLTRDEMVEFFVELG----EKPFRAQQVMKWVHQFGVEDFDEMTNISKVCRERL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE++ + S DGT KW L+ P G +E V+IPE+ RGTLCVSSQVGC
Sbjct: 60 KDVAEIKGPEVLSVQESKDGTVKWALKIP-----GGQAVEMVFIPERHRGTLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC TG Q RNLT EI+ QV LA L S R ++N+VM
Sbjct: 115 ALECTFCSTGYQGFNRNLTTAEIIGQVWLAARYL----------HGKHKSDERVVTNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFD V KS+ + D + SKRR+TLSTSG VP + R+ +E+ V LAISLH
Sbjct: 165 MGMGEPLANFDPVVKSMQLMMDDLAYGLSKRRVTLSTSGMVPQLDRLIDEVDVALAISLH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
A ++ LR++LVPIN+KYP++ L+ + Y SNA R T EYVMLK +ND+ + A L
Sbjct: 225 APNDALRDVLVPINKKYPIKELMASVHRYLDRSNAARKATIEYVMLKDVNDTLQHAKELA 284
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIPFNP+P Y S Q+ I FS+ + + GY R RG DI AACG
Sbjct: 285 ELLKNTPCKINLIPFNPFPQANYQTSTQEAIDLFSDYLIKKGYVVVTRRTRGDDIDAACG 344
Query: 364 QLKSL-SKRIPKVPRQE 379
QL + + + R++
Sbjct: 345 QLAGKINDKTKRQERRQ 361
>gi|205829856|sp|Q5ZV93|RLMN_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
Length = 382
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 173/378 (45%), Positives = 231/378 (61%), Gaps = 21/378 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +K +L+ +L E L+ R Q+++WI+ GIRDF M+++ + +
Sbjct: 1 MDQ-QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVL 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R+ L+Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSS
Sbjct: 56 RNKLSQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC T Q RNL+ EI+ QV LA L D G D +KI+
Sbjct: 111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKIT 160
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NFDNV +++I D + SKRR+TLSTSG +P + R+ E V LA
Sbjct: 161 NVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALA 220
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A
Sbjct: 221 VSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHAS 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LIK+L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI A
Sbjct: 281 QLIKLLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDA 340
Query: 361 ACGQLKSLSK-RIPKVPR 377
ACGQL K + + R
Sbjct: 341 ACGQLAGEVKDKTSRSQR 358
>gi|238027069|ref|YP_002911300.1| hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1]
gi|237876263|gb|ACR28596.1| Hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1]
Length = 378
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 151/378 (39%), Positives = 215/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSDTPVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRAVIGMPEIASDHVSSDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L + G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLRMAEFALRESLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML GIND+ A
Sbjct: 229 VSLHAPNDALRDMLVPLNKKYPLRELMAACQRYLAVAPRDFITFEYCMLDGINDTDAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P L S + I FS+ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLLRSKNERIKQFSQILIEAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ ++
Sbjct: 349 ACGQLAGAVKDRTRLQQR 366
>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae WPP163]
gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
Length = 400
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 164/380 (43%), Positives = 219/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E + +G R Q+ KWIY DF M+DI++ R L
Sbjct: 32 EKINLLDLNRQQMRELFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 87
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+VDE+ S DGT KW + G +ETVYIPE+ R TLCVSSQVGC
Sbjct: 88 QEIAEIRAPEVVDEQRSSDGTIKWAILV------GGQRVETVYIPEEDRATLCVSSQVGC 141
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G F R I+N+VM
Sbjct: 142 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTG----------QRPITNVVM 191
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 192 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 251
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L
Sbjct: 252 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 311
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 312 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 371
Query: 363 GQLKSL-SKRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 372 GQLAGEVVDRTKRTLKKKMA 391
>gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
Length = 367
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 155/377 (41%), Positives = 221/377 (58%), Gaps = 14/377 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ +++L + G R Q+ +W++ G+ DF+ M+DI++ +R L
Sbjct: 2 VNLLNYNQKQLAQWFADRG----EKPFRAKQLMRWMHHFGVHDFEQMTDIAKNLREKLAV 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P + ++S DGTRKWL+ IETV+IPE RGTLCVSSQVGC+L
Sbjct: 58 DAEITLPTVQLAQVSNDGTRKWLI-----GTDTANSIETVFIPEDDRGTLCVSSQVGCAL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNL+ EI+ QV +A L PG + ++P+ R ISN+VMMG
Sbjct: 113 ECTFCSTGRQGFNRNLSVAEIIGQVAIANQTLRQEPGYD-----MLPANDRIISNVVMMG 167
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+DNV ++ I D S+RR+TLSTSG VP + R+ E+ V LA+SLHA
Sbjct: 168 MGEPLANYDNVVTAMQIMLDDSAYGLSRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAP 227
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+++VPIN+KYPL+ L+ AC Y + +TFEYVML G+ND+ A L++++
Sbjct: 228 NDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLELV 287
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K + K NLIPFNP+P Y S + F + + ++GY +R RG DI AACGQL
Sbjct: 288 KNVSCKFNLIPFNPFPNSGYDTSKPNHVRVFRDILMQAGYVVTVRKTRGDDIDAACGQLA 347
Query: 367 SLSKRIPKVPRQEMQIT 383
K + + I
Sbjct: 348 GKVLDKTKRTARHIPIE 364
>gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
Length = 364
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L ++G R Q+ +WI+ G + F M+D+++ +R LN
Sbjct: 2 KTNLLNYDLNGLTHHFAEMG----EKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ S+ P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQASVDVPKLMMAQESSDGTRKWLLDV-----GTGNGVETVFIPEAERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae
Ep1/96]
gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96]
gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163]
gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
Ejp617]
Length = 389
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 162/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ L
Sbjct: 21 EKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ G ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77 KELAEIRAPEVAEEQRSADGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ +RN +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A L
Sbjct: 241 APNDSIRNEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 301 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 361 GQLAGDVIDRTKRTLKKKMA 380
>gi|206580011|ref|YP_002237132.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
gi|288934092|ref|YP_003438151.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
gi|254807185|sp|B5XNL2|RLMN_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
Length = 388
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ +R L
Sbjct: 21 KINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLK 76
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 77 EVAEIRAPEVVEEQRSTDGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQVGCA 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGV----------RPITNVVMM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +R+ +VPIN+KY +E +++ R Y SNA R+T EYVML +ND A L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379
>gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli]
gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
Length = 384
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|152979682|ref|YP_001345311.1| hypothetical protein Asuc_2030 [Actinobacillus succinogenes 130Z]
gi|205829707|sp|A6VQX9|RLMN_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|150841405|gb|ABR75376.1| radical SAM enzyme, Cfr family [Actinobacillus succinogenes 130Z]
Length = 371
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 154/382 (40%), Positives = 217/382 (56%), Gaps = 22/382 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R
Sbjct: 1 MSEKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L Q I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 57 KLKQVAEIKAPEVAVEQRSSDGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQV 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+
Sbjct: 111 GCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGI----------RPITNV 160
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N NV ++ I D SKRR+T+STSG VP + ++ E I V LAIS
Sbjct: 161 VMMGMGEPLLNMANVVPAMEIMLDDFAYGLSKRRVTISTSGVVPALDKLPEMIDVALAIS 220
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
LHA +++LR+ +VPIN+KY ++ML+D+ Y +SN ++T EYV+L +ND A
Sbjct: 221 LHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVLLDHVNDGTEHAH 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +LK P KINLIP+NP+P Y S + F + + G++ +R RG DI A
Sbjct: 281 QLADVLKNTPCKINLIPWNPFPEAPYAKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDA 340
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL K Q+ Q
Sbjct: 341 ACGQLAGDVIDRTKRTAQKKQF 362
>gi|298368581|ref|ZP_06979899.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282584|gb|EFI24071.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
F0314]
Length = 364
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 156/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L ++G R Q+ +W++ G ++F M+D+++ +R L
Sbjct: 2 KTNLLNYDLNSLTRHFAEMG----EKPFRAKQVMRWMHQAGAQNFDEMTDLAKSLRQKLI 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EGATIEVPKLMAAQESSDGTRKWLLDV-----GTGNGVETVFIPETDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D+ G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDNHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND+ + A LI +
Sbjct: 222 SNDEVRDKIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDNAQHARELIDL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VRDVPCKFNLIPFNPFPHSGYERSSAENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
K + ++ QI
Sbjct: 342 AGQVKDKTRRQQKWQQI 358
>gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
HI4320]
gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|254807194|sp|B4EZT6|RLMN_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 163/384 (42%), Positives = 221/384 (57%), Gaps = 23/384 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+N K +L+ + R+++ E + +G R QI KWIY DF M+DI++ +
Sbjct: 21 VNQKTKINLLDLNRKQMRELFVSMG----EKPFRADQIMKWIYHYCYDDFDQMTDINKVL 76
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSS
Sbjct: 77 RAKLKEIAEIKAPEVSEEQRSADGTIKWAIKV------GSQQVETVYIPEDDRATLCVSS 130
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C FC T Q RNL EI+ QV A ++G R I+
Sbjct: 131 QVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIIGALKETGR----------RPIT 180
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N +NV +L I D G SKRR+T+STSG VP + ++ + + V LA
Sbjct: 181 NVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVALA 240
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
ISLHA ++D+R+ +VPIN+KY +EM +D R Y SNA R+T EYVML INDS
Sbjct: 241 ISLHAPTDDIRDEIVPINKKYNIEMFLDGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQ 300
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L + LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 301 AHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDI 360
Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + ++ +Q
Sbjct: 361 DAACGQLAGDVIDRTKRTLKKRLQ 384
>gi|170694776|ref|ZP_02885927.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
gi|170140407|gb|EDT08584.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
Length = 383
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 150/384 (39%), Positives = 218/384 (56%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ + + L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSSSTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P IV + IS DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRATISMPGIVSDHISTDGTRKWLIEV-----GNSNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRAVGGEGKGERVV 171
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGM EPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMAEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI
Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDID 351
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL K ++ + +
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375
>gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
Length = 378
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 157/383 (40%), Positives = 224/383 (58%), Gaps = 22/383 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ ++ ++G R Q+ KW+Y + DF M+++++ +R L
Sbjct: 7 KKVNLLNLNRDGMKAFFKEMG----EKPFRADQVMKWLYHFCVDDFDEMTNLNKGLREKL 62
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PEI +++ S DGT K+++ ++ETV+IPE+ R TLCVSSQVGC
Sbjct: 63 KQCAEIRAPEIREQQQSSDGTIKFVMTL-----FDGQDVETVWIPERDRATLCVSSQVGC 117
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC TG Q RNL EI+ QV LLG + + + ++N+VM
Sbjct: 118 ALECTFCSTGQQGFNRNLNVAEIIGQVWRVNQLLGAYG----------KTGIKPVTNVVM 167
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ + D G SKRR+TLSTSG VP + ++ E+I VMLAISLH
Sbjct: 168 MGMGEPLLNLNNVVPAMDLMMDDYGFGLSKRRVTLSTSGVVPALDKLREQIDVMLAISLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA-RRITFEYVMLKGINDSPRDALNLI 303
A +++LRN +VPIN+KY +E + + R Y S A ++T EYVML +NDS A L
Sbjct: 228 APNDELRNEIVPINKKYNIEQFLASSRKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELA 287
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P+KINLIPFNP+PG +Y S I F++ + G++ +R RG DI AACG
Sbjct: 288 RTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMDYGFTVMVRKTRGDDIDAACG 347
Query: 364 QLKSLSKRIPKV--PRQEMQITG 384
QL K RQ+ Q G
Sbjct: 348 QLVGDVIDRTKRILKRQQAQRGG 370
>gi|297530651|ref|YP_003671926.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3]
gi|297253903|gb|ADI27349.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3]
Length = 365
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + +EL+E L+ G R +QI++W+Y + DF M+++ + +R L
Sbjct: 20 PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLAS 75
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FSI + V ++ S DGT K+L IETV + ++CV++QVGC +
Sbjct: 76 SFSITTLKTVVKQTSKDGTIKFLFELH-----DGYSIETVLMRHHYGNSVCVTTQVGCRI 130
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG
Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+LR L+PIN+ YPL L++A R+Y + RR+TFEY + G+ND A L ++
Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKT-GRRVTFEYGLFGGVNDQLEHAEQLAEL 295
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL
Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 356 RAKERKEE 363
>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
Length = 384
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EMAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+ G Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFLGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|205829855|sp|Q2W897|RLMN_MAGMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 456
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 195/371 (52%), Positives = 256/371 (69%), Gaps = 19/371 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L
Sbjct: 85 SKTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGAL 140
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQV 122
+ + + P + E IS D TRKWLL+F E ETVYIP+ + RG +C+S+QV
Sbjct: 141 AERYVVRRPGVTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEERGAVCISTQV 195
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+LTC FC+TGTQ LVRNL+A EI+ Q ++AR G++P +D GR++SNI
Sbjct: 196 GCTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDDG--------GRQLSNI 247
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V+MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+S
Sbjct: 248 VVMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVS 307
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS DA L
Sbjct: 308 LHAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARAL 367
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAAC
Sbjct: 368 LKLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAAC 427
Query: 363 GQLKSLSKRIP 373
GQL+S S+R
Sbjct: 428 GQLRSESQRER 438
>gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58]
gi|81784539|sp|Q9JZ42|RLMN_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
Length = 364
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|205829861|sp|A9BMV6|RLMN_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 374
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 155/389 (39%), Positives = 210/389 (53%), Gaps = 28/389 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ +
Sbjct: 1 MN----TNLLDFDLDGLAAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSL 52
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I ++ E +S DGT KWL GG +E V+IPE RGTLCVSS
Sbjct: 53 REKLKACAHITALPVLTEHVSADGTVKWLFDV-----GGGDAVEAVFIPEDDRGTLCVSS 107
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EIL Q+ A L G R IS
Sbjct: 108 QAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGTGG---------ERVIS 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V +A
Sbjct: 159 NVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMA 218
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +++LR+ LVP+NRKYP+ L+DAC Y + ITFEY ML G+ND P A
Sbjct: 219 VSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHAR 278
Query: 301 NLIKILKGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
LI++++ K NLIPFNP+P L S + F+ + +G + +R RG
Sbjct: 279 QLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRG 338
Query: 356 LDILAACGQLKSLSK-RIPKVPRQEMQIT 383
DI AACGQL K R R Q T
Sbjct: 339 DDIDAACGQLAGDVKDRTRAAERMARQRT 367
>gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1]
gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1]
Length = 397
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 155/389 (39%), Positives = 210/389 (53%), Gaps = 28/389 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ +
Sbjct: 24 MN----TNLLDFDLDGLAAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSL 75
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I ++ E +S DGT KWL GG +E V+IPE RGTLCVSS
Sbjct: 76 REKLKACAHITALPVLTEHVSADGTVKWLFDV-----GGGDAVEAVFIPEDDRGTLCVSS 130
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EIL Q+ A L G R IS
Sbjct: 131 QAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGTGG---------ERVIS 181
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V +A
Sbjct: 182 NVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMA 241
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +++LR+ LVP+NRKYP+ L+DAC Y + ITFEY ML G+ND P A
Sbjct: 242 VSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHAR 301
Query: 301 NLIKILKGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
LI++++ K NLIPFNP+P L S + F+ + +G + +R RG
Sbjct: 302 QLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRG 361
Query: 356 LDILAACGQLKSLSK-RIPKVPRQEMQIT 383
DI AACGQL K R R Q T
Sbjct: 362 DDIDAACGQLAGDVKDRTRAAERMARQRT 390
>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
gi|205829755|sp|A4WD95|RLMN_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
Length = 388
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 220/383 (57%), Gaps = 23/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L+ + R+++ E L++G R Q+ KW+Y +F M+DI++ +R
Sbjct: 17 NKNGKINLLDLNRQQMREFFLEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLR 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ L I PE+V+E+ S DGT KW + +ETVYIPE+ R TLCVSSQ
Sbjct: 73 NKLKDVAEIRAPEVVEEQRSADGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQ 126
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A ++G + R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
SLHA ++++R+ +VP+N+KY +E + A R Y SNA R+T EYVML +ND A
Sbjct: 237 SLHAPNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI
Sbjct: 297 HQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDID 356
Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379
>gi|167644157|ref|YP_001681820.1| radical SAM protein [Caulobacter sp. K31]
gi|205829696|sp|B0T387|RLMN_CAUSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|167346587|gb|ABZ69322.1| radical SAM enzyme, Cfr family [Caulobacter sp. K31]
Length = 404
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 197/379 (51%), Positives = 268/379 (70%), Gaps = 16/379 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L G+ R +L AL + G+ + +MR +QI++W++ RG+ DF M+D+++E R L
Sbjct: 26 INLSGLTRAQLLVALTESGVAEHGKAKMRATQIFRWMHHRGVTDFALMTDVAKETRARLA 85
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
+ F++ PE+V+ ++S DGTRKWL+R +E+ETVYIP R G LCVSSQVGC
Sbjct: 86 ERFTVSRPEVVERQVSKDGTRKWLIRM-----APGIEVETVYIPSVGRAGALCVSSQVGC 140
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC+TGTQ LVRNLTA EI+ QV +A+ L ++P R +SNIV
Sbjct: 141 TLNCSFCHTGTQALVRNLTAAEIVAQVQIAKDDLAEWPS---------DKEDRLLSNIVF 191
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +V ++ I SD+ G+ S+RRIT+STSG VP + +G++ MLAISLH
Sbjct: 192 MGMGEPLYNLGHVADAIEIISDNEGIGISRRRITVSTSGVVPQLEALGDKTQAMLAISLH 251
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR++LVP+N+KYPLE L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K
Sbjct: 252 ATNDALRDVLVPLNKKYPLEDLMAGVRAYPGLSNARRVTFEYVMLKGVNDSPDEARALVK 311
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KGIPAKINLIPFNPWPG +Y+CSD I F + ++GYSSPIRTPRG DILAACGQ
Sbjct: 312 LIKGIPAKINLIPFNPWPGTDYVCSDWAAIEAFGAILNKAGYSSPIRTPRGRDILAACGQ 371
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+++ +++ +
Sbjct: 372 LKSESEKVRASAMRKLSMA 390
>gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
Length = 364
Score = 382 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLT+ EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
str. Corby]
gi|296107129|ref|YP_003618829.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
Alcoy]
gi|205829782|sp|A5IC42|RLMN_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
Alcoy]
Length = 382
Score = 382 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 174/378 (46%), Positives = 231/378 (61%), Gaps = 21/378 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +K +L+ +L E L+ R Q+++WI+ GIRDF M+++ + +
Sbjct: 1 MDQ-QKVNLLNYNYSQLRELLMAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVL 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R+ L+Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSS
Sbjct: 56 RNKLSQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC T Q RNL+ EI+ QV LA L D G D +KI+
Sbjct: 111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHD----------KKIT 160
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NFDNV ++SI D + SKRR+TLSTSG +P + R+ E V LA
Sbjct: 161 NVVMMGMGEPLLNFDNVVSAMSIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALA 220
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A
Sbjct: 221 VSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHAS 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LIK+L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI A
Sbjct: 281 QLIKLLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLIKHGINTITRKTRGDDIDA 340
Query: 361 ACGQLKSLSK-RIPKVPR 377
ACGQL K + + R
Sbjct: 341 ACGQLAGEVKDKTTRSQR 358
>gi|254418192|ref|ZP_05031916.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3]
gi|196184369|gb|EDX79345.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3]
Length = 390
Score = 382 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 199/375 (53%), Positives = 269/375 (71%), Gaps = 16/375 (4%)
Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L G+ R L +AL+ + P +MR SQ+W WI+ G+ +F MS+++++++ L
Sbjct: 20 VNLSGLTRAGLRQALIDANVCPPEKAKMRASQVWSWIHHYGVTEFSAMSNVAKDMQAKLA 79
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
+HF++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC
Sbjct: 80 EHFTLARPEIVERQVSKDGTRKWLIRT-----APGIEIETVYIPDVGRAGALCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQKLVRNLTA EI+ QV +AR L ++P P R++SNIV
Sbjct: 135 TLNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLEEWPS---------PKEDRRLSNIVF 185
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG P + +G MLAISLH
Sbjct: 186 MGMGEPLYNLDHVADAIDIISDNEGIALSRRRITVSTSGVAPQLDALGTRTAAMLAISLH 245
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR++LVP+N+KYPL+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K
Sbjct: 246 ATNDALRDVLVPLNKKYPLDQLMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALLK 305
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+++GIPAKINLIPFNPWPG EY CSD K I F+ + ++GY+SPIRTPRG DILAACGQ
Sbjct: 306 LIEGIPAKINLIPFNPWPGVEYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQ 365
Query: 365 LKSLSKRIPKVPRQE 379
LKS S+++ ++
Sbjct: 366 LKSESEKVRASALRK 380
>gi|241662752|ref|YP_002981112.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
gi|240864779|gb|ACS62440.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
Length = 383
Score = 382 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 148/372 (39%), Positives = 214/372 (57%), Gaps = 16/372 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ L +G R Q+ +WI+ G DF M+D+++ +R L
Sbjct: 5 VNLLDFDAHGLLAYCESLG----EKSFRAKQLQRWIHQSGASDFGEMTDLAKSLREKLAT 60
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSSQ GC++
Sbjct: 61 RANIQAPAVITDHLSSDGTRKWLVDV-----GQGNAVETVYIPEETRGTLCVSSQAGCAV 115
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A + G P R I+N+VMMG
Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGRG-------PKDDRVITNVVMMG 168
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+D V +L++ D S+RR+T+STSG VP + R+ ++ V LA+SLHA
Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND+ A L++++
Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI AACGQL
Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 349 GEVKDRTRLAER 360
>gi|56419709|ref|YP_147027.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
kaustophilus HTA426]
gi|81347651|sp|Q5L0S1|RLMN_GEOKA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|56379551|dbj|BAD75459.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 365
Score = 382 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + +EL+E L+ G R +QI++W+Y + DF M+++ + +R L
Sbjct: 20 PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLAS 75
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FSI + V ++ S DGT K+L IETV + ++CV++QVGC +
Sbjct: 76 SFSITTLKTVVKQTSKDGTIKFLFELH-----DGYSIETVLMRHNYGNSVCVTTQVGCRI 130
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG
Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+LR L+PIN+ YPL L++A R+Y + RR+TFEY + G+ND A L ++
Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKT-GRRVTFEYGLFGGVNDQLEHAEQLAEL 295
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL
Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 356 RAKERKEE 363
>gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
Length = 364
Score = 382 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 157/377 (41%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ L ++G R Q+ +WI+ G + F M+D+++ +R LN
Sbjct: 2 KTNLLNYDLNGLTHHFAEMG----EKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ S+ P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQASVDVPKLMMAQESTDGTRKWLLDV-----GTGNGVETVFIPEAERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NF+NV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND + A LI++
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|257453867|ref|ZP_05619145.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
gi|257448794|gb|EEV23759.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
Length = 399
Score = 382 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 149/383 (38%), Positives = 220/383 (57%), Gaps = 15/383 (3%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ K +L+GM + EL + +G R +Q+ KWIY G+ DF M+++S++++
Sbjct: 17 DLTAKTNLLGMSKAELGQFFADLG----EKPFRATQVMKWIYQFGVTDFYQMTNLSKKLQ 72
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L++ ++ P + ++ S DGTRKW+ + V I + R TLC+SSQ
Sbjct: 73 ETLDEVATVSPPTVKFKQFSEDGTRKWVFEVAGGSLVETVLIPADDNKQFGRKTLCISSQ 132
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L CSFC TG Q R+L+ EI+ Q+ +A + + + +++N
Sbjct: 133 VGCALDCSFCSTGKQGFERDLSPSEIIGQLWVANQSYME--------NVPVTERENRVTN 184
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N++ V S+S+ D G SKRR+TLSTSG VP + + ++I V LAI
Sbjct: 185 VVMMGMGEPLLNYEPVVASMSLMLDDFGFGLSKRRVTLSTSGIVPKMYELAKDIDVALAI 244
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPRD 298
SLHA +++LRN LVPIN+KYPL+ LI A + Y + + +T EYVMLK +ND+
Sbjct: 245 SLHAPNDELRNELVPINKKYPLKELIAAAKSYVYDENPRHKKHVTIEYVMLKDVNDTDEH 304
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+ +LK +P KINLIPFNP+P Y S I FS + ++G+ IR RG DI
Sbjct: 305 ARQLVNLLKDLPCKINLIPFNPFPHAPYGRSSNNRIHAFSNILNQAGFVCTIRQTRGDDI 364
Query: 359 LAACGQLKSLSKRIPKVPRQEMQ 381
AACGQL + +Q +
Sbjct: 365 DAACGQLVGQVTDKTRRAKQWQE 387
>gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
Length = 372
Score = 381 bits (979), Expect = e-104, Method: Composition-based stats.
Identities = 164/383 (42%), Positives = 222/383 (57%), Gaps = 22/383 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K +L+ + RE L ++G R Q+ KWIY G+ DF+ MS++++ +R +
Sbjct: 1 MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGVSDFEEMSNLNKNLRAM 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++ I PEI + + DGT K+ L G E+E+V+IPE R TLCVSSQVG
Sbjct: 57 LIENCEIKAPEIAYFQEASDGTIKFALTLE-----GGQEVESVWIPETDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L C+FC T Q RNL+ EI+ QV + LG + S R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301
HA +++LRN +VP+N+KY +E + R Y S N R+T EYVML INDS A
Sbjct: 222 HAPTDELRNEIVPVNKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L K+LK P+KINLIPFNP+PG Y CS I FS+ + G+++ +R RG DI AA
Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMEYGFTTVVRKTRGDDIDAA 341
Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
CGQL K + Q+ G
Sbjct: 342 CGQLVGDVVDRTK-RLLKKQVKG 363
>gi|239997032|ref|ZP_04717556.1| hypothetical protein AmacA2_21513 [Alteromonas macleodii ATCC
27126]
Length = 372
Score = 381 bits (979), Expect = e-104, Method: Composition-based stats.
Identities = 165/383 (43%), Positives = 222/383 (57%), Gaps = 22/383 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K +L+ + RE L ++G R Q+ KWIY GI DF+ MS++++ +R +
Sbjct: 1 MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGISDFEEMSNLNKNLRAM 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++ I PEI + + DGT K+ L G E+E+V+IPE R TLCVSSQVG
Sbjct: 57 LIENCEIKAPEIAYFQEASDGTIKFALTLE-----GGQEVESVWIPETDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L C+FC T Q RNL+ EI+ QV + LG + S R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301
HA +++LRN +VPIN+KY +E + R Y S N R+T EYVML INDS A
Sbjct: 222 HAPTDELRNEIVPINKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L K+LK P+KINLIPFNP+PG Y CS I F++ + G+++ +R RG DI AA
Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGFTTVVRKTRGDDIDAA 341
Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
CGQL K + Q+ G
Sbjct: 342 CGQLVGDVVDRTK-RMLKKQVKG 363
>gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii
Ech703]
gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703]
Length = 393
Score = 381 bits (979), Expect = e-104, Method: Composition-based stats.
Identities = 158/381 (41%), Positives = 211/381 (55%), Gaps = 22/381 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ +G R Q+ KWIY DF M+DI++ +R L
Sbjct: 25 KINLLDLNRQQMRAFFAALG----EKPFRADQVMKWIYHYCCDDFNQMTDINKALRTRLQ 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I P++VDE+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 81 AIAEIRAPDVVDEQRSSDGTIKWAILV------DGQRVETVYIPEDDRATLCVSSQVGCA 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L
Sbjct: 245 PTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QL K ++ G
Sbjct: 365 QLAGEVVDRTKRTLKKKMAEG 385
>gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18]
gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14]
gi|205829823|sp|A1KUD6|RLMN_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
Length = 364
Score = 381 bits (979), Expect = e-104, Method: Composition-based stats.
Identities = 160/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|46201028|ref|ZP_00207935.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
magnetotacticum MS-1]
Length = 375
Score = 381 bits (979), Expect = e-104, Method: Composition-based stats.
Identities = 195/368 (52%), Positives = 257/368 (69%), Gaps = 19/368 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L
Sbjct: 5 KINLIGLSRDQLIAEMAAIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
+ + + P++ E IS D TRKWLL+F E ETVYIP+ + RG +C+S+QVG
Sbjct: 61 ERYVVRRPQMTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEDRGAVCISTQVG 115
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+LTC FC+TGTQ LVRNLTA EI+ Q ++AR G++P +D GR++SNIV
Sbjct: 116 CTLTCRFCHTGTQLLVRNLTAAEIVGQFMVARDSYGEWPTPDDG--------GRQLSNIV 167
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
+MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+SL
Sbjct: 168 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKICGERLGVNLAVSL 227
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKG+NDS DA L+
Sbjct: 228 HAVTDEIRDRIMPINKKYPLKELMQACRDYPGASNARRITFEYIMLKGVNDSAADARALL 287
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAACG
Sbjct: 288 KLIKGLPAKFNLIPFNPWPGSEFETPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 347
Query: 364 QLKSLSKR 371
QL+S S+R
Sbjct: 348 QLRSESQR 355
>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
gi|81370554|sp|Q5X516|RLMN_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
Length = 382
Score = 381 bits (979), Expect = e-104, Method: Composition-based stats.
Identities = 172/378 (45%), Positives = 230/378 (60%), Gaps = 21/378 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +K +L+ +L E L+ R Q+++WI+ GI DF M+++ + +
Sbjct: 1 MDQ-QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGICDFAQMTNLGKVL 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R+ L+Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSS
Sbjct: 56 RNKLSQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC T Q RNL+ EI+ QV LA L D G D +KI+
Sbjct: 111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKIT 160
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NFDNV +++I D + SKRR+TLSTSG +P + R+ E V LA
Sbjct: 161 NVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALA 220
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A
Sbjct: 221 VSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHAS 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LIK+L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI A
Sbjct: 281 QLIKLLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDA 340
Query: 361 ACGQLKSLSK-RIPKVPR 377
ACGQL K + + R
Sbjct: 341 ACGQLAGEVKDKTSRSQR 358
>gi|212639614|ref|YP_002316134.1| ribosomal RNA large subunit methyltransferase N [Anoxybacillus
flavithermus WK1]
gi|212561094|gb|ACJ34149.1| Predicted Fe-S-cluster redox enzyme [Anoxybacillus flavithermus
WK1]
Length = 349
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 127/369 (34%), Positives = 203/369 (55%), Gaps = 25/369 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ M E+L+ + + G R +QI++W+Y + F+ M++I + +R L
Sbjct: 2 KPSIYSMRLEDLQSWVEQQG----EKPFRATQIFEWLYKKRATSFEDMTNIPKALRERLA 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I + + ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 58 EHFVITTLKTLVQQTSKDGTMKFLFELH-----DGYSIETVLMRHDYGNSICVTTQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNL A EI+ QV+ + L + ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLQAGEIVAQVVKVQKALDE--------------TNERVSSIVVM 158
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+D + K L I + GL R IT+STSG +P I + +E + + AISLH
Sbjct: 159 GIGEPFDNYDELIKFLKIVNHPKGLHIGARHITVSTSGIIPKIYQFADENMQINFAISLH 218
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +LR+ L+PINR Y L L++A R+Y + RR+TFEY + G+ND A L +
Sbjct: 219 APNTELRSKLMPINRAYKLPELMEAVRYYIEKT-GRRVTFEYGLFGGVNDQIEHAEELAE 277
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KG+ +NLIP N P Y+ + ++ I F + +K+ G + IR +G DI AACGQ
Sbjct: 278 LIKGLKCHVNLIPVNYVPERNYVRTPREQIFAFEKTLKKHGINVTIRREQGHDIDAACGQ 337
Query: 365 LKSLSKRIP 373
L++ ++
Sbjct: 338 LRAKERKEE 346
>gi|330817169|ref|YP_004360874.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
gi|327369562|gb|AEA60918.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
Length = 378
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 150/378 (39%), Positives = 213/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRAMIGMPEIASDHVSSDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L + G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLRMAEFALRESLGRAPGPNG---KADRVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLTVAPRDFITFEYCMLDGVNDTDAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P L S + I FS+ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLLRSKNERIKQFSQILIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|325526956|gb|EGD04412.1| radical SAM superfamily protein [Burkholderia sp. TJI49]
Length = 379
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 213/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRATISMPEIASDHVSADGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|103486196|ref|YP_615757.1| hypothetical protein Sala_0703 [Sphingopyxis alaskensis RB2256]
gi|122985201|sp|Q1GV98|RLMN_SPHAL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|98976273|gb|ABF52424.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
Length = 420
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 200/399 (50%), Positives = 258/399 (64%), Gaps = 25/399 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ L+G+ R+ + L++ G+ + ++R QIW WIY RG+ DF GM+DI++ +R L
Sbjct: 21 NRIDLVGLSRDAIGGVLVEAGLDAKAAKLRAKQIWHWIYHRGVTDFMGMTDIAKAMRPWL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
F I P + + ++S DGTRKWLL E E V+IP+ RGTLCVSSQVGC
Sbjct: 81 TDRFIIGRPTVREAQVSSDGTRKWLL-----AAADGQEYEMVFIPDADRGTLCVSSQVGC 135
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE------------------D 166
+L C FC+TGT +LVRNL A EI+ QVLLAR LG++P D
Sbjct: 136 TLNCRFCHTGTMRLVRNLGAGEIVGQVLLARDALGEWPKGNMAGFGAGSDADPEDDDADD 195
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
+ GR ++NIVMMGMGEPL NFD VK +L I D GL+ SKRRITLSTSG VP
Sbjct: 196 DAVGHYTADGRMLTNIVMMGMGEPLYNFDEVKAALKIVMDGDGLALSKRRITLSTSGVVP 255
Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
+AR GEEIGV LA+SLHAVS ++R+ +VP+NRKY +E L+ AC YPG +NARRITFEY
Sbjct: 256 MMARAGEEIGVNLAVSLHAVSKEIRDEIVPLNRKYGIEELLQACADYPGANNARRITFEY 315
Query: 287 VMLKGINDSPRDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
VMLK ND DA L++++K +PAK+NLIPFNPWPG Y CS + + FS I ++
Sbjct: 316 VMLKDKNDRDEDARELVRLIKQYKLPAKVNLIPFNPWPGAPYECSTPERVRAFSNLIFKA 375
Query: 345 GYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
G S+PIRTPRG DI+AACGQLKS + R + +
Sbjct: 376 GISAPIRTPRGRDIMAACGQLKSAATRPTRAELDRIAEE 414
>gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
Length = 372
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 162/381 (42%), Positives = 218/381 (57%), Gaps = 23/381 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + R+E+ L +G R QI KWIY G +F M++I++ +R
Sbjct: 2 TTEKTNLLNLTRQEMRHFLADLG----EKPFRADQIMKWIYHYGEDNFDNMTNINKVLRE 57
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L Q I PEI E+ S DGT KW ++ +IE+VYIPE R TLCVSSQV
Sbjct: 58 KLKQVAEIKAPEIAVEQRSFDGTIKWAMQVGD------QQIESVYIPEADRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC T Q RNLT EI+ QV A ++G F + R I+N+
Sbjct: 112 GCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFGETKV----------RPITNV 161
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++GE I V LAIS
Sbjct: 162 VMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKLGEMIDVALAIS 221
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
LHA +++LRN +VP+N+KY +EML+D+ Y +SN ++T EYVML +ND A
Sbjct: 222 LHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAH 281
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K+LK P KINLIP+NP+P Y S I F + + G++ +R RG DI A
Sbjct: 282 QLAKVLKNTPCKINLIPWNPFPEAPYNKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDA 341
Query: 361 ACGQLKSLS-KRIPKVPRQEM 380
ACGQL R + ++
Sbjct: 342 ACGQLAGDVIDRTKRTAQKRA 362
>gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
Length = 399
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 155/381 (40%), Positives = 224/381 (58%), Gaps = 19/381 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+GM + LE +G + R +Q+ KW++ G+ DF M++IS+ +R L
Sbjct: 19 KVNLLGMSQGRLEAFFESLG----EKKFRATQVLKWVHQLGVTDFAQMTNISKALRERLA 74
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE++++ S DGTRK+L+R GG IETV+IP+ RGTLCVSSQVGCS
Sbjct: 75 DIAEVRIPEVIEQWDSTDGTRKFLIRV-----GGGNAIETVFIPDGERGTLCVSSQVGCS 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LT++EI+ QV +A G RK++N+V+M
Sbjct: 130 LDCSFCATGKQGFNRDLTSDEIIGQVWIAAKSFGQL-------QEGGARGDRKVTNVVLM 182
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV +++ + SKRR+TLSTSG VP + R+G+ LAISLHA
Sbjct: 183 GMGEPLLNFENVVEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRLGKYTDACLAISLHA 242
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LRN LVPIN+KYP+ L+ + + Y R+IT EY ++ +ND A L+
Sbjct: 243 PNDELRNQLVPINKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRIEHAHELV 302
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK +P KINLIPFNP+ Y + F + + +GY++ +RT RG DI AACG
Sbjct: 303 ELLKDVPVKINLIPFNPFGLSNYKKVSNNALRRFQQILIDAGYTATVRTTRGDDIDAACG 362
Query: 364 QLKSL-SKRIPKVPRQEMQIT 383
QL + R + R ++
Sbjct: 363 QLAGQVNDRTKRSQRYKLDQA 383
>gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442]
gi|205829821|sp|A9LZN6|RLMN_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 364
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 161/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADTG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ SI P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQASIEIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDRAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
Length = 411
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 161/382 (42%), Positives = 211/382 (55%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E +G R QI KWIY DF M+DI++ +R L
Sbjct: 43 EKINLLDLNRKQMREFFAAMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRAKL 98
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW L+ +ETVYIPE R TLCVSSQVGC
Sbjct: 99 KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 152
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 202
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 203 MGMGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ +R+ +VPINRKY +E + + R Y SNA R+T EYVML +ND A L
Sbjct: 263 APNDAIRDQIVPINRKYNIETFLASVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQL 322
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC
Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL K + Q G
Sbjct: 383 GQLAGEVIDRTK-RTLKKQAAG 403
>gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
Length = 398
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 158/382 (41%), Positives = 233/382 (60%), Gaps = 21/382 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ ++ K +L+ L + ++G R Q+ +W++ G ++F+ M+D+++ +
Sbjct: 34 IKYM-KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSL 88
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LN+ +I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SS
Sbjct: 89 RAKLNEQATIEVPKLMMAQESTDGTRKWLLDV-----GTGNGVETVFIPEAERGTLCISS 143
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C+FC TG Q RNLTA EI+ Q+ A +G V P R IS
Sbjct: 144 QVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVIS 192
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA
Sbjct: 193 NVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALA 252
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A
Sbjct: 253 VSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHAR 312
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI+++K +P K NLIPFNP+P Y S ++I F + +++ G+ +R RG DI A
Sbjct: 313 ELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQVGFVVTVRKTRGDDIDA 372
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL + + ++ QI
Sbjct: 373 ACGQLAGQVQDKTRRQQKWQQI 394
>gi|261419372|ref|YP_003253054.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
Y412MC61]
gi|319766187|ref|YP_004131688.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
gi|261375829|gb|ACX78572.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC61]
gi|317111053|gb|ADU93545.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
Length = 365
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + +EL+E L+ G R +QI++W+Y + DF M+++ + +R L
Sbjct: 20 PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYKNRVTDFADMTNLPKRLREQLAS 75
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FSI + V ++ S DGT K+L IETV + ++CV++QVGC +
Sbjct: 76 SFSITTLKTVVKQTSKDGTIKFLFELH-----DGYSIETVLMRHNYGNSVCVTTQVGCRI 130
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG
Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+LR L+PIN+ YPL L++A R+Y + RR+TFEY + G+ND A L ++
Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKT-GRRVTFEYGLFGGVNDQLEHAEQLAEL 295
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL
Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 356 RAKERKEE 363
>gi|332639899|pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
gi|332639900|pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
Length = 404
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AA G
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAXG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
Length = 369
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 153/380 (40%), Positives = 207/380 (54%), Gaps = 25/380 (6%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ E L ++G R R +Q+++WI+ RG DF M+D+++ +R L
Sbjct: 2 LDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH 57
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
I +V E +S DGT KWL G +E+V+IPE RGTLCVSSQ GC++ C
Sbjct: 58 ITALPVVTEHVSADGTVKWLFDV-----GDGNAVESVFIPEDDRGTLCVSSQAGCAVGCR 112
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG Q RNL EIL Q+ A L G ED R ISN+VMMGMGE
Sbjct: 113 FCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMGMGE 162
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
PL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA ++
Sbjct: 163 PLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDP 222
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR+ LVP+N+KYP+ L+DAC Y + ITFEY ML G+ND P A LI++++
Sbjct: 223 LRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRAR 282
Query: 310 -----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K NLIPFNP+P L S + F+ + +G + +R RG DI AACGQ
Sbjct: 283 GDGKSWCKFNLIPFNPFPASGLLRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQ 342
Query: 365 LKSLSK-RIPKVPRQEMQIT 383
L K R R Q T
Sbjct: 343 LAGDVKDRTRAAERMAKQRT 362
>gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis PB1/+]
gi|205829930|sp|B2K9Q3|RLMN_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+]
Length = 398
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 160/380 (42%), Positives = 219/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 30 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 86 QRVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVM 189
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +EM + A R Y S N R+T EYVML INDS A L
Sbjct: 250 APTDDIRDEIVPINRKYNIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKMA 389
>gi|78066584|ref|YP_369353.1| hypothetical protein Bcep18194_A5115 [Burkholderia sp. 383]
gi|123770007|sp|Q39FQ7|RLMN_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|77967329|gb|ABB08709.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia sp. 383]
Length = 379
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 149/378 (39%), Positives = 213/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETTVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASIGMPEIASDHVSTDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDPLRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
Length = 398
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 30 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 86 QRVAEIRAPEVAEEQRSIDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVM 189
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKMA 389
>gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
Length = 398
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ + ++G R Q+ KWIY DF+ M+DI++ +R L
Sbjct: 31 KINLLDLNRQQMRQFFAEMG----EKPFRADQVMKWIYHYCFDDFEQMTDINKVLRAKLQ 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+
Sbjct: 87 RVAEIRAPEVTEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G V + R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L
Sbjct: 251 PTDDIRDEIVPINRKYNIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKMA 389
>gi|188533171|ref|YP_001906968.1| hypothetical protein ETA_10250 [Erwinia tasmaniensis Et1/99]
gi|254807181|sp|B2VE98|RLMN_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99]
Length = 389
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 161/380 (42%), Positives = 219/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ L
Sbjct: 21 EKINLLDLNRQQMREFFAGLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ G ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77 KELAEIRAPEVAEEQRSSDGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ATKVIGQRPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ +R+ +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A L
Sbjct: 241 APNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 361 GQLAGDVIDRTKRTLKKKMA 380
>gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
KIM 10]
gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
biovar Microtus str. 91001]
gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 32953]
gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Antiqua]
gi|108811419|ref|YP_647186.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
gi|145599499|ref|YP_001163575.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162419386|ref|YP_001605027.1| hypothetical protein YpAngola_A0421 [Yersinia pestis Angola]
gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
CO92]
gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516]
gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|81638860|sp|Q667Z6|RLMN_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123372276|sp|Q1C5I5|RLMN_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123373337|sp|Q1CK94|RLMN_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123776892|sp|Q7CJM9|RLMN_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829931|sp|A9R805|RLMN_YERPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829932|sp|A4TMU0|RLMN_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM 10]
gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar
Microtus str. 91001]
gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua]
gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola]
gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516]
gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 398
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 30 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 86 QRVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVM 189
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKMA 389
>gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 31758]
gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis YPIII]
gi|205829929|sp|A7FFY6|RLMN_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829933|sp|B1JS02|RLMN_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis
IP 31758]
gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII]
Length = 398
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 30 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 86 QRVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVM 189
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKMA 389
>gi|167627914|ref|YP_001678414.1| radical SAM superfamily protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|205829762|sp|B0U083|RLMN_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|167597915|gb|ABZ87913.1| radical SAM superfamily protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 370
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 157/382 (41%), Positives = 233/382 (60%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +R+ L
Sbjct: 4 DKINLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ I+ P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60 KENAEIVIPKVVFNKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL++ E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA LI+
Sbjct: 224 APTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLIE 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L+ +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLRSREVPAKINLIPFNPYPGTPYRKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL K + ++ G
Sbjct: 344 GQLAGDVMDKTKRKERYLKKLG 365
>gi|148555870|ref|YP_001263452.1| radical SAM protein [Sphingomonas wittichii RW1]
gi|205829890|sp|A5VAJ8|RLMN_SPHWW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|148501060|gb|ABQ69314.1| radical SAM enzyme, Cfr family [Sphingomonas wittichii RW1]
Length = 402
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 197/380 (51%), Positives = 263/380 (69%), Gaps = 16/380 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ R++L AL + R ++R Q+W WIY RG DF M+DI++++R L+
Sbjct: 31 RIDLLGLSRDDLRMALETAQLEPRQAKLRAKQLWHWIYNRGATDFAVMTDIAKDMRGWLD 90
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+
Sbjct: 91 QRFVVSRPEVVEAQVSTDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC+TGT KLVRNLT EI+ QV+LAR LG++P GR ++NIVMM
Sbjct: 146 LNCRFCHTGTMKLVRNLTPAEIVGQVMLARDALGEWPSQP---------EGRMLTNIVMM 196
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV+ +L + D GL+ SKRRITLST+G VP +AR GEEIGV LA+SLHA
Sbjct: 197 GMGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTAGVVPMMARAGEEIGVNLAVSLHA 256
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ ++R+ +VP+NRKY +E L+ AC YPG +NARRITFEYVMLK ND DAL L+++
Sbjct: 257 ITKEVRDEIVPLNRKYGIEDLLQACADYPGANNARRITFEYVMLKDKNDRDEDALELVRL 316
Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++ +PAK+NLIPFNPWPG Y CSD + FS+ I ++G S+P+RTPRG DI+AACG
Sbjct: 317 IRKYRLPAKVNLIPFNPWPGAPYECSDPDRVARFSDLIFKAGISAPVRTPRGRDIMAACG 376
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QLKS +++ + M
Sbjct: 377 QLKSAAEKKSRAELDRMAAE 396
>gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1]
gi|300075044|gb|ADJ64443.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1]
Length = 390
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 150/381 (39%), Positives = 215/381 (56%), Gaps = 18/381 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ M +L ++G R Q+ +WI+ G+ DF M+D+++ +R L
Sbjct: 6 TNLLDMDPAQLVAYCGELG----EKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKT 61
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ P I+ + S DGTRKWL+ G +ETV+IPE++RGTLCVS+Q GC++
Sbjct: 62 RAEVRAPAIISDHTSTDGTRKWLVDV-----GQGNAVETVFIPEENRGTLCVSTQAGCAV 116
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G E P R+I+N+VMMG
Sbjct: 117 NCRFCSTGKQGFNRNLSVAEIIGQLWMAEFELRKTKGIEGG-----PKGERQITNVVMMG 171
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+ +L + D S+RR+TLSTSG VP I ++ +E V LA+SLHA
Sbjct: 172 MGEPLLNFEPTVTALRLMLDDNAYGLSRRRVTLSTSGVVPMIGKLSQECPVALAVSLHAS 231
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ L+P+NRK+PL L+ AC+ Y + ITFEY ML G+ND+ A L+ ++
Sbjct: 232 NDALRDSLIPLNRKHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALV 291
Query: 307 KG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K IP K NLIPFNP+P S I F++ + +G + IR RG DI AAC
Sbjct: 292 KEGETAIPCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAAC 351
Query: 363 GQLKSLSKRIPKVPRQEMQIT 383
GQL K +V + ++
Sbjct: 352 GQLAGEVKDRTRVQERMQKMA 372
>gi|309782324|ref|ZP_07677051.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
gi|308918942|gb|EFP64612.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
Length = 383
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 16/372 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + L +G R Q+ +WI+ G DF M+D+++ +R L
Sbjct: 5 VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGASDFGEMTDLAKSLREKLAT 60
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSSQ GC++
Sbjct: 61 RANIQAPAVITDHLSSDGTRKWLVDV-----GQGNAVETVYIPEETRGTLCVSSQAGCAV 115
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A + G P R I+N+VMMG
Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGRG-------PKDDRVITNVVMMG 168
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+D V +L++ D S+RR+T+STSG VP + R+ ++ V LA+SLHA
Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR++LVP+N+KYPL L+ AC Y + ITFEY ML G+ND+ A L++++
Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACCRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI AACGQL
Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 349 GEVKDRTRLAER 360
>gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
Length = 364
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
Length = 392
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 158/382 (41%), Positives = 215/382 (56%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ R+++ ++G R Q+ KW+Y DF M+DI++ +R L
Sbjct: 24 EKINLLDFNRQQMRAFFAQLG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLRGKL 79
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+VDE+ S DGT KW + +ETVYIPE R TLCVSSQVGC
Sbjct: 80 QAIAEIRAPEVVDEQRSSDGTIKWAILV------DGQRVETVYIPEDDRATLCVSSQVGC 133
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 134 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 183
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L
Sbjct: 244 APTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQL 303
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 304 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363
Query: 363 GQLKSL-SKRIPKVPRQEMQIT 383
GQL R + +++M+
Sbjct: 364 GQLAGEVVDRTKRTLKKKMERD 385
>gi|253999428|ref|YP_003051491.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4]
gi|253986107|gb|ACT50964.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4]
Length = 367
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 219/377 (58%), Gaps = 21/377 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + +L E +G R Q+ +W++ G+ DF M+DI++ +R L
Sbjct: 3 VNLLNYSQPQLAEYFHGLG----EKPFRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKD 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P I E+IS DGTRKWL+ G +ETV+IPE RGTLCVSSQVGC+L
Sbjct: 59 QAEITPPGIKLEQISEDGTRKWLID-----AGTGNGVETVFIPEAERGTLCVSSQVGCAL 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNLT EI+ Q+ +A LG P R ISN+VMMG
Sbjct: 114 ECTFCSTGRQGFNRNLTVSEIIGQLWVANKALGRDPKG-----------DRIISNVVMMG 162
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV +L+I D S+RR+T+STSG VP + R+ E V LA+SLHA
Sbjct: 163 MGEPLANFDNVVTALNIMLDDSAYGLSRRRVTVSTSGMVPAMDRLREACPVALAVSLHAP 222
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+++VPIN+KYP++ L+ AC+ Y + +TFEYVML G+NDS A L+ I+
Sbjct: 223 NDALRDVIVPINKKYPIKELMAACQRYLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIV 282
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P Y S + I F + + ++ Y R RG DI AACGQL
Sbjct: 283 RDVPCKFNLIPFNPFPNSGYDTSKPEAIRRFRDVLMQADYVVTTRKTRGDDIDAACGQLA 342
Query: 367 SLSK-RIPKVPRQEMQI 382
+ + + R ++
Sbjct: 343 GKVQDKTRRTERNKVMQ 359
>gi|221198083|ref|ZP_03571129.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M]
gi|221204358|ref|ZP_03577375.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2]
gi|221212767|ref|ZP_03585743.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1]
gi|221166980|gb|EED99450.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1]
gi|221175215|gb|EEE07645.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2]
gi|221182015|gb|EEE14416.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M]
Length = 378
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 215/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI P+IV + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASITMPDIVSDHVSADGTRKWLVDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|329912290|ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium
IMCC9480]
gi|327545652|gb|EGF30807.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium
IMCC9480]
Length = 388
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 147/384 (38%), Positives = 219/384 (57%), Gaps = 18/384 (4%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +L+ + +L ++G R Q+ +WI+ G DF M+D+++ +R
Sbjct: 1 MALTNLLDLDPAQLVAYCGELG----EKPFRAKQLQRWIHQFGASDFTAMTDLAKSLRDK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + P ++ + S DGTRKWLL G +ETV+IPE++RGTLC+S+Q G
Sbjct: 57 LATRAVVQSPAVISDHTSTDGTRKWLLDV-----GQGNAVETVFIPEENRGTLCISTQAG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG Q RNLT EI+ Q+ +A L G E P R+I+N+V
Sbjct: 112 CAVNCRFCSTGKQGFNRNLTVGEIIGQLWMAEFELRKTKGIEPG-----PKGERQITNVV 166
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N++ +L + D S+RR+TLSTSG VPNI ++G++ V LA+SL
Sbjct: 167 MMGMGEPLLNYEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPNIDKLGQDCPVALAVSL 226
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ LR+ LVP+N+KYPL+ L+ AC Y + +TFEY ML G+ND+ + A L+
Sbjct: 227 HASNDALRDSLVPLNKKYPLKELMAACVRYLEFAPRDFVTFEYCMLDGVNDTEQHARELV 286
Query: 304 KILKG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+++ +P K NLIPFNP+P S+ I F++ + +G + IR RG DI
Sbjct: 287 ALVRHGAQLVPCKFNLIPFNPFPESGLTRSNNPQIKLFAQVLMDAGIVTTIRKTRGDDID 346
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL + KV + ++
Sbjct: 347 AACGQLAGEVQDRTKVQERMQKMA 370
>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
gi|81368632|sp|Q5WWH4|RLMN_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
Length = 382
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 173/378 (45%), Positives = 231/378 (61%), Gaps = 21/378 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +K +L+ +L E L+ R Q+++WI+ GIRDF M+++ + +
Sbjct: 1 MDQ-QKVNLLNYNYLQLRELLMAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVL 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R+ L+Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSS
Sbjct: 56 RNKLSQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC T Q RNL+ EI+ QV LA L D G D +KI+
Sbjct: 111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHD----------KKIT 160
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NFDNV +++I D + SKRR+TLSTSG +P + R+ E V LA
Sbjct: 161 NVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSPVALA 220
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A
Sbjct: 221 VSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHAS 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LIK+L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI A
Sbjct: 281 QLIKLLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDA 340
Query: 361 ACGQLKSLSK-RIPKVPR 377
ACGQL K + + R
Sbjct: 341 ACGQLAGEVKDKTSRSQR 358
>gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491]
gi|205829822|sp|A1ISB3|RLMN_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
Length = 364
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090]
gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945]
gi|239999168|ref|ZP_04719092.1| hypothetical protein Ngon3_06775 [Neisseria gonorrhoeae 35/02]
gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18]
gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140]
gi|240080485|ref|ZP_04725028.1| hypothetical protein NgonF_04112 [Neisseria gonorrhoeae FA19]
gi|240113147|ref|ZP_04727637.1| hypothetical protein NgonM_06171 [Neisseria gonorrhoeae MS11]
gi|240118201|ref|ZP_04732263.1| hypothetical protein NgonPID_07036 [Neisseria gonorrhoeae PID1]
gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1]
gi|240123749|ref|ZP_04736705.1| hypothetical protein NgonP_07399 [Neisseria gonorrhoeae PID332]
gi|240125940|ref|ZP_04738826.1| hypothetical protein NgonSK_06937 [Neisseria gonorrhoeae SK-92-679]
gi|240128452|ref|ZP_04741113.1| hypothetical protein NgonS_07451 [Neisseria gonorrhoeae SK-93-1035]
gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|75356171|sp|Q5F911|RLMN_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807190|sp|B4RMG2|RLMN_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 364
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ SI P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQASIEIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++ + +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|167562546|ref|ZP_02355462.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
EO147]
Length = 378
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GSGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G E R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGREPGPNGRA---DRVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + ++G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P + S I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacterium sp. Marseille]
gi|205829777|sp|A6SZX3|RLMN_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|151280956|gb|ABR89366.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 387
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 143/383 (37%), Positives = 215/383 (56%), Gaps = 16/383 (4%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+L+ + +L ++G R Q+ +WI+ G DF M+D+++ +R
Sbjct: 1 MTTLTNLLDLDPAQLIAYCGELG----EKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRD 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P ++ + S DGTRKWL+ G +ETV+IPE++RGTLC+S+Q
Sbjct: 57 KLATRAIIAAPAVISDHTSADGTRKWLVDV-----GQGNAVETVFIPEENRGTLCISTQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG Q RNL+ E++ Q+ +A L G E P R+I+N+
Sbjct: 112 GCAVNCRFCSTGKQGFNRNLSVGEVIGQLWMAEFELRRTKGIEPG-----PKGERQITNV 166
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N++ +L + D S+RR+TLSTSG VP I ++ ++ V LA+S
Sbjct: 167 VMMGMGEPLLNYEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVS 226
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ LR+ LVP+N+KYPL L+ AC+ Y + +TFEY ML G+NDS + A L
Sbjct: 227 LHASNDALRDGLVPLNKKYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHAREL 286
Query: 303 IKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
I +++ +P K NLIPFNP+P S I F++ + +G + +R RG DI A
Sbjct: 287 IALVRQADVPCKFNLIPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDIDA 346
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL + +V + ++
Sbjct: 347 ACGQLAGEVQDRTRVQDRMKKMA 369
>gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|205829928|sp|A1JKR9|RLMN_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 398
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 160/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 30 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 86 QRVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G V + R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVM 189
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKMA 389
>gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
Length = 404
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 143/386 (37%), Positives = 206/386 (53%), Gaps = 24/386 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ +R
Sbjct: 1 MTTANLLDFDLDGLVVFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLRAK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L I ++ ++ S DGT KWL G +E VYIPE RGTLCVSSQ G
Sbjct: 57 LKTAAHIQGLPVITQQESADGTIKWLFDV-----GDGNAVEAVYIPEDDRGTLCVSSQAG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG Q RNL+ EI+ Q+ A L + R I+N+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHFLR----ARRQHPLQPGEDHRVITNVV 167
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N+ + +L + D G S+RR+T+STSG VP + R+ E+ V LA+SL
Sbjct: 168 MMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRLTVSTSGVVPMMERLSEDCPVALAVSL 227
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ LR+ LVP+NRKYP+ L+D C Y + ITFEY ML G+ND P A L+
Sbjct: 228 HAPNDGLRDGLVPLNRKYPIHELLDTCLSYLAHAPRDFITFEYCMLDGVNDQPEHARELL 287
Query: 304 KILKGIP-----------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
+++ K+NLIPFNP+P S + + F++ + +G + +R
Sbjct: 288 ALMQVFRQRAADLGHGVGCKLNLIPFNPFPESGLKRSPGERVQAFAKILLEAGIVTTVRK 347
Query: 353 PRGLDILAACGQLKSLSKRIPKVPRQ 378
RG DI AACGQL + V +
Sbjct: 348 TRGDDIDAACGQLAGDVQDRTSVDAR 373
>gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
Length = 364
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLT+ EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|330999629|ref|ZP_08323338.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329574135|gb|EGG55711.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 389
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 156/379 (41%), Positives = 218/379 (57%), Gaps = 16/379 (4%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+G E L++ +G R Q+ +WI+ RG RDF M+D+++ R L
Sbjct: 8 QKVNLLGFDAEGLKKFCEDLG----EKPFRAKQLERWIHRRGARDFSEMTDLAKSFRAKL 63
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PEI+ +K + DGTRKWLL G +E VYIP+ RGTLCVSSQ GC
Sbjct: 64 EKVAEIRGPEIIRDKTAADGTRKWLLDV-----GSGNAVEMVYIPQDGRGTLCVSSQAGC 118
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC TG Q RNL A EI+ Q+ A L G D R ISN+VM
Sbjct: 119 AMNCLFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITD-------ENERVISNVVM 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N D V SL + D S+RR+T+STSG V + ++ E+ V LA+SLH
Sbjct: 172 MGMGEPLQNLDAVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLH 231
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++P+NRK+PLE L+ AC+ Y + ITFEY+++ G+NDS A LI
Sbjct: 232 APNNELRDKIMPVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELIT 291
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+++ IP K NLIPFNP+PG S +++ F++ + +G + +R RG DI AACGQ
Sbjct: 292 LVQDIPCKFNLIPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQ 351
Query: 365 LKSLSKRIPKVPRQEMQIT 383
L K K+ +
Sbjct: 352 LAGEIKDRTKLAEKRANRE 370
>gi|241668466|ref|ZP_04756044.1| radical SAM superfamily protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877000|ref|ZP_05249710.1| radical SAM family protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843021|gb|EET21435.1| radical SAM family protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 370
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 156/382 (40%), Positives = 233/382 (60%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +R+ L
Sbjct: 4 DKINLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ I+ P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60 RENAEIVIPKVVFNKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL++ E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L++
Sbjct: 224 APTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLVE 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L+ +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLRSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL K + ++ G
Sbjct: 344 GQLAGDVMDKTKRKERYLKKLG 365
>gi|187928149|ref|YP_001898636.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
gi|254807195|sp|B2U9U6|RLMN_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|187725039|gb|ACD26204.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
Length = 383
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 215/372 (57%), Gaps = 16/372 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + L +G R Q+ +WI+ G +F M+D+++ +R L
Sbjct: 5 VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGASEFGEMTDLAKSLREKLAT 60
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSSQ GC++
Sbjct: 61 RANIQAPAVISDHLSSDGTRKWLVDV-----GQGNAVETVYIPEETRGTLCVSSQAGCAV 115
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A + G P R I+N+VMMG
Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGRG-------PKDDRVITNVVMMG 168
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+D V +L++ D S+RR+T+STSG VP + R+ ++ V LA+SLHA
Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND+ A L++++
Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI AACGQL
Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 349 GEVKDRTRLAER 360
>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
atrosepticum SCRI1043]
gi|81644326|sp|Q6D273|RLMN_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 398
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 162/379 (42%), Positives = 218/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ + + +G R Q+ KW+Y DF M+DI++ R L
Sbjct: 31 KINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVFRTKLQ 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+VDE+ S DGT KW + G +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 87 EIAEIRAPEVVDEQRSSDGTIKWAILV------GGQRVETVYIPEEERATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G F R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTG----------QRPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L
Sbjct: 251 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370
Query: 364 QLKSL-SKRIPKVPRQEMQ 381
QL R + +++M
Sbjct: 371 QLAGEVVDRTKRTLKKKMA 389
>gi|313201450|ref|YP_004040108.1| radical sam enzyme, cfr family [Methylovorus sp. MP688]
gi|312440766|gb|ADQ84872.1| radical SAM enzyme, Cfr family [Methylovorus sp. MP688]
Length = 367
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 219/377 (58%), Gaps = 21/377 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + +L E +G R Q+ +W++ G+ DF M+DI++ +R L
Sbjct: 3 VNLLNYSQPQLAEYFHGLG----EKPFRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKD 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P I E+IS DGTRKWL+ G +ETV+IPE RGTLCVSSQVGC+L
Sbjct: 59 QAEITPPGIKLEQISEDGTRKWLID-----AGTGNGVETVFIPEAERGTLCVSSQVGCAL 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNL+ EI+ Q+ +A LG P R ISN+VMMG
Sbjct: 114 ECTFCSTGRQGFNRNLSVSEIIGQLWVANKALGRDPKG-----------DRIISNVVMMG 162
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV +L+I D S+RR+T+STSG VP + R+ E V LA+SLHA
Sbjct: 163 MGEPLANFDNVVTALNIMLDDSAYGLSRRRVTVSTSGMVPAMDRLREACPVALAVSLHAP 222
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+++VPIN+KYP++ L+ AC+ Y + +TFEYVML G+NDS A L+ I+
Sbjct: 223 NDALRDVIVPINKKYPIKELMAACQRYLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIV 282
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P Y S + I F + + ++ Y R RG DI AACGQL
Sbjct: 283 RDVPCKFNLIPFNPFPNSGYDTSKPEAIRRFRDVLMQADYVVTTRKTRGDDIDAACGQLA 342
Query: 367 SLSK-RIPKVPRQEMQI 382
+ + + R ++
Sbjct: 343 GKVQDKTRRTERNKVMQ 359
>gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
Length = 399
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 157/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E + +G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 31 KINLLDLNRKQMREFFINMG----EKPFRADQVMKWMYHYCSDDFEQMTDINKALREKLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+ E+ S DGT KW ++ G +ETVYIP+ R TLCVSSQVGC+
Sbjct: 87 RVAEIRAPEVASEQRSTDGTIKWAIQV------GGQLVETVYIPDGDRATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 141 LECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVAGTRPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +R+ +VPINRKY ++ + A Y SNA R+T EYVML IND A L
Sbjct: 251 PNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P KINLIP+NP+PG Y S I FS+ + G++ +R RG DI AACG
Sbjct: 311 ERLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTVIVRKTRGDDIDAACG 370
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + +++M
Sbjct: 371 QLAGDVIDRTKRTLKKKMA 389
>gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
Length = 398
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 221/379 (58%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R++L E ++G R Q+ KW+Y DF+ M+DI++ +R+ L
Sbjct: 31 KINLLDLNRQQLREFFAELG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQ 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+
Sbjct: 87 SIAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGQRPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +R+ +VPINRKY +E + + R Y SNA R+T EYVML INDS DA L
Sbjct: 251 PNDTIRDEIVPINRKYNIETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKMA 389
>gi|303257588|ref|ZP_07343600.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
gi|302859558|gb|EFL82637.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
Length = 384
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 156/379 (41%), Positives = 218/379 (57%), Gaps = 16/379 (4%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+G E L++ +G R Q+ +WI+ RG RDF M+D+++ R L
Sbjct: 3 QKVNLLGFDAEGLKKFCEDLG----EKPFRAKQLERWIHRRGARDFSEMTDLAKSFRAKL 58
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PEI+ +K + DGTRKWLL G +E VYIP+ RGTLCVSSQ GC
Sbjct: 59 EKVAEIRGPEIIRDKTAADGTRKWLLDV-----GSGNAVEMVYIPQDGRGTLCVSSQAGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC TG Q RNL A EI+ Q+ A L G D R ISN+VM
Sbjct: 114 AMNCLFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITD-------ENERVISNVVM 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N D V SL + D S+RR+T+STSG V + ++ E+ V LA+SLH
Sbjct: 167 MGMGEPLQNLDAVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++P+NRK+PLE L+ AC+ Y + ITFEY+++ G+NDS A LI
Sbjct: 227 APNNELRDKIMPVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELIT 286
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+++ IP K NLIPFNP+PG S +++ F++ + +G + +R RG DI AACGQ
Sbjct: 287 LVQDIPCKFNLIPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQ 346
Query: 365 LKSLSKRIPKVPRQEMQIT 383
L K K+ +
Sbjct: 347 LAGEIKDRTKLAEKRANRE 365
>gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC]
gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC]
Length = 374
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 150/382 (39%), Positives = 212/382 (55%), Gaps = 25/382 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + + + ++G R R +Q+++WI+ RG DF MSD+++ +R L
Sbjct: 3 TNLLDLDLDAMAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKG 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + + E S DGT KWL GG +ETV+IPE RGTLC+SSQ GC++
Sbjct: 59 CAHVSGLQAISEHASADGTVKWLFDV-----GGGNAVETVFIPEDDRGTLCISSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNLT EI+ Q+ A +L G R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRG----------DGERVISNVVMMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L I D G S+RR+T+STSG VP + R+G + V LA+SLHA
Sbjct: 164 MGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAP 223
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++LR+ LVP+NRKYPL+ L+ ACR Y + ITFEY ML G+ND P A LI ++
Sbjct: 224 NDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALV 283
Query: 307 KG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ K NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 284 SRKAADGGVSCKFNLIPFNPFPASGLRRSPAAAVSAFAKLLSDAGIVTTVRKTRGDDIDA 343
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL K +V + ++
Sbjct: 344 ACGQLAGDVKDRTRVGERMARL 365
>gi|88799903|ref|ZP_01115475.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297]
gi|88777334|gb|EAR08537.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297]
Length = 386
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 152/374 (40%), Positives = 216/374 (57%), Gaps = 20/374 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+GM +E + R R +Q+ KWI+ RG+ DF M+D+S+ +R L
Sbjct: 7 KVNLLGMGMAAMERFFTE---ELGEKRFRATQVLKWIHQRGVDDFDDMTDVSKSLREKLK 63
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+ +K S DGTRKW+++ P G +ETVYIPE RGTLCVSSQ+GC+
Sbjct: 64 AVAVIDAPEVTFKKFSKDGTRKWVMKMP-----GGSAVETVYIPEDDRGTLCVSSQIGCA 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+L+A EI+ Q+ +A + R ++N+VMM
Sbjct: 119 LDCSFCSTGKQGFNRDLSAAEIIGQLWVAARSWDE----------PGKKRERHVTNVVMM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV +++++ + SKRR+TLSTSG VP I + EE V +A+SLHA
Sbjct: 169 GMGEPLLNYDNVVEAMNLMMEDNAYGLSKRRVTLSTSGVVPRILDLAEETDVSMALSLHA 228
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
++ LRN LVP+N++Y L+ +DA Y +R+ T EY ++ +ND P A L+
Sbjct: 229 PNDALRNELVPLNKRYGLKQTLDAVNTYFARLPDKRVPTIEYTLINEVNDKPEHAHELVD 288
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ P KINLIPFNP+P Y I F + + ++GY+ +R RG DI AACGQ
Sbjct: 289 LLRETPCKINLIPFNPFPNSGYERPSNNRIHRFKDILHQAGYNVTVRKTRGDDIDAACGQ 348
Query: 365 LKSLS-KRIPKVPR 377
L + + R
Sbjct: 349 LVGQVADKTRRSVR 362
>gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
Length = 398
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 160/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 30 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 86 QRVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G V + R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVM 189
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKMA 389
>gi|138894695|ref|YP_001125148.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
thermodenitrificans NG80-2]
gi|205829768|sp|A4IM49|RLMN_GEOTN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|134266208|gb|ABO66403.1| Radical SAM family enzyme [Geobacillus thermodenitrificans NG80-2]
Length = 364
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 128/368 (34%), Positives = 202/368 (54%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + +EL+E L+ G R +QI++W+Y + + DF M+++ + +R L
Sbjct: 19 PSIYSLTLDELKEWLVAHG----EKPFRATQIYEWLYGKRVTDFAEMTNLPKRLREQLAS 74
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FSI + + ++ S DGT K+L IETV + ++CV++QVGC +
Sbjct: 75 AFSITTLKTIVKQTSKDGTIKFLFELH-----DGYSIETVLMRHNYGNSVCVTTQVGCRI 129
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A EI+ QV+ + L + ++S+IV+MG
Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMG 175
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP N+D + K L I + S GL+ R IT+STSG +P I + +E + + AISLHA
Sbjct: 176 IGEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 235
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR L+PIN+ YPL L++A R+Y + RR+TFEY + G+ND A L ++
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMEAVRYYIEKT-GRRVTFEYGLFGGVNDQLEHAEQLAEL 294
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL
Sbjct: 295 LKGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQL 354
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 355 RAKERKEE 362
>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
Length = 383
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 150/388 (38%), Positives = 212/388 (54%), Gaps = 26/388 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+N + +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ +
Sbjct: 7 VNVMT-TNLLDFDLDGLAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSL 61
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + + + E +S DGT KWL G +ETV+IPE RGTLC+SS
Sbjct: 62 REKLRGCAHVAGLQAISEHVSADGTVKWLFDV-----GDGNAVETVFIPEDDRGTLCISS 116
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNLT EIL Q+ A L G R IS
Sbjct: 117 QAGCAVGCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRG----------DGERVIS 166
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA
Sbjct: 167 NVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALA 226
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+NRKYPL L+ ACR Y + ITFEY ML+G+ND P A
Sbjct: 227 VSLHAPNDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHAR 286
Query: 301 NLIKILKG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
LI ++ + K NLIPFNP+P S + F++ + +G + +R R
Sbjct: 287 QLIDLVGRKAADGGVSCKFNLIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTR 346
Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQI 382
G DI AACGQL K +V + ++
Sbjct: 347 GDDIDAACGQLAGDVKDRTRVNERMAKL 374
>gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430]
gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946]
gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430]
gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158]
Length = 388
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 161/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ L
Sbjct: 20 EKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFNEMTDINKVFRNRL 75
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ G ++ETVYIPEK R TLCVSSQVGC
Sbjct: 76 QELAEIRAPEVAEEQRSADGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 129
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ +R+ +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A L
Sbjct: 240 APNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 299
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 300 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 359
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 360 GQLAGDVIDRTKRTLKKKMA 379
>gi|167569729|ref|ZP_02362603.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
C6786]
Length = 378
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 148/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GSGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G E R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGREPGPNGRA---DRVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + ++G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+NRK+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P + S I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666]
gi|123164823|sp|Q12AB5|RLMN_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666]
Length = 382
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 148/383 (38%), Positives = 207/383 (54%), Gaps = 25/383 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L+ E L +G R R +Q+++WI+ +G DF M+D+++ +R L
Sbjct: 4 NLLDYDLEGLAAFCEGLG----EKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGS 59
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I P++V S DGT KWL G IE V+IPE RGTLC+SSQ GC++
Sbjct: 60 AHIQGPKVVSRHDSADGTIKWLFDV-----GAGDVIEAVFIPETDRGTLCISSQAGCAVG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG Q RNLT EI+ Q+ A L G ++ R ISN+VMMGM
Sbjct: 115 CRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQE----------RVISNVVMMGM 164
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N+ + +L + D G S+RR+T+STSG VP I R+ ++ V LA+SLHA
Sbjct: 165 GEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQ 224
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ LR+ LVP+N+KYP+ L+ AC Y + ITFEY ML G+ND P A L+ +++
Sbjct: 225 DALRDSLVPLNKKYPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQ 284
Query: 308 G-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ K NLIPFNP+P S + F++ + +G + +R RG DI AAC
Sbjct: 285 NHSAGGLSCKFNLIPFNPFPASGLKRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAAC 344
Query: 363 GQLKSLSKRIPKVPRQ-EMQITG 384
GQL + V R+ Q G
Sbjct: 345 GQLAGDVQDRTSVDRRIAAQRQG 367
>gi|167836392|ref|ZP_02463275.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
MSMB43]
Length = 378
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 146/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GNGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G R ++N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVVTNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+NRK+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTQAHARELLALT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGIVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
+ ++ +
Sbjct: 355 GAVRDRTRLAER 366
>gi|167719265|ref|ZP_02402501.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
DM98]
Length = 378
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GNGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQILIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|196247685|ref|ZP_03146387.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
gi|196212469|gb|EDY07226.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
Length = 366
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 128/368 (34%), Positives = 202/368 (54%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + +EL+E L+ G R +QI++W+Y + + DF M+++ + +R L
Sbjct: 21 PSIYSLTLDELKEWLVAHG----EKPFRATQIYEWLYGKRVTDFAEMTNLPKRLREQLAS 76
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FSI + + ++ S DGT K+L IETV + ++CV++QVGC +
Sbjct: 77 AFSITTLKTIVKQTSKDGTIKFLFELH-----DGYSIETVLMRHNYGNSVCVTTQVGCRI 131
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A EI+ QV+ + L + ++S+IV+MG
Sbjct: 132 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMG 177
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP N+D + K L I + S GL+ R IT+STSG +P I + +E + + AISLHA
Sbjct: 178 IGEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 237
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR L+PIN+ YPL L++A R+Y + RR+TFEY + G+ND A L ++
Sbjct: 238 PTTELRTKLMPINKAYPLPKLMEAVRYYIEKT-GRRVTFEYGLFGGVNDQLEHAEQLAEL 296
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL
Sbjct: 297 LKGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQL 356
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 357 RAKERKEE 364
>gi|92114968|ref|YP_574896.1| hypothetical protein Csal_2851 [Chromohalobacter salexigens DSM
3043]
gi|123387343|sp|Q1QTL1|RLMN_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|91798058|gb|ABE60197.1| 23S rRNA m(2)A-2503 methyltransferase [Chromohalobacter salexigens
DSM 3043]
Length = 375
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 157/377 (41%), Positives = 220/377 (58%), Gaps = 18/377 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+G+ REE+E + +G + R +Q+ KWI+ G DF M+++S+ +R L
Sbjct: 9 RTNLLGLTREEMESFFVSLG----EKKFRAAQVMKWIHHEGCADFASMTNLSKALRTRLE 64
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P +V E S DGTRKW+L V I R TLCVSSQVGCS
Sbjct: 65 ELAEIRGPRVVYEGTSQDGTRKWVLEVEDGSYVETVLIPA---EGGKRRTLCVSSQVGCS 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q RNLT+ EI+ QV +A + G + R ++N+VMM
Sbjct: 122 LDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFG----------ARRDTTNRPVTNVVMM 171
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+DNV ++ + D G SKRR+TLSTSG VP + ++G+E+ V LA+SLHA
Sbjct: 172 GMGEPLLNYDNVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGDELDVSLAVSLHA 231
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
+++LRN LVP+NRKY + L+DACR Y + R+ T EY ++K +ND A L
Sbjct: 232 ANDELRNELVPLNRKYNIATLLDACRRYLAKCDDTRMLTIEYTLIKDVNDQQHHAEELAA 291
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L +P+KINLIPFNP+P Y + ++ F + + GY++ +RT RG DI AACGQ
Sbjct: 292 LLADLPSKINLIPFNPFPHSGYEKPSRNQVMRFQQWLYDLGYTALVRTTRGDDIDAACGQ 351
Query: 365 LKSLSKRIPKVPRQEMQ 381
L K K + +Q
Sbjct: 352 LVGRVKDRTKRHERYIQ 368
>gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
Length = 398
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 30 NKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 86 QRVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVM 189
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKMA 389
>gi|134295845|ref|YP_001119580.1| radical SAM protein [Burkholderia vietnamiensis G4]
gi|205829687|sp|A4JEP2|RLMN_BURVG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|134139002|gb|ABO54745.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia vietnamiensis
G4]
Length = 379
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 147/378 (38%), Positives = 214/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRATIGMPEIASDHVSADGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|15803040|ref|NP_289070.1| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933]
gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 384
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 156/379 (41%), Positives = 213/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+ E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKXXNXETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375
>gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica W22703]
Length = 397
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 29 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKL 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 85 QRVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 138
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 139 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVM 188
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 189 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 248
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L
Sbjct: 249 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 308
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 309 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 368
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 369 GQLAGEVIDRTKRTLKKKMA 388
>gi|206560249|ref|YP_002231013.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
gi|254807159|sp|B4EAX1|RLMN_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|198036290|emb|CAR52186.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
Length = 379
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 149/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI+ PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASIVMPEIASDHVSTDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2]
gi|205829800|sp|A1VNF1|RLMN_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas
naphthalenivorans CJ2]
Length = 382
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 150/384 (39%), Positives = 210/384 (54%), Gaps = 25/384 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ E L ++G R R +Q+++WI+ +G DF+ M+D+++ +R L
Sbjct: 3 TNLLDFDLEGLAAFCEQLG----QKRFRATQLFRWIHQKGASDFEQMTDLAKSLREKLAV 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I +V S DGT KWL G IETV+IPE RGTLC+SSQ GC++
Sbjct: 59 SAHIQGLNVVSRHESADGTIKWLFDV-----GAGDVIETVFIPETDRGTLCISSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNLT EI+ Q+ A L G + R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRKHLGRNE----------RVISNVVMMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L + + G S+RR+T+STSG VP I R+ ++ V LA+SLHA
Sbjct: 164 MGEPLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAP 223
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR+ LVP+N+KYP+ L++AC Y + ITFEY ML G+ND P A L+ ++
Sbjct: 224 QDALRSNLVPLNKKYPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPEHARQLVALM 283
Query: 307 KG-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
K + K NLIPFNP+P L SD ++ F++ + +G + +R RG DI AA
Sbjct: 284 KTHAANGLSCKFNLIPFNPFPASGLLRSDMPQVMAFAKILMDAGIITTVRKTRGDDIDAA 343
Query: 362 CGQLKSLSK-RIPKVPRQEMQITG 384
CGQL + R R Q G
Sbjct: 344 CGQLAGDVQDRTSVDQRMAAQRQG 367
>gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 397
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 158/380 (41%), Positives = 217/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 29 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKL 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DG KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 85 QRVAEIRAPEVAEEQRSTDGAIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 138
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 139 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVM 188
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 189 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 248
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L
Sbjct: 249 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 308
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 309 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 368
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 369 GQLAGEVIDRTKRTLKKKMA 388
>gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
Length = 398
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 218/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E K+G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+
Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGERATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKSTGT----------RPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKMA 389
>gi|239815175|ref|YP_002944085.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
Length = 382
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 147/384 (38%), Positives = 209/384 (54%), Gaps = 22/384 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +L+ E L K+G R R +Q+++WI+ RG DF M+D+++ +R
Sbjct: 1 MTTANLLEFDLEGLAAFCEKLG----EKRFRATQLFRWIHQRGASDFAQMTDLAKSLREK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + ++ + S DGT KWL G +E V+IPE RGTLCVSSQ G
Sbjct: 57 LATTARVEALPVITQHESKDGTIKWLFDV-----GDGNAVEAVFIPEDDRGTLCVSSQAG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG Q RNL+ EI+ Q+ A L + R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKH----------LKRDERVISNVV 161
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N+ + +L D S+RR+T+STSG VP I R+G + V +A+SL
Sbjct: 162 MMGMGEPLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCPVAMAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ LR+ LVP+NRKYP+ L++AC+ Y + ITFEY ML G+ND P A L+
Sbjct: 222 HAPNDALRDDLVPLNRKYPIAELLEACKRYLVHAPRDFITFEYCMLDGVNDQPEHARQLV 281
Query: 304 KILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++++ K NLIPFNP+P L S Q ++ F++ + +G + +R RG DI AA
Sbjct: 282 ELVRTHGVSCKFNLIPFNPFPASGLLRSPQPRVLAFAKALSEAGLVTTVRKTRGDDIDAA 341
Query: 362 CGQLKSLSK-RIPKVPRQEMQITG 384
CGQL K R R + G
Sbjct: 342 CGQLAGDVKDRTRAAERMAQRRVG 365
>gi|254358299|ref|ZP_04974572.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280]
gi|148027426|gb|EDK85447.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280]
Length = 378
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNADDFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GNGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
Length = 364
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSRYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
Length = 369
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 152/380 (40%), Positives = 206/380 (54%), Gaps = 25/380 (6%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ E L ++G R R +Q+++WI+ RG DF M+D+++ +R L
Sbjct: 2 LDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH 57
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
I +V E +S DGT KWL G +E+V+IPE RGTLCVSSQ GC++ C
Sbjct: 58 ITALPVVTEHVSADGTVKWLFDV-----GDGNAVESVFIPEDDRGTLCVSSQAGCAVGCR 112
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG Q RNL EIL Q+ A L G ED R ISN+VMMGMGE
Sbjct: 113 FCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMGMGE 162
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
PL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA ++
Sbjct: 163 PLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDP 222
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR+ LVP+N+KYP+ L+DAC Y + ITFEY ML G+ND A LI++++
Sbjct: 223 LRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQLEHARQLIELVRAR 282
Query: 310 -----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K NLIPFNP+P L S + F+ + +G + +R RG DI AACGQ
Sbjct: 283 GDGKSWCKFNLIPFNPFPASGLLRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQ 342
Query: 365 LKSLSK-RIPKVPRQEMQIT 383
L K R R Q T
Sbjct: 343 LAGDVKDRTRAAERMAKQRT 362
>gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
Length = 398
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 215/379 (56%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 31 KINLLDLNRQQMREFFAQMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKALRAKLQ 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+ E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+
Sbjct: 87 RVAEIRAPEVAQEQRSADGTIKWAITVGD------QQVETVYIPEADRATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
++D+RN +VPINRKY +E + A R Y S N R+T EYVML INDS A L
Sbjct: 251 PTDDIRNEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + ++ M
Sbjct: 371 QLAGEVIDRTKRTLKKRMA 389
>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
gi|205829704|sp|A1W574|RLMN_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
Length = 374
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 149/382 (39%), Positives = 209/382 (54%), Gaps = 25/382 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + L ++G R R +Q+++WI+ RG DF MSD+++ +R L
Sbjct: 3 TNLLDFDLDGLAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRG 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + + E +S DGT KWL G +ETV+IPE RGTLC+SSQ GC++
Sbjct: 59 CAHVAGLQAISEHVSADGTVKWLFDV-----GDGNAVETVFIPEDDRGTLCISSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNLT EIL Q+ A L G R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRG----------DGERVISNVVMMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA
Sbjct: 164 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAP 223
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+NRKYPL L+ ACR Y + ITFEY ML+G+ND P A LI ++
Sbjct: 224 NDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLV 283
Query: 307 KG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ K NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 284 GRKAADGGVSCKFNLIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDA 343
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL K +V + ++
Sbjct: 344 ACGQLAGDVKDRTRVNERMAKL 365
>gi|167893945|ref|ZP_02481347.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
7894]
gi|167918665|ref|ZP_02505756.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
BCC215]
Length = 378
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GNGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMERLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|254673132|emb|CBA07913.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|325144551|gb|EGC66850.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
Length = 364
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI D G S+RR+T+STSG +P + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMIPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS]
Length = 384
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 145/381 (38%), Positives = 208/381 (54%), Gaps = 21/381 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +L+ E L K+G R R +Q+++WI+ RG DF M+D+++ +R
Sbjct: 1 MTTANLLDFDLEGLAAFCEKLG----EKRFRATQLFRWIHQRGASDFTQMTDLAKSLREK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + ++ + S DGT KWL G +E V+IPE RGTLCVSSQ G
Sbjct: 57 LATTARVEALPVLTQHESKDGTIKWLFDV-----GDGNAVEAVFIPEDDRGTLCVSSQAG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG Q RNL+ EI+ Q+ A L + R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKH----------LKRDERVISNVV 161
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N+ + +L D S+RR+T+STSG VP I R+G + V +A+SL
Sbjct: 162 MMGMGEPLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGTDCAVAMAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ LR+ LVP+NRKYP+ L++AC+ Y + ITFEY ML G+ND P A L+
Sbjct: 222 HAPNDALRDDLVPLNRKYPIAELLEACKRYLEHAPRDFITFEYCMLDGVNDQPEHARQLV 281
Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++++ + K NLIPFNP+P L S Q ++ F+ + +G + +R RG DI AA
Sbjct: 282 ELVRKHDVSCKFNLIPFNPFPASGLLRSPQPRVLAFARTLSEAGLVTTVRKTRGDDIDAA 341
Query: 362 CGQLKSLSKRIPKVPRQEMQI 382
CGQL K + + Q
Sbjct: 342 CGQLAGDVKDRTRAAERMAQR 362
>gi|161524634|ref|YP_001579646.1| radical SAM protein [Burkholderia multivorans ATCC 17616]
gi|189350610|ref|YP_001946238.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616]
gi|160342063|gb|ABX15149.1| radical SAM enzyme, Cfr family [Burkholderia multivorans ATCC
17616]
gi|189334632|dbj|BAG43702.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616]
Length = 378
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 147/378 (38%), Positives = 215/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ +F GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGNFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI P+IV + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASITMPDIVSDHVSADGTRKWLVDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|172060774|ref|YP_001808426.1| radical SAM protein [Burkholderia ambifaria MC40-6]
gi|205829677|sp|B1YR46|RLMN_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|171993291|gb|ACB64210.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MC40-6]
Length = 379
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 148/383 (38%), Positives = 215/383 (56%), Gaps = 12/383 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI+ PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASIVMPEIASDHVSADGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371
>gi|291618414|ref|YP_003521156.1| YfgB [Pantoea ananatis LMG 20103]
gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103]
gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355]
Length = 389
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 162/380 (42%), Positives = 223/380 (58%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E + +G R Q+ KWIY DF+ M+DI++++R+ L
Sbjct: 21 QKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E S DGT KW +R + +ETVYIPE R TLCVSSQVGC
Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ LR+ +VPIN+KY +E + A + Y G SNA R+T EYV+L +NDS DA L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R++M
Sbjct: 361 GQLAGEVIDRTKRTLRKKMA 380
>gi|261377750|ref|ZP_05982323.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
gi|269146035|gb|EEZ72453.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
Length = 366
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 157/377 (41%), Positives = 231/377 (61%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +WI+ G ++F M+D+++ +R+ LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWIHQSGAQNFGEMTDLAKSLRYKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ SI P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQASIDIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESERGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNL+A EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NF+NV +LSI D G S+RR+T+STSG VP + ++ + + V LA+SLHA
Sbjct: 162 GMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDKLRDTMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND + A LI++
Sbjct: 222 SNDEVRNKIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S+ ++I F + ++++G+ +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSNNENIRIFIDILQQAGFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|296116218|ref|ZP_06834836.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295977324|gb|EFG84084.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 410
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 181/371 (48%), Positives = 246/371 (66%), Gaps = 14/371 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ REEL E LL+IG RT Q+W WIY +G DF MS I++ ++ L
Sbjct: 47 RRELVGLSREELTEILLEIG----EKPFRTKQLWHWIYHQGATDFSCMSSIAKPLQEKLA 102
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I P+ + S D TRK+L RF V I + RG +C+SSQVGC+
Sbjct: 103 ERFVISRPQAATVQTSSDETRKFLFRFRDGQEAETVYIPD---RREDRGAVCISSQVGCT 159
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C+FC+TGTQ LVRNL A EI+ Q + AR G++P R +S IV+M
Sbjct: 160 LSCTFCHTGTQGLVRNLGAAEIVGQFMAARDSYGEWPSPRG-------ETPRLLSTIVLM 212
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++N+ K++ I D G+ S+RRITLSTSG +P + + G+E+G+ LAISLHA
Sbjct: 213 GMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGDELGINLAISLHA 272
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V +DLR+ LVP+NRKYP+ LI ACR YP SNARRITFEY+ML+G+NDS DA L+++
Sbjct: 273 VRDDLRDELVPLNRKYPIADLIAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRL 332
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAK+NLIPFNPWPG + S ++ + F+ + +G++SPIR PRG DILAACGQL
Sbjct: 333 IAGIPAKVNLIPFNPWPGSRFQPSTREQLDRFANIVMDAGFASPIRMPRGRDILAACGQL 392
Query: 366 KSLSKRIPKVP 376
++ S+R + P
Sbjct: 393 RTESQRARRQP 403
>gi|33602154|ref|NP_889714.1| hypothetical protein BB3178 [Bordetella bronchiseptica RB50]
gi|81579923|sp|Q7WHM8|RLMN_BORBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|33576592|emb|CAE33670.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 382
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 149/383 (38%), Positives = 214/383 (55%), Gaps = 9/383 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++
Sbjct: 1 MESVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I + E+ S DGTRKWL G IETV+IPE RGTLC+SS
Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLFDV-----GQGNAIETVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+NRKYPL L+ AC Y + ITFEY ML GIND+ + A
Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL + ++ + T
Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374
>gi|167823864|ref|ZP_02455335.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
9]
gi|226197115|ref|ZP_03792692.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan
9]
gi|237812551|ref|YP_002897002.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346]
gi|225930494|gb|EEH26504.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan
9]
gi|237502725|gb|ACQ95043.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346]
Length = 378
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GNGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G + R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKV---ERVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium]
gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium]
gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium]
Length = 364
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 160/374 (42%), Positives = 216/374 (57%), Gaps = 22/374 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R LE +G R Q+ +W++ G DF M+++S+ +R L
Sbjct: 7 KTNLLGLDRPGLEGLFASLG----EKPFRAGQVLQWLHAHGCEDFAAMTNLSKALRERLA 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I P++ + ++ DGTRKWL + P G IETVYIPE RGTLCVSSQVGC
Sbjct: 63 QESQIAAPQVQADHLASDGTRKWLFQLP-----GGSAIETVYIPETRRGTLCVSSQVGCQ 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC T Q RNL +EI+ Q+ A LL P+ + I+N+V M
Sbjct: 118 LNCSFCQTARQGFNRNLGVDEIVGQIWAASRLL-----------PPHPAREKPITNVVFM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D + S RR+T+STSG VP I R+ EE V LA+SLHA
Sbjct: 167 GMGEPLLNFDNVVAAIRVMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECPVALAVSLHA 226
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR LVP+NR+YP+++L+DACR Y RRITFEY +L G+ND P A L K+
Sbjct: 227 PDDALRAELVPLNRRYPIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKALAKL 286
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L +P+K+NLIP+NP G Y S + + F + + R G + +R RG DI ACGQL
Sbjct: 287 LARVPSKVNLIPYNPVAGLPYATSPPQAVAQFRDELLRHGLVATVRKTRGDDIAGACGQL 346
Query: 366 KSLSKRIPKVPRQE 379
+P+ R
Sbjct: 347 AGQV--LPRARRNA 358
>gi|319779677|ref|YP_004130590.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
equigenitalis MCE9]
gi|317109701|gb|ADU92447.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
equigenitalis MCE9]
Length = 378
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 151/382 (39%), Positives = 216/382 (56%), Gaps = 14/382 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M L+K++LIG+ L E + K G H R Q+ WI+ +G +F M++++ +
Sbjct: 1 MTILEKQNLIGLDYTVLTELVAKWG----HKPFRAKQLMNWIHQKGESNFSNMTNLANDF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I P+ + +++S DGT KWL IETV+IPE RGTLC+SS
Sbjct: 57 RKNLAEFAEISVPKELTKQVSTDGTTKWLFDVQ-----NNNAIETVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNLT EI+ QV LAR + + R IS
Sbjct: 112 QAGCTVACRFCSTGHQGFNRNLTTSEIIGQVWLARKEI-----LNSSTDIQKLPGDRVIS 166
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V MGMGEPL N+D V ++ + D S+RR+T+STSG +P + ++ ++ V LA
Sbjct: 167 NVVFMGMGEPLLNYDQVLPAVKMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCPVALA 226
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LRN L+P+N+KYPL+ LIDAC Y + ITFEY+ML+ +ND+ A
Sbjct: 227 VSLHAPNDALRNQLIPLNKKYPLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHAN 286
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI+I + + +K+NLIPFNP+P S + + FS + +G + R RG DI A
Sbjct: 287 QLIEICREVKSKVNLIPFNPFPESGLKRSSSQRVKAFSAILNDAGIVATTRKTRGDDIDA 346
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL K K+ Q
Sbjct: 347 ACGQLAGDIKDKSKISELMKQR 368
>gi|53719145|ref|YP_108131.1| hypothetical protein BPSL1511 [Burkholderia pseudomallei K96243]
gi|53723553|ref|YP_103007.1| radical SAM protein [Burkholderia mallei ATCC 23344]
gi|67639886|ref|ZP_00438715.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4]
gi|76811596|ref|YP_333752.1| radical SAM protein [Burkholderia pseudomallei 1710b]
gi|121600638|ref|YP_993156.1| radical SAM protein [Burkholderia mallei SAVP1]
gi|124383540|ref|YP_001026069.1| radical SAM protein [Burkholderia mallei NCTC 10229]
gi|126440813|ref|YP_001059227.1| radical SAM protein [Burkholderia pseudomallei 668]
gi|126450494|ref|YP_001080663.1| radical SAM protein [Burkholderia mallei NCTC 10247]
gi|126453816|ref|YP_001066494.1| radical SAM protein [Burkholderia pseudomallei 1106a]
gi|134277659|ref|ZP_01764374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305]
gi|167002245|ref|ZP_02268035.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20]
gi|167738262|ref|ZP_02411036.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
14]
gi|167815452|ref|ZP_02447132.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
91]
gi|167845403|ref|ZP_02470911.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
B7210]
gi|167902394|ref|ZP_02489599.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
NCTC 13177]
gi|167910636|ref|ZP_02497727.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
112]
gi|217421523|ref|ZP_03453027.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576]
gi|242316984|ref|ZP_04816000.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b]
gi|254177964|ref|ZP_04884619.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399]
gi|254179549|ref|ZP_04886148.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655]
gi|254189060|ref|ZP_04895571.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur
52237]
gi|254197853|ref|ZP_04904275.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13]
gi|254199953|ref|ZP_04906319.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH]
gi|254206286|ref|ZP_04912638.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU]
gi|254259301|ref|ZP_04950355.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a]
gi|254297426|ref|ZP_04964879.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e]
gi|81379862|sp|Q63UT5|RLMN_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81604959|sp|Q62JW2|RLMN_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123744447|sp|Q3JRQ1|RLMN_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829680|sp|A3MK77|RLMN_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829681|sp|A2S2A0|RLMN_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829682|sp|A1V4K3|RLMN_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829683|sp|A3NVX3|RLMN_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829684|sp|A3NA56|RLMN_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|52209559|emb|CAH35512.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52426976|gb|AAU47569.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 23344]
gi|76581049|gb|ABA50524.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710b]
gi|121229448|gb|ABM51966.1| radical SAM enzyme, Cfr family [Burkholderia mallei SAVP1]
gi|124291560|gb|ABN00829.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10229]
gi|126220306|gb|ABN83812.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 668]
gi|126227458|gb|ABN90998.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106a]
gi|126243364|gb|ABO06457.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10247]
gi|134251309|gb|EBA51388.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305]
gi|147749549|gb|EDK56623.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH]
gi|147753729|gb|EDK60794.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU]
gi|157807225|gb|EDO84395.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e]
gi|157936739|gb|EDO92409.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur
52237]
gi|160699003|gb|EDP88973.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399]
gi|169654594|gb|EDS87287.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13]
gi|184210089|gb|EDU07132.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655]
gi|217395265|gb|EEC35283.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576]
gi|238520497|gb|EEP83956.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4]
gi|242140223|gb|EES26625.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b]
gi|243062062|gb|EES44248.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20]
gi|254217990|gb|EET07374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a]
Length = 378
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GNGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
Length = 367
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 157/382 (41%), Positives = 212/382 (55%), Gaps = 28/382 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+ + +++G R Q+ KWIY G DF M+++++ ++ L
Sbjct: 5 KINLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMTNVNKVLKERLK 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PEI E+ S DGT KW L+ E+ETVYIPE R TLCVSSQVGC+
Sbjct: 61 AIAEIKAPEISREQRSADGTIKWALQVGD------QEVETVYIPEDDRATLCVSSQVGCA 114
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAARVVG---------------GKRPITNVVMM 159
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ + D G SKRR+T+STSG VP + ++G++I V LAISLHA
Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKLGDQIDVALAISLHA 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
++ LR+ ++PIN KY +E + R Y SN R+T EYV+L IND + A L
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 279
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI AACG
Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339
Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
QL R + + MQ G
Sbjct: 340 QLVGDVIDRTKRTIKNRMQQDG 361
>gi|167581703|ref|ZP_02374577.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
TXDOH]
Length = 378
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 148/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGGLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GNGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P L S + I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|33597413|ref|NP_885056.1| hypothetical protein BPP2857 [Bordetella parapertussis 12822]
gi|81579190|sp|Q7W6P5|RLMN_BORPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|33573840|emb|CAE38149.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 382
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 9/383 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++
Sbjct: 1 MESVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I + E+ S DGTRKWL G IETV+IPE RGTLC+SS
Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLFDV-----GQGNAIETVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ + LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPLALA 231
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+NRKYPL L+ AC Y + ITFEY ML GIND+ + A
Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL + ++ + T
Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374
>gi|117619957|ref|YP_856292.1| hypothetical protein AHA_1756 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|205829708|sp|A0KJ41|RLMN_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 367
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 159/382 (41%), Positives = 214/382 (56%), Gaps = 28/382 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+ + +++G R Q+ KWIY G DF M+++++ +R L
Sbjct: 5 KTNLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMNNVNKVLRERLK 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+ E+ S DGT KW L+ G E+ETVYIPE+ R TLCVSSQVGC+
Sbjct: 61 AIAEIRAPEVSREQRSSDGTIKWALQV------GGQEVETVYIPEEDRATLCVSSQVGCA 114
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVG---------------GKRPITNVVMM 159
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ + D G SKRR+T+STSG VP + +G++I V LAISLHA
Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDMLGDQIDVALAISLHA 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
++ LR+ ++PIN KY +E + R Y G SN R+T EYV+L IND + A L
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELA 279
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI AACG
Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339
Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
QL R + + MQ G
Sbjct: 340 QLVGEVIDRTKRTMKNRMQQDG 361
>gi|33593205|ref|NP_880849.1| hypothetical protein BP2201 [Bordetella pertussis Tohama I]
gi|81578506|sp|Q7VWK8|RLMN_BORPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|33563580|emb|CAE42479.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332382616|gb|AEE67463.1| hypothetical protein BPTD_2167 [Bordetella pertussis CS]
Length = 382
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 9/383 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++
Sbjct: 1 MEAVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I + E+ S DGTRKWL G IETV+IPE RGTLC+SS
Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLFDV-----GQGNAIETVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL L+ AC Y + ITFEY ML GIND+ + A
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL + ++ + T
Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374
>gi|114327110|ref|YP_744267.1| radical SAM protein [Granulibacter bethesdensis CGDNIH1]
gi|122327908|sp|Q0BV08|RLMN_GRABC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|114315284|gb|ABI61344.1| radical SAM family enzyme [Granulibacter bethesdensis CGDNIH1]
Length = 397
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 186/370 (50%), Positives = 248/370 (67%), Gaps = 14/370 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++ L+G+ RE+L EAL +IG P R Q+W WIY RG DF+ MS I++ + L
Sbjct: 41 RKDLVGLSREQLTEALAEIGFPA----FRAKQLWHWIYHRGETDFRVMSSIAKPQQETLA 96
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I P + + S D TRKWL RF V I P + RG +C+SSQVGC+
Sbjct: 97 ERFVISRPAVTECLTSVDETRKWLFRFRDGQEAETVYIPD---PVEDRGAVCISSQVGCT 153
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C FC+TGTQ LVRNL EI+ Q + AR G++P + R +S IV+M
Sbjct: 154 LSCRFCHTGTQPLVRNLGPAEIVGQFMAARDAYGEWPSPKG-------ETPRLLSTIVLM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++NVK+++ I D G++ S+RRITLSTSG VP + R G E+ V LAISLHA
Sbjct: 207 GMGEPLYNYENVKQAMRIVMDGDGIALSRRRITLSTSGVVPMMDRCGTELAVNLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+++LR+ LVP+NRKYP+ LI ACR YP SNARRITFEY+ML GINDS +A L+++
Sbjct: 267 VTDELRDELVPLNRKYPIRELIAACRRYPAASNARRITFEYIMLDGINDSEAEARELVRL 326
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAK+NLIPFNPWPG +Y S K + FS + +G++SPIRTPRG DILAACGQL
Sbjct: 327 IAGIPAKVNLIPFNPWPGSQYTPSRPKALERFSRIVMEAGFASPIRTPRGRDILAACGQL 386
Query: 366 KSLSKRIPKV 375
++ S++ ++
Sbjct: 387 RTESRKERRI 396
>gi|239826567|ref|YP_002949191.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
WCH70]
gi|239806860|gb|ACS23925.1| radical SAM enzyme, Cfr family [Geobacillus sp. WCH70]
Length = 364
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 128/368 (34%), Positives = 205/368 (55%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + E+L++ +++ G R +QI++W+Y + DF M+++ + +R L++
Sbjct: 19 PSIYSLTFEQLKDWIIEQG----EKPFRATQIYEWLYQKRATDFSEMTNLPKTLREKLSE 74
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF I + + ++ S DGT K+L IETV + ++CV++QVGC +
Sbjct: 75 HFDITTLKTLVKQTSKDGTIKFLFELH-----DGYSIETVLMRHNYGNSICVTTQVGCRI 129
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A EI+ QV+ + L + G ++S+IV+MG
Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKALDE--------------QGERVSSIVVMG 175
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP N+D + K L I + S GL+ R IT+STSG +P I + +E + V AISLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR L+PIN+ YPL L+DA R+Y + RR+TFEY + G+ND A L ++
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKT-GRRVTFEYGLFGGVNDQIEHAEQLAEL 294
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL
Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPRDQIFAFERALKKHGINVTIRREHGHDIDAACGQL 354
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 355 RAKERKEE 362
>gi|115351803|ref|YP_773642.1| radical SAM protein [Burkholderia ambifaria AMMD]
gi|122323090|sp|Q0BEW5|RLMN_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|115281791|gb|ABI87308.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia ambifaria AMMD]
Length = 379
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 148/383 (38%), Positives = 215/383 (56%), Gaps = 12/383 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI+ PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASIVMPEIASDHVSTDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371
>gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae]
Length = 389
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 160/378 (42%), Positives = 218/378 (57%), Gaps = 23/378 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ M R+++ + G R Q+ KWIY DF M+DI++ +R+ L
Sbjct: 22 KVNLLDMDRKQMRQFFSDTG----EKPFRADQVMKWIYHHCYDDFDLMTDINKVLRNKLK 77
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I PEI E+ S DGT KW + G ++ETVYIPE R TLCVSSQVGC+
Sbjct: 78 QAAEIRAPEIAQEQRSTDGTIKWAITV------GEQQVETVYIPEDDRATLCVSSQVGCA 131
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 132 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKVIGSLKSSGR----------RPITNVVMM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 182 GMGEPLLNLNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 241
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + + R Y SNA R+T EYVML G+NDS A L
Sbjct: 242 PTDEIRDEIVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQLA 301
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P+KINLIP+NP+PG Y S I F++ + + G+++ +R RG DI AACG
Sbjct: 302 ECLKHTPSKINLIPWNPFPGAPYSRSSNSRIDRFAKVLMKYGFTTIVRKTRGDDIDAACG 361
Query: 364 QLKSLS-KRIPKVPRQEM 380
QL R + ++ +
Sbjct: 362 QLAGDVIDRTKRTLKKRL 379
>gi|83720408|ref|YP_442753.1| radical SAM protein [Burkholderia thailandensis E264]
gi|167619819|ref|ZP_02388450.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
Bt4]
gi|123753780|sp|Q2SWE6|RLMN_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|83654233|gb|ABC38296.1| radical SAM enzyme, Cfr family [Burkholderia thailandensis E264]
Length = 378
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 148/372 (39%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L
Sbjct: 7 VNLLDLDAEGLVAYCGGLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+I+ + +S DGTRKWL+ G +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLINV-----GNGNAVETVFIPEETRGTLCVSSQAGCAV 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ +
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P L S + I F++ + +G + IR RG DI AACGQL
Sbjct: 295 RDVPCKFNLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQ 378
K ++ +
Sbjct: 355 GAVKDRTRLAER 366
>gi|167587047|ref|ZP_02379435.1| radical SAM enzyme, Cfr family protein [Burkholderia ubonensis Bu]
Length = 379
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 216/378 (57%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI+ P+IV + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASIVMPDIVSDHVSTDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR++LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDMLVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
Length = 398
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 218/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E K+G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+
Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMDYGFTTIVRKTRGDDIDAACG 370
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKMA 389
>gi|240115903|ref|ZP_04729965.1| hypothetical protein NgonPID1_06609 [Neisseria gonorrhoeae PID18]
gi|260440282|ref|ZP_05794098.1| hypothetical protein NgonDG_04176 [Neisseria gonorrhoeae DGI2]
gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
Length = 364
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN
Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ SI P+++ + S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+
Sbjct: 58 EQASIEIPKLMMSQESSDGTRKWLLDV-----GTGNGVETVFIPESDRGTLCISSQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP+ NFDNV +LSI + G S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLNDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND + A LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K +P K NLIPFNP+P Y S ++I F + ++++ + +R RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341
Query: 366 KSLSKRIPKVPRQEMQI 382
+ + ++ QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358
>gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
Length = 374
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 150/382 (39%), Positives = 212/382 (55%), Gaps = 25/382 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + + + ++G R R +Q+++WI+ RG DF MSD+++ +R L
Sbjct: 3 TNLLDLDLDAMAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKG 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + + E S DGT KWL GG +ETV+IPE RGTLC+SSQ GC++
Sbjct: 59 CAHVSGLQAISEHASADGTVKWLFDV-----GGGNAVETVFIPEDDRGTLCISSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNLT EI+ Q+ A +L G R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRG----------DGERVISNVVMMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L I D G S+RR+T+STSG VP + R+G + V LA+SLHA
Sbjct: 164 MGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAP 223
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++LR+ LVP+NRKYPL+ L+ ACR Y + ITFEY ML G+ND P A LI ++
Sbjct: 224 NDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALV 283
Query: 307 KG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ K NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 284 SRKAADGGVSCKFNLIPFNPFPASGLRRSPAVAVSAFAKLLSDAGIVTTVRKTRGDDIDA 343
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL K +V + ++
Sbjct: 344 ACGQLAGDVKDRTRVGERMARL 365
>gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
Length = 411
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 167/382 (43%), Positives = 224/382 (58%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L
Sbjct: 29 NKVNLLGMSRPELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS
Sbjct: 85 EQICEIKAPEVVHRHYSKDGTRKWVFRV---GEGAGSLVETVLIPAEDKTGLRKTLCISS 141
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + + R ++
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYME--------EVPVAERERSVT 193
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373
Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 374 DIDAACGQLVGQVADRTRRAEQ 395
>gi|157374568|ref|YP_001473168.1| hypothetical protein Ssed_1429 [Shewanella sediminis HAW-EB3]
gi|205829886|sp|A8FT67|RLMN_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3]
Length = 373
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ L ++G R Q+ KWIY G DF M++I++ +R L
Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGETDFDAMNNINKVLRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ ++ PEI + S DGT K+ + G E+ETVYIPE+ R TLCVSSQVGC
Sbjct: 60 SARCEVVAPEISSYQKSADGTIKFAINV-----GQGQEVETVYIPEEDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV + +G + R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVANFIG----------FQKETGERPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR++LVP+N+KYPLE + R Y SN R+T EYVML INDS A L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344
Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
GQL +KR+ K Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369
>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
Length = 381
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 157/382 (41%), Positives = 216/382 (56%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ +L+GM R +LE+ L +G R R Q+ KW++ +G DF MS++ + +R L
Sbjct: 12 ERINLLGMSRTQLEDFFLGLG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRERL 67
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ P + + S DGTRKWL+R G +ETV IP+ +R TLCVSSQVGC
Sbjct: 68 AAIAEVRPPPVESQHDSSDGTRKWLVRV-----DGGGLVETVLIPDGNRATLCVSSQVGC 122
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q R+L+A EI+ QV LA + F GR ++N+VM
Sbjct: 123 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFKSGN----------GRVVTNVVM 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP + ++ E LA+SLH
Sbjct: 173 MGMGEPLLNFDNVVTAMDLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLH 232
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP--GLSNARRITFEYVMLKGINDSPRDALNL 302
A +++LRN LVP+NR+YP+ L+D+ R Y R +T EY ++ G+ND P A L
Sbjct: 233 APNDELRNQLVPVNRRYPIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQAREL 292
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L P KINLIPFNP+P Y + F + + +G+ +RT RG DI AAC
Sbjct: 293 ATLLADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAAC 352
Query: 363 GQLKSL-SKRIPKVPRQEMQIT 383
GQL R + R
Sbjct: 353 GQLVGDVVDRTRRSARHRQNAE 374
>gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
Length = 378
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 162/382 (42%), Positives = 221/382 (57%), Gaps = 23/382 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R++L +++G R Q+ KWIY DF+ MSDI++ +R L
Sbjct: 10 KVNLLDLNRQQLRHFFIEMG----EKPFRADQVMKWIYHYCYDDFEQMSDINKVLRTKLQ 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+
Sbjct: 66 QIAEIRAPEVAQEQRSADGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 119
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 120 LECTFCSTAQQGFSRNLRVAEIIGQVWRAAKIIGSLKSSGR----------RPITNVVMM 169
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 170 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 229
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPINRKY ++ + A R Y SNA R+T EYVML INDSP A L
Sbjct: 230 PTDEIRDEIVPINRKYNIDTFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSPEQAHQLA 289
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P KINLIP+NP+PG Y S + FS+ + + G+++ +R RG DI AACG
Sbjct: 290 ECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLIQYGFTTIVRKTRGDDIDAACG 349
Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
QL R + ++ + G
Sbjct: 350 QLAGEVIDRTKRTLKKRIAKEG 371
>gi|254292458|ref|YP_003058481.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814]
gi|254040989|gb|ACT57784.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814]
Length = 390
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 195/378 (51%), Positives = 267/378 (70%), Gaps = 15/378 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L G+ +L E + +IGI ++ +MR +Q+ W++ G+ DF M++I++++R L +
Sbjct: 20 VNLSGLSLVKLRERMEEIGIDKKKAKMRANQVSHWMHNFGVTDFDDMTNIAKDMRAKLVE 79
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
+ I P+I + K+S DGT+KWL RF G +E E+V+IP+ +R G LCVSSQVGC+
Sbjct: 80 NHIIARPDITEHKVSVDGTQKWLSRF-----GPGIEAESVFIPDVARSGALCVSSQVGCT 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C+FC+TGTQK+VRNLTA+EI+ QVL+AR LG++P PS RK++NIV M
Sbjct: 135 LSCTFCHTGTQKMVRNLTAQEIVAQVLVARDTLGEWPT---------PSENRKLTNIVFM 185
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N DNV +++ SD G+S +RRIT+ST+G P I +G MLAISLHA
Sbjct: 186 GMGEPLYNLDNVVEAIDTISDCEGISIGRRRITVSTAGVAPKIPELGARTNAMLAISLHA 245
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++DLR+ +VPIN+KY LE L DA R YP L N++R+TFEYVMLK +NDS +A++LIK+
Sbjct: 246 TNDDLRDEIVPINKKYNLECLFDAIRSYPDLGNSKRVTFEYVMLKDVNDSLAEAVDLIKL 305
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+PAKINLIPFNPWPG Y CSD I TF+E + R+G S+PIRTPRG DI AACGQL
Sbjct: 306 LKGLPAKINLIPFNPWPGSPYECSDWDKIETFAEVLNRAGLSAPIRTPRGRDIFAACGQL 365
Query: 366 KSLSKRIPKVPRQEMQIT 383
+S S + R + +I
Sbjct: 366 RSESIKERASDRLKAKIA 383
>gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
Length = 380
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 157/381 (41%), Positives = 214/381 (56%), Gaps = 22/381 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+GM R ++E +G R R Q+ KWI+ G+ D + M+ + + +R L+
Sbjct: 16 KVNLLGMSRAQMEVFFTDLG----EKRFRAGQVMKWIHHHGVSDIEAMTTLGKALRERLS 71
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PEI D+K S DGTRKW +R G +E V IPE SR TLCVSSQVGCS
Sbjct: 72 SIAEVRPPEIADQKDSADGTRKWAIRV-----DGGALVEAVLIPEGSRATLCVSSQVGCS 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC TG Q R+LT+ EI+ QV LA F + GR ++N+VMM
Sbjct: 127 LDCKFCSTGKQGFQRDLTSAEIIGQVWLAIKSYDAFQSGK----------GRVVTNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV S+S+ +D SKRR+TLSTSG VP + ++ E V LAISLH
Sbjct: 177 GMGEPLLNFDNVVSSMSLMTDDWAYGLSKRRVTLSTSGVVPALDKLAECSDVSLAISLHG 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP--GLSNARRITFEYVMLKGINDSPRDALNLI 303
++++RN +VPIN++YP+ L+ + R+Y R +T EY +L G+ND A L
Sbjct: 237 PTDEIRNRIVPINKRYPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK P KINLIPFN +P + + F + + +GY +RT RG DI AACG
Sbjct: 297 VLLKDFPCKINLIPFNDFPHSGFTRPSGNAVSRFWQVLIDAGYVVTVRTTRGDDIDAACG 356
Query: 364 QLKSL-SKRIPKVPRQEMQIT 383
QL R + R ++
Sbjct: 357 QLVGEVVDRTRRAQRHRSRLE 377
>gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
Length = 381
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 156/383 (40%), Positives = 215/383 (56%), Gaps = 22/383 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K +L GM R +LE L++G R R Q+ KW++ +G DF MS++ + +R
Sbjct: 11 VEKVNLFGMSRTQLEAFFLEMG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRER 66
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ + P + + S DGTRKWL+ G +ETV IP+ +R TLCVSSQVG
Sbjct: 67 LSAIAEVRPPVVESQHDSSDGTRKWLVHV-----DGGGLVETVLIPDGNRATLCVSSQVG 121
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL CSFC TG Q R+L+A EI+ QV LA F GR ++N+V
Sbjct: 122 CSLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSGN----------GRVVTNVV 171
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL NFDNV ++++ D +G SKRR+TLSTSG VP + ++ E LA+SL
Sbjct: 172 MMGMGEPLLNFDNVVTAMNLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYP--GLSNARRITFEYVMLKGINDSPRDALN 301
HA +++LRN LVP+NR+YP+ L+ + + Y R +T EY ++ GIND P A
Sbjct: 232 HAPNDELRNQLVPVNRRYPIAQLLASAQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARE 291
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L P KINLIPFNP+P Y + F + + +G+ +RT RG DI AA
Sbjct: 292 LALLLADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAA 351
Query: 362 CGQLKSL-SKRIPKVPRQEMQIT 383
CGQL R + R
Sbjct: 352 CGQLVGEVVDRTRRSARHRQNAE 374
>gi|145299533|ref|YP_001142374.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
salmonicida subsp. salmonicida A449]
gi|205829709|sp|A4SP04|RLMN_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|142852305|gb|ABO90626.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 368
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 159/387 (41%), Positives = 214/387 (55%), Gaps = 30/387 (7%)
Query: 3 FLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ K +L+ + R+ + +++G R QI KWIY G DF M+++++ +
Sbjct: 1 MMSEIKTNLLDLDRDAMRAFFVELG----EKPFRADQIMKWIYHFGCDDFDQMNNVNKVL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I PE+ E+ S DGT KW L+ G E+ETVYIPE+ R TLCVSS
Sbjct: 57 RERLKAIAEIRAPEVSREQRSSDGTIKWALQV------GGQEVETVYIPEEDRATLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C FC T Q RNL EI+ QV A ++G R I+
Sbjct: 111 QVGCALACKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVG---------------GKRPIT 155
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N NV ++ + D G SKRR+T+STSG VP + +G++I V LA
Sbjct: 156 NVVMMGMGEPLLNLANVIPAMRLMMDDFGYGISKRRVTISTSGVVPALDILGDQIDVALA 215
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298
ISLHA ++ LR+ ++PIN KY +E + R Y SN R+T EYV+L IND +
Sbjct: 216 ISLHAPNDKLRSEIMPINDKYNIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQH 275
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI
Sbjct: 276 AHELAKVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDI 335
Query: 359 LAACGQLKSLS-KRIPKVPRQEMQITG 384
AACGQL R + + MQ G
Sbjct: 336 DAACGQLVGEVIDRTKRTMKNRMQQDG 362
>gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
Length = 398
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 221/379 (58%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E K+G R Q+ KWIY DF+ M+DI++ +R+ L
Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWIYHYCCDDFEQMTDINKVLRNKLQ 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+ +E+ S DGT KW + ++ETV+IP+ R TLCVSSQVGC+
Sbjct: 87 SVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVFIPDGDRATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKVTGERPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS DA L
Sbjct: 251 PNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKMA 389
>gi|107029007|ref|YP_626102.1| hypothetical protein Bcen_6265 [Burkholderia cenocepacia AU 1054]
gi|116689835|ref|YP_835458.1| radical SAM protein [Burkholderia cenocepacia HI2424]
gi|170733174|ref|YP_001765121.1| radical SAM protein [Burkholderia cenocepacia MC0-3]
gi|123179922|sp|Q1BGX6|RLMN_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829678|sp|B1JT94|RLMN_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829679|sp|A0K7T8|RLMN_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|105898171|gb|ABF81129.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia AU
1054]
gi|116647924|gb|ABK08565.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia
HI2424]
gi|169816416|gb|ACA90999.1| radical SAM enzyme, Cfr family [Burkholderia cenocepacia MC0-3]
Length = 379
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI+ P+I + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASIVMPDIASDHVSTDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|145589473|ref|YP_001156070.1| radical SAM protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|205829801|sp|A4SYE2|RLMN_POLSQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145047879|gb|ABP34506.1| 23S rRNA m(2)A-2503 methyltransferase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 402
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 148/382 (38%), Positives = 216/382 (56%), Gaps = 13/382 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+ +++ + + R Q+ +WI+ RG+ D MSD+++ R L
Sbjct: 5 RVNLLDFDADQMAAYVAGL----NEKPFRAKQLMQWIHQRGVSDINDMSDLAKSFRATLL 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ ++ ++ + DGTRKWLL G +E+V+IPE RGTLC+SSQ GC+
Sbjct: 61 DKVEVLSLPVIKDEHATDGTRKWLLDV-----GAGNAVESVFIPEDDRGTLCISSQAGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC----EDIEGMVIPSVGRKISN 181
+ C FC TG Q RNLT+ EI+ Q+ A LL + P E GR ISN
Sbjct: 116 VNCRFCSTGRQGFSRNLTSGEIIGQLWFAEHLLRNDPEAIRRIEKYPTPGWEHTGRVISN 175
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N+DNV +L + D S+RR+T+STSG VP I R+ ++ V LA+
Sbjct: 176 VVMMGMGEPLLNYDNVVSALRLMLDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAV 235
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++ LR+ LVP+N+KYPL L+DAC Y + +TFEY ML G+NDS A
Sbjct: 236 SLHAPNDALRDQLVPLNQKYPLRELLDACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKE 295
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++L+ I KINLIPFNP+P S + + F+ + +G + +R RG DI AA
Sbjct: 296 LVRLLRNIKCKINLIPFNPFPESGLKRSSAQRVNAFAGILLDAGMVATVRKTRGDDIAAA 355
Query: 362 CGQLKSLSKRIPKVPRQEMQIT 383
CGQL +V +++
Sbjct: 356 CGQLAGDVVDRTRVRERDIHSA 377
>gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
FL6-60]
Length = 411
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 162/382 (42%), Positives = 214/382 (56%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E +++G R QI KWIY DF M+DI++ +R L
Sbjct: 43 EKINLLDLDRKQMREFFIQMG----EKPFRADQIMKWIYHYCCDDFDVMTDINKVLRAKL 98
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW L+ +ETVYIPE R TLCVSSQVGC
Sbjct: 99 KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 152
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 202
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 203 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ +R+ +VPINRKY ++M + + R Y SNA R+T EYVML IND A L
Sbjct: 263 APNDAIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 322
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC
Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL K + Q G
Sbjct: 383 GQLAGEVIDRTK-RTLKKQAAG 403
>gi|170703874|ref|ZP_02894562.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10]
gi|171321348|ref|ZP_02910305.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5]
gi|170131219|gb|EDS99858.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10]
gi|171093366|gb|EDT38556.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5]
Length = 379
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 12/383 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI+ PEI + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASIVMPEIASDHVSTDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371
>gi|308187773|ref|YP_003931904.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
Length = 389
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 163/380 (42%), Positives = 223/380 (58%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E L +G R Q+ KWIY DF+ M+DI++++R+ L
Sbjct: 21 QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E S DGT KW +R + +ETVYIPE R TLCVSSQVGC
Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKITGQRPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ LR+ +VPIN+KY +E + A + Y G SNA R+T EYV+L +NDS DA L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R++M
Sbjct: 361 GQLAGEVIDRTKRTLRKKMA 380
>gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
Length = 379
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 154/371 (41%), Positives = 214/371 (57%), Gaps = 16/371 (4%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L+ EL + +G R Q+ KWI+ G+ +F M+D+++ R LN
Sbjct: 7 NLLDYSVPELIQWCGNLG----EKPFRAKQLAKWIHQSGMDNFDSMTDLAKSFRQNLNSR 62
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I P I+ + +S DGTRKWL G +ETV+IPE+ RGTLCVSSQ GC++
Sbjct: 63 ACIKAPSIISDNVSKDGTRKWLFDV-----GNGDAVETVFIPEERRGTLCVSSQAGCAVN 117
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG Q RNL+ EI+ Q+ A LL + G + + R ++N+VMMGM
Sbjct: 118 CRFCSTGKQGFSRNLSTAEIVAQLWKANVLLRE-------AGDRVYAQERPVTNVVMMGM 170
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N+D + +L + D S+RR+T+STSG VP + R+ ++ V LA+SLHA +
Sbjct: 171 GEPLLNYDALVPALQLMLDDTAYGLSRRRVTVSTSGVVPFMDRLSQDCPVALAVSLHAPN 230
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ LR+ LVP+N+KYPL L+DAC Y + ITFEYVML G+ND P A L++I K
Sbjct: 231 DALRDHLVPLNKKYPLRELLDACLRYLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAK 290
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
+P K NLIPFNP+P L S I TF + + +G + +R RG DI AACGQL
Sbjct: 291 IVPCKFNLIPFNPFPESGLLKSTSPAIKTFVDILGGAGVVTTVRKTRGDDIDAACGQLAG 350
Query: 368 LSKRIPKVPRQ 378
+ KV +
Sbjct: 351 EVRDRTKVKER 361
>gi|119944920|ref|YP_942600.1| hypothetical protein Ping_1165 [Psychromonas ingrahamii 37]
gi|205829827|sp|A1SU36|RLMN_PSYIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|119863524|gb|ABM03001.1| radical SAM enzyme, Cfr family protein [Psychromonas ingrahamii 37]
Length = 372
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 154/384 (40%), Positives = 218/384 (56%), Gaps = 24/384 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +KK +L+ + RE L +++G R Q+ KWIY G DF MS++++++
Sbjct: 1 MN-IKKVNLLDLNREGLRAFFVELG----EKPFRAEQVMKWIYHYGCEDFDLMSNVNKKL 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I+ PEI E+ S DGT KW + E+ETVYIPEK R TLC+SS
Sbjct: 56 RQKLKECAEIVAPEIKVEQRSNDGTIKWAMTVGD------QEVETVYIPEKDRATLCISS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC L C+FC T Q RNL+ EI+ QV A ++G + S R I+
Sbjct: 110 QVGCVLACNFCSTAQQGFNRNLSVSEIIGQVWRAAKIVG----------VTGESGKRPIT 159
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N +N+ ++ + D G + SKRR+T+STSG VP + +G+ I V LA
Sbjct: 160 NVVMMGMGEPLLNLNNLIPAMELMLDDFGYALSKRRVTVSTSGVVPALDILGDRIDVSLA 219
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRD 298
ISLHA ++ LR+ ++PIN KY + + + Y S N ++ EY++L NDS
Sbjct: 220 ISLHAANDTLRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVYIEYLLLDHFNDSTDQ 279
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L +LK P KINLIPFNP+PG +Y + F++ + GY+ +R RG DI
Sbjct: 280 AHELAILLKDTPCKINLIPFNPFPGNDYQKPSNSRVDRFNKVLMEYGYTVTVRKTRGDDI 339
Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
AACGQL R + ++ +Q
Sbjct: 340 DAACGQLVGDVIDRTKRTMKKRLQ 363
>gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT]
gi|123078840|sp|Q1H0U6|RLMN_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus
KT]
Length = 362
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 159/377 (42%), Positives = 219/377 (58%), Gaps = 20/377 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + L E IG R Q+ +W++ G+ DF M+DI++ +R L +
Sbjct: 3 VNLLNFNQAALAEYFQGIG----EKPFRAKQMMRWMHHFGVSDFGEMTDIAKALREKLAK 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ P + E+IS DGTRKWL+ G +ETV+IPE RGTLCVSSQVGC+L
Sbjct: 59 EAVVAPPSVHLEQISEDGTRKWLIDV-----GAGNGVETVFIPEDDRGTLCVSSQVGCAL 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNL+ EI+ Q+ +A LG P R ISN+VMMG
Sbjct: 114 DCTFCSTGRQGFNRNLSVSEIIGQLWVANKALGRDPKG-----------DRIISNVVMMG 162
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDNV +++I D S+RR+TLSTSG VP + R+ EE V LA+SLHA
Sbjct: 163 MGEPLANFDNVVAAMNIMLDDSAYGLSRRRVTLSTSGMVPAMDRLREECPVALAVSLHAP 222
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ +VPINRKYP+ L+ AC+ Y + +TFEYVML G+ND+ A L+ I+
Sbjct: 223 NDALRDEIVPINRKYPIAQLMAACQRYLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIV 282
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P Y S +I F + + ++GY R RG DI AACGQL
Sbjct: 283 QDVPCKFNLIPFNPFPNSGYDTSKPDNIRRFRDILMQAGYVVTTRKTRGEDIDAACGQLA 342
Query: 367 SLSKRIPKVPRQEMQIT 383
+ K + +++
Sbjct: 343 GKVQDKTKRSLRRIKVE 359
>gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans
2-40]
gi|123090598|sp|Q21KT6|RLMN_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans
2-40]
Length = 398
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 167/378 (44%), Positives = 227/378 (60%), Gaps = 22/378 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + +LE +G R R +Q+ KWI+ G+ DF+ M++IS+ +R L+
Sbjct: 11 KVNLMGLSQAKLEAFFDSLG----EKRFRATQVLKWIHQMGVTDFEQMTNISKPLRDKLS 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q + PE+V++ S DGTRK+L+R GG +ETVYIP+ RGTLCVSSQVGCS
Sbjct: 67 QVAEAVAPEVVNQWDSSDGTRKFLIRV-----GGGNAVETVYIPDGDRGTLCVSSQVGCS 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LTA EI+ QV A F RKI+N+VMM
Sbjct: 122 LDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQFGVGA----------QRKITNVVMM 171
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV S+++ SKRR+TLSTSG VP + ++GE LAISLHA
Sbjct: 172 GMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEYTDACLAISLHA 231
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+N LRN LVPIN+KYP+EML+ + + Y R++T EY ++ +ND P A L
Sbjct: 232 PNNALRNELVPINKKYPIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDRPEHAHELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK IP KINLIPFNP+ Y + F + + +GY++ +RT RG DI AACG
Sbjct: 292 ELLKDIPVKINLIPFNPFNLSNYKRVSNNALRRFQQILIDAGYTTTVRTTRGDDIDAACG 351
Query: 364 QLKSL-SKRIPKVPRQEM 380
QL + R + R ++
Sbjct: 352 QLAGQVNDRTKRSQRYKI 369
>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
gi|205829658|sp|A1TM24|RLMN_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
Length = 373
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 149/383 (38%), Positives = 212/383 (55%), Gaps = 25/383 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + L ++G R R Q+++WI+ RG DF MSD+++ +R L+
Sbjct: 3 KNLLDFDLDGLAAFCEQLG----EKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSG 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ ++ E +S DGT KWL G +E+V+IPE RGTLC+SSQ GC++
Sbjct: 59 CAHVAALPVISEHVSADGTVKWLFDV-----GDGNAVESVFIPEDDRGTLCISSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNLT+ EI+ Q+ A L G ++ R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQE----------RVISNVVMMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L D G S+RR+T+STSG VP + R+ ++ V +A+SLHA
Sbjct: 164 MGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAP 223
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+NRKYPL L+DAC Y + ITFEY ML G+ND P A LI ++
Sbjct: 224 NDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLV 283
Query: 307 KGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K NLIPFNP+P S+ + + F++ + +G + +R RG DI AA
Sbjct: 284 RPRGGEGVRCKFNLIPFNPFPASGLHRSNPQQVAAFAKMLSDAGIVTTVRKTRGDDIDAA 343
Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383
CGQL K R R Q T
Sbjct: 344 CGQLAGDVKDRTRAAERMARQRT 366
>gi|311105357|ref|YP_003978210.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
gi|310760046|gb|ADP15495.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
Length = 384
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 154/384 (40%), Positives = 216/384 (56%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +++ +L+G+ L E + K G R Q+ +W++ RG F M+D++++
Sbjct: 1 METVERINLLGLDGSALSELVGKWG----GKPFRARQLQRWMHQRGADSFDAMTDLARDF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L QH I + E+ S DGTRKWL G IETV+IPE RGTLC+SS
Sbjct: 57 RGQLAQHCRIEALPVNIEQRSTDGTRKWLFDV-----GQGNAIETVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC TG Q RNL EI+ Q+ A+ +L G +E R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVIS 171
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAK 291
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI+I + + K+NLIPFNP+P S+ + F++ + +G + +R RG DI A
Sbjct: 292 ELIQIARQLRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351
Query: 361 ACGQLKSLSK-RIPKVPRQEMQIT 383
ACGQL + R R Q
Sbjct: 352 ACGQLAGEVRDRTRITERNAAQRQ 375
>gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia
proteamaculans 568]
gi|205829876|sp|A8GHW8|RLMN_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568]
Length = 398
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 161/379 (42%), Positives = 222/379 (58%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R++L E K+G R Q+ KW+Y DF+ M+DI++ +R+ L
Sbjct: 31 KINLLDLNRQQLREFFAKMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQ 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+ +E+ S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 87 SVAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPDGDRATLCVSSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKVTGERPITNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS DA L
Sbjct: 251 PNDKIRDDIVPINRKYNIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKMA 389
>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
gi|123050394|sp|Q0VND7|RLMN_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
borkumensis SK2]
Length = 381
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 160/385 (41%), Positives = 227/385 (58%), Gaps = 22/385 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +K +L+G+ R ++EE L +G + R Q+ KWI+ F+ M+D+ + +
Sbjct: 1 MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L++ I P++ E IS DGTRKW+ + +ETV+IP+ RGTLCVSS
Sbjct: 57 RQKLSEVAEIRGPKVTHESISRDGTRKWVFE-----MDNGGAVETVFIPDGRRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ CSFC TG Q R++T+ EI+ QV A G I+
Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFG----------PRRNLGQHPIT 161
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ I D +G K+RIT+STSG +P + ++ E++ V LA
Sbjct: 162 NVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLA 221
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRD 298
+SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y IT EYVML+ +ND P
Sbjct: 222 VSLHAPNDELRNQLVPLNRKYPLKDLMAACKRYSKNITHRHNTITMEYVMLRDVNDKPEH 281
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+K+L GIP K+NLIPFNP+P Y S + DI+ F + + +G + +RT RG DI
Sbjct: 282 ARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDI 341
Query: 359 LAACGQLKSLSK-RIPKVPRQEMQI 382
AACGQL K R + R + I
Sbjct: 342 DAACGQLVGQVKDRTRRSERWKESI 366
>gi|293604539|ref|ZP_06686944.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
gi|292817120|gb|EFF76196.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
Length = 384
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 152/384 (39%), Positives = 215/384 (55%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D+++E
Sbjct: 1 MESVERINLLGLDGSALSELVGQWG----GKPFRARQLQRWMHQRGADSFDAMTDLAREF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I + E+ S DGTRKWL G IETV+IPE RGTLC+SS
Sbjct: 57 RSQLASNCRIEALPVNIEQRSADGTRKWLFDV-----GQGNAIETVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC TG Q RNL EI+ Q+ A+ +L G +E R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESAKATEDTRVIS 171
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAK 291
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI+I + + K+NLIPFNP+P S+ + F++ + +G + +R RG DI A
Sbjct: 292 ELIQIARQLRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351
Query: 361 ACGQLKSLSK-RIPKVPRQEMQIT 383
ACGQL + R R Q
Sbjct: 352 ACGQLAGEVRDRTRITERNAAQRQ 375
>gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
Length = 403
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 156/381 (40%), Positives = 220/381 (57%), Gaps = 16/381 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +++GM +E+L + +IG R +Q+ KWIY G+ DF M+++S+ +R L+
Sbjct: 25 KTNILGMSQEQLGDYFKQIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGLREKLS 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + PE+V ++ S DGTRKW+ + + V I R TLC+SSQVGC+
Sbjct: 81 EKACVETPEVVHKEFSEDGTRKWVFKVAGGSLVETVLIPADDSKVNGRKTLCISSQVGCA 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LTA EI+ Q+ +A +EG+ ++N+VMM
Sbjct: 141 LDCSFCSTGKQGFERDLTAAEIIGQLWVAN--------ASYMEGVDSSEWQNNVTNVVMM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+ V S+S+ SKRR+TLSTSG VP + + ++I V LAISLHA
Sbjct: 193 GMGEPLLNYKPVVSSMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDIDVALAISLHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPRDALNL 302
+++LRN LVPIN+KYPL LI A + Y + + +T EYVML G+NDS A L
Sbjct: 253 PNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAHQL 312
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +L+G+P+KINLIPFNP+P Y S I FS + +G+ IR RG DI AAC
Sbjct: 313 VALLEGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDDIDAAC 372
Query: 363 GQLKSLS-KRIPKVPRQEMQI 382
GQL R + + + I
Sbjct: 373 GQLVGQVADRTRRSAKWQESI 393
>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
symbiont]
Length = 376
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 161/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E +++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 8 EKINLLDLNRQQMREFFVEMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 63
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ +E S DGT KW +R + +ETVYIPE R TLCVSSQVGC
Sbjct: 64 MQRAEIRAPEVAEEMRSSDGTIKWAIRVGDQL------VETVYIPEADRATLCVSSQVGC 117
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 118 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 167
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 168 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ +R+ +VPIN+KY +E + A + Y G SNA R+T EYVML +NDS A L
Sbjct: 228 APNDTIRDDIVPINKKYNIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHEL 287
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 288 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 347
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R++M
Sbjct: 348 GQLAGDVIDRTKRTLRKKMA 367
>gi|300724166|ref|YP_003713483.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
nematophila ATCC 19061]
gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
nematophila ATCC 19061]
Length = 392
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 158/378 (41%), Positives = 217/378 (57%), Gaps = 23/378 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ + + +G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+
Sbjct: 81 QVAEIKAPEVAEEQRSSDGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQVGCA 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGR----------RPITNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++D+R+ +VPINRKY +E + R Y SNA R+T EYVML +NDS A L
Sbjct: 245 PTDDIRDEIVPINRKYNIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDSVEQAHQLA 304
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364
Query: 364 QLKSLS-KRIPKVPRQEM 380
QL R + ++ +
Sbjct: 365 QLAGDVIDRTKRTLKKRL 382
>gi|326316277|ref|YP_004233949.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 373
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 149/383 (38%), Positives = 211/383 (55%), Gaps = 25/383 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + L ++G R R Q+++WI+ RG DF MSD+++ +R L+
Sbjct: 3 KNLLDFDLDGLAAFCEQLG----EKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSG 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ ++ E +S DGT KWL G +E+V+IPE RGTLC+SSQ GC++
Sbjct: 59 CAHVAALPVISEHVSADGTVKWLFDV-----GDGNAVESVFIPEDDRGTLCISSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNLT+ EI+ Q+ A L G ++ R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQE----------RVISNVVMMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L D G S+RR+T+STSG VP + R+ ++ V +A+SLHA
Sbjct: 164 MGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAP 223
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+NRKYPL L+DAC Y + ITFEY ML G+ND P A LI ++
Sbjct: 224 NDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLV 283
Query: 307 KGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K NLIPFNP+P S+ + F++ + +G + +R RG DI AA
Sbjct: 284 RPRGAEGVRCKFNLIPFNPFPASGLHRSNPGQVAAFAKLLSDAGIVTTVRKTRGDDIDAA 343
Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383
CGQL K R R Q T
Sbjct: 344 CGQLAGDVKDRTRAAERMARQRT 366
>gi|299771620|ref|YP_003733646.1| UPF0063 protein yfgB [Acinetobacter sp. DR1]
gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter sp. DR1]
Length = 411
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 168/382 (43%), Positives = 224/382 (58%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+GM R ELE+ IG + R Q+ KWI+ I DF M++IS ++R L
Sbjct: 29 NKVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWIHQYFITDFAEMTNISGKLRAKL 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS
Sbjct: 85 EQICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISS 141
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + + R ++
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYME--------EVPVAERERSVT 193
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373
Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 374 DIDAACGQLVGQVADRTRRAEQ 395
>gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
Length = 398
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 160/380 (42%), Positives = 219/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 30 SKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKGLRTKL 85
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 86 QRVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G V + R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVM 189
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L
Sbjct: 250 APTDDIRDDIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQL 309
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 310 AACLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKMA 389
>gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301]
gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301]
Length = 374
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 153/376 (40%), Positives = 220/376 (58%), Gaps = 16/376 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + +L + + G R Q+ +W++ G+ DF+ M+DI++ +R L
Sbjct: 9 VNLLNFNQPQLAKWFAEQG----EKPFRAKQLMRWMHHFGVYDFEQMTDIAKVLREKLVV 64
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P + E++S DGTRKWL+ IETV+IPE RGTLC+SSQVGC+L
Sbjct: 65 DAEITLPNVQLEQVSNDGTRKWLI-----GTDTANSIETVFIPEDDRGTLCISSQVGCAL 119
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNL+ EI+ Q+ +A L G + ++ + R ISN+VMMG
Sbjct: 120 ECTFCSTGRQGFNRNLSVSEIIGQLAIANQSLRQESGYD-----LLSANDRIISNVVMMG 174
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+DNV ++ I D S+RR+TLSTSG VP + R+ E+ V LA+SLHA
Sbjct: 175 MGEPLANYDNVVTAMQIMLDDNAYGLSRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAP 234
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+++VPIN+KYPL+ L+ AC Y + +TFEYVML G+ND+ A L+ ++
Sbjct: 235 NDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLDLV 294
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ + K NLIPFNP+P Y S I F + + ++GY +R RG DI AACGQL
Sbjct: 295 RNVSCKFNLIPFNPFPNSGYDTSKASHIRVFRDILMQAGYVVTVRKTRGEDIDAACGQLA 354
Query: 367 SLSKRIPKVPRQEMQI 382
+ K R +I
Sbjct: 355 GKV--LDKTKRTANRI 368
>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
Length = 380
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 160/385 (41%), Positives = 227/385 (58%), Gaps = 22/385 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +K +L+G+ R ++EE L +G + R Q+ KWI+ F+ M+D+ + +
Sbjct: 1 MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L++ I P++ E IS DGTRKW+ + +ETV+IP+ RGTLCVSS
Sbjct: 57 RQKLSEVAEIRGPKVTHESISRDGTRKWVFE-----MDNGGAVETVFIPDGRRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ CSFC TG Q R++T+ EI+ QV A G I+
Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFG----------PRRNLGQHPIT 161
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V ++ I D +G K+RIT+STSG +P + ++ E++ V LA
Sbjct: 162 NVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLA 221
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRD 298
+SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y IT EYVML+ +ND P
Sbjct: 222 VSLHAPNDELRNQLVPLNRKYPLKDLMAACKSYSKNITHRHNTITMEYVMLRDVNDKPEH 281
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+K+L GIP K+NLIPFNP+P Y S + DI+ F + + +G + +RT RG DI
Sbjct: 282 ARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDI 341
Query: 359 LAACGQLKSLSK-RIPKVPRQEMQI 382
AACGQL K R + R + I
Sbjct: 342 DAACGQLVGQVKDRTRRSERWKESI 366
>gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118]
gi|123397164|sp|Q21W25|RLMN_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
Length = 382
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 142/380 (37%), Positives = 208/380 (54%), Gaps = 24/380 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L+ + L ++G R R Q+++WI+ +G +F MSD+++ +R L
Sbjct: 4 NLLDFDLDGLAVFCERLG----EKRYRAVQLFRWIHQKGASNFDDMSDLAKSLREKLKVS 59
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ P+++ + IS DGT KWL GG +E V+IPE+ RGTLC+SSQ GC++
Sbjct: 60 AQVKAPDLISQHISSDGTIKWLFDV-----GGGDAVEAVFIPEEDRGTLCISSQAGCAMG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG Q RNL EI+ Q+ A L + R ISN+VMMGM
Sbjct: 115 CRFCSTGHQGFSRNLKTGEIIAQLWFAEHFLRKH----------LQRDERVISNVVMMGM 164
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N+ + +L D G S+RR+T+STSG VP + R+ + V LA+SLHA +
Sbjct: 165 GEPLQNYAELVPALRAMLDDHGYGLSRRRVTVSTSGVVPMMDRLARDCPVALAVSLHAPN 224
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ LR+ LVP+N+KY L L++AC Y + ITFEY ML+ +ND P A L+++++
Sbjct: 225 DLLRDDLVPLNKKYSLAELLNACNRYLAYAPRDFITFEYCMLEDVNDQPEHAQQLVRLVQ 284
Query: 308 G-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ K NLIPFNP+P S + I F++ + +G + IR RG DI AAC
Sbjct: 285 HYSSGGVWCKFNLIPFNPFPASGLTRSTPERIQAFAKILSDAGIVTTIRKTRGDDIDAAC 344
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K +V + +
Sbjct: 345 GQLAGEVKDRTRVGERIARQ 364
>gi|329848315|ref|ZP_08263343.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19]
gi|328843378|gb|EGF92947.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19]
Length = 405
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 206/380 (54%), Positives = 270/380 (71%), Gaps = 17/380 (4%)
Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++ G+ R+ L ALL+ G+ +R +MR QIW+WI+ G+ DF M+DI+++ R L
Sbjct: 18 VNITGLTRDGLVRALLESGVVEERKAKMRMQQIWRWIHHYGVTDFDLMTDIAKDQRALFA 77
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
F++ PEIV+ +IS DGTRK+L+R G +E+E+V+IP R G LCVSSQVGC
Sbjct: 78 DRFTLARPEIVERQISRDGTRKYLIRM-----GPGIEVESVFIPSVGRAGALCVSSQVGC 132
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQKLVRNLTA EI+ QV +AR LG++P P R++SNIV
Sbjct: 133 TLNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRQLSNIVF 183
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N DNV ++ I SD+ G++ S+RRIT+STSG VP + +G MLAISLH
Sbjct: 184 MGMGEPLYNLDNVADAIDIISDNEGIALSRRRITVSTSGVVPELEALGNRTAAMLAISLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ +VP+N+KY +E L+ R YPGLSNARR+TFEYVMLKG+NDSP +A LIK
Sbjct: 244 ATNDTLRDEIVPLNKKYNIEALMAGIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIK 303
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGIPAKINLIPFNPWPG +Y CSD I TF+ + ++GY+SPIRTPRG DILAACGQ
Sbjct: 304 LLKGIPAKINLIPFNPWPGTDYQCSDWTAIETFAAILNKAGYASPIRTPRGRDILAACGQ 363
Query: 365 LKSLSKRIPKVP-RQEMQIT 383
LKS S++ R+E Q
Sbjct: 364 LKSDSEKKRASVLRREAQNA 383
>gi|118497539|ref|YP_898589.1| radical SAM superfamily protein [Francisella tularensis subsp.
novicida U112]
gi|195536235|ref|ZP_03079242.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
novicida FTE]
gi|208779338|ref|ZP_03246684.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
gi|254372900|ref|ZP_04988389.1| hypothetical protein FTCG_00471 [Francisella tularensis subsp.
novicida GA99-3549]
gi|205829766|sp|A0Q6H0|RLMN_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|118423445|gb|ABK89835.1| radical SAM superfamily protein [Francisella novicida U112]
gi|151570627|gb|EDN36281.1| hypothetical protein FTCG_00471 [Francisella novicida GA99-3549]
gi|194372712|gb|EDX27423.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
novicida FTE]
gi|208745138|gb|EDZ91436.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
Length = 370
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 158/382 (41%), Positives = 230/382 (60%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4]
gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4]
Length = 372
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 165/384 (42%), Positives = 227/384 (59%), Gaps = 20/384 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M + +L+ + R LE ++G R Q+ +W++ + + DF M+D+S+ +
Sbjct: 1 MMTDSRINLLNLDRVGLEAFFARLG----EKPFRARQMLRWLHQQFVTDFSAMTDLSKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I PE+V + S DGT KWLLR G IETV+IPE+ RGTLCVSS
Sbjct: 57 RARLAETAVIALPEVVHQHHSTDGTYKWLLRVS-----GGNCIETVFIPEEDRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC L CSFC TG Q RNL EI+ Q+ LA LG P E R I+
Sbjct: 112 QVGCILDCSFCATGKQGFNRNLGVSEIIGQLWLANKALGRDPKGE-----------RIIT 160
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NF+NV ++++ D S RR+TLST+G VP + R+ V LA
Sbjct: 161 NVVMMGMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAICPVSLA 220
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +++LR+ LVP+N++YP+ L+ ACR Y R +TFEYVML G+NDS + A
Sbjct: 221 VSLHAPTDELRDELVPLNKRYPIGELLAACRRYVAGDRRRAVTFEYVMLAGVNDSLQHAR 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+++L+G+PAK+NLIPFNP+PG Y SD + I F E + R G + R RG DI A
Sbjct: 281 ALLRLLQGLPAKVNLIPFNPFPGSLYRRSDTETIDRFREELLRGGLMTVTRKTRGDDIAA 340
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL + + + ++ G
Sbjct: 341 ACGQLAGRVQDRTRRTLNQQRVAG 364
>gi|319941514|ref|ZP_08015841.1| ribosomal RNA large subunit methyltransferase N [Sutterella
wadsworthensis 3_1_45B]
gi|319804988|gb|EFW01827.1| ribosomal RNA large subunit methyltransferase N [Sutterella
wadsworthensis 3_1_45B]
Length = 400
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 151/381 (39%), Positives = 210/381 (55%), Gaps = 19/381 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+ L+ IG R Q+ +W++ + DF M+D+++ R L
Sbjct: 24 RVNLLDFDAAGLKAWCESIG----EKPFRARQLTRWVHRHLVCDFNEMTDLAKTFRAKLL 79
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE++ EK S DGTRKWL G +E V+IPE RGTLC+SSQ GC+
Sbjct: 80 KLAEIRPPEVIHEKKSSDGTRKWLFAV-----GNGNAVEAVFIPEDDRGTLCISSQAGCA 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q RNLT EI+ Q+ A L + + R ISN+V+M
Sbjct: 135 MGCLFCSTGKQGFNRNLTTAEIVGQLWTAEREL-------CRDRGITDPNDRVISNVVLM 187
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N D V ++ I D G S+RR+T+STSG V I ++ E V LA+SLHA
Sbjct: 188 GMGEPLQNLDAVIPAIKIFLDDDGYGLSRRRVTVSTSGLVRQIDKLAEAAPVALAVSLHA 247
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR+ L+PIN+K+PL L+ ACR Y ++ ITFEYVML GINDS DA +L +
Sbjct: 248 ADDGLRDKLMPINKKHPLGDLMAACRRYLRVAPRDFITFEYVMLGGINDSLADADHLAAL 307
Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++ +P K NLIPFNP+P + D++ ++ F + GY + +R RG DI AACG
Sbjct: 308 VRREHVPCKFNLIPFNPFPQSDLEKPDREKVLAFCRRLNELGYVTTVRKTRGDDIDAACG 367
Query: 364 QLKSLSK-RIPKVPRQEMQIT 383
QL + R + R Q
Sbjct: 368 QLAGEVRDRTRRAERLAQQKA 388
>gi|325577793|ref|ZP_08148068.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
33392]
gi|325160538|gb|EGC72664.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
33392]
Length = 382
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 155/383 (40%), Positives = 218/383 (56%), Gaps = 24/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R
Sbjct: 10 TNTKKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 65
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQ
Sbjct: 66 EKLKAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQ 119
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C+FC T Q RNLT EI+ QV A ++G+F R I+N
Sbjct: 120 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITN 169
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D SKRR+TLSTSG VP + + ++I V LAI
Sbjct: 170 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAI 229
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDA 299
SLHA +++LR+ ++PIN+KY + ML+D+ Y +SN ++T EYV+L +ND A
Sbjct: 230 SLHAPNDELRDEIMPINKKYNIRMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHA 289
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L K+LK P KINLIP+NP+P Y S + F + + G++ +R RG DI
Sbjct: 290 HQLAKVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 349
Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
AACGQL I + R M+
Sbjct: 350 AACGQLAGDV--IDRTKRTAMKR 370
>gi|317403336|gb|EFV83849.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans C54]
Length = 384
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 152/384 (39%), Positives = 212/384 (55%), Gaps = 10/384 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++
Sbjct: 1 MESVERINLLGLDGSALSELVGQWG----GKPFRARQLQRWMHQRGADSFDAMTDLARDF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L I + E+ S DGTRKWL G IETV+IPE RGTLC+SS
Sbjct: 57 RGQLASRCVIEALAVNTEQRSSDGTRKWLFDV-----GQGNAIETVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC TG Q RNL EI+ Q+ A+ +L G +E R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATDDTRVIS 171
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAR 291
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI I + I K+NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 292 ELIHIARQIRCKLNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351
Query: 361 ACGQLKSLSK-RIPKVPRQEMQIT 383
ACGQL + R R Q
Sbjct: 352 ACGQLAGEVRDRTRITERNAAQRQ 375
>gi|332184101|gb|AEE26355.1| radical SAM superfamily protein [Francisella cf. novicida 3523]
Length = 370
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 158/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +R+ L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRNKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60 KEKTEITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L+ AC+ Y + ITFEY +++ IND+ DA L+
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLKACKLYAEKGPHKHITFEYTLMEEINDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|253988864|ref|YP_003040220.1| ribosomal RNA large subunit methyltransferase N [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 392
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 217/379 (57%), Gaps = 22/379 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ + + +G R Q+ KWIY DF+ M+DI++ +R L
Sbjct: 25 KINLLDLDRKQMRQFFVDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKTLRAKLQ 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+
Sbjct: 81 QVAEIRAPEVAEEQRSADGTIKWAISVGD------QQVETVYIPEDDRATLCVSSQVGCA 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGR----------RPITNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++D+R+ +VPINRKY +E + R Y SNA R+T EYVML INDS A L
Sbjct: 245 PTDDIRDDIVPINRKYNIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDSVEQAHQLA 304
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P+KINLIP+NP+PG Y S I F++ + G+++ +R RG DI AACG
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMGYGFTTIVRKTRGDDIDAACG 364
Query: 364 QLKSLSKRIPKVPRQEMQI 382
QL K ++ Q+
Sbjct: 365 QLAGDVIDRTKRTLKKRQL 383
>gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
Length = 399
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 158/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L
Sbjct: 31 QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCFDDFDQMTDINKVLRAKL 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ DE+ S DGT KW ++ + +ETVYIPE R TLCVSSQVGC
Sbjct: 87 KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 140
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 141 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGR----------RPITNVVM 190
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISLH
Sbjct: 191 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 250
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPIN+KY +E + + Y SNA R+T EYVML INDS A L
Sbjct: 251 APTDDVRDEIVPINKKYNIETFLASVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQL 310
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 311 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 370
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + ++ +
Sbjct: 371 GQLAGDVIDRTKRTLKKRLA 390
>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
Length = 388
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 154/379 (40%), Positives = 222/379 (58%), Gaps = 21/379 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ R++LE+ +G R R Q+ KW++ +G+ DF MS++ + +R L
Sbjct: 16 KVNLLGLSRQQLEDFFTDLG----EKRFRAQQVMKWMHHQGVIDFAAMSNLGKGLREKLE 71
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+I PEI D++ S DGTRKW +R G +E V IPE R TLCVSSQVGCS
Sbjct: 72 TLATITPPEIADQQDSADGTRKWAVRV-----AGGALVEAVLIPEAGRATLCVSSQVGCS 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC TG Q R+LTA EI+ QV LA + + + GR ++N+VMM
Sbjct: 127 LDCKFCSTGKQGFQRDLTAAEIIGQVWLAINSYSGWQSGK----------GRIVTNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++S+ +D + SKR++TLSTSG VP + R+ E V LA+SLHA
Sbjct: 177 GMGEPLLNFDNVVSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRLAEFSDVSLAVSLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
++++RN +VPINR+YP++ L+ + + Y + R+ +T EY +L G+ND P A L
Sbjct: 237 PNDEIRNKIVPINRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELS 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK P KINLIPFN +P + + F + + +G+ +R+ RG DI AACG
Sbjct: 297 TLLKDFPCKINLIPFNHFPNSGFDRPSGNAVSRFWQVLVDAGFIVTVRSTRGDDIDAACG 356
Query: 364 QLKSLSKRIPKVPRQEMQI 382
QL + + Q+
Sbjct: 357 QLVGEVVDRTRRSERYRQL 375
>gi|254374354|ref|ZP_04989836.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
gi|151572074|gb|EDN37728.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
Length = 370
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 159/382 (41%), Positives = 230/382 (60%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ IND+ DA L+
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
Length = 411
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 167/382 (43%), Positives = 225/382 (58%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+GM R ELE+ IG + R Q+ KW++ I DF M++IS ++R L
Sbjct: 29 NKVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWMHQYFITDFAEMTNISGKLREKL 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS
Sbjct: 85 EQICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISS 141
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + + R ++
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYME--------EVPVAERERSVT 193
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
ISLHA +++LRN LVPIN+KYPL LI AC+ Y S+ + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHP 313
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373
Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 374 DIDAACGQLVGQVADRTRRAEQ 395
>gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
Length = 393
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 158/380 (41%), Positives = 219/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L
Sbjct: 25 QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRTKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ DE+ S DGT KW ++ + +ETVYIPE R TLCVSSQVGC
Sbjct: 81 KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 135 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGR----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPIN+KY +E +++ Y SNA R+T EYVML INDS A L
Sbjct: 245 APTDDVRDEIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 305 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 364
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + ++ +
Sbjct: 365 GQLAGDVIDRTKRTLKKRLA 384
>gi|221133865|ref|ZP_03560170.1| hypothetical protein GHTCC_02964 [Glaciecola sp. HTCC2999]
Length = 389
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 162/382 (42%), Positives = 216/382 (56%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R + E L IG R QI +WIY G+ MS+I+++++ L
Sbjct: 18 KKTNLLDLTRSGMREFLSSIG----EKPFRADQIMQWIYHHGVSSVDEMSNINKQLKAKL 73
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N H I+ PEI ++ + DGT K+ L G E+E V+IPE R TLCVSSQVGC
Sbjct: 74 NTHAEIVAPEIAYQQNATDGTIKFALTLN-----GGQEVEAVWIPETDRATLCVSSQVGC 128
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNL+ EI+ QV G+ + R I+N+VM
Sbjct: 129 ALECTFCSTAQQGFNRNLSVSEIIGQVWRV----------ATTIGLSKDTAKRPITNVVM 178
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ + D G SKRR+TLSTSG VP + +G++I V LAISLH
Sbjct: 179 MGMGEPLLNLKNVVPAMELMMDDYGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLH 238
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302
A ++ LR+ +VP+N+KY +E + R Y S N ++T EYVML INDS A L
Sbjct: 239 APNDTLRDEIVPVNKKYNIETFLAGVRRYLDKSKANQGKVTVEYVMLSHINDSTDQAHEL 298
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K+L G P KINLIPFNP+PG Y CS I FS+ + +GY+ +R RG DI AAC
Sbjct: 299 AKVLSGTPCKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMAAGYTVMVRKTRGDDIDAAC 358
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL K + Q+ G
Sbjct: 359 GQLVGDVVDRTK-RMLKKQLKG 379
>gi|254499335|ref|ZP_05112006.1| radical SAM protein [Legionella drancourtii LLAP12]
gi|254351440|gb|EET10304.1| radical SAM protein [Legionella drancourtii LLAP12]
Length = 378
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 168/374 (44%), Positives = 226/374 (60%), Gaps = 20/374 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ +++ E L G R QI +WI+ G+ DF M+++ + +R L
Sbjct: 4 QKVNLLNYNYQQMRELLSSWG----EQPYRAQQIIQWIHQSGLVDFAQMTNLGKALREKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC
Sbjct: 60 SQLSYIKVPEIVTCQKSSDGTHKWLLKL-----DCGNCIETVFIPEANRGTLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC T Q RNL+ EI+ QV LA L G D ++++N+VM
Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAVRELSTNQGVHD----------KRLTNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV +++I D SKRR+TLSTSG +P++ R+ + V LA+SLH
Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDFAYGLSKRRVTLSTSGVLPDLERLRQVSPVALAVSLH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LRN LVPIN+KYPL L+ C+ Y R++TFEYVMLKG+ND P A LIK
Sbjct: 225 APNDELRNELVPINKKYPLAQLMALCKIYFKDEPRRKVTFEYVMLKGVNDQPEHATQLIK 284
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ +PAK+NLIPFNP+P +Y S Q I F + + +G ++ R RG DI AACGQ
Sbjct: 285 LLRDVPAKVNLIPFNPFPMTQYQRSSQAAIDAFRDKLIANGINTITRKTRGDDIDAACGQ 344
Query: 365 LKSLSK-RIPKVPR 377
L K R + R
Sbjct: 345 LAGEVKDRTSRSQR 358
>gi|187931627|ref|YP_001891611.1| radical SAM enzyme domain, Cfr family [Francisella tularensis
subsp. mediasiatica FSC147]
gi|205829765|sp|B2SGH6|RLMN_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|187712536|gb|ACD30833.1| radical SAM enzyme domain, Cfr family [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 370
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 158/382 (41%), Positives = 230/382 (60%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQNGPHKHITFEYTLMEEVNDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|291613878|ref|YP_003524035.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
gi|291583990|gb|ADE11648.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
Length = 359
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 154/377 (40%), Positives = 218/377 (57%), Gaps = 20/377 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + + G R Q+ +WIY G DF MSD++ +R L
Sbjct: 2 QNLLDFEPAAMTAWFAEHG----EKPFRARQVLRWIYKGGESDFDAMSDLAISLREKLKL 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+++ E+ + DGTRKWLL G +ETV+IPE+ RGTLCVS+Q GC+L
Sbjct: 58 IACIQSPKVMREETASDGTRKWLLDV-----GTGNAVETVFIPEEGRGTLCVSTQAGCAL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNL+ EI+ QV A LG ++N+V+MG
Sbjct: 113 DCAFCSTGKQGFNRNLSTAEIIGQVWWANRELGKD-----------ADGNWPVTNVVLMG 161
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDN +L + D S+RR+T+STSG VP + R+ +E V LAISLHA
Sbjct: 162 MGEPLLNFDNTVNALRLMLDDNAYGLSRRRVTVSTSGVVPAMDRLRDECPVALAISLHAP 221
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LRN+LVPIN+KYPL+ L+ AC+ Y + +TFEYVML G+NDS + A LI+++
Sbjct: 222 NDALRNVLVPINQKYPLQELMAACQRYLEKAPRDFVTFEYVMLAGVNDSVQHARELIELV 281
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+P Y SD ++ F + + ++G + IR RG DI AACGQL
Sbjct: 282 RDVPCKFNLIPFNPFPQAPYQRSDMPTVLRFRDVLMQAGIVTTIRKVRGDDIAAACGQLA 341
Query: 367 SLSKRIPKVPRQEMQIT 383
+ K + M+++
Sbjct: 342 GQVQDKTKRTHRLMEVS 358
>gi|187478836|ref|YP_786860.1| hypothetical protein BAV2346 [Bordetella avium 197N]
gi|123725044|sp|Q2KY87|RLMN_BORA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|115423422|emb|CAJ49956.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 382
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 146/381 (38%), Positives = 216/381 (56%), Gaps = 10/381 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ ++ +L+G+ + L + + + G R Q+ +W++ R + F M+D++++
Sbjct: 1 MDTVEPINLLGLDAKALTDLVGQWG----GKPFRARQLQRWVHQRSVDSFDAMTDLARDF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L++ I + E+ S DGTRKWL G IETV+IPE RGTLC+SS
Sbjct: 57 RAQLSERAIIEALPVNIEQRSSDGTRKWLFDV-----GQGNAIETVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC TG Q RNL EI+ Q+ A+ +L G + R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRTSEIIGQLWWAKRVLEADIGSARLANAGAEDT-RVIS 170
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V +L + D G S+RR+T+STSG VP + R+ ++ V LA
Sbjct: 171 NVVMMGMGEPLLNYDQVLPALRLMLDDNGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALA 230
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A
Sbjct: 231 VSLHAPNDALRDDLVPLNKKYPLKELLAACERYLAHAPRDFITFEYCMLDGINDTDQHAK 290
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 291 ELIQLARQVRCKLNLIPFNPFPASGLKRSAAPRVKVFAQRLMDAGIITTVRKTRGDDIDA 350
Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
ACGQL K ++ +
Sbjct: 351 ACGQLAGEVKDRTRITERNAA 371
>gi|332678238|gb|AEE87367.1| radical SAM superfamily protein [Francisella cf. novicida Fx1]
Length = 370
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 159/382 (41%), Positives = 230/382 (60%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ IND+ DA L+
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEQLVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|163856328|ref|YP_001630626.1| hypothetical protein Bpet2017 [Bordetella petrii DSM 12804]
gi|205829671|sp|A9IK57|RLMN_BORPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|163260056|emb|CAP42357.1| conserved hypothetical protein [Bordetella petrii]
Length = 381
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 148/380 (38%), Positives = 214/380 (56%), Gaps = 10/380 (2%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M ++ +L+G+ L + + + G R Q+ +WI+ RG F M+D++++
Sbjct: 1 METAERVNLLGLDGAALSDLVGQWG----GKPFRARQLQRWIHQRGADSFDAMTDLARDF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L Q I + E+ S DGTRKWL G IETV+IPE RGTLCVSS
Sbjct: 57 RGQLAQQCRIQALPVNTEQRSSDGTRKWLFDV-----GQGNAIETVFIPEDDRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNLT+ EI+ Q+ A+ +L + G R +S
Sbjct: 112 QAGCAVNCRFCSTGHQGFNRNLTSSEIIGQLWWAKRVL-EADAGTARLGGAGNDDTRVVS 170
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D + +L + D S+RR+T+STSG VP + R+ + V LA
Sbjct: 171 NVVMMGMGEPLLNYDQLLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSRDCPVALA 230
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL L+ AC Y + ITFEY ML GIND+ + A
Sbjct: 231 VSLHAPTDALRDELVPLNKKYPLAELLAACERYLASAPRDFITFEYCMLDGINDTDQHAR 290
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A
Sbjct: 291 ALIQVARQVRCKLNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIVTTVRKTRGDDIDA 350
Query: 361 ACGQLKSLSKRIPKVPRQEM 380
ACGQL + +V ++
Sbjct: 351 ACGQLAGEVRDRTRVAQRNA 370
>gi|257093692|ref|YP_003167333.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046216|gb|ACV35404.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 373
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 154/373 (41%), Positives = 210/373 (56%), Gaps = 16/373 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + L + G R Q+ +W++ G DF M+DI++ +R L
Sbjct: 3 VNLLDLDAAGLTAFFAECG----EKPFRARQVLRWLHRFGQLDFDAMTDIARSLREKLRA 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++ P ++ +++S DGTRK+L GG +E V+IPE RGTLC+S+Q GC+L
Sbjct: 59 TAQVLPPVVIADRLSDDGTRKFLFDV-----GGGNAVEAVFIPEAERGTLCISTQAGCAL 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG Q RNLT EI+ Q+ AR LG + E G R ISN+V+MG
Sbjct: 114 DCSFCSTGKQGFNRNLTVAEIVGQLWQARHSLGAYAAGETAGGE------RVISNVVLMG 167
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N DN +L + D S+RR+T+STSG VP + R+ E V LA+SLHA
Sbjct: 168 MGEPLANLDNTVTALRLMLDDNAYGLSRRRVTVSTSGLVPAMDRLRNECPVALAVSLHAP 227
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVPINRKYPL L+ AC Y + +TFEYVML G+NDS A L+ +
Sbjct: 228 NDRLRDELVPINRKYPLHELMSACLRYLEKAPRDFVTFEYVMLAGVNDSDAQAHELLALT 287
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +P K NLIPFNP+PG Y S I F+E + +G + R RG DI AACGQL
Sbjct: 288 RDVPCKFNLIPFNPFPGSPYHRSSAPRIRQFAETLIDAGVVTTTRKTRGDDIDAACGQLA 347
Query: 367 SLS-KRIPKVPRQ 378
R + R+
Sbjct: 348 GQVLDRTQRTGRR 360
>gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
Length = 411
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 166/391 (42%), Positives = 232/391 (59%), Gaps = 24/391 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N ++K +L+GM R ++E+ +G + R Q+ KWI+ + DF M++IS ++R
Sbjct: 26 NTVEKVNLLGMSRPQMEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----GTLC 117
L + I PE+V + S DGTRKW+ R G +ETV IP + R TLC
Sbjct: 82 EKLEKICEIKAPEVVHKNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEHRSGLRRTLC 138
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQVGC+L CSFC TG Q R+LT EI+ Q+ +A + + + R
Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLTQAEIIGQLWMANYSYME--------DVPVLERER 190
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
++N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V
Sbjct: 191 SVTNVVMMGMGEPLLNYDAVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDIDV 250
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGIN 293
LAISLHA +++LRN LVPIN+KYPLE LI AC+ Y S+ + +T EYVML G+N
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVN 310
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D P A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR
Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQT 370
Query: 354 RGLDILAACGQLKSLS-KRIPKVPRQEMQIT 383
RG DI AACGQL R + + + +I
Sbjct: 371 RGDDIDAACGQLVGQVADRTRRAEQWKKKIA 401
>gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
Length = 411
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 163/385 (42%), Positives = 224/385 (58%), Gaps = 23/385 (5%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N + K +L+GM R +LE+ +G + R Q+ KWI+ + DF M++IS ++R
Sbjct: 26 NSVAKVNLLGMSRPQLEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----GTLC 117
L + I PE+V + S DGTRKW+ R G +ETV IP + R TLC
Sbjct: 82 EKLEKLCEIKAPEVVHKNYSKDGTRKWVFRV---GEGEGSLVETVLIPAEHRSGLRRTLC 138
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQVGC+L CSFC TG Q R+L +EI+ Q+ +A + + + R
Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANYSYME--------DVPVAERER 190
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
++N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V
Sbjct: 191 SVTNVVMMGMGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDV 250
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGIN 293
LAISLHA +++LRN LVPIN+KYPL LI AC+ Y + +T EYVML G+N
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGVN 310
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D P A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR
Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQT 370
Query: 354 RGLDILAACGQLKSLSKRIPKVPRQ 378
RG DI AACGQL + Q
Sbjct: 371 RGDDIDAACGQLVGQVADRTRRAEQ 395
>gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
Length = 380
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 152/387 (39%), Positives = 217/387 (56%), Gaps = 22/387 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ K +L+ + E+L+ G R +Q+ KWI+ R + DF M+D+S+ +
Sbjct: 1 MSDTAKINLLDLNFEQLKAFFSDRG----EKAFRATQVTKWIHHRCVDDFDEMTDLSKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG------PVEIETVYIPEKSRG 114
R +L + + PE+V E+ S DGTRKW+L + ++E V+IPE RG
Sbjct: 57 REMLKRDAEVRAPEVVLEQKSADGTRKWVLDLDNQATASRTTPAIGNKVEMVFIPEDGRG 116
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
TLCVSSQVGCSL CSFC T Q RNL+ EI+ QV A+ L +
Sbjct: 117 TLCVSSQVGCSLDCSFCSTARQGFSRNLSVAEIIGQVWQAKRTLLELG------------ 164
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+++N+VMMGMGEPL N+ V ++++ D MG SKR++T+STSG VP + R+ E+
Sbjct: 165 EDERLTNVVMMGMGEPLMNYRPVIQAVNTMMDDMGYGLSKRKVTISTSGMVPAMERMIED 224
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
LA+SLHA ++ LR+ LVPIN+K+PL L+ C + R +T+EYVML+G+ND
Sbjct: 225 TQCALAVSLHAPNDSLRDELVPINKKHPLNELMGVCDRWVEAGPKRNVTYEYVMLEGVND 284
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
+ A L K+LK AK+NLIPFNP+P Y S + I F + G + R R
Sbjct: 285 NREQAHELGKLLKAREAKVNLIPFNPFPNSGYKRSSEARIKEFKRILNSYGVFTFPRKTR 344
Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQ 381
G DI AACGQL + + + Q
Sbjct: 345 GDDIDAACGQLVGKVQDRSRRHLKFAQ 371
>gi|301154683|emb|CBW14146.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
Length = 382
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 154/383 (40%), Positives = 219/383 (57%), Gaps = 24/383 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R
Sbjct: 10 TNTKKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 65
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQ
Sbjct: 66 EKLKAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQ 119
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C+FC T Q RNLT EI+ QV A ++G+F R I+N
Sbjct: 120 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITN 169
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D SKRR+TLSTSG VP + + ++I V LAI
Sbjct: 170 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAI 229
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDA 299
SLHA +++LR+ ++PIN+KY ++ML+D+ Y +SN ++T EYV+L +ND A
Sbjct: 230 SLHAPNDELRDEIMPINKKYNIKMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHA 289
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI
Sbjct: 290 HQLAQVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 349
Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
AACGQL I + R M+
Sbjct: 350 AACGQLAGDV--IDRTKRTAMKR 370
>gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
Length = 389
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 161/380 (42%), Positives = 223/380 (58%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E + +G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 21 EKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ +EK S DGT KW +R + +ETVYIPE R TLCVSSQVGC
Sbjct: 77 MQLTEIRAPEVAEEKRSSDGTIKWAIRVGDQL------VETVYIPEDDRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ LR+ +VPIN+KY +E + A + Y SNA R+T EYV+L +NDS DA L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYLAKSNANQGRVTIEYVLLDHVNDSTDDAHQL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P+KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC
Sbjct: 301 AELLKDTPSKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R++M
Sbjct: 361 GQLAGDVIDRTKRTMRKKMA 380
>gi|238921042|ref|YP_002934557.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella
ictaluri 93-146]
gi|259491987|sp|C5BET4|RLMN_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
Length = 390
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 162/382 (42%), Positives = 213/382 (55%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R ++ E +++G R QI KWIY DF M+DI++ +R L
Sbjct: 22 EKINLLDLDRRQMREFFVQMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRARL 77
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW L+ +ETVYIPE R TLCVSSQVGC
Sbjct: 78 KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 131
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 132 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 181
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 182 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDTIDVALAISLH 241
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ +R+ +VPINRKY ++M + + R Y SNA R+T EYVML IND A L
Sbjct: 242 APNDTIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 301
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC
Sbjct: 302 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 361
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL K + Q G
Sbjct: 362 GQLAGEVIDRTK-RTLKKQAAG 382
>gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
Length = 373
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 154/384 (40%), Positives = 213/384 (55%), Gaps = 25/384 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+ + + L + ++G R R +Q+++WI+ RG DF MSD++ +R L
Sbjct: 2 RTNLLELDLDGLADFCGQLG----EKRFRATQLFRWIHQRGASDFDAMSDLAVALRTKLK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ ++ E +S DGT KWL G +E+V+IPE RGTLCVSSQ GC+
Sbjct: 58 GCAFVQALPVISEHVSADGTVKWLFDV-----GDGNAVESVFIPEDDRGTLCVSSQAGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q RNLT EI+ Q+ A L + + R ISN+VMM
Sbjct: 113 VGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHALRK----------RLATQSRVISNVVMM 162
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA
Sbjct: 163 GMGEPLQNYTALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHA 222
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ LR+ LVP+NRKYPLE L+DACR Y + ITFEY ML G+ND A LI +
Sbjct: 223 PNDALRDNLVPLNRKYPLEELLDACRRYLEHAPRDFITFEYCMLDGVNDQVEHARQLIAL 282
Query: 306 LK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ I K NLIPFNP+P L S + F++ + +G + +R RG DI A
Sbjct: 283 VNPAQGVPIRCKFNLIPFNPFPASGLLRSPSAQVAMFAKVLSDAGIVTTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSK-RIPKVPRQEMQIT 383
ACGQL K R V R Q T
Sbjct: 343 ACGQLAGDVKDRTRAVERMAKQRT 366
>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 466
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 151/369 (40%), Positives = 206/369 (55%), Gaps = 21/369 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ E L +G + R +Q+++W++ +G F MSD+++ +R L
Sbjct: 3 VNLLDFDLEGLAAFCESLG----EKKFRATQLFRWVHQKGASQFDDMSDLAKSLRDKLRG 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
H + ++ + IS DGT KWL G +ETV+IPE RGTLC+SSQ GC++
Sbjct: 59 HAEVRALPVITQHISADGTIKWLFDV-----GNGDAVETVFIPESDRGTLCISSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL EIL Q+ A L G D R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLKTWEILAQLWFAEHFLRSHLGVSD----------RVISNVVMMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L + D G S+RR+T+STSG VP + R+GE+ V LA+SLHA
Sbjct: 164 MGEPLQNYVALVPALKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLGEDCPVALAVSLHAP 223
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR+ LVP+NRKYPL+ L++ACR Y + ITFEY ML G+ND P A L++++
Sbjct: 224 EDSLRDNLVPLNRKYPLKELMEACRRYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQLV 283
Query: 307 KG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K +P K NLIPFNP+P L S + F+ + G + IR RG DI AACGQ
Sbjct: 284 KESGVPCKFNLIPFNPFPASGLLRSSNNAVQAFARILVDGGLVTTIRKTRGDDIDAACGQ 343
Query: 365 LKSLSKRIP 373
L K
Sbjct: 344 LAGDVKDRT 352
>gi|88858483|ref|ZP_01133125.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
domain [Pseudoalteromonas tunicata D2]
gi|88820100|gb|EAR29913.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
domain [Pseudoalteromonas tunicata D2]
Length = 392
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 165/379 (43%), Positives = 227/379 (59%), Gaps = 21/379 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + RE + E + G R Q+ KWIY G+ +F MS+I+++++ L
Sbjct: 18 KKINLLDLNREGMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNINKKLKARL 73
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I+ PEI ++++ DGT K+ L G E+ETV+IPEK R TLCVSSQVGC
Sbjct: 74 ERECEIVAPEISAKQVAADGTIKYALLLE-----GGQEVETVWIPEKERATLCVSSQVGC 128
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNL EI+ QV +G + S R ++N+VM
Sbjct: 129 ALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIGLYG----------DSTRRPVTNVVM 178
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ + D SKRR+TLSTSG VP + + E I V LAISLH
Sbjct: 179 MGMGEPLLNINNVVPAMELMMDDWAFGLSKRRVTLSTSGVVPALDILKERIDVALAISLH 238
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
A N LR++LVPIN+KYP+E + ACR Y S A + +T EYVML GINDS A L+
Sbjct: 239 APDNALRDVLVPINKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLDGINDSMEQAHQLV 298
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI AACG
Sbjct: 299 ETLKGTPSKVNLIPFNPFPGNEYGRSSNSRIDRFSKILQAAGITCIVRRTRGDDIDAACG 358
Query: 364 QLKSL-SKRIPKVPRQEMQ 381
QL R ++ ++++Q
Sbjct: 359 QLVGDVVDRTKRLAKRQLQ 377
>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
gi|81680833|sp|Q603C0|RLMN_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
str. Bath]
Length = 366
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 162/373 (43%), Positives = 224/373 (60%), Gaps = 26/373 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+ + RE +E +++G R SQ+ +WI+ RG+ DF M+++S+ +R L
Sbjct: 13 RVNLLDLDREGMEAFFVRLG----EKPFRASQLLQWIHQRGVTDFGLMTNLSKTLRSRLE 68
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V E+ S DGTRKW+L+ +ETV IP++ R TLCVSSQVGCS
Sbjct: 69 AVSEIRPPELVLEQRSADGTRKWVLQV-----DAVNRVETVLIPDEGRNTLCVSSQVGCS 123
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC T Q RNLT EI+ Q+ +A+ L + ++ISN+V+M
Sbjct: 124 LECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDE---------------EQRISNVVLM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF NV + + D SKRR+TLSTSG VP + R+ E + LA+SLHA
Sbjct: 169 GMGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDISLAVSLHA 228
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LRN LVPINRKYP+ L+ AC+ Y G N R++TFEYVML G+ND P A L+++
Sbjct: 229 PDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRL 288
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L +P+K+NLIPFNP+P Y CS + I F++ ++ +G + R RG DI AACGQL
Sbjct: 289 LSHVPSKVNLIPFNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDIDAACGQL 348
Query: 366 KSLSKRIPKVPRQ 378
+ RQ
Sbjct: 349 VGKV--NDRSRRQ 359
>gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
Length = 391
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 160/380 (42%), Positives = 219/380 (57%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G DF M++I++++R L
Sbjct: 23 KKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDDFDNMTNINKKLRDKL 78
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 79 KQVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 132
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 133 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 182
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAISLH
Sbjct: 183 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 242
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +NDS A L
Sbjct: 243 APNDELRDEIVPINKKYNIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSVEHAHQL 302
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI AAC
Sbjct: 303 AQVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 362
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K Q+ Q
Sbjct: 363 GQLAGDVIDRTKRTAQKKQF 382
>gi|15603872|ref|NP_246946.1| hypothetical protein PM2007 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|81636369|sp|Q9CJJ8|RLMN_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 394
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 158/383 (41%), Positives = 219/383 (57%), Gaps = 22/383 (5%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R
Sbjct: 23 DQAKKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 78
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L Q I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQ
Sbjct: 79 DKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQ 132
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C+FC T Q RNLT EI+ QV A ++G+F R I+N
Sbjct: 133 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITN 182
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAI
Sbjct: 183 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAI 242
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDA 299
SLHA +++LR+ +VPIN+KY ++ML+D+ Y +SN ++T EYVML +ND A
Sbjct: 243 SLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHA 302
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK P KINLIP+NP+P Y S I F + + G++ +R RG DI
Sbjct: 303 HQLAQVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDID 362
Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
AACGQL K Q+ Q
Sbjct: 363 AACGQLAGDVIDRTKRTAQKKQF 385
>gi|85059741|ref|YP_455443.1| hypothetical protein SG1763 [Sodalis glossinidius str. 'morsitans']
gi|123752598|sp|Q2NS37|RLMN_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|84780261|dbj|BAE75038.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 393
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 212/380 (55%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ M R++L E +G R Q+ KWIY DF M+DI++ +R L
Sbjct: 25 QKLNLLDMNRQQLREFFSSMG----EKPFRADQVMKWIYHYCCDDFDQMTDINKHLRARL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 81 KALAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPEDDRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 135 ALQCTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 185 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++ +R+ +VPINRKY +E + A R Y SN R+T EYVML IND A L
Sbjct: 245 APNDTIRDEIVPINRKYNIETFLSAVRCYLDKSNANKGRVTVEYVMLDHINDGTEHAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
LK P KINLIP+NP+PG Y S + F++ + +++ +R RG DI AAC
Sbjct: 305 AACLKYTPCKINLIPWNPFPGAPYGRSSNSRVDRFAKVLMGYEFTTIVRKTRGDDIDAAC 364
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R+ M
Sbjct: 365 GQLAGEVIDRTKRTLRKRMN 384
>gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
Length = 391
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 154/378 (40%), Positives = 214/378 (56%), Gaps = 22/378 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+G+ +E+ L++G + R Q+ KWI+ G+ D MS++ + +R L
Sbjct: 17 EKVNLLGLPLAAMEQYFLELG----EKKFRAQQVLKWIHHHGVTDIDEMSNLGKVLREKL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PEIV + S DGTRKW +R G +E V IP+ R TLCVSSQVGC
Sbjct: 73 KSVAEIKPPEIVSQHDSNDGTRKWAIRVE-----GGGLVEAVLIPDGKRATLCVSSQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q R+L+A EI+ QV LA F + GR ++N+VM
Sbjct: 128 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSAK----------GRIVTNVVM 177
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV ++ + + SKRR+TLSTSG VP + ++ + V LA+SLH
Sbjct: 178 MGMGEPLLNFDNVVAAMDLMMEDNAYGISKRRVTLSTSGVVPALDKLAKVSEVSLAVSLH 237
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP--GLSNARRITFEYVMLKGINDSPRDALNL 302
A ++ LR+ LVPINRKYP+ +L+++ R+Y R +T EY ++ G+ND A L
Sbjct: 238 APNDALRSELVPINRKYPIAVLLESARNYIDAQSDKKRVVTIEYTLIAGVNDQREHAQEL 297
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P KINLIPFN + +Y + F + + +GY +RT RG DI AAC
Sbjct: 298 AQLLKGYPCKINLIPFNTFDQSDYRRPSGNAVSRFWQVLVDAGYIVTVRTTRGDDIDAAC 357
Query: 363 GQLKSL-SKRIPKVPRQE 379
GQL R + R
Sbjct: 358 GQLVGQVVDRTRRSERYR 375
>gi|315634916|ref|ZP_07890198.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
gi|315476468|gb|EFU67218.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
Length = 384
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 153/380 (40%), Positives = 213/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++++R L
Sbjct: 16 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 72 KSVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 126 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 175
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 176 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 235
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VP+N+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 236 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQL 295
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC
Sbjct: 296 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 355
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K Q+ +
Sbjct: 356 GQLAGDVIDRTKRTAQKKRF 375
>gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1]
gi|205829828|sp|A5WGQ4|RLMN_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|148572786|gb|ABQ94845.1| radical SAM enzyme, Cfr family [Psychrobacter sp. PRwf-1]
Length = 403
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 154/379 (40%), Positives = 214/379 (56%), Gaps = 15/379 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +++GM +E+L IG R +Q+ KWIY G+ DF M+++S+ +R L+
Sbjct: 23 KTNILGMNQEQLGAYFKHIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGLREKLS 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE++ ++ S DGTRKW+ + + V I R TLC+SSQVGC+
Sbjct: 79 EQACIELPEVMHKEFSEDGTRKWVFKVAGGSLVETVLIPADDSKVNGRKTLCISSQVGCA 138
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LTA EI+ Q+ +A +EG+ ++N+VMM
Sbjct: 139 LDCSFCSTGKQGFERDLTAAEIIGQLWVAN--------ASYMEGVDSTEWQNNVTNVVMM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+ V S+ + SKRR+TLSTSG VP + + ++I V LAISLHA
Sbjct: 191 GMGEPLLNYTPVVSSMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDIDVALAISLHA 250
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPRDALNL 302
+++LRN LVPIN+KYPL LI A + Y + + +T EYVML G+NDS A L
Sbjct: 251 PNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAQQL 310
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +L G+P+KINLIPFNP+P Y S I FS + +G+ IR RG DI AAC
Sbjct: 311 VALLDGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDDIDAAC 370
Query: 363 GQLKSLSKRIPKVPRQEMQ 381
GQL + + Q
Sbjct: 371 GQLVGQVADRTRRSAKWQQ 389
>gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
Length = 389
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 162/380 (42%), Positives = 221/380 (58%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E L +G R Q+ KWIY DF+ M+DI++++R+ L
Sbjct: 21 QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E S DGT KW +R + +ETVYIPE R TLCVSSQVGC
Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKITGQRPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++ LR+ +VPIN+KY +E + A + Y SNA R+T EYV+L +NDS DA L
Sbjct: 241 AANDKLRDDIVPINKKYNIETFLAAVKRYIAKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + R +M
Sbjct: 361 GQLAGEVIDRTKRTMRIKMA 380
>gi|294500981|ref|YP_003564681.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551]
gi|294350918|gb|ADE71247.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551]
Length = 363
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 126/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K S+ + +LE L++ G + R QI+ W+YV+ + DF MS++S+ +R L
Sbjct: 16 QKPSIYSLEMHDLENWLVEHG----DKKFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
F++ + V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 KDKFALTTLKTVVQQTSGDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + G ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEP N+D + + L + GL+ R IT+STSG +P I + +E + + AISL
Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +ND+R+ L+PINR Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P +Y+ + ++ I F +K+ G + IR +G DI AACG
Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 352 QLRAKERKEE 361
>gi|254369341|ref|ZP_04985353.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122291|gb|EDO66431.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 370
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 157/382 (41%), Positives = 230/382 (60%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I P++V K+S DGT KWL+ G +ETV+IPE+ RGTLCVSSQ+GC
Sbjct: 60 KDKAQITIPKVVFSKVSKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|295706329|ref|YP_003599404.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319]
gi|294803988|gb|ADF41054.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319]
Length = 363
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 126/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K S+ + +LE L++ G + R QI+ W+YV+ + DF MS++S+ +R L
Sbjct: 16 QKPSIYSLEMHDLENWLVEHG----DKKFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
F++ + V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 KDKFALTTLKTVVQQTSGDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + G ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEP N+D + + L + GL+ R IT+STSG +P I + +E + + AISL
Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +ND+R+ L+PINR Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P +Y+ + ++ I F +K+ G + IR +G DI AACG
Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 352 QLRAKERKEE 361
>gi|304320170|ref|YP_003853813.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis
HTCC2503]
gi|303299073|gb|ADM08672.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis
HTCC2503]
Length = 382
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 189/379 (49%), Positives = 258/379 (68%), Gaps = 16/379 (4%)
Query: 5 KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++ L G+ R L+ +G+ + +MR SQ+W+WIY G+R+F M++I + +R
Sbjct: 15 QRRRLFGLSRAALQSLFAADLGLAPKAAKMRASQVWQWIYSHGVREFDQMTNIGKALRAQ 74
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQV 122
++ + + PE+ + ++S DGTRK+L+RF +E E V+IP R G LCVSSQV
Sbjct: 75 MDALYDLSRPEVAERQVSQDGTRKYLIRF-----APGIEAEAVFIPGVGRAGALCVSSQV 129
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC+TGTQ LVRNLTAEEI+ Q+++ + LG++P D R++SNI
Sbjct: 130 GCTLNCTFCHTGTQALVRNLTAEEIIAQIIVCKDDLGEWPSSRD---------DRQLSNI 180
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D V +++ I +D G+S S+RRIT+STSG V + +GE MLAIS
Sbjct: 181 VFMGMGEPLYNLDAVAQAIDIIADGEGISISRRRITVSTSGVVSQMRALGERTEAMLAIS 240
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA + LRN LVPIN+K+PL+ L+ ACR YPG SNA+RITFEYVMLKGINDS +A L
Sbjct: 241 LHATHDALRNELVPINKKWPLDALLAACRDYPGTSNAKRITFEYVMLKGINDSDAEAREL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++L+GIPAKINLIPFNPWP Y CS I F++ + ++GY+SPIRTPRG DI AAC
Sbjct: 301 VRLLRGIPAKINLIPFNPWPDSPYECSSWDRIERFADIVNQAGYASPIRTPRGRDISAAC 360
Query: 363 GQLKSLSKRIPKVPRQEMQ 381
GQLKS S + R+ +
Sbjct: 361 GQLKSESVKERASARRRTE 379
>gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
Length = 426
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L
Sbjct: 58 QKTNLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRAKL 113
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ DE+ S DGT KW ++ + +ETVYIPE R TLCVSSQVGC
Sbjct: 114 KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 167
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G R I+N+VM
Sbjct: 168 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGR----------RPITNVVM 217
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISLH
Sbjct: 218 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 277
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++D+R+ +VPIN+KY +E +++ Y SNA R+T EYVML +NDS A L
Sbjct: 278 APTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQL 337
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LK P+KINLIP+NP+PG Y S I F + + G+++ +R RG DI AAC
Sbjct: 338 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTTIVRKTRGDDIDAAC 397
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + ++ +
Sbjct: 398 GQLAGDVIDRTKRTLKKRLA 417
>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
Length = 411
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 166/383 (43%), Positives = 223/383 (58%), Gaps = 23/383 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
LKK +L+GM R ELE K+G + R Q+ KW++ + DF M++IS ++R
Sbjct: 28 LKKVNLLGMSRAELENFFEKLG----EKKFRAGQVMKWMHQYFVTDFAEMTNISGKLRAK 83
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVS 119
L Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+S
Sbjct: 84 LEQLCEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCIS 140
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + + R +
Sbjct: 141 SQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYME--------DVPVAERTRSV 192
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V L
Sbjct: 193 TNVVMMGMGEPLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVAL 252
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDS 295
AISLHA +++LRN LVPIN+KYPL LI AC+ Y + +T EYVML G+NDS
Sbjct: 253 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDS 312
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A +I++LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG
Sbjct: 313 LEHAQQMIRLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRG 372
Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 373 DDIDAACGQLVGQVADRTRRAEQ 395
>gi|134301956|ref|YP_001121925.1| radical SAM protein [Francisella tularensis subsp. tularensis
WY96-3418]
gi|205829767|sp|A4IY03|RLMN_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|134049733|gb|ABO46804.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 370
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 157/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P++V K S DGT KWL+ G +ETV+I E+ RGTLCVSSQVGC
Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILEEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|62260668|gb|AAX77923.1| unknown protein [synthetic construct]
Length = 405
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 157/388 (40%), Positives = 231/388 (59%), Gaps = 24/388 (6%)
Query: 1 MNFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
M ++ K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ +
Sbjct: 24 MLEMQQDKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGK 79
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
+RH L + I P++V K S DGT KWL+ G +ETV+I + RGTLCV
Sbjct: 80 NLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILAEGRGTLCV 133
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC+L CSFC TG Q RNL+A E++ Q+ +A L G D
Sbjct: 134 SSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT---------- 183
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
++NIVMMGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV
Sbjct: 184 VTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVS 243
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ D
Sbjct: 244 LAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSD 303
Query: 299 ALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+ +LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG
Sbjct: 304 AEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGD 363
Query: 357 DILAACGQLKSLSKRIPKVPRQEMQITG 384
DI AACGQL ++ ++ G
Sbjct: 364 DIDAACGQLAGDVMDKTNRKQRYLKKLG 391
>gi|319775768|ref|YP_004138256.1| Fe-S-cluster redox enzyme [Haemophilus influenzae F3047]
gi|317450359|emb|CBY86575.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3047]
Length = 383
Score = 374 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 157/380 (41%), Positives = 215/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|319896694|ref|YP_004134887.1| fe-s-cluster redox enzyme [Haemophilus influenzae F3031]
gi|317432196|emb|CBY80548.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3031]
Length = 383
Score = 374 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 157/380 (41%), Positives = 215/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
gi|123264706|sp|Q1QD22|RLMN_PSYCK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|92393156|gb|ABE74431.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5]
Length = 413
Score = 374 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 154/378 (40%), Positives = 217/378 (57%), Gaps = 10/378 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+GM + +L + IG R++Q+ KWIY +G+ DF+ M+++S+ +R L+
Sbjct: 32 KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 87
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I P+++ + S DGTRKW+ + V I R TLCVSSQVGC+
Sbjct: 88 ANACVIPPKVIHRQYSDDGTRKWVFEVTGGSLVETVLIPADDSKLNGRKTLCVSSQVGCA 147
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LTA EIL Q+ +A + + +E + ++N+VMM
Sbjct: 148 LDCSFCSTGKQGFERDLTAAEILGQLWVANASYM-TDENDSLENVDHSLWENNVTNVVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+ V S+ + SKRR+TLSTSG VP + + +E+ V LAISLHA
Sbjct: 207 GMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELDVALAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARRITFEYVMLKGINDSPRDALNL 302
+++LRN LVPIN+KYPLE L+ A R+Y + + +T EYVML G+NDS A L
Sbjct: 267 PNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQL 326
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +L +P+KINLIPFNP+P Y S I FS + +G+ IR RG DI AAC
Sbjct: 327 VALLGNLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDDIDAAC 386
Query: 363 GQLKSLSKRIPKVPRQEM 380
GQL + R
Sbjct: 387 GQLVGQV--ADRTRRSAA 402
>gi|332992286|gb|AEF02341.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
SN2]
Length = 372
Score = 374 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 165/383 (43%), Positives = 222/383 (57%), Gaps = 22/383 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K +L+ + RE L + G R Q+ KWIY +G DF+ MS++++ +R +
Sbjct: 1 MAKTNLLNLNREGLRNFFKEKG----EKPFRADQVMKWIYQQGESDFEKMSNLNKNLRAM 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +H + PEI + + DGT K+ L G E+ETV+IPE R TLCVSSQVG
Sbjct: 57 LIEHCEVKAPEIAYFQEASDGTIKFALALE-----GGQEVETVWIPEADRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L C+FC T Q RNL+ EI+ QV + LG + + R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDTSKRPITNVV 161
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N NV +++I D G SKRR+TLSTSG VP + +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301
HA +++LRN +VP+N+KY +E + R Y S N R+T EYVML INDS A
Sbjct: 222 HAPNDELRNEIVPVNKKYNIEAFLAGVRRYLEKSKANQGRVTVEYVMLSHINDSTDQAHE 281
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L K+LK P KINLIPFNP+PG YLCS I FS+ + G+++ +R RG DI AA
Sbjct: 282 LAKVLKDTPCKINLIPFNPYPGSPYLCSSNSRIDRFSKVLMDYGFTTVVRKTRGDDIDAA 341
Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
CGQL K + Q+ G
Sbjct: 342 CGQLVGDVVDRTK-RLLKKQVKG 363
>gi|295399765|ref|ZP_06809746.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius
C56-YS93]
gi|294978168|gb|EFG53765.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius
C56-YS93]
Length = 364
Score = 374 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 126/368 (34%), Positives = 204/368 (55%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + E+L+ +++ G R +QI++W+Y + + F M+++ + +R L+
Sbjct: 19 PSIYSLTFEQLKNWIIEQG----EKPFRATQIYEWLYQKRVTHFSEMTNLPKALREKLSG 74
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF I + + ++ S DGT K+L IETV + ++CV++QVGC +
Sbjct: 75 HFDITTLKTLVKQTSKDGTMKFLFELH-----DGYSIETVLMRHNYGNSICVTTQVGCRI 129
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A EI+ QV+ + L + +IS+IV+MG
Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKELDE--------------QNERISSIVVMG 175
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP N+D + K L I + + GL+ R IT+STSG +P I + +E + V AISLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHAKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR L+PIN+ YPL L+DA R+Y + RR+TFEY + G+ND A L ++
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKT-GRRVTFEYGLFGGVNDQLEHAEQLAEL 294
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ +NLIP N P Y+ + ++ I F +K+ G + IR +G DI AACGQL
Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPREQIFAFERALKKHGINVTIRREQGHDIDAACGQL 354
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 355 RAKERKEE 362
>gi|290476003|ref|YP_003468899.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
bovienii SS-2004]
gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
bovienii SS-2004]
Length = 392
Score = 374 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 157/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ + + +G R Q+ KW+Y DF+ M+DI++ +R L
Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRMKLQ 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+
Sbjct: 81 QVAEIKAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDERATLCVSSQVGCA 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGR----------RPITNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ + V LAISLHA
Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMVDVALAISLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++D+R+ +VPINRKY +E + R Y SNA R+T EYVML +NDS A L
Sbjct: 245 PTDDVRDEIVPINRKYNIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSVEQAHQLA 304
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364
Query: 364 QLKSLS-KRIPKVPRQEMQ 381
QL R + ++ +
Sbjct: 365 QLAGDVIDRTKRTLKKRLA 383
>gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
Length = 386
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 162/379 (42%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ M R ++ E L +G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 18 EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC
Sbjct: 74 KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNL EI+ QV A ++G+F R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 177
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + + E+I V LAISLH
Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++++R+ +VPIN+KY ++MLID+ Y +SN ++T EYVML IND A L
Sbjct: 238 APNDEIRDEIVPINKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K+LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357
Query: 363 GQLKSLS-KRIPKVPRQEM 380
GQL R + +
Sbjct: 358 GQLAGDVIDRTKRTLEKRK 376
>gi|261856771|ref|YP_003264054.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
Length = 392
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 151/376 (40%), Positives = 217/376 (57%), Gaps = 22/376 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++L++ +++G R +Q+ KW++ R + F M+D+++ +R L
Sbjct: 21 NKINLLGLTPQQLKDWFVELG----EKPFRATQLLKWVHQRRVDSFDDMTDLAKSLRDKL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I P I ++ S DGTRK+LL G +E VYIPE R TLC+SSQVGC
Sbjct: 77 RDLACIRAPAIRLDQQSSDGTRKFLLEL-----DGGGSVEMVYIPEDDRATLCISSQVGC 131
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C+FC TG Q RNLT EI+ Q+ LA ++ + R ISN+V
Sbjct: 132 SLACTFCSTGRQGFNRNLTTAEIVGQLWLAERMID-----------RAVNHNRAISNVVF 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF++V + +I D S+RR+T+STSG +P I R+ E + V LAISLH
Sbjct: 181 MGMGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLPVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR++LVPIN+KYPL+ L+ AC Y + I +EYVML+G+ND P A +I+
Sbjct: 241 APNDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEMIR 300
Query: 305 ILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L K+NLIPFNP+P Y S + I F +K +G ++ R RG DI AAC
Sbjct: 301 LLAPRKDAVKVNLIPFNPFPSSGYKRSSRNRIERFRATLKAAGINTVPRKTRGDDIDAAC 360
Query: 363 GQLKSLSKRIPKVPRQ 378
GQL + + +
Sbjct: 361 GQLVGEFEDKARRQER 376
>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
gi|123748144|sp|Q4FTX0|RLMN_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|71038230|gb|AAZ18538.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 409
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 153/378 (40%), Positives = 217/378 (57%), Gaps = 10/378 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+GM + +L + IG R++Q+ KWIY +G+ DF+ M+++S+ +R L+
Sbjct: 28 KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 83
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I P+++ + S DGTRKW+ + V I R TLC+SSQVGC+
Sbjct: 84 ANACVIPPKVIHRQYSDDGTRKWVFEVTGGSLVETVLIPADDSKLNGRKTLCISSQVGCA 143
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LTA EIL Q+ +A + + +E + ++N+VMM
Sbjct: 144 LDCSFCSTGKQGFERDLTAAEILGQLWVANASYMS-DENDSLENIDHSLWENNVTNVVMM 202
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N+ V S+ + SKRR+TLSTSG VP + + +E+ V LAISLHA
Sbjct: 203 GMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAKELDVALAISLHA 262
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARRITFEYVMLKGINDSPRDALNL 302
+++LRN LVPIN+KYPLE L+ A R+Y + + +T EYVML G+NDS A L
Sbjct: 263 PNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQL 322
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +L +P+KINLIPFNP+P Y S I FS + +G+ IR RG DI AAC
Sbjct: 323 VALLGDLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDDIDAAC 382
Query: 363 GQLKSLSKRIPKVPRQEM 380
GQL + R
Sbjct: 383 GQLVGQV--ADRTRRSAA 398
>gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
Length = 366
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 157/365 (43%), Positives = 215/365 (58%), Gaps = 20/365 (5%)
Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
+ ++G R Q+ +WI+ G + F M+D+++ +R L + I P ++
Sbjct: 14 TDHFAQMG----EKPFRAKQVMRWIHQSGAQTFDEMTDLAKALRAKLEDNAVIGIPALMT 69
Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
+ S DGTRKWLL G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q
Sbjct: 70 SQESRDGTRKWLLDV-----GTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQG 124
Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
RNLTA EI+ Q+ A LG V P R ISN+VMMGMGEP+ N+DNV
Sbjct: 125 FNRNLTAAEIIGQLWWANKALG-----------VTPKNERVISNVVMMGMGEPMANYDNV 173
Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
+LSI D G S+RR+T+STSG VP + R+ +++ V LA+SLHA ++ +R+ +VP+
Sbjct: 174 ITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKDDMPVALAVSLHASNDKVRDEIVPL 233
Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
N+KYPL+ L+ AC Y + ITFEYVML GIND P A L++++K P K NLIP
Sbjct: 234 NKKYPLKELMAACNRYLAKAPRDFITFEYVMLDGINDKPEHARELVQLVKDTPCKFNLIP 293
Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
FNP+P Y S K+I F E + + + +R RG DI AACGQL + K
Sbjct: 294 FNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQVQDKTKRQA 353
Query: 378 QEMQI 382
+ QI
Sbjct: 354 KWQQI 358
>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
Length = 378
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 159/364 (43%), Positives = 217/364 (59%), Gaps = 21/364 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L+E L ++G P R Q+ KWI+ R + DF M+D+ + +R L
Sbjct: 17 KANLLNFDRQALQEWLAQLGEP----PFRAVQLIKWIHQRRVFDFDRMTDLGKPLRARLA 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P V ++ S DG RKWLL G IETV+IPE RGTLCVSSQ+GC
Sbjct: 73 EIAEIRLPSAVFDRTSADGVRKWLLTL-----DGDNAIETVFIPEPGRGTLCVSSQLGCP 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG Q RNLTA EI+ Q+L L +++N+V M
Sbjct: 128 LACTFCSTGQQGFNRNLTAAEIVGQLLFVTQALAADGVAG------------RVTNVVFM 175
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF +V K+ ++ D + S+RR+TLSTSG VP + R+ E + LA+SLHA
Sbjct: 176 GMGEPLANFASVLKASNLMVDEHAYNLSRRRVTLSTSGIVPALYRLAEVSRISLAVSLHA 235
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR+ LVPINRKYP+ L+ ACR+Y + RIT+EYVML +ND+ A L ++
Sbjct: 236 PDDALRDELVPINRKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDGHAQALARL 295
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+P+KINLIPFN +PG Y S + + F+E ++R+GY + +R RG DI ACGQL
Sbjct: 296 LKGVPSKINLIPFNAFPGAPYRSSPPQRVARFTEILQRAGYITTVRKTRGDDIDGACGQL 355
Query: 366 KSLS 369
Sbjct: 356 VGQV 359
>gi|56708143|ref|YP_170039.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670614|ref|YP_667171.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis FSC198]
gi|224457239|ref|ZP_03665712.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370628|ref|ZP_04986633.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254874946|ref|ZP_05247656.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|81597446|sp|Q5NG03|RLMN_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123063459|sp|Q14HF5|RLMN_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|54112615|gb|AAV28941.1| NT02FT0031 [synthetic construct]
gi|56604635|emb|CAG45691.1| Radical SAM superfamily protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320947|emb|CAL09074.1| Radical SAM superfamily protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568871|gb|EDN34525.1| hypothetical protein FTBG_00416 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840945|gb|EET19381.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159349|gb|ADA78740.1| Radical SAM superfamily protein [Francisella tularensis subsp.
tularensis NE061598]
Length = 370
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 156/382 (40%), Positives = 228/382 (59%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P++V K S DGT KWL+ G +ETV+I + RGTLCVSSQVGC
Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILAEGRGTLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
Length = 363
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 158/371 (42%), Positives = 212/371 (57%), Gaps = 22/371 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + L ++G R Q+ +WIY G DF M+DI+ +R+ L Q
Sbjct: 2 QNLLDLDAHALTAYFTEMG----EKPFRAKQLLRWIYQVGESDFAAMTDIAAVLRNKLAQ 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P+IV E++S DGTRKWLL G +E VYIPE +RGTLC+SSQ GC+L
Sbjct: 58 SACITVPDIVREELSDDGTRKWLLSV-----GSGNAVEAVYIPESARGTLCISSQAGCAL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG Q RNLT EI+ Q+ A LG +SN+VMMG
Sbjct: 113 DCSFCSTGKQGFNRNLTVAEIIGQLWWANHQLGKNSEG-----------NWPVSNVVMMG 161
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFDN +L + D S+RR+T+STSG VP + R+ EE V LA+SLHA
Sbjct: 162 MGEPLLNFDNTVSALRLMLDDQAYGLSRRRVTVSTSGIVPAMDRLREECPVALAVSLHAP 221
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND+ + A L++++
Sbjct: 222 NDALRDKLVPVNQKYPLKELLGACQRYLEKAPRDFITFEYVMLDGVNDTVQHAHELVRLV 281
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K P K NLIPFNP+P Y S I F + + ++ + R RG DI AACGQL
Sbjct: 282 KDTPCKFNLIPFNPFPLSPYKRSRPDAIQRFRDVLMQADIITTTRKTRGDDIAAACGQLA 341
Query: 367 SLSKRIPKVPR 377
+ K R
Sbjct: 342 GQV--LDKTRR 350
>gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81419944|sp|Q7N709|RLMN_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 392
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 160/378 (42%), Positives = 216/378 (57%), Gaps = 22/378 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ + + +G R Q+ KWIY DF+ M+DI++ +R L
Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKILRAKLQ 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+
Sbjct: 81 QVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQVGCA 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGR----------RPITNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++D+R+ +VPINRKY +E + R Y SNA R+T EYVML INDS A L
Sbjct: 245 PTDDVRDDIVPINRKYNIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQLA 304
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK P+KINLIP+NP+PG Y S I F++ + G+++ +R RG DI AACG
Sbjct: 305 ECLKETPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACG 364
Query: 364 QLKSLSKRIPKVPRQEMQ 381
QL K ++ Q
Sbjct: 365 QLAGDVIDRTKRTLKKRQ 382
>gi|126668577|ref|ZP_01739531.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
gi|126626982|gb|EAZ97625.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
Length = 370
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 159/380 (41%), Positives = 225/380 (59%), Gaps = 20/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+GM + +LE +G R R +Q+ +W++ RG+ DF M+++S+ +R L
Sbjct: 6 EKTNLLGMPKAKLEAYFESLG----EKRFRATQVLQWVHQRGVGDFDEMTNMSKPLRDKL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ PE+V ++++ DGTRKW++R IETV IP+ RGTLCVSSQ+GC
Sbjct: 62 KLIAEVRGPEVVYDELAKDGTRKWVMRM-----DNGNNIETVLIPDGERGTLCVSSQIGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG + RNLT+ EI+ QV AR P R I+N+VM
Sbjct: 117 SLDCSFCSTGKRGFNRNLTSAEIIGQVWAARK----------TFMPYAPGPDRPITNVVM 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV ++++ + + SKRR+TLSTSG VP I ++GE V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303
A +++LRN LVPIN+KYP+ L+ A R Y L + R+ T EY ++ G+ND A L
Sbjct: 227 AANDELRNQLVPINKKYPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELA 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L+G+P KINLIPFNP+P Y F + +GY + +R PRG DI AACG
Sbjct: 287 EVLRGLPCKINLIPFNPFPESGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACG 346
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QL + + + + +
Sbjct: 347 QLVGKVEDRTRRSARYIAVQ 366
>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
Length = 395
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 154/380 (40%), Positives = 221/380 (58%), Gaps = 15/380 (3%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+GM ++EL + +G R +Q+ KWIY G+ DF M++IS++++H L
Sbjct: 18 KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQHKL 73
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ ++ P + ++ S DGTRKW+ + V I + R TLC+SSQVGC
Sbjct: 74 HEVACVVPPTVKYKEFSQDGTRKWVFEVAGGSLVETVLIPADDGKQFGRKTLCISSQVGC 133
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q R+LT EI+ Q+ +A + + +++N+VM
Sbjct: 134 ALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYME--------NVPPTERENRVTNVVM 185
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N+D V S+S+ D SKRR+TLSTSG VP + + ++I V LAISLH
Sbjct: 186 MGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLH 245
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPRDALN 301
A +++LRN LVPIN+KYPL+ LI A + Y + + IT EYVML G+NDS A
Sbjct: 246 APNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQ 305
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+ +LK +P+KINLIPFNP+P Y S I FS + ++G+ IR RG DI AA
Sbjct: 306 LVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGDDIDAA 365
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL + ++ +
Sbjct: 366 CGQLVGQVADRTRRAKKWQE 385
>gi|145628721|ref|ZP_01784521.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
22.1-21]
gi|144979191|gb|EDJ88877.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
22.1-21]
Length = 383
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 157/380 (41%), Positives = 215/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDKMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|258545517|ref|ZP_05705751.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
gi|258519217|gb|EEV88076.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
Length = 367
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 159/384 (41%), Positives = 217/384 (56%), Gaps = 24/384 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K +L + RE + + G R Q+ KWIY + DF M+D+S+ +R
Sbjct: 1 MADKINLFDLDREAMTAWFIDNG----EKPFRAKQLLKWIYHERVTDFDAMTDLSKPLRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + +P I+ +K + DGTRKW+ R IE V+IPE RGTLC+SSQ
Sbjct: 57 KLKNIAELRFPTIIADKTASDGTRKWIFR-----YDCGNSIEAVFIPEDDRGTLCISSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC TG RNLT EI++QV LA+ +L R ++N+
Sbjct: 112 GCALACPFCSTGHAGFNRNLTTGEIIVQVWLAKDILN----------CDRHGNNRVVTNV 161
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V+MGMGEPL NF+NV + + D SKRR+TLSTSG VP I + E + LA+S
Sbjct: 162 VLMGMGEPLVNFNNVLPATRLMMDDHAFGLSKRRVTLSTSGIVPAIHALREVTDLSLAVS 221
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301
LHA +++LRN +VP+N +Y L L+DAC Y + +T+EYVML+ +NDS A
Sbjct: 222 LHAPNDELRNQIVPVNARYGLAALLDACHQYVRHNGQHGGVTWEYVMLRDVNDSLEHARQ 281
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ++L+GIP KINLIPFN +PG Y CS + DI+ F + +GY + IR RG DI AA
Sbjct: 282 LAELLRGIPGKINLIPFNAFPGSRYQCSRRSDILAFQRYLTENGYVATIRKTRGEDIDAA 341
Query: 362 CGQLKSLSK----RIPKVPRQEMQ 381
CGQL K R K R+E++
Sbjct: 342 CGQLVGQFKDRLIRERKQTRKEVE 365
>gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
Length = 386
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 162/379 (42%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ M R ++ E L +G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 18 EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC
Sbjct: 74 KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNL EI+ QV A ++G+F R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 177
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + + E+I V LAISLH
Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++++R+ +VPIN+KY +EMLI++ Y +SN ++T EYVML IND A L
Sbjct: 238 APNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K+LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357
Query: 363 GQLKSLS-KRIPKVPRQEM 380
GQL R + +
Sbjct: 358 GQLAGDVIDRTKRTLEKRK 376
>gi|329123609|ref|ZP_08252169.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
gi|327469808|gb|EGF15273.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
Length = 390
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 157/380 (41%), Positives = 215/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 361 GQLAGDVIDRTKRTAMKRQF 380
>gi|68248968|ref|YP_248080.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae 86-028NP]
gi|81336620|sp|Q4QNH7|RLMN_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|68057167|gb|AAX87420.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
86-028NP]
Length = 390
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 157/380 (41%), Positives = 215/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 361 GQLAGDVIDRTKRTAMKRQF 380
>gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 393
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 155/380 (40%), Positives = 217/380 (57%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC
Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ ++PIN+KY +EML+D+ Y +SN ++T EYV+L +ND A L
Sbjct: 245 APNDELRDEIMPINKKYNIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K ++ +
Sbjct: 365 GQLAGDVIDRTKRTMEKRKF 384
>gi|312111725|ref|YP_003990041.1| radical SAM protein [Geobacillus sp. Y4.1MC1]
gi|311216826|gb|ADP75430.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y4.1MC1]
Length = 364
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 126/368 (34%), Positives = 204/368 (55%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + E+L+ +++ G R +QI++W+Y + + F M+++ + +R L+
Sbjct: 19 PSIYSLTFEQLKNWIIEQG----EKPFRATQIYEWLYQKRVTHFSEMTNLPKTLREKLSG 74
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF I + + ++ S DGT K+L IETV + ++CV++QVGC +
Sbjct: 75 HFDITTLKTLVKQTSKDGTMKFLFELH-----DGYSIETVLMRHNYGNSICVTTQVGCRI 129
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A EI+ QV+ + L + +IS+IV+MG
Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKELDE--------------QNERISSIVVMG 175
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP N+D + K L I + + GL+ R IT+STSG +P I + +E + V AISLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHAKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR L+PIN+ YPL L+DA R+Y + RR+TFEY + G+ND A L ++
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKT-GRRVTFEYGLFGGVNDQLEHAEQLAEL 294
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ +NLIP N P Y+ + ++ I F +K+ G + IR +G DI AACGQL
Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPREQIFAFERALKKHGINVTIRREQGHDIDAACGQL 354
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 355 RAKERKEE 362
>gi|118594986|ref|ZP_01552333.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
HTCC2181]
gi|118440764|gb|EAV47391.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
HTCC2181]
Length = 363
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 161/371 (43%), Positives = 218/371 (58%), Gaps = 14/371 (3%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L+ EL E L K G H R Q+ KWIY G DF M+D+++ R L
Sbjct: 3 NLLDFNLRELTEYLEKFG----HKPYRAKQLLKWIYQSGEHDFSQMTDLAKSFRQSLQTT 58
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I P I + +S DGTRKWLL G IE V+IPE RGTLC+SSQVGC+L
Sbjct: 59 SEIATPSIQLDHLSTDGTRKWLLDV-----GAKNGIEAVFIPETDRGTLCISSQVGCALE 113
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC TG Q RNLT+ EI+ Q+ LA +L + ++ R I+N+VMMGM
Sbjct: 114 CTFCSTGRQGFNRNLTSGEIVGQLWLANKMLRE-----QANYRLLAHEDRIITNVVMMGM 168
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N+++V +L + D S+RR+TLSTSG +P I ++ ++ V LAISLHA
Sbjct: 169 GEPLTNYNHVVHALEMMLDDHVYGLSRRRVTLSTSGLIPAIDKLRDDCPVSLAISLHAPD 228
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ LR+ +VPIN+KYPL+ L+ AC Y + +TFEYVML+G+NDS A L+K++K
Sbjct: 229 DKLRDEIVPINKKYPLQDLMAACIRYIEKAPRDFVTFEYVMLEGVNDSVDQAKALVKLVK 288
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
+P K NLIPFNP+P YLCS + I F + + +G + +R RG DI AACGQL
Sbjct: 289 NVPCKFNLIPFNPFPNSGYLCSSRSVINAFKQVLMDAGLVATVRKTRGDDIDAACGQLAG 348
Query: 368 LSKRIPKVPRQ 378
+ K +
Sbjct: 349 QVQDKTKRTMR 359
>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
Length = 372
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 170/380 (44%), Positives = 224/380 (58%), Gaps = 20/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ +L+ + R LE +G R Q+ +WIY R + DF M+D+++ +R L
Sbjct: 4 SRTNLLNLDRAGLEAFFTCLG----EKPFRARQVLRWIYQRFVTDFSAMTDLNKSLRKRL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PEIV + S DGTRKWLLR G IETV+IPE+ RGTLC+SSQVGC
Sbjct: 60 AESAVISLPEIVQQHRSADGTRKWLLRIH-----GNNCIETVFIPEEDRGTLCISSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L CSFC TG Q RNL EI+ Q+ LA +LG P E R I+N+VM
Sbjct: 115 ILDCSFCATGKQGFNRNLAISEIIGQLWLANKILGRTPKGE-----------RIITNVVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++++ D S RR+TLST+G VP I R+ V LA+SLH
Sbjct: 164 MGMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAIDRLRAVCPVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ LVP+N+KYPLE L+ ACR Y R +TFEYVML +NDS A L++
Sbjct: 224 APTDKLRDELVPLNKKYPLEDLLSACRRYVAGDRRRAVTFEYVMLADVNDSFSHARALLR 283
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+PAK+NLIPFNP+PG Y SD + I F E + R G + R RG DI AACGQ
Sbjct: 284 LLQGLPAKVNLIPFNPFPGSVYRRSDAETIDRFREKLLRGGIMTVTRKTRGDDIAAACGQ 343
Query: 365 LKSLSKRIPKVPRQEMQITG 384
L + + ++ G
Sbjct: 344 LAGQVQDRTRRTMDRQRLVG 363
>gi|89256367|ref|YP_513729.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica LVS]
gi|115314812|ref|YP_763535.1| Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
holarctica OSU18]
gi|167010712|ref|ZP_02275643.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
holarctica FSC200]
gi|254367703|ref|ZP_04983724.1| radical SAM superfamily protein; probable Fe-S-cluster
oxidoreductase [Francisella tularensis subsp. holarctica
257]
gi|122325172|sp|Q0BLY6|RLMN_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|122999743|sp|Q2A3H3|RLMN_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|89144198|emb|CAJ79467.1| Radical SAM superfamily protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129711|gb|ABI82898.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253514|gb|EBA52608.1| radical SAM superfamily protein; probable Fe-S-cluster
oxidoreductase [Francisella tularensis subsp. holarctica
257]
Length = 370
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 156/382 (40%), Positives = 228/382 (59%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQ+GC
Sbjct: 60 KDKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+
Sbjct: 224 TPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ ++ G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365
>gi|307246190|ref|ZP_07528272.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255171|ref|ZP_07536989.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259608|ref|ZP_07541333.1| hypothetical protein appser11_14070 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853125|gb|EFM85348.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862044|gb|EFM94020.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866544|gb|EFM98407.1| hypothetical protein appser11_14070 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 393
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 154/380 (40%), Positives = 217/380 (57%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC
Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ ++PIN+KY ++ML+D+ Y +SN ++T EYV+L +ND A L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K ++ +
Sbjct: 365 GQLAGDVIDRTKRTMEKRKF 384
>gi|253575779|ref|ZP_04853114.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844822|gb|EES72835.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
Length = 348
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 130/368 (35%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + EEL+E + G P R QI+ W+YV+ + F M+++S+ +R L
Sbjct: 2 KPFIYDYTLEELQEWAVSQGEPA----FRGGQIFDWLYVKRVSSFDEMTNLSKALRQKLA 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F+ + + + + S DGT K+L IETV + ++CV++QVGC
Sbjct: 58 DEFAFVTLQEITKLESKDGTVKFLFGLH-----DDHAIETVIMKHNYGNSICVTTQVGCK 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNLT EI+ QV+ A+ +L + G ++S+IV+M
Sbjct: 113 VGCTFCASTLGGLKRNLTPGEIVAQVVQAQKILD--------------AKGERVSSIVIM 158
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N+D K L I GL+ +R IT+STSG VPNI R +E + LAIS+H
Sbjct: 159 GTGEPFENYDATMKFLRIMIHEKGLNIGQRHITVSTSGIVPNIYRFADENTQINLAISIH 218
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ L+P+NR++P + +++A R+Y + RRITFEY ++ G+ND P A L
Sbjct: 219 APNDALRSKLMPVNRRFPFDDVMEALRYYIAKT-GRRITFEYALIGGVNDQPEHAEELAD 277
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++K + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ
Sbjct: 278 VIKDMLCHVNLIPVNYVPERKYVRTSRNDIFKFQRILADKGINVTIRREQGHDIAAACGQ 337
Query: 365 LKSLSKRI 372
L++
Sbjct: 338 LRAKHMES 345
>gi|165976692|ref|YP_001652285.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|303250645|ref|ZP_07336842.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252906|ref|ZP_07534795.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307261750|ref|ZP_07543416.1| hypothetical protein appser12_13090 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263937|ref|ZP_07545541.1| hypothetical protein appser13_13460 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|205829706|sp|B0BQK6|RLMN_ACTPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|165876793|gb|ABY69841.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302650633|gb|EFL80792.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859695|gb|EFM91719.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306868568|gb|EFN00379.1| hypothetical protein appser12_13090 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870802|gb|EFN02542.1| hypothetical protein appser13_13460 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 393
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 154/380 (40%), Positives = 217/380 (57%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC
Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ ++PIN+KY ++ML+D+ Y +SN ++T EYV+L +ND A L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K ++ +
Sbjct: 365 GQLAGDVIDRTKRTMEKRKF 384
>gi|293391771|ref|ZP_06636105.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952305|gb|EFE02424.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 379
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 153/378 (40%), Positives = 213/378 (56%), Gaps = 23/378 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++ +R L
Sbjct: 11 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 67 KTMAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 120
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 170
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VP+N+KY ++ LID+ Y +SN ++T EYVML IND A L
Sbjct: 231 APNDELRDEIVPLNKKYNIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC
Sbjct: 291 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350
Query: 363 GQLKSLS-KRIPKVPRQE 379
GQL R + +++
Sbjct: 351 GQLAGDVIDRTKRTAQKK 368
>gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
Length = 379
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 146/379 (38%), Positives = 211/379 (55%), Gaps = 19/379 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ R+ L E + G H R Q+++W++ +G+ DF+ MSD+++ +R L +
Sbjct: 8 TNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQFLRE 63
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
H I ++ E+ S DGT KWL G +E V+IPE R TLCVSSQ GC++
Sbjct: 64 HAHIAALPVLSEQRSADGTVKWLFDV-----GQGNAVEAVFIPEAQRNTLCVSSQAGCAV 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL EIL Q+ A + + +P R ISN+VMMG
Sbjct: 119 NCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMR--------RELGLPGGERAISNVVMMG 170
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V LA+SLHA
Sbjct: 171 MGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVALAVSLHAP 230
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR+ LVP+NRKYPL L+ AC+ Y + ITFEY ML G+ND+P A +L++++
Sbjct: 231 VDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAEDLVRLV 290
Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ + K NLIPFNP+P S + F++ + +G + +R RG DI AACGQ
Sbjct: 291 RAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDDIDAACGQ 350
Query: 365 LKSLSKRIPKVPRQEMQIT 383
L + + + Q
Sbjct: 351 LAGEVQDRTRRVIRMQQAA 369
>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
Length = 376
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 168/374 (44%), Positives = 224/374 (59%), Gaps = 20/374 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ +++ E L R QI +WI+ G+ DF M+++ + +R L
Sbjct: 4 QKVNLLNYNYQQMRELLSSW----DEQPYRAQQIIQWIHQAGLTDFAKMTNLGKTLREKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+Q I PEI+ + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC
Sbjct: 60 SQLSCIKLPEIIACQKSNDGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC T Q RNLT EI+ QV LA L + ++++N+VM
Sbjct: 115 ALNCSFCSTAKQGFNRNLTTAEIIGQVWLAVRELS----------QSQGNHDKRVTNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV ++ I D SKRR+TLSTSG +P++ R+ E V LA+SLH
Sbjct: 165 MGMGEPLLNFDNVVSAMDIMMDDFAYGLSKRRVTLSTSGVLPDLERLREVSPVALAVSLH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LRN LVPIN+KYPL L+ C+ Y R++TFEYVMLKG+ND P A+ LIK
Sbjct: 225 APNDELRNELVPINKKYPLAQLMALCKIYFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIK 284
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ IPAK+NLIPFNP+P +Y S Q+ I F E + G ++ R RG DI AACGQ
Sbjct: 285 LLRNIPAKVNLIPFNPFPMTQYERSSQETIDAFREKLMAHGINTITRKTRGDDIDAACGQ 344
Query: 365 LKSLSK-RIPKVPR 377
L K R + R
Sbjct: 345 LAGEVKDRTTRSQR 358
>gi|301169067|emb|CBW28664.1| predicted enzyme [Haemophilus influenzae 10810]
Length = 383
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 214/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
Length = 379
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 146/379 (38%), Positives = 211/379 (55%), Gaps = 19/379 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ R+ L E + G H R Q+++W++ +G+ DF+ MSD+++ +R L +
Sbjct: 8 TNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQFLRE 63
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
H I ++ E+ S DGT KWL G +E V+IPE R TLCVSSQ GC++
Sbjct: 64 HAHIAALPVLSEQRSADGTVKWLFDV-----GQGNAVEAVFIPEAQRNTLCVSSQAGCAV 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL EIL Q+ A + + +P R ISN+VMMG
Sbjct: 119 NCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMR--------RELGLPGGERAISNVVMMG 170
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V LA+SLHA
Sbjct: 171 MGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVALAVSLHAP 230
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR+ LVP+NRKYPL L+ AC+ Y + ITFEY ML G+ND+P A +L++++
Sbjct: 231 VDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAQDLVRLV 290
Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ + K NLIPFNP+P S + F++ + +G + +R RG DI AACGQ
Sbjct: 291 RAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDDIDAACGQ 350
Query: 365 LKSLSKRIPKVPRQEMQIT 383
L + + + Q
Sbjct: 351 LAGEVQDRTRRVIRMQQAA 369
>gi|32035054|ref|ZP_00135120.1| COG0820: Predicted Fe-S-cluster redox enzyme [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208740|ref|YP_001053965.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae L20]
gi|205829705|sp|A3N1S4|RLMN_ACTP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|126097532|gb|ABN74360.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 393
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 154/380 (40%), Positives = 217/380 (57%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC
Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGV----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ ++PIN+KY ++ML+D+ Y +SN ++T EYV+L +ND A L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K ++ +
Sbjct: 365 GQLAGDVIDRTKRTMEKRKF 384
>gi|307250523|ref|ZP_07532468.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307257327|ref|ZP_07539097.1| hypothetical protein appser10_13250 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306857465|gb|EFM89576.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306864177|gb|EFM96090.1| hypothetical protein appser10_13250 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 393
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 154/380 (40%), Positives = 217/380 (57%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC
Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGV----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ ++PIN+KY ++ML+D+ Y +SN ++T EYV+L +ND A L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K ++ +
Sbjct: 365 GQLAGDVIDRTKRTMEKRKF 384
>gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
Length = 395
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 153/380 (40%), Positives = 221/380 (58%), Gaps = 15/380 (3%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+GM ++EL + +G R +Q+ KWIY G+ DF M++IS+++++ L
Sbjct: 18 KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQYKL 73
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ ++ P + ++ S DGTRKW+ + V I + R TLC+SSQVGC
Sbjct: 74 HEVACVVPPTVKYKEFSQDGTRKWVFEVAGGSLVETVLIPADDGKQFGRKTLCISSQVGC 133
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q R+LT EI+ Q+ +A + + +++N+VM
Sbjct: 134 ALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYME--------NVPPTERENRVTNVVM 185
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N+D V S+S+ D SKRR+TLSTSG VP + + ++I V LAISLH
Sbjct: 186 MGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLH 245
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPRDALN 301
A +++LRN LVPIN+KYPL+ LI A + Y + + IT EYVML G+NDS A
Sbjct: 246 APNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQ 305
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+ +LK +P+KINLIPFNP+P Y S I FS + ++G+ IR RG DI AA
Sbjct: 306 LVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGDDIDAA 365
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL + ++ +
Sbjct: 366 CGQLVGQVADRTRRAKKWQE 385
>gi|90417489|ref|ZP_01225412.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
HTCC2207]
gi|90330730|gb|EAS46009.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
HTCC2207]
Length = 392
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 159/381 (41%), Positives = 224/381 (58%), Gaps = 22/381 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + + L +G R R +QI KWI+ GI D M++IS+ +R L
Sbjct: 19 KTNLLGLSASRIGDFLESLG----EKRFRGTQILKWIHQYGIDDLNEMTNISKSLRESLA 74
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ PE+V + S DGTRKWL++ G IE VYIPE+ RGTLCVSSQ+GC+
Sbjct: 75 DVAEVVMPEVVSCQDSVDGTRKWLIKV-----DGGSCIEMVYIPERDRGTLCVSSQIGCA 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LT EI+ Q+ +A F R+++N+VMM
Sbjct: 130 LDCSFCATGKQGFARDLTTAEIIGQLWIAAKSFDQFDTKNP----------RRVTNVVMM 179
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NF+NV ++S+ D SKRR+TLST+G VP + ++G+ V LAISLHA
Sbjct: 180 GMGEPLMNFNNVVDAMSLMMDDNAYGLSKRRVTLSTAGVVPELDKLGDVSDVSLAISLHA 239
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303
+++LRN LVPINRKYPL I + + Y N R++T EY ++ +ND A L
Sbjct: 240 PNDELRNQLVPINRKYPLVDFIGSAKRYLDKMPDNRRKVTVEYTLMDRVNDRDEHAKELS 299
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+ +P KINLIPFNP+PG EY + + F + ++ GY+ +RT RG DI AACG
Sbjct: 300 VLLRDLPCKINLIPFNPFPGSEYKKVTKVALNRFRDILQNDGYTVTVRTTRGDDIAAACG 359
Query: 364 QLKSL-SKRIPKVPRQEMQIT 383
QL + R + R + ++
Sbjct: 360 QLAGEVNDRTKRQERYKKRLQ 380
>gi|162147642|ref|YP_001602103.1| hypothetical protein GDI_1858 [Gluconacetobacter diazotrophicus PAl
5]
gi|209542271|ref|YP_002274500.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786219|emb|CAP55801.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209529948|gb|ACI49885.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
PAl 5]
Length = 404
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 180/369 (48%), Positives = 250/369 (67%), Gaps = 14/369 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ REEL +AL++IG RT Q+W WIY +G+ DF MS I++ ++ L
Sbjct: 46 RRELVGLSREELTQALVEIG----EKPFRTKQLWHWIYHQGVTDFARMSSIAKPLQAKLA 101
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + P+ + S D TRK+L RF V I + RG +C+SSQVGC+
Sbjct: 102 ERFVVGRPDAAMVQTSTDETRKFLFRFRDGQEAETVYIPD---RREDRGAVCISSQVGCT 158
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV+M
Sbjct: 159 LSCTFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIVLM 211
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N++N+ K++ I D G+ S+RRITLSTSG +P + + G E+G+ LAISLHA
Sbjct: 212 GMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGSELGINLAISLHA 271
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V NDLR+ +VP+NRKYP+E LI ACR YP SNARRITFEY+ML+G+NDS +A L+++
Sbjct: 272 VRNDLRDEIVPLNRKYPIEDLIAACRRYPTASNARRITFEYIMLRGVNDSEAEARELVRL 331
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ GIPAK+NLIPFNPWPG Y S ++ + F++ + +G++SPIR PRG DILAACGQL
Sbjct: 332 IAGIPAKVNLIPFNPWPGSAYKPSTREQLAKFAQIVMDAGFASPIRMPRGRDILAACGQL 391
Query: 366 KSLSKRIPK 374
++ S+R +
Sbjct: 392 RTESERERR 400
>gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis
DSM 9187]
gi|259491997|sp|C4LC34|RLMN_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187]
Length = 373
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 155/382 (40%), Positives = 209/382 (54%), Gaps = 22/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ R L R QI KWIY G DF M+++++ +R L
Sbjct: 4 NKVNLLDFDRNALRAFFAD---ELGEKAFRADQIMKWIYHFGCDDFSQMTNVNKALREKL 60
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PEI E+ S DGT KW +R E+ETVYIPE R TLCVSSQVGC
Sbjct: 61 ARIAEIRAPEISTEQRSSDGTIKWAMRVGD------QEVETVYIPEADRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC TG Q RNLT EI+ QV A ++G + R I+N+VM
Sbjct: 115 ALECKFCSTGQQGFNRNLTVSEIIGQVWRAAQVVG----------FPKDTGKRVITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N N+ +LS+ + G SKRR+T+STSG VP + ++G+ I V LAISLH
Sbjct: 165 MGMGEPLLNLSNLVPALSLMMEDFGFGLSKRRVTVSTSGVVPALDKLGDMIDVALAISLH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A ++ LR+ ++PIN KY ++ + + + Y SN R+T EYV+L +ND A L
Sbjct: 225 APNDKLRSEIMPINDKYNIQEFLGSVQRYLSKSNANHGRVTVEYVLLDHVNDDMEHAREL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P+KINLIPFNP+P Y + FS+ + GY+ +R RG DI AAC
Sbjct: 285 AELLKDTPSKINLIPFNPFPSNPYGKPSNSRVDRFSKVLMEYGYTVIVRKTRGDDIDAAC 344
Query: 363 GQLKSLS-KRIPKVPRQEMQIT 383
GQL R + ++ MQ
Sbjct: 345 GQLVGDVIDRTKRTMKKRMQEQ 366
>gi|52425971|ref|YP_089108.1| hypothetical protein MS1916 [Mannheimia succiniciproducens MBEL55E]
gi|81386653|sp|Q65R87|RLMN_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|52308023|gb|AAU38523.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 371
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 156/382 (40%), Positives = 215/382 (56%), Gaps = 22/382 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R
Sbjct: 1 MTEKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLRD 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I PEI E+ S DGT KW ++ +IETVYIPE R TLCVSSQV
Sbjct: 57 KLKAVAEIKAPEIAVEQRSADGTIKWAMQVGD------QQIETVYIPEADRATLCVSSQV 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+
Sbjct: 111 GCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGEFGVTGI----------RPITNV 160
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N NV ++ + D SKRR+TLSTSG VP + + I V LAIS
Sbjct: 161 VMMGMGEPLLNVANVVPAMELMLDDFAYGLSKRRVTLSTSGVVPALDNLSGMIDVALAIS 220
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
LHA +++LR+ +VPIN+KY ++MLID+ Y +SN ++T EYVML +NDS A
Sbjct: 221 LHAPNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSIEHAH 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI A
Sbjct: 281 QLAEVLKNTPCKINLIPWNPFPQAPYGKSSNTRVDKFQKTLMEYGFTVIVRKTRGDDIDA 340
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL K + Q
Sbjct: 341 ACGQLAGDVIDRTKRTAAKRQF 362
>gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 415
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 157/379 (41%), Positives = 219/379 (57%), Gaps = 23/379 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 47 EKINLLNLNRQEMRELFAEMG----EKPFRADQLMKWIYHFGEENFDNMSNINKVLREKL 102
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC
Sbjct: 103 KRIAEIKAPEVAVEQRSADGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 156
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNL+ EI+ QV A ++G+F R I+N+VM
Sbjct: 157 ALACTFCSTAQQGFNRNLSVAEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAISLH
Sbjct: 207 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 266
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ LVPIN+KY ++ML+D+ Y +SN ++T EYVML +NDS A L
Sbjct: 267 APNDELRDELVPINKKYNIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDSTDHAHQL 326
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC
Sbjct: 327 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 386
Query: 363 GQLKSLS-KRIPKVPRQEM 380
GQL R + +
Sbjct: 387 GQLAGDVIDRTKRTLEKRK 405
>gi|89095332|ref|ZP_01168250.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
gi|89080407|gb|EAR59661.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
Length = 371
Score = 371 bits (953), Expect = e-101, Method: Composition-based stats.
Identities = 156/379 (41%), Positives = 225/379 (59%), Gaps = 20/379 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+G+ ++E +IG + R +Q+ KWI+ G F M++IS+ +R L
Sbjct: 6 KKVNLLGLSPAKMEAFFDEIG----EKKFRATQVLKWIHQLGATSFDEMTNISKALRAKL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE++ EK S DGTRKW++R +E V IP+ R TLCVSSQVGC
Sbjct: 62 EEVAEIREPEVLLEKTSKDGTRKWVIRT-----DSGSSVEAVLIPDGERKTLCVSSQVGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q NLT EI+ Q+ +A G++ + R +SN+V+
Sbjct: 117 SLDCSFCSTGKQGFNSNLTTAEIIGQLRIAIRSYGEYNT----------TSQRVVSNVVL 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV ++++ + SKRR+TLST+G VP I ++ E V LAISLH
Sbjct: 167 MGMGEPLMNFDNVVDAITLMMEDNAYCLSKRRVTLSTAGVVPAIDKLREVTDVSLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
A ++DLR+ILVPIN++YP++ L+ AC Y N +R IT EY ++ G+ND P A L+
Sbjct: 227 APNDDLRDILVPINKRYPIKELVAACNRYLDNLNDKRVITVEYTLINGVNDKPEHAKQLL 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
KIL+ +P+K+N+IPFNP+P Y ++ I+ F E I G + +R RG +I AACG
Sbjct: 287 KILRRMPSKLNIIPFNPFPNSGYERPSEERILAFKEIIVHGGIVTTVRRTRGDEIDAACG 346
Query: 364 QLKSLSKRIPKVPRQEMQI 382
QL + ++ + +
Sbjct: 347 QLVGQVADRTRRSQKYINV 365
>gi|262371647|ref|ZP_06064926.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
junii SH205]
gi|262311672|gb|EEY92757.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
junii SH205]
Length = 411
Score = 371 bits (953), Expect = e-101, Method: Composition-based stats.
Identities = 165/382 (43%), Positives = 222/382 (58%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+GM R ELE ++G + R Q+ KWI+ + DF M++IS ++R L
Sbjct: 29 KKVNLLGMSRTELEAFFEELG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKL 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSS 120
+ I PE+V S DGTRKW+ R G +ETV IP +R TLC+SS
Sbjct: 85 EKICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISS 141
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT EI+ Q+ +A + + + R ++
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYME--------DVPVAERERTVT 193
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V S+ + D SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 253
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSP 296
ISLHA +++LRN LVPIN+KYPL LI AC+ Y R +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYLAKDGNESARRHVTIEYVMLEGVNDQP 313
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG
Sbjct: 314 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGD 373
Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 374 DIDAACGQLVGQVADRTRRAEQ 395
>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
gi|122941195|sp|Q0A989|RLMN_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 157/376 (41%), Positives = 221/376 (58%), Gaps = 23/376 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L+ + R+ L+ +G R +Q+ KW++ R + F+ M+DIS+ +R L +
Sbjct: 2 NLLDLDRQALKRLFADLG----EKPFRATQVLKWVHQRRVTGFEEMTDISKALRARLAER 57
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
++ PE++ E++S DGTRKWLLR G IETV+IP+ RGTLCVSSQVGC+L
Sbjct: 58 VALRLPEVLAEQVSEDGTRKWLLRV-----DGGQAIETVFIPDSGRGTLCVSSQVGCALD 112
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC T Q RNL+ EI+ Q +A L G +I+N+V MGM
Sbjct: 113 CSFCSTAQQGFNRNLSTAEIIGQYYVAYDQL--------------TGTGEQITNVVFMGM 158
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N + V ++ + +D SKR++T+STSG V + R+ E+ V LA+SLHA +
Sbjct: 159 GEPLLNLEAVIPAVRLMTDDDAYGLSKRKVTISTSGVVTMLERMREQTDVSLAVSLHAPN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
N LR+ LVPINRK+PLE LI AC Y RRIT+EYVML G+ND A L ++L
Sbjct: 219 NALRDELVPINRKHPLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARLLG 278
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
IP+K+NLIPFNP+PG Y CS + I+ F ++ G ++ R RG DI ACGQL
Sbjct: 279 DIPSKVNLIPFNPFPGARYRCSPRGRILRFVRILQSHGLTATTRVTRGQDIDGACGQLVG 338
Query: 368 LSKRIPKVPRQEMQIT 383
+ + ++ +Q
Sbjct: 339 KVQDRTRRQQRLVQRE 354
>gi|109899434|ref|YP_662689.1| hypothetical protein Patl_3129 [Pseudoalteromonas atlantica T6c]
gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 380
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 214/379 (56%), Gaps = 22/379 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L
Sbjct: 11 KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PEI ++ + DGT K+ LR G E+ETV+IP++ R TLCVSSQVGC+
Sbjct: 67 AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL+ EI+ QV G+ S R I+N+VMM
Sbjct: 122 LECTFCSTAQQGFNRNLSVSEIIGQVWRV----------ATTIGLSNDSAKRPITNVVMM 171
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA
Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
+ LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L
Sbjct: 232 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L P KINLIPFNP+PG Y S I F++ + G +R RG DI AACG
Sbjct: 292 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351
Query: 364 QLKSL-SKRIPKVPRQEMQ 381
QL R ++ +++M+
Sbjct: 352 QLVGDVVDRTKRMLKKQMK 370
>gi|205829853|sp|Q15R53|RLMN_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 376
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 214/379 (56%), Gaps = 22/379 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L
Sbjct: 7 KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PEI ++ + DGT K+ LR G E+ETV+IP++ R TLCVSSQVGC+
Sbjct: 63 AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL+ EI+ QV G+ S R I+N+VMM
Sbjct: 118 LECTFCSTAQQGFNRNLSVSEIIGQVWRV----------ATTIGLSNDSAKRPITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA
Sbjct: 168 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
+ LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L
Sbjct: 228 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 287
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L P KINLIPFNP+PG Y S I F++ + G +R RG DI AACG
Sbjct: 288 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 347
Query: 364 QLKSL-SKRIPKVPRQEMQ 381
QL R ++ +++M+
Sbjct: 348 QLVGDVVDRTKRMLKKQMK 366
>gi|50083794|ref|YP_045304.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1]
gi|81393776|sp|Q6FEM6|RLMN_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme
[Acinetobacter sp. ADP1]
Length = 414
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 172/393 (43%), Positives = 225/393 (57%), Gaps = 32/393 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+GM R ELE+ +IG + R QI KWI+ + D M++IS ++R L
Sbjct: 32 SKVNLLGMSRIELEQFFEQIG----EKKFRAGQIMKWIHQYFVTDLAEMTNISGKLRTKL 87
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSS 120
Q I PE+V S DGTRKW+ R G +ETV IP SR TLC+SS
Sbjct: 88 EQVCEIKAPEVVHRHYSKDGTRKWVFRV---GEGSGSLVETVLIPAEDKTGSRKTLCISS 144
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT EI+ Q+ +A +E + + R ++
Sbjct: 145 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWVANQ--------SYVEDVPVAERTRAVT 196
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL NF V S+SI D SKRR+TLSTSG VP I ++ EE+ V LA
Sbjct: 197 NVVMMGMGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAEELDVALA 256
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSP 296
ISLHA +N LR+ LVPIN+KYPLE LI A + Y + +T EYVML G+ND P
Sbjct: 257 ISLHAPNNPLRDELVPINKKYPLEQLIAAAQRYITKDGNESARKHVTIEYVMLDGVNDHP 316
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG
Sbjct: 317 EHAQQLVKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIMAFQKTLSDAGFVCTIRQTRGD 376
Query: 357 DILAACGQL---------KSLSKRIPKVPRQEM 380
DI AACGQL ++ + RQE+
Sbjct: 377 DIDAACGQLVGQVADRTRRAEQWKKKVAERQEI 409
>gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1]
gi|205829632|sp|A2SHB8|RLMN_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 394
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 145/384 (37%), Positives = 211/384 (54%), Gaps = 25/384 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +L+ + L ++G R R +Q+++WI+ +G DF MSD+++ +R
Sbjct: 1 MTAANLLEFDLDALAAFCEQLG----EKRFRATQLFRWIHQKGQSDFAQMSDLAKSLREK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + ++ E +S DGT KWL GG +ETV+IPE RGTLC+SSQ G
Sbjct: 57 LAGRAVVRPLAVLSEHVSADGTVKWLFDV-----GGGNAVETVFIPENDRGTLCISSQAG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG Q RNL+ EI+ Q+ A L + + R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLR----------ARLGTTERVISNVV 161
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N+ + +L + D G S+RR+T+STSG VP I R+ E+ V LA+SL
Sbjct: 162 MMGMGEPLQNYAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCPVALAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ LR+ LVP+NRKYP+ L++AC+ Y + ITFEY ML G+NDS A L+
Sbjct: 222 HAPTDALRDDLVPLNRKYPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEAQARELL 281
Query: 304 KI------LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
++ + +P KINLIPFNP+P S + F++ + G + +R RG D
Sbjct: 282 RLVGERGPVGRVPCKINLIPFNPFPASGLTRSSVARVQAFAQLLVDGGLVTTVRRTRGDD 341
Query: 358 ILAACGQLKSLSKRIPKVPRQEMQ 381
I AACGQL + + +
Sbjct: 342 IDAACGQLAGEVQDRTNAQARMRR 365
>gi|332284656|ref|YP_004416567.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7]
gi|330428609|gb|AEC19943.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7]
Length = 386
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 152/381 (39%), Positives = 215/381 (56%), Gaps = 12/381 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ + +L+G+ L + + + G R Q+ +W++ RG F M+D+++E
Sbjct: 1 MSINESINLLGLDTPALTDLVGQWG----GKPFRAKQLQRWVHQRGADSFDDMTDLAREF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +H SI P + E+ S DGTRKWL G +E V+IPE RGTLC+SS
Sbjct: 57 RLQLAEHCSIAAPPVSIEQRSADGTRKWLFDV-----GKNNAVEAVFIPEDDRGTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG---DFPGCEDIEGMVIPSVGR 177
Q GC++ C FC TG Q RNLT EI+ Q+ AR +L E P R
Sbjct: 112 QAGCTVACPFCSTGYQGFNRNLTTAEIIGQLWHARRVLQSDMQSARTVSTETQTAPDPAR 171
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
ISN+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+G + V
Sbjct: 172 VISNVVMMGMGEPLLNYDQVLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLGRDCPV 231
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLHA ++ LR+ LVP+NRK+PL L+ AC Y + ITFEY+ML G+ND+ +
Sbjct: 232 ALAVSLHAPNDALRDKLVPLNRKHPLAELLAACNRYLEHAPRDFITFEYIMLDGVNDTDQ 291
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A LI I + + K NLIPFNP+P S + F++ + +G + +R RG D
Sbjct: 292 HARELITIAQQVRCKFNLIPFNPFPQSGLKRSPAARVRLFAQRLMDAGIVTTVRKTRGDD 351
Query: 358 ILAACGQLKSLSKRIPKVPRQ 378
I AACGQL K ++ ++
Sbjct: 352 IAAACGQLAGDVKDRTRISQR 372
>gi|145638726|ref|ZP_01794335.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
gi|145272321|gb|EDK12229.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
Length = 383
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 214/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|145640315|ref|ZP_01795899.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
R3021]
gi|145274901|gb|EDK14763.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
22.4-21]
Length = 383
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 157/380 (41%), Positives = 215/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++MLID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|156502452|ref|YP_001428517.1| radical SAM enzyme, Cfr family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|205829764|sp|A7NC58|RLMN_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|156253055|gb|ABU61561.1| radical SAM enzyme, Cfr family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 370
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 157/378 (41%), Positives = 229/378 (60%), Gaps = 24/378 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L
Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQ+GC
Sbjct: 60 KDKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+
Sbjct: 224 TPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283
Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343
Query: 363 GQLKSLSKRIPKVPRQEM 380
GQL + K R+++
Sbjct: 344 GQLAGDV--MDKTNRKQI 359
>gi|145631818|ref|ZP_01787577.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
R3021]
gi|144982537|gb|EDJ90091.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
R3021]
Length = 383
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 158/380 (41%), Positives = 215/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPINRKY ++MLID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINRKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|226954474|ref|ZP_03824938.1| radical SAM protein [Acinetobacter sp. ATCC 27244]
gi|294651490|ref|ZP_06728803.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
gi|226834823|gb|EEH67206.1| radical SAM protein [Acinetobacter sp. ATCC 27244]
gi|292822640|gb|EFF81530.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
Length = 413
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 164/382 (42%), Positives = 221/382 (57%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+GM R ELE+ +G + R Q+ KWI+ + DF M++IS ++R L
Sbjct: 31 NKVNLLGMSRAELEKFFEDLG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKL 86
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSS 120
+ I PE+V S DGTRKW+ R G +ETV IP +R TLC+SS
Sbjct: 87 EKICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISS 143
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT EI+ Q+ +A + + + R ++
Sbjct: 144 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYME--------EVPVAERERTVT 195
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V S+ + D SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 196 NVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 255
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSP 296
ISLHA +++LRN LVPIN+KYPL+ LI AC+ Y R +T EYVML G+ND P
Sbjct: 256 ISLHAPNDELRNELVPINKKYPLQQLIAACQRYLAKDGNESARRHVTIEYVMLDGVNDQP 315
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG
Sbjct: 316 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGD 375
Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 376 DIDAACGQLVGQVADRTRRAEQ 397
>gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
Length = 372
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 149/369 (40%), Positives = 204/369 (55%), Gaps = 23/369 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ E L +G R R Q+++WI+ +G DF MSD+++ +R L
Sbjct: 3 VNLLDFDLEGLAAFCDSLG----EKRFRAVQLFRWIHQKGESDFDKMSDLAKSLRGKLAG 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ ++ E +S DGT KWL GG +ETVYIPE RGTLCVSSQ GC++
Sbjct: 59 AAVVESLPVISEHVSADGTTKWLFDV-----GGGNAVETVYIPEDDRGTLCVSSQAGCAV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q RNL+ EI+ Q+ A L P R I N+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLSTGEIIAQLRYAEHRLR------------GPDGQRVIDNVVMMG 161
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ V +L + D G S+RR+T+STSG V I R+ E+ V LA+SLHA
Sbjct: 162 MGEPLQNYAAVVPALRVMLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCPVALAVSLHAP 221
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR++LVPINRK +E L+DAC Y + ITFEY ML G+ND+P A L+ ++
Sbjct: 222 DDALRDMLVPINRKDGIEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQAQQLVHLV 281
Query: 307 KGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ P K NLIPFNP+P S ++ + F++ ++ +G + IR RG DI AACGQ
Sbjct: 282 RRRRVPCKFNLIPFNPFPESGLKRSPRERVTAFAKVLQDAGIVTTIRKVRGDDIDAACGQ 341
Query: 365 LKSLSKRIP 373
L +
Sbjct: 342 LAGEVQDRT 350
>gi|169634407|ref|YP_001708143.1| hypothetical protein ABSDF3005 [Acinetobacter baumannii SDF]
gi|169797246|ref|YP_001715039.1| hypothetical protein ABAYE3266 [Acinetobacter baumannii AYE]
gi|184156828|ref|YP_001845167.1| Fe-S-cluster redox protein [Acinetobacter baumannii ACICU]
gi|213155960|ref|YP_002318005.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057]
gi|215484687|ref|YP_002326922.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294]
gi|239500768|ref|ZP_04660078.1| UPF0063 protein yfgB [Acinetobacter baumannii AB900]
gi|260556128|ref|ZP_05828347.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii ATCC 19606]
gi|301346479|ref|ZP_07227220.1| UPF0063 protein yfgB [Acinetobacter baumannii AB056]
gi|301510159|ref|ZP_07235396.1| UPF0063 protein yfgB [Acinetobacter baumannii AB058]
gi|301594216|ref|ZP_07239224.1| UPF0063 protein yfgB [Acinetobacter baumannii AB059]
gi|332851249|ref|ZP_08433322.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6013150]
gi|332866104|ref|ZP_08436832.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6013113]
gi|332873243|ref|ZP_08441200.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6014059]
gi|205829659|sp|B2I3E2|RLMN_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829701|sp|B0V4U0|RLMN_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829716|sp|A3M208|RLMN_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807143|sp|B7H072|RLMN_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807144|sp|B7I5G4|RLMN_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807145|sp|B0VKS2|RLMN_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|169150173|emb|CAM88067.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
gi|169153199|emb|CAP02291.1| conserved hypothetical protein [Acinetobacter baumannii]
gi|183208422|gb|ACC55820.1| predicted Fe-S-cluster redox enzyme [Acinetobacter baumannii ACICU]
gi|193076307|gb|ABO10952.2| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC
17978]
gi|213055120|gb|ACJ40022.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057]
gi|213987723|gb|ACJ58022.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294]
gi|260410183|gb|EEX03482.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii ATCC 19606]
gi|332730129|gb|EGJ61456.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6013150]
gi|332734850|gb|EGJ65943.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6013113]
gi|332738755|gb|EGJ69625.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6014059]
Length = 410
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 167/382 (43%), Positives = 224/382 (58%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L
Sbjct: 28 EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSS 120
Q I PE+V S DGTRKW+ R G +ETV IP SR TLC+SS
Sbjct: 84 EQICEIKAPEVVHRHYSKDGTRKWVFRV---GEGSGSLVETVLIPAEDKTGSRKTLCISS 140
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + + R ++
Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYME--------EVPVAERERSVT 192
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 193 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 252
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSP 296
ISLHA +++LRN LVPIN+KYPL LI AC+ Y + +T EYVML+G+ND P
Sbjct: 253 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 312
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG
Sbjct: 313 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 372
Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 373 DIDAACGQLVGQVADRTRRAEQ 394
>gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
Length = 345
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 153/362 (42%), Positives = 217/362 (59%), Gaps = 26/362 (7%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ EL+E + +G R QI +W+Y + + F M+++S+E R LL++
Sbjct: 5 KDLTLPELKEFVTSLGFE----PYRAKQIAQWLYKKRVSSFDQMTNLSKEARKLLSEKAQ 60
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
I ++V + S DGTRK+L IE+V+IPEK TLCVS+QVGC C
Sbjct: 61 IDLLKLVKVEESKDGTRKYLFELE-----DGSRIESVFIPEKDWNTLCVSTQVGCPAGCR 115
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC T RNLTA EI+ Q + + +G+ R+ISN+V MGMGE
Sbjct: 116 FCLTAKDGFTRNLTAGEIVDQYIQVQRDVGE---------------NRRISNVVFMGMGE 160
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSN 248
PL NFDNVKK++ I + L S R++T+ST G VP I R+ +E+ V LA+SLHA ++
Sbjct: 161 PLLNFDNVKKAVEIMTHRDMLDLSTRKVTVSTVGIVPGIDRMAKEMNKVKLAVSLHATTD 220
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
++RN+LVP+NRKYP+ ++ A R YP +N RI EYVMLKG+NDS DA L+K++KG
Sbjct: 221 EVRNMLVPLNRKYPIGEIMAALRRYPADNNR-RIMIEYVMLKGVNDSLEDARRLVKLVKG 279
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
IP K+NLIPFNP+PG E+ + ++ I F + + ++ IR RG DI AACG L++
Sbjct: 280 IPVKVNLIPFNPYPGAEFEPTPREQIEAFQKVLWDHNIAAFIRDSRGQDISAACGMLRTK 339
Query: 369 SK 370
K
Sbjct: 340 EK 341
>gi|261868678|ref|YP_003256600.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261414010|gb|ACX83381.1| hypothetical protein D11S_2027 [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 379
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 153/378 (40%), Positives = 212/378 (56%), Gaps = 23/378 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++ +R L
Sbjct: 11 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 67 KTMAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRTTLCVSSQVGC 120
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 170
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VP+N+KY ++ LID+ Y +SN ++T EYVML IND A L
Sbjct: 231 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC
Sbjct: 291 AAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350
Query: 363 GQLKSLS-KRIPKVPRQE 379
GQL R + +++
Sbjct: 351 GQLAGDVIDRTKRTAQKK 368
>gi|145636367|ref|ZP_01792036.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
gi|148825353|ref|YP_001290106.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae PittEE]
gi|145270532|gb|EDK10466.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
gi|148715513|gb|ABQ97723.1| hypothetical protein CGSHiEE_01185 [Haemophilus influenzae PittEE]
Length = 383
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 213/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
2336]
gi|205829771|sp|B0UWR0|RLMN_HAES2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829859|sp|Q0I3U8|RLMN_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336]
Length = 372
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 156/382 (40%), Positives = 215/382 (56%), Gaps = 22/382 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K +L+ + R+++ ++G R Q+ KWIY G +F M++I++++R
Sbjct: 1 MSDKINLMNLTRQQMRAFFQELG----EKPFRADQLVKWIYHFGEDNFDHMTNINKKLRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I PEI E+ S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 57 KLKTVAEIKAPEIAVEQRSADGTIKWAMQVGD------QQVETVYIPETDRATLCVSSQV 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+
Sbjct: 111 GCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNV 160
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAIS
Sbjct: 161 VMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAIS 220
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
LHA +++LRN +VPIN+KY ++ML+++ Y +SN ++T EYVML IND A
Sbjct: 221 LHAPNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAH 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++LK P KINLIP+NP+P Y S I F + + G++ +R RG DI A
Sbjct: 281 QLAEVLKNTPCKINLIPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDA 340
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL K Q+ +
Sbjct: 341 ACGQLAGDVIDRTKRTAQKKRF 362
>gi|302381137|ref|YP_003816960.1| radical SAM protein [Brevundimonas subvibrioides ATCC 15264]
gi|302191765|gb|ADK99336.1| radical SAM enzyme, Cfr family [Brevundimonas subvibrioides ATCC
15264]
Length = 385
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 196/379 (51%), Positives = 268/379 (70%), Gaps = 16/379 (4%)
Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L G+ R L +AL+ I P +MR SQ+W WI+ G+ DF M++++++ + +
Sbjct: 19 VNLSGLTRAGLRQALIDADICPPEKAKMRASQVWGWIHHFGVTDFDAMTNMAKDAKAKMA 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
F++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC
Sbjct: 79 AAFTLARPEIVERQVSADGTRKWLIRT-----APGIEIETVYIPDVGRAGALCVSSQVGC 133
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC+TGTQ LVRNLTA EI+ QV +AR L ++P P R++SNIV
Sbjct: 134 TLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLNEWPS---------PKEDRRLSNIVF 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG VP + +G MLAISLH
Sbjct: 185 MGMGEPLYNLDHVSDAIDIISDNEGIALSRRRITVSTSGVVPQLEPLGTRTQAMLAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR++LVP+N+KYPL+ L+D R YPG+SNARR+TFEYVMLKG+NDSP +A L+K
Sbjct: 245 ATNDALRDVLVPLNKKYPLQQLMDGIRAYPGISNARRVTFEYVMLKGVNDSPDEARALVK 304
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+++GIPAK+NLIPFNPWPG +Y CSD K I F+ + ++GY+SPIRTPRG DILAACGQ
Sbjct: 305 LIEGIPAKVNLIPFNPWPGTDYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQ 364
Query: 365 LKSLSKRIPKVPRQEMQIT 383
LKS S+++ ++ +
Sbjct: 365 LKSESEKVRASALRKAEQA 383
>gi|322506720|gb|ADX02174.1| Fe-S-cluster redox protein [Acinetobacter baumannii 1656-2]
gi|323516594|gb|ADX90975.1| Fe-S-cluster redox protein [Acinetobacter baumannii TCDC-AB0715]
Length = 406
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 167/382 (43%), Positives = 224/382 (58%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L
Sbjct: 24 EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 79
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSS 120
Q I PE+V S DGTRKW+ R G +ETV IP SR TLC+SS
Sbjct: 80 EQICEIKAPEVVHRHYSKDGTRKWVFRV---GEGSGSLVETVLIPAEDKTGSRKTLCISS 136
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + + R ++
Sbjct: 137 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYME--------EVPVAERERSVT 188
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 189 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 248
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSP 296
ISLHA +++LRN LVPIN+KYPL LI AC+ Y + +T EYVML+G+ND P
Sbjct: 249 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 308
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG
Sbjct: 309 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 368
Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 369 DIDAACGQLVGQVADRTRRAEQ 390
>gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas arsenicoxydans]
gi|205829776|sp|A4G4J9|RLMN_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|133738391|emb|CAL61436.1| putative Fe-S-cluster redox enzyme [Herminiimonas arsenicoxydans]
Length = 386
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 143/370 (38%), Positives = 212/370 (57%), Gaps = 14/370 (3%)
Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
+L ++G R Q+ +WI+ G DF M+D+++ +R L I P
Sbjct: 13 PAQLIAYCGELG----EKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAP 68
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
++ + S DGTRKWL+ G +ETV+IPE++RGTLC+S+Q GC++ C FC T
Sbjct: 69 AVISDHTSSDGTRKWLIDV-----GQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCST 123
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G Q RNL+ EI+ Q+ +A L G E P R+I+N+VMMGMGEPL N
Sbjct: 124 GKQGFNRNLSVGEIIGQLWMAEFELRRTKGIEPG-----PKGERQITNVVMMGMGEPLLN 178
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
++ +L + D S+RR+TLSTSG VP I ++ ++ V LA+SLHA ++ LR+
Sbjct: 179 YEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDG 238
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
LVP+N+KYPL+ L+ AC+ Y + +TFEY ML G+NDS + A L+ +++ +P K
Sbjct: 239 LVPLNKKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRDVPCKF 298
Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
NLIPFNP+P S+ I F++ + G + IR RG DI AACGQL +
Sbjct: 299 NLIPFNPFPESGLTRSNNPRIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQLAGEVQDRT 358
Query: 374 KVPRQEMQIT 383
+V + ++
Sbjct: 359 RVQDRMKKMA 368
>gi|309750216|gb|ADO80200.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
influenzae R2866]
Length = 390
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 214/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 21 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC
Sbjct: 301 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 361 GQLAGDVIDRTKRTAMKRQF 380
>gi|229846452|ref|ZP_04466560.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
7P49H1]
gi|229810545|gb|EEP46263.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
7P49H1]
Length = 383
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 214/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KTVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|219872161|ref|YP_002476536.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
parasuis SH0165]
gi|219692365|gb|ACL33588.1| predicted Fe-S-cluster redox enzyme [Haemophilus parasuis SH0165]
Length = 386
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 154/382 (40%), Positives = 217/382 (56%), Gaps = 23/382 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++ +R
Sbjct: 15 TKTEKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLR 70
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + I PE+ E+ S DGT KW + +IETVYIP+ R TLCVSSQ
Sbjct: 71 EKLKRIAEIKAPEVAVEQRSADGTIKWAMWVGD------QQIETVYIPKDDRATLCVSSQ 124
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C+FC T Q RNL+ EI+ QV A ++G+F R I+N
Sbjct: 125 VGCALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNFGVTGI----------RPITN 174
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAI
Sbjct: 175 VVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAI 234
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDA 299
SLHA +++LRN L+P+N+KY ++MLID+ Y +SN ++T EYVML +ND A
Sbjct: 235 SLHAPNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHA 294
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI
Sbjct: 295 HQLADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDID 354
Query: 360 AACGQLKSLS-KRIPKVPRQEM 380
AACGQL R + +
Sbjct: 355 AACGQLAGDVIDRTKRTLEKRK 376
>gi|322515331|ref|ZP_08068328.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
gi|322118707|gb|EFX90919.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
Length = 393
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 153/380 (40%), Positives = 215/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E ++ R Q+ KWIY G +F MS+I++ +R L
Sbjct: 25 EKINLMNLTRQEMRELFAEM----DEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC
Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEADRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLST+G VP + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPAFDIMREKIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ ++PIN+KY ++ML+D+ Y +SN ++T EYV+L +ND A L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K ++ +
Sbjct: 365 GQLAGDVIDRTKRTMEKRKF 384
>gi|238897947|ref|YP_002923627.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 393
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 166/380 (43%), Positives = 222/380 (58%), Gaps = 23/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ R++L + +KIG R QI KWIY DF M+DI++++R L
Sbjct: 33 KKINLLDFNRQKLRDFFVKIG----EKPFRADQIMKWIYHYCYDDFSLMTDINKQLRDKL 88
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC
Sbjct: 89 QKIAEIRAPEVAKEQSSSDGTIKWAIKVGD------QQVETVYIPESDRATLCVSSQVGC 142
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL+ EI+ QV A ++G R I+N+VM
Sbjct: 143 ALECRFCSTAQQGFNRNLSVSEIIGQVWRAAKIIGSLKSKG----------QRPITNVVM 192
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV +++I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 193 MGMGEPLLNINNVVPAMAIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 252
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A ++D+RN LVPINRKY +E L+ A R Y SNA R+T EYVML +NDS + A L
Sbjct: 253 APTDDIRNELVPINRKYNIETLLAAVRRYLTKSNANQGRVTIEYVMLNHVNDSLKQAHQL 312
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
LK P KINLIP+NP+PG +Y S I F++ + + +++ IR RG DI AAC
Sbjct: 313 ADCLKNTPCKINLIPWNPFPGADYGRSSNSRIDRFAKVLMQYDFTTIIRKTRGNDIDAAC 372
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + ++ +
Sbjct: 373 GQLAGDVIDRTKRTLKKNNR 392
>gi|332305581|ref|YP_004433432.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 380
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 214/379 (56%), Gaps = 22/379 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L
Sbjct: 11 KINLLNFNRAGLREYFSSIG----EKPFRADQVMKWIYQAGVSDFDQMTNLNKALREKLK 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PEI ++ + DGT K+ LR G E+ETV+IP+ R TLCVSSQVGC+
Sbjct: 67 MQCEVKAPEIAYQQGATDGTIKFALRLE-----GGQEVETVWIPDADRATLCVSSQVGCA 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL+ EI+ QV G+ S R I+N+VMM
Sbjct: 122 LECTFCSTAQQGFNRNLSVAEIIGQVWRV----------ATTIGLSNDSAKRPITNVVMM 171
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA
Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
+ LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L
Sbjct: 232 PDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L P+KINLIPFNP+PG Y S I F++ + G +R RG DI AACG
Sbjct: 292 KVLADTPSKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351
Query: 364 QLKSL-SKRIPKVPRQEMQ 381
QL R ++ +++M+
Sbjct: 352 QLVGDVVDRTKRMLKKQMK 370
>gi|260549076|ref|ZP_05823297.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
RUH2624]
gi|260407804|gb|EEX01276.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
RUH2624]
Length = 410
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 166/382 (43%), Positives = 224/382 (58%), Gaps = 23/382 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+GM R +LE+ IG + R Q+ KWI+ + DF M++IS ++R L
Sbjct: 28 EKVNLLGMSRAQLEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSS 120
Q I PE+V S DGTRKW+ R G +ETV IP SR TLC+SS
Sbjct: 84 EQICEIKAPEVVHRHYSKDGTRKWVFRV---GEGSGSLVETVLIPAEDKTGSRKTLCISS 140
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + + R ++
Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYME--------EVPVAERERSVT 192
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 193 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 252
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSP 296
ISLHA +++LRN LVPIN+KYPL LI AC+ Y + +T EYVML+G+ND P
Sbjct: 253 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 312
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG
Sbjct: 313 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 372
Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
DI AACGQL + Q
Sbjct: 373 DIDAACGQLVGQVADRTRRAEQ 394
>gi|16272313|ref|NP_438526.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae Rd KW20]
gi|260580572|ref|ZP_05848400.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae RdAW]
gi|1175973|sp|P44665|RLMN_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|1573332|gb|AAC22023.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092914|gb|EEW76849.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae RdAW]
Length = 390
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 214/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 361 GQLAGDVIDRTKRTAMKRQF 380
>gi|325981894|ref|YP_004294296.1| ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
AL212]
gi|325531413|gb|ADZ26134.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
AL212]
Length = 366
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 160/379 (42%), Positives = 220/379 (58%), Gaps = 19/379 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + L + +IG R Q+ +WI+ GI DF MSD+++ +R L
Sbjct: 3 VNLLNYDNKSLVDFCTEIG----EKPFRARQLLRWIHQFGIADFDLMSDLAKGLREKLAT 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P I+ + ++ DGTRKWLL G IETV+IPE SRGTLC+SSQVGC+L
Sbjct: 59 QAVIELPTIMSDYVAADGTRKWLLSV-----GAGNGIETVFIPEISRGTLCISSQVGCAL 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG Q RNLT EI+ Q+ +A +L E R ++N+VMMG
Sbjct: 114 ACTFCSTGKQGFNRNLTVAEIIGQLWIANKML------ETCGDDTKLQTKRAVTNVVMMG 167
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+NV +L + D S+RR+T+STSG VP I R+ E V LA+SLHA
Sbjct: 168 MGEPLANFENVVTALDLMLDDHAYGLSRRRVTVSTSGLVPAIDRLRERCPVALAVSLHAP 227
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ LVPIN+KYP++ L+ AC+ Y + ITFEYVML GINDS A L+K++
Sbjct: 228 NDTLRDQLVPINKKYPIKELLAACQRYLSAAPRDFITFEYVMLDGINDSVAHACELVKLV 287
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ IP K NLIPFN + Y S + I F + + +G + +R RG DI AACGQL
Sbjct: 288 QDIPCKFNLIPFNSFSDSGYKRSSTEAIRVFRDVLVHAGLITTVRKTRGDDIAAACGQLA 347
Query: 367 SLSK----RIPKVPRQEMQ 381
K R+ ++ + +Q
Sbjct: 348 GQVKDKTHRLTRLKIETIQ 366
>gi|260582543|ref|ZP_05850333.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae NT127]
gi|260094354|gb|EEW78252.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae NT127]
Length = 390
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 213/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 361 GQLAGDVIDRTKRTAMKRQF 380
>gi|205829858|sp|A5UAC2|RLMN_HAEIE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|309972476|gb|ADO95677.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
influenzae R2846]
Length = 390
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 213/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 361 GQLAGDVIDRTKRTAMKRQF 380
>gi|56476113|ref|YP_157702.1| Fe-S-cluster redox protein [Aromatoleum aromaticum EbN1]
gi|81358332|sp|Q5P7B0|RLMN_AZOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|56312156|emb|CAI06801.1| predicted Fe-S-cluster redox enzyme [Aromatoleum aromaticum EbN1]
Length = 408
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 154/409 (37%), Positives = 214/409 (52%), Gaps = 43/409 (10%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
L +L+ + L + G R Q+ +W++ G DF M+D+++ +R
Sbjct: 1 MLTPVNLLDFDVDGLVTWFAERG----EKPFRARQVMRWMHRFGETDFGNMTDVAKSLRA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + I P + + +S DGTRKWLL G +E V+IPE +RGTLC+SSQ
Sbjct: 57 KLAEEACIRAPRAIRDAVSVDGTRKWLLDV-----GSANAVEAVFIPETNRGTLCISSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM------------ 170
GC+L C+FC TG Q RNL+A EI+ Q+ LA LLG +
Sbjct: 112 GCALDCAFCSTGKQGFNRNLSAAEIIGQLWLANRLLGGSASPAGSKDGDGGPDHASRATK 171
Query: 171 ---------------------VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
GR ISN+VMMGMGEPL NFDNV +L + D
Sbjct: 172 LDHRAADAKGVQSDSWRSSDPEEDHNGRVISNVVMMGMGEPLANFDNVVTALRLMLDDHA 231
Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
S+RR+T+STSG VP + R+ +E V LA+SLHA + LR+ LVPINRKYPL L+ A
Sbjct: 232 YGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHAPDDALRDRLVPINRKYPLRELMAA 291
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
C+ Y + +TFEYVML +NDS A L+++++ +P K NLIPFNP+P + S
Sbjct: 292 CQRYLERAPRDFVTFEYVMLDDVNDSDAHARALVELVRDVPCKFNLIPFNPFPNSGFDRS 351
Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK-RIPKVPR 377
+ I F+ + +G + R RG D+ AACGQL + R + R
Sbjct: 352 PAERIRRFAAILIDAGIVTTTRKTRGDDVNAACGQLAGQVQDRSRRTVR 400
>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
Length = 402
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 160/381 (41%), Positives = 218/381 (57%), Gaps = 22/381 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+GM +L IG + R Q+ KWI+ G +F MS++S+ +R L
Sbjct: 32 KVNLLGMPEAKLIAFFESIG----EKKFRAIQVMKWIHQLGADNFDDMSNVSKALRAKLK 87
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V + S DGTRK+L+R G +ETV+IP+ RGTLCVSSQVGCS
Sbjct: 88 DCAEIYAPEVVRQLDSADGTRKFLIRV-----AGGNVVETVFIPDGDRGTLCVSSQVGCS 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q R+LTA EI+ QV +A G + + R ++N+VMM
Sbjct: 143 LDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSFG----------QLQANGPRTVTNVVMM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++++ SKRR+TLSTSG VP + R+ + LAISLHA
Sbjct: 193 GMGEPLLNFDNVVDAMNLMMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHA 252
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LRN LVPINRKYP+ ML+D+ R Y R+IT EY ++ +ND P+ A L
Sbjct: 253 PNDELRNELVPINRKYPIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLA 312
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L+ +P KINLIPFNP+ Y + F + + + GY + +RT RG DI AACG
Sbjct: 313 ELLRDVPVKINLIPFNPFNLSNYKRVSNNALRKFQDILMQEGYITTVRTTRGDDIDAACG 372
Query: 364 QLKSLSKRI-PKVPRQEMQIT 383
QL I + R +
Sbjct: 373 QLAGSVNDITRRSERYRARFD 393
>gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola sp. JR]
gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
Length = 356
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 125/364 (34%), Positives = 192/364 (52%), Gaps = 28/364 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L + EEL L+++G R QI W++ +G+ + M+++ +R L++
Sbjct: 5 TNLKDLSLEELTAFLIELG----EKPFRAKQIADWVFKKGVAEIADMTNLPLSLRERLSK 60
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I EI+ E+ S DGT K+L +ETV++ ++CVS+QVGC +
Sbjct: 61 TAYIGRLEIMKEQQSRDGTTKYLFEL-----ADGNTVETVFLKHNYGNSVCVSTQVGCKM 115
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + RNL+ EI QVL +++S++V+MG
Sbjct: 116 GCLFCASTIGGFYRNLSPGEIYDQVLRIEQ-----------------DKKKRVSSVVIMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEPL N++ V K + + + L+ R ITLST G VP I ++ EE + L++SLHA
Sbjct: 159 SGEPLDNYEAVLKFIRLITAPYALNVGMRHITLSTCGLVPQIYKLAEEKLALTLSVSLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+LRN L+P+NRKYPLE LI AC Y + RRITFEY ++K +NDS A L ++
Sbjct: 219 PNNELRNKLMPVNRKYPLEELIPACHEYIKKT-GRRITFEYTLIKDVNDSQGHAEELARL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ +NLIP NP + + + F ++R+ + +R G DI AACGQL
Sbjct: 278 IKGMLCHVNLIPVNPVAERRWYRPSTETVKRFQTILERNRVPATVRREMGTDIDAACGQL 337
Query: 366 KSLS 369
+
Sbjct: 338 RRKY 341
>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
gi|205829772|sp|A1WXZ3|RLMN_HALHL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
SL1]
Length = 359
Score = 368 bits (944), Expect = e-100, Method: Composition-based stats.
Identities = 156/368 (42%), Positives = 211/368 (57%), Gaps = 25/368 (6%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G+ R L +G R R QI +W++ R + DF M+D+S+ +R L +H
Sbjct: 12 LLGLDRPRLAAFFDTLG----EKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHA 67
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ PE+ ++ + DGTRKW++R +E VYIPE RGTLC+SSQ GC + C
Sbjct: 68 RVGLPEVAADQQASDGTRKWVVRL-----ADGNCVEAVYIPEPKRGTLCISSQAGCPMGC 122
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+FC TG RNLTA EI+ QV +AR L + I+NIV MGMG
Sbjct: 123 TFCATGEGGFSRNLTAAEIVGQVHVARQHLPEGA----------------ITNIVFMGMG 166
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EPL NFD V + + +D G SKRR+T+STSG V I R+ V LA+SLHA +N
Sbjct: 167 EPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQRVTDVSLAVSLHAPNN 226
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+LRN LVP+NRK PLE L+ AC Y RRIT+EYVML G+ND A L++ L+G
Sbjct: 227 ELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLRG 286
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
IP+K+NLIPFNP+PG Y + + + F++ + G ++ IR RG DI ACGQL
Sbjct: 287 IPSKVNLIPFNPYPGARYGRTPDRQVRRFADRLLEHGLTATIRETRGDDIDGACGQLVGE 346
Query: 369 SKRIPKVP 376
+
Sbjct: 347 IRDARASK 354
>gi|325915372|ref|ZP_08177689.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC
35937]
gi|325538419|gb|EGD10098.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC
35937]
Length = 401
Score = 368 bits (944), Expect = e-100, Method: Composition-based stats.
Identities = 164/385 (42%), Positives = 229/385 (59%), Gaps = 28/385 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K++L+ + RE LE + R R Q+ KWI+ R + DF M+D+ + +R
Sbjct: 20 MRKQNLLDLDREGLERFFAE---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 76
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+QH ++ P +V +K S DGT KWLL G +ETVYIP+KSRGTLCVSSQVG
Sbjct: 77 LHQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAVETVYIPDKSRGTLCVSSQVG 133
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+V
Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVV 182
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSAESDVSLAVSL 242
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L
Sbjct: 243 HAANDSLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302
Query: 303 IKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
++++ K+NLIPFNP+PG Y S + +I F + + + + +R R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362
Query: 355 GLDILAACGQLKSLSKRIPKVPRQE 379
G DI AACGQLK + + RQ
Sbjct: 363 GDDIDAACGQLKGQV--MDRTRRQA 385
>gi|52080178|ref|YP_078969.1| ribosomal RNA large subunit methyltransferase N [Bacillus
licheniformis ATCC 14580]
gi|52785555|ref|YP_091384.1| YloN [Bacillus licheniformis ATCC 14580]
gi|319646042|ref|ZP_08000272.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
BT1B_CT2]
gi|81385601|sp|Q65JS3|RLMN_BACLD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|52003389|gb|AAU23331.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
gi|52348057|gb|AAU40691.1| YloN [Bacillus licheniformis ATCC 14580]
gi|317391792|gb|EFV72589.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
BT1B_CT2]
Length = 361
Score = 368 bits (944), Expect = e-100, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ S+ EEL+ L + G R +QI++W+Y + + F+ M+++S+E+R L
Sbjct: 14 ERPSIYSFEIEELKSWLSENG----EKPFRAAQIFEWLYEKRVTSFEKMTNLSKELRTKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N+HF + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 70 NEHFVLTTLKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 124
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S+IV+
Sbjct: 125 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSIVI 170
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP NF + L I + GL+ R IT+STSG +P I +E + AISL
Sbjct: 171 MGIGEPFDNFQEMLAFLKIVNHDKGLNIGARHITVSTSGIIPKIYEFADEKLQINFAISL 230
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L+ A +Y + RR+TFEY + G+ND A L
Sbjct: 231 HAPNTEIRSRLMPINRAYKLPDLMKAVDYYIKKT-GRRVTFEYGLFGGVNDQVEHAEELA 289
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKGI +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 290 ELLKGIKCHVNLIPVNYVPERDYVRTPKEQIFAFEKTLKSHGVNVTIRREQGHDIDAACG 349
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 350 QLRAKERQEE 359
>gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
Length = 377
Score = 368 bits (944), Expect = e-99, Method: Composition-based stats.
Identities = 166/376 (44%), Positives = 226/376 (60%), Gaps = 21/376 (5%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L+G R +L E L + G P R R +Q+ KW++ RG+ DF M+D+S+ +R L +
Sbjct: 10 NLLGYSRSQLTELLAQWGEP----RFRATQLVKWMHQRGVTDFDAMTDVSRTLRERLARE 65
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I PEI EK S DGT KW+LR IETV+IPE RGTLC+SSQVGC+L
Sbjct: 66 TEIALPEIALEKASGDGTVKWVLRL-----ADGNAIETVFIPESGRGTLCISSQVGCALD 120
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC T Q RNLTA EI+ QV LA L R +SN+V+MGM
Sbjct: 121 CTFCSTAQQGFNRNLTAAEIIGQVWLAMQRL-----------PAPEGRQRAVSNVVLMGM 169
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N+D V + + +D S+RR+TLSTSG VP + R+ E V LA+SLHA +
Sbjct: 170 GEPLANYDAVVAACQLMTDDNAYGLSRRRVTLSTSGLVPALDRLSEHTDVALAVSLHAPN 229
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKIL 306
++LR+ LVPINRKYP+ L+++CR Y + A +TFEYV+L G+ND P A L +L
Sbjct: 230 DELRDRLVPINRKYPIARLMESCRRYVEATGAHSGVTFEYVLLAGVNDRPEHANQLAGVL 289
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIP KINLIPFNP+PG + + DI F ++++GY + +R RG DI AACGQL
Sbjct: 290 RGIPGKINLIPFNPFPGAPFDRPAEGDIERFERQLQKAGYVTTVRRTRGDDIDAACGQLV 349
Query: 367 SLSKRIPKVPRQEMQI 382
+ + +++
Sbjct: 350 GQVEDRTNRGMRMIRL 365
>gi|145634639|ref|ZP_01790348.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
gi|229844547|ref|ZP_04464687.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
6P18H1]
gi|145268184|gb|EDK08179.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
gi|229812796|gb|EEP48485.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
6P18H1]
Length = 383
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 156/380 (41%), Positives = 213/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KVVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++ LID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|319892212|ref|YP_004149087.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
pseudintermedius HKU10-03]
gi|317161908|gb|ADV05451.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
pseudintermedius HKU10-03]
gi|323464690|gb|ADX76843.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
ED99]
Length = 364
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 128/370 (34%), Positives = 204/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +EL+ L + G R QI++W+Y + + F+ M+++S+ +R LL
Sbjct: 17 EKQSIYSLRFDELQGWLKENG----QQSFRAKQIYEWLYDKRVDSFEEMTNLSKALRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF+I V + S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 ADHFTITTLATVVRQESRDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S+IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSSIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG VP I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDHSLNIGARHITVSTSGIVPRIYDFADESLQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N++R+ L+PINR Y ++ L++A ++Y + RITFEY + G+ND A L
Sbjct: 234 HAANNEIRSKLMPINRAYDVDKLMEAIQYYQEKTKR-RITFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K++K + +NLIP N P Y+ + + DI F + +K+ G ++ IR +G DI AACG
Sbjct: 293 KLIKPLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKKLGINATIRREQGADIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 353 QLRAKERQAE 362
>gi|331005925|ref|ZP_08329273.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
IMCC1989]
gi|330420281|gb|EGG94599.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
IMCC1989]
Length = 403
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 220/379 (58%), Gaps = 21/379 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+G+ +L IG + R Q+ KWI+ G+ DF MS+IS+ +R L
Sbjct: 18 EKINLLGLSTSKLTAFFESIG----EKKFRAIQVQKWIHQNGVDDFSAMSNISKPLREKL 73
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ I PE++ + S DGTRK+L++ G +ETV+IP+ RGTLCVSSQVGC
Sbjct: 74 SRIAEIRAPEVIKQLDSVDGTRKFLIKVS-----GDNVVETVFIPDGDRGTLCVSSQVGC 128
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q R+LTA EI+ QV +A G P R ++N+VM
Sbjct: 129 SLDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSYGQLD----------PKADRTVTNVVM 178
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NFDNV S+++ D SKRR+TLSTSG VP + R+GE V LA+SLH
Sbjct: 179 MGMGEPLLNFDNVVDSMNLMMDDNAYGLSKRRVTLSTSGVVPALDRLGEHCDVSLAVSLH 238
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302
A ++ LRN LVPIN+KYP+ +L+ + + Y N R++T EY ++ +ND P A L
Sbjct: 239 APNDALRNELVPINKKYPIAVLLASAKRYIDGLPDNRRKMTIEYTLIDQVNDRPHHAYEL 298
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L+ IP KINLIPFNP+ Y + F + G+++ +RT RG DI AAC
Sbjct: 299 AELLREIPVKINLIPFNPFDLVNYKRVSNNALRNFQNILINEGFTTTVRTTRGDDIDAAC 358
Query: 363 GQLKSLSKRIPKVPRQEMQ 381
GQL + + +
Sbjct: 359 GQLAGDINDLTSRSARHLA 377
>gi|260771398|ref|ZP_05880323.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
CIP 102972]
gi|260613524|gb|EEX38718.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
CIP 102972]
gi|315180979|gb|ADT87893.1| predicted Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
Length = 373
Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats.
Identities = 147/383 (38%), Positives = 207/383 (54%), Gaps = 23/383 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L R QI KWIY G DF M++I++++R
Sbjct: 2 TTEKVNLLDFDRKGLRAYFAD---ELGEKAFRADQIMKWIYHFGCDDFDKMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV
Sbjct: 59 QLKERCEIRAPYVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDTLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL I + R +M+
Sbjct: 343 ACGQLVGDV--IDRTKRTKMKQA 363
>gi|311068096|ref|YP_003973019.1| ribosomal RNA large subunit methyltransferase N [Bacillus
atrophaeus 1942]
gi|310868613|gb|ADP32088.1| ribosomal RNA large subunit methyltransferase N [Bacillus
atrophaeus 1942]
Length = 363
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 120/368 (32%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ S+ +EL+ L + G R +QI++W+Y + + F+ M+++S+ +R L
Sbjct: 16 ENPSIYSFELDELQTWLTENG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKSLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ HF + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 SSHFVLTTLKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MG+GEP NF+ + L I + GL+ R IT+STSG +P I +++ + AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQQMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PIN+ Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNTEIRSRLMPINKAYKLPELMEAVKYYIEKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 292 ALLKGVKCHVNLIPVNYVPERDYVRTPKDQIFAFEKTLKSHGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 352 QLRAKERQ 359
>gi|37678948|ref|NP_933557.1| hypothetical protein VV0764 [Vibrio vulnificus YJ016]
gi|81758246|sp|Q7MNF3|RLMN_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016]
Length = 374
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 149/385 (38%), Positives = 210/385 (54%), Gaps = 23/385 (5%)
Query: 3 FLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+K +L+ R+ L E ++G R Q+ KWIY G+ DF M++I++++R
Sbjct: 2 STEKINLLDFDRKGLRELFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLR 57
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L Q I+ P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQ
Sbjct: 58 EKLKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A +G + + R I+N
Sbjct: 112 VGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITN 161
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAI
Sbjct: 162 VVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAI 221
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDA 299
SLHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 222 SLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +++K P KINLIPFNP+PG Y I F + + + ++ IR RG DI
Sbjct: 282 HELAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDID 341
Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384
AACGQL K G
Sbjct: 342 AACGQLVGDVIDRTKRTAMLKAAKG 366
>gi|205829851|sp|Q82XV4|RLMN_NITEU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 379
Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 155/374 (41%), Positives = 215/374 (57%), Gaps = 14/374 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + EL ++G R Q+ +W++ G DF MSD+++ RH L +
Sbjct: 2 INLLDFNKTELVRFCGEMG----EKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLME 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ PEIV + + DGTRKWLL G +E V+IPE SRGTLCVSSQVGC+L
Sbjct: 58 CAVVQLPEIVSDHTAGDGTRKWLL-----STGAGNAVEMVFIPEPSRGTLCVSSQVGCAL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLL-----GDFPGCEDIEGMVIPSVGRKISN 181
CSFC TG Q RNL+ EI+ Q+ A LL FP P R ++N
Sbjct: 113 ACSFCSTGRQGFNRNLSVAEIIGQLWWANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTN 172
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL NF+N+ +L + S+RR+T+STSG VP + R+ E V LA+
Sbjct: 173 VVMMGMGEPLANFENLVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAV 232
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++ LR+ LVPIN+KYP+ L+ AC Y + ITFEYVMLKG+NDS A
Sbjct: 233 SLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLKGVNDSVALARE 292
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++++ +P K+NLIPFN + G Y S + I F + + ++G + +R RG DI AA
Sbjct: 293 LVQLVRNVPCKLNLIPFNAFSGSGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAA 352
Query: 362 CGQLKSLSKRIPKV 375
CGQL + +
Sbjct: 353 CGQLAGQVRDKTRR 366
>gi|154685991|ref|YP_001421152.1| YloN [Bacillus amyloliquefaciens FZB42]
gi|205829638|sp|A7Z4J5|RLMN_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|154351842|gb|ABS73921.1| YloN [Bacillus amyloliquefaciens FZB42]
Length = 363
Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 117/368 (31%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ S+ +E+++ L + G R +QI++W+Y + + F M+++S+ +R L
Sbjct: 16 EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 ESNFVLTTLKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MG+GEP NF+ + L I + GL+ R IT+STSG +P I +++ + AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PIN+ Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK + +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 292 ELLKDVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 352 QLRAKERQ 359
>gi|167854516|ref|ZP_02477297.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
gi|167854271|gb|EDS25504.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
Length = 386
Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 155/376 (41%), Positives = 215/376 (57%), Gaps = 22/376 (5%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++ +R
Sbjct: 15 TKTEKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLR 70
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + I PE+ E+ S DGT KW + +IETVYIPE R TLCVSSQ
Sbjct: 71 EKLKRIAEIKAPEVAVEQRSADGTIKWAMWVGD------QQIETVYIPEDDRATLCVSSQ 124
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C+FC T Q RNL+ EI+ QV A ++G+F R I+N
Sbjct: 125 VGCALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNFGVTGI----------RPITN 174
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAI
Sbjct: 175 VVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAI 234
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDA 299
SLHA +++LRN L+P+N+KY ++MLID+ Y +SN ++T EYVML +ND A
Sbjct: 235 SLHAPNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHA 294
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI
Sbjct: 295 HQLADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIH 354
Query: 360 AACGQLKSLSKRIPKV 375
AACGQL K
Sbjct: 355 AACGQLAGDVIDRTKR 370
>gi|21231430|ref|NP_637347.1| hypothetical protein XCC1982 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768516|ref|YP_243278.1| hypothetical protein XC_2202 [Xanthomonas campestris pv. campestris
str. 8004]
gi|81305512|sp|Q4UUL5|RLMN_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81794005|sp|Q8P984|RLMN_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|21113100|gb|AAM41271.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573848|gb|AAY49258.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 401
Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 162/383 (42%), Positives = 223/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 22 KQNLLDLDREGLEHFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L +
Sbjct: 245 ANDVLRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
[Serratia symbiotica str. Tucson]
gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
[Serratia symbiotica str. Tucson]
Length = 399
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 155/378 (41%), Positives = 217/378 (57%), Gaps = 22/378 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E ++G R Q+ KW+Y DF+ M++I++ +R+ L
Sbjct: 32 KINLLDLNRQQMREFFSQMG----EKPFRADQVMKWMYHYCCDDFEQMTEINKVLRNKLQ 87
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+ +E+ S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 88 RVAEIRAPEVAEEQCSADGTIKWAIKVGD------QQVETVYIPDGDRATLCVSSQVGCA 141
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 142 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKIAGE----------RPITNVVMM 191
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 192 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 251
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++ +RN +VPINR Y +E + A R Y SNA R+T EYVML INDS DA L
Sbjct: 252 PNDKIRNEIVPINRNYNIESFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLA 311
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK P KINLIP+NP+P Y S + F++ + G+++ +R RG DI AACG
Sbjct: 312 NVLKNTPCKINLIPWNPFPAAPYGRSSNSRVDRFAKVLMEYGFTTIVRRTRGDDIDAACG 371
Query: 364 QLKSLSKRIPKVPRQEMQ 381
QL K ++ +
Sbjct: 372 QLAGEVIDRTKRTLKKKR 389
>gi|190574019|ref|YP_001971864.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a]
gi|254524361|ref|ZP_05136416.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14]
gi|205829904|sp|B2FNQ6|RLMN_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|190011941|emb|CAQ45562.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a]
gi|219721952|gb|EED40477.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14]
Length = 401
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 162/383 (42%), Positives = 227/383 (59%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + R LE+ +++ + R Q+ KWI+ R + DF M+D+ + +R L
Sbjct: 22 KQNLLDLDRAGLEKFFVEV---LGEKKFRAHQVMKWIHHRYVTDFDEMTDLGKVLRAKLQ 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
H ++ P IV +K S DGT KWLL + G IETVYIP+K+RGTLCVSSQVGC
Sbjct: 79 AHAEVLVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQMRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSAESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+ +C Y + R +TFEY ++KGIND P A L +
Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S++ I F + + S + +R RG
Sbjct: 305 LMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|319943743|ref|ZP_08018024.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599]
gi|319742976|gb|EFV95382.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599]
Length = 460
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 151/386 (39%), Positives = 210/386 (54%), Gaps = 19/386 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+G+ R+ + +G R Q+ +W++ RG+ D+ M+D+++ R L
Sbjct: 64 VNLLGLDRQGFLDFCGGMG----EKPFRAHQLMRWVHQRGVADWSAMTDLARSFRERLQD 119
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I P ++ + + D TRKWL G +E V+IPE RGTLCVSSQ GC++
Sbjct: 120 KALIQAPSVLKDHTAPDATRKWLFDV-----GAGNAVEAVFIPEARRGTLCVSSQAGCAV 174
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI----------PSVG 176
CSFC TG Q RNL EIL Q+ LA LL G
Sbjct: 175 NCSFCSTGKQGFSRNLNTAEILGQIWLANQLLRQPGAQPRWGGADDMAQLDEDVDDAGAL 234
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
R ISNIV MGMGEPL N++ + +L D G S+RR+T+STSG VP I R+ E+
Sbjct: 235 RPISNIVFMGMGEPLLNYNALLPALRALLDDHGYGLSRRRVTVSTSGVVPLIDRLSEDCP 294
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V LA+SLHA ++ LR+ LVP+NRKYPL+ L+ AC+ Y ++ ITFEYVMLK INDS
Sbjct: 295 VALAVSLHASNDTLRDQLVPLNRKYPLKELLAACQRYLKVAPRDFITFEYVMLKDINDSV 354
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L ++ +P K NLIPFNP+P S + I F + + R+G + +R RG
Sbjct: 355 AHARELAALVADVPCKFNLIPFNPFPNSGLSRSSDRTIRQFGDVLLRAGIVTTVRRTRGD 414
Query: 357 DILAACGQLKSLSKRIPKVPRQEMQI 382
+I AACGQL ++ + +Q
Sbjct: 415 EIDAACGQLAGEVVDRTRLRERTVQF 440
>gi|317129257|ref|YP_004095539.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522]
gi|315474205|gb|ADU30808.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522]
Length = 362
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 132/373 (35%), Positives = 202/373 (54%), Gaps = 26/373 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K S+ + EEL + + IG + R QI+ W+YV+ + F+ M+++S+++RH L
Sbjct: 14 EKPSIYSLTYEELIQWIEGIG----ESKFRAKQIFDWLYVKRVTSFEEMTNLSKDLRHNL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+SI + + S DGT K+L IETV + + ++CV++QVGC
Sbjct: 70 ANEYSITTLSTITNQTSKDGTIKFLFELQ-----DGYSIETVVMRHEYGNSVCVTTQVGC 124
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L C+FC + L RNL A EI+ QVL A+ L D ++ ++V+
Sbjct: 125 RLGCTFCASTLGGLKRNLEAGEIVAQVLKAQQFLDD--------------TDERVDSVVV 170
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEP N+D + + L + GL+ R IT+STSG VP I + +E + + AISL
Sbjct: 171 MGIGEPFDNYDELIRFLKTINHDNGLNIGARHITVSTSGVVPKIYQFADENMQINFAISL 230
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + R L+PINR YP++ L+DA R+Y +N RITFEY + G+NDS DA L
Sbjct: 231 HAAKTETRTRLMPINRAYPIDKLMDAIRYYIKKTNR-RITFEYGLFGGVNDSIEDAELLA 289
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K I +NLIP N Y+ + ++ I F +K + IR +G DI AACG
Sbjct: 290 DLIKDIKCHVNLIPVNDVLERNYVRTPKEQIFAFERALKNRDINVTIRREQGHDIDAACG 349
Query: 364 QLKSLSKRIPKVP 376
QL++ +R +
Sbjct: 350 QLRAK-ERNEETR 361
>gi|325919431|ref|ZP_08181457.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC
19865]
gi|325550097|gb|EGD20925.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC
19865]
Length = 401
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 163/385 (42%), Positives = 225/385 (58%), Gaps = 28/385 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
L+K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R
Sbjct: 20 LRKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 76
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVG
Sbjct: 77 LHQHAEVLVPTVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVG 133
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+V
Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGNVP-----------HQQRRLTNVV 182
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNL 302
HA ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L
Sbjct: 243 HAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQL 302
Query: 303 IKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
++++ K+NLIPFNP+PG Y S + +I F + + + + +R R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362
Query: 355 GLDILAACGQLKSLSKRIPKVPRQE 379
G DI AACGQLK + + RQ
Sbjct: 363 GDDIDAACGQLKGQV--MDRTRRQA 385
>gi|90408602|ref|ZP_01216757.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3]
gi|90310294|gb|EAS38424.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3]
Length = 372
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 156/381 (40%), Positives = 216/381 (56%), Gaps = 22/381 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+KK +L+ + RE L + +G R Q+ KWIY G DF MS+I++++R
Sbjct: 2 SIKKVNLLNLNREGLRAFFVDMG----EKAFRAEQVMKWIYHYGCDDFSEMSNINKKLRE 57
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I+ PE+ E+ S DGT KW+++ +IETVYIPEK R TLCVSSQV
Sbjct: 58 KLTLCAEIVAPEVRVEQRSKDGTIKWVMKVGD------QDIETVYIPEKDRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC T Q RNLT EI+ QV A ++G ++ S R I+N+
Sbjct: 112 GCALACNFCSTAQQGFNRNLTVSEIIGQVWRAAKIVG----------VMGESGKRPITNV 161
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N +NV ++ + D G + SKRR+T+STSG VP + +G+ I V LAIS
Sbjct: 162 VMMGMGEPLLNLNNVIPAMELMLDDFGYALSKRRVTISTSGVVPALDILGDRIDVALAIS 221
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN KY + + + Y S A R +T EY++L NDS A
Sbjct: 222 LHASNDELRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVTIEYLLLDHFNDSTDQAH 281
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +LK P KINLIPFNP+P Y + F++ + GY+ +R RG DI A
Sbjct: 282 ELAILLKDTPCKINLIPFNPFPDNSYKKPSNSRVDRFNKVLMEYGYTVIVRKTRGDDIDA 341
Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
ACGQL K ++ Q
Sbjct: 342 ACGQLVGDVIDRTKRTMRKRQ 362
>gi|194365435|ref|YP_002028045.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia
R551-3]
gi|254807214|sp|B4SSW3|RLMN_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|194348239|gb|ACF51362.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia
R551-3]
Length = 401
Score = 366 bits (939), Expect = 3e-99, Method: Composition-based stats.
Identities = 161/383 (42%), Positives = 228/383 (59%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + R LE+ +++ + R Q+ KWI+ R + +F M+D+ + +R L
Sbjct: 22 KQNLLDLDRAGLEKFFVEV---LGEKKFRAHQVMKWIHHRYVTEFDEMTDLGKVLRAKLQ 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+H ++ P IV +K S DGT KWLL + G IETVYIP+K+RGTLCVSSQVGC
Sbjct: 79 EHAEVLVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWIAARHLGNVP-----------HQMRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+ +C Y + R +TFEY ++KGIND P A L +
Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S++ I F + + S + +R RG
Sbjct: 305 LMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|262274790|ref|ZP_06052601.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
CIP 101886]
gi|262221353|gb|EEY72667.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
CIP 101886]
Length = 373
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 150/383 (39%), Positives = 208/383 (54%), Gaps = 21/383 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R QI KW+Y G+ DF MS+I++ +R
Sbjct: 2 TTEKINLLDFDRQALRAFFAE---ELGEKAFRADQIMKWMYHFGVDDFDQMSNINKVLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I PE+ + S DGT KW +R G ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLKARCEIRAPEVSAAQYSADGTIKWAMRV------GNQDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALDCKFCSTAQQGFNRNLKVSEIIGQVWRAAKEIG----------VEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L++ D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALNLMLDDLGYGLSKRRVTVSTSGVVSGLEQMIGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN +Y +E + + R Y SN R+T EY++L +ND A
Sbjct: 223 LHAPNDELRSQIMPINDRYDIETFLASVRRYIASSNANRGRVTVEYILLDHVNDDMEHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++LK PAKINLIPFNP+PG Y I F + + + Y+ +R RG DI A
Sbjct: 283 QLAELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDYTVIVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL K + + I
Sbjct: 343 ACGQLVGDVIDRTKRTQNRLNIE 365
>gi|311029975|ref|ZP_07708065.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
m3-13]
Length = 363
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 209/369 (56%), Gaps = 25/369 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + ELEE LL IG + RT+QI++W+Y + + F+ MS++S+ +R L
Sbjct: 17 KPSIYSLQLHELEEWLLSIG----EKKFRTTQIFEWLYQKRVTSFEEMSNLSKSLRDKLE 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +++ + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 ETYALTTLKTIVQQTSSDGTMKFLFELH-----DGYSIETVLMKHEYGNSVCVTTQVGCR 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNL A EI+ QV+ + L + + ++S++V+M
Sbjct: 128 IGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------MDERVSHVVIM 173
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP NFD + L I + L+ R IT+STSG +P I + +E + + A+SLH
Sbjct: 174 GIGEPFDNFDEMLDFLKIINHDQALNIGARHITVSTSGIIPKIYKFADENMQINFAVSLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + ++R+ L+PINR Y L L+++ R+Y + RR++FEY + G+ND A L +
Sbjct: 234 APNTEIRSRLMPINRAYKLPDLMESIRYYINKT-GRRVSFEYGLFGGVNDQVEHAEELAQ 292
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + +R +G DI AACGQ
Sbjct: 293 LLKGMKCHVNLIPVNYVPERDYVRTPKEQINLFEKTLKNLGVNVTVRREQGHDIDAACGQ 352
Query: 365 LKSLSKRIP 373
L++ ++
Sbjct: 353 LRAKERKEE 361
>gi|283852881|ref|ZP_06370142.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B]
gi|283571710|gb|EFC19709.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B]
Length = 350
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 138/362 (38%), Positives = 200/362 (55%), Gaps = 22/362 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+LI + ELE ++ +G P R Q+W+W++ +G RD M+D S+ +R L +
Sbjct: 2 TNLIDLTFHELETLVVSLGEP----PYRARQVWQWLWQKGCRDIAAMTDTSKALRARLAE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+I +P++ S DGT K+LL G +E V IPEK T C+S+QVGC++
Sbjct: 58 VATIAWPQVARVSESADGTVKFLLTL-----GDGESVECVLIPEKDHYTACLSTQVGCAM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG RN+T E+L QVL+AR L + + N+V MG
Sbjct: 113 GCAFCATGMMGFRRNMTPGEMLGQVLVARQYLLEKGVALA------------LRNLVFMG 160
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+DN+ K+L G S RRIT+ST+G ++ +G LA+SLHA
Sbjct: 161 MGEPLLNYDNLVKTLEALHHPQGFDISGRRITVSTAGVARHLLDLGRTGLCSLAVSLHAP 220
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR ++P K PL LI+ R YP + R+TFEY+ML G+NDS DA L+++L
Sbjct: 221 TQALREKIMPGAAKLPLGELIEILRQYP-MKPRERLTFEYLMLDGVNDSLEDARELVRLL 279
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ AK+NLI FN PG Y + + F E +K G ++ +R +G DI AACGQL+
Sbjct: 280 SRVKAKVNLIVFNATPGLPYQPPPAERVFAFQEALKAKGLTATVRKSKGADIAAACGQLR 339
Query: 367 SL 368
+
Sbjct: 340 AE 341
>gi|145632612|ref|ZP_01788346.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
gi|144986807|gb|EDJ93359.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
Length = 383
Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats.
Identities = 157/380 (41%), Positives = 213/380 (56%), Gaps = 22/380 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G +F M +I++++R L
Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMININKKLREKL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC
Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY ++MLID+ Y +SN ++T EYVML +ND A L
Sbjct: 234 APNDELRDEIVPINKKYNIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353
Query: 363 GQLKSLSKRIPKVPRQEMQI 382
GQL K + Q
Sbjct: 354 GQLAGDVIDRTKRTAMKRQF 373
>gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
Length = 374
Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats.
Identities = 148/385 (38%), Positives = 210/385 (54%), Gaps = 23/385 (5%)
Query: 3 FLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+K +L+ R+ + E ++G R Q+ KWIY G+ DF M++I++++R
Sbjct: 2 STEKINLLDFDRKGMRELFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLR 57
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L Q I+ P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQ
Sbjct: 58 EKLKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A +G + + R I+N
Sbjct: 112 VGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITN 161
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAI
Sbjct: 162 VVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAI 221
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDA 299
SLHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 222 SLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +++K P KINLIPFNP+PG Y I F + + + ++ IR RG DI
Sbjct: 282 HELAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDID 341
Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384
AACGQL K G
Sbjct: 342 AACGQLVGDVIDRTKRTAMLKAAKG 366
>gi|328553529|gb|AEB24021.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens TA208]
gi|328911679|gb|AEB63275.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus
amyloliquefaciens LL3]
Length = 363
Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats.
Identities = 118/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ S+ +E+++ L + G R +QI++W+Y + + F M+++S+ +R L
Sbjct: 16 EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 ESNFVMTTLKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MG+GEP NF+ + L I + GL+ R IT+STSG +P I +++ + AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PIN+ Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 292 ELLKGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 352 QLRAKERQ 359
>gi|294666609|ref|ZP_06731848.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603629|gb|EFF47041.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 405
Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats.
Identities = 164/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 26 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 83 QHAEVLVPNVVFDKPSSDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 139
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 140 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 188
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 189 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 248
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 249 ANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 308
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 309 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 368
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 369 DIDAACGQLKGQV--MDRTRRQA 389
>gi|269962413|ref|ZP_06176763.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832909|gb|EEZ87018.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 375
Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats.
Identities = 143/384 (37%), Positives = 205/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAALKAARG 366
>gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36]
gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36]
Length = 371
Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats.
Identities = 160/380 (42%), Positives = 217/380 (57%), Gaps = 25/380 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + + IG R Q+ KWIY G D M+++++++R L
Sbjct: 4 KKINLLDLDRKAMRQYFADIG----EKPFRADQVMKWIYHEGCDDINEMTNLNKKLREKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PEI E+ S DGT KW L+ E ETVYIP+ R TLCVSSQVGC
Sbjct: 60 LRETVIQAPEISKEQRSADGTIKWALKV------DGQEYETVYIPDGDRATLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNL EI+ QV A ++G + R I+N+VM
Sbjct: 114 ALECTFCSTAQQGFNRNLRVSEIIGQVWRASQVIG------------FNNKKRAITNVVM 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N N+ +L+I D G SKRR+T+STSG VP + ++ + I V LAISLH
Sbjct: 162 MGMGEPLLNMTNLVPALNIMLDDYGFGLSKRRVTVSTSGVVPALDKLADSIDVALAISLH 221
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
A ++ LR+ LVPIN+KY +EML+ + ++Y G SNA R +T EYV+L +NDS A L
Sbjct: 222 ASNDTLRDELVPINKKYNIEMLLASVKNYIGKSNANRKKVTIEYVLLDHVNDSTDQAHEL 281
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK P KINLIPFNP+PG +Y I F++ + + IR RG DI AAC
Sbjct: 282 AHLLKDTPCKINLIPFNPFPGSDYGKPSNSRIDRFNKVLMEYENTVTIRKTRGDDIDAAC 341
Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
GQL R + ++ MQ
Sbjct: 342 GQLAGDVIDRTKRTLKKRMQ 361
>gi|325927620|ref|ZP_08188849.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans
91-118]
gi|325541987|gb|EGD13500.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans
91-118]
Length = 401
Score = 365 bits (936), Expect = 7e-99, Method: Composition-based stats.
Identities = 164/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 22 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVLVPNVVFDKPSADGTHKWLLAM---GADGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 245 ANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|294625018|ref|ZP_06703668.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292600693|gb|EFF44780.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 405
Score = 365 bits (936), Expect = 7e-99, Method: Composition-based stats.
Identities = 164/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 26 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 83 QHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 139
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 140 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 188
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 189 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 248
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 249 ANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 308
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 309 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 368
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 369 DIDAACGQLKGQV--MDRTRRQA 389
>gi|308069673|ref|YP_003871278.1| hypothetical protein PPE_02915 [Paenibacillus polymyxa E681]
gi|305858952|gb|ADM70740.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 346
Score = 365 bits (936), Expect = 8e-99, Method: Composition-based stats.
Identities = 127/368 (34%), Positives = 198/368 (53%), Gaps = 25/368 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + EEL++ G P R QI+ W+YV+ + DF M+++S+ +R L
Sbjct: 2 KPFIYDLTLEELQDWAKNNGEPA----FRGGQIFDWLYVKRVNDFSEMTNLSKALREKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ FS + + + S DGT K+L IETV + ++CV++QVGC
Sbjct: 58 EQFSFVTLSEITKLESKDGTVKFLFGLH-----DDHAIETVIMRHNYGNSICVTTQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNLTA EI QV+ A+ +L ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLTAGEITAQVVQAQKILD--------------KTNERVSSIVIM 158
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N++ L GL+ +R IT+STSG VPNI + +E + LAIS+H
Sbjct: 159 GSGEPFENYEATMTFLRTMVHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 218
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ L+P+NR+YP + ++D+ R+Y + RRI+FEY ++ G+ND A L
Sbjct: 219 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKT-GRRISFEYALIGGVNDQAEHAEELAD 277
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ
Sbjct: 278 VLKDMLCHVNLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAACGQ 337
Query: 365 LKSLSKRI 372
L++ +
Sbjct: 338 LRAKHMEL 345
>gi|205829947|sp|Q8PKZ1|RLMN_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 401
Score = 365 bits (936), Expect = 8e-99, Method: Composition-based stats.
Identities = 165/383 (43%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 22 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 245 ANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
Length = 374
Score = 365 bits (936), Expect = 8e-99, Method: Composition-based stats.
Identities = 149/382 (39%), Positives = 210/382 (54%), Gaps = 21/382 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ R+ + + + R Q+ KWIY G DF+ M++I++++R L
Sbjct: 4 QKVNLLDFDRKGMRKFFQE---ELGEKAFRADQVMKWIYHFGCDDFEKMTNINKKLREKL 60
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P + + + S DGT KW +R ++ETVYIP+ R TLCVSSQVGC
Sbjct: 61 IRLAEIKAPTVSEAQHSSDGTIKWAMRVGD------QDVETVYIPDDDRATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A +G + + R I+N+VM
Sbjct: 115 ALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVVM 164
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ EI V LAISLH
Sbjct: 165 MGMGEPLLNMKNLMPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGEIDVALAISLH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
A ++ LR+ ++PIN ++ +E + + R Y SNA R +T EYV+L +ND A L
Sbjct: 225 APNDKLRSEIMPINDRWDIEDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAREL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK PAKINLIPFNP+PG Y I F + + + Y+ +R RG DI AAC
Sbjct: 285 AELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMQYDYTVTVRKTRGDDIDAAC 344
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL K +Q + G
Sbjct: 345 GQLVGDVIDRTKRTKQLAEQKG 366
>gi|33151554|ref|NP_872907.1| hypothetical protein HD0319 [Haemophilus ducreyi 35000HP]
gi|81423849|sp|Q7VNZ4|RLMN_HAEDU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|33147774|gb|AAP95296.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 393
Score = 365 bits (936), Expect = 8e-99, Method: Composition-based stats.
Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ M R+E+ E L +G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 25 EKVNLMNMTRQEMREFLANLG----EKPFRADQLMKWIYHFGEDEFDNMSNINKVLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I P I E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC
Sbjct: 81 KKVAEIKAPAIAIEQRSSDGTIKWAMQV------GNQQIETVYIPEGDRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 135 ALECKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGV----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH
Sbjct: 185 MGMGEPLLNMNNVIPAMQIMLDDFAYGLSKRRVTLSTAGVVPALDLMREKIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
A +N+LRN ++PIN+KY ++ML+D+ Y +SN ++T EYV+L +ND A L
Sbjct: 245 APNNELRNEIMPINKKYNIKMLMDSVAKYLAVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364
Query: 363 GQLKSLS-KRIPKVPRQEM 380
GQL R + +
Sbjct: 365 GQLAGEVIDRTKRTLEKRK 383
>gi|21242760|ref|NP_642342.1| hypothetical protein XAC2016 [Xanthomonas axonopodis pv. citri str.
306]
gi|21108240|gb|AAM36878.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 405
Score = 365 bits (936), Expect = 8e-99, Method: Composition-based stats.
Identities = 165/383 (43%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 26 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 83 QHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 139
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 140 LNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 188
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 189 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 248
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 249 ANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 308
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 309 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 368
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 369 DIDAACGQLKGQV--MDRTRRQA 389
>gi|328472598|gb|EGF43461.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus 10329]
Length = 375
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 143/384 (37%), Positives = 206/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE+ R TLCVSSQV
Sbjct: 59 KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAALKAARG 366
>gi|319786998|ref|YP_004146473.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1]
gi|317465510|gb|ADV27242.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1]
Length = 418
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 163/389 (41%), Positives = 223/389 (57%), Gaps = 29/389 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE + R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 35 KQNLLELDREGLERFFEE---TLGEKRYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 91
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
H ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 92 AHAEVVVPNVVFDKPSADGTHKWLLAM---GADGKNAIETVYIPDKGRGTLCVSSQVGCG 148
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 149 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 197
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 198 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSVESDVSLAVSLHA 257
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+NRKYP+ L+ +C Y +TFEY ++KG+ND P A L +
Sbjct: 258 PNDALRETLVPLNRKYPIAELMASCARYLRANKKRESVTFEYTLMKGVNDQPEHARQLAR 317
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y SD+ I F + + S + +R RG
Sbjct: 318 LMRQFDNAVQARDSGKVNLIPFNPFPGTRYERSDEATIRAFQKILLDSQVLTMVRRTRGD 377
Query: 357 DILAACGQLKSLSKRIPKVP---RQEMQI 382
DI AACGQLK + R+ M+
Sbjct: 378 DIDAACGQLKGQVMDRTRRQAEFRRSMER 406
>gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
Length = 373
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 149/381 (39%), Positives = 208/381 (54%), Gaps = 21/381 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R QI KWIY G DF+ M++I++ +R
Sbjct: 2 TTEKVNLLDFDRKGLRTYFAE---ELGEKAFRADQIMKWIYHFGCDDFEKMTNINKNLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L H I P + D + S DGT KW +R ++ETVYIPE+ R TLCVSSQV
Sbjct: 59 KLQTHCEIRAPYVSDAQYSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 283 ELAQLMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
ACGQL K + + Q
Sbjct: 343 ACGQLVGDVIDRTKRTKLKQQ 363
>gi|319649619|ref|ZP_08003775.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
gi|317398781|gb|EFV79463.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
Length = 361
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 202/370 (54%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K S+ + EL++ L + R QI+ W+Y + I F+ M+++S+ +R L
Sbjct: 14 QKPSIYTLQLNELKDWLKEN----NEKAFRAEQIFDWLYTKRITSFEDMTNLSKGLRDTL 69
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ +FS+ + + ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 70 SANFSLTTLKTIIQQESADGTIKFLFELH-----DGYSIETVLMRHDYGNSVCVTTQVGC 124
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 125 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSVVI 170
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEP N+D++ L I + GL+ R IT+STSG +P I + +E + + AISL
Sbjct: 171 MGIGEPFDNYDSMLSFLKIINHDKGLNIGARHITVSTSGIIPKIYKFADENMQINFAISL 230
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L+D+ R+Y + RR++FEY + G+ND A L
Sbjct: 231 HAPNTEIRSRLMPINRAYKLPDLMDSIRYYINKT-GRRVSFEYGLFGGVNDQVEHAEELA 289
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K++K + +NLIP N P +Y+ + + I F + +K G + IR G DI AACG
Sbjct: 290 KLIKNVKCHVNLIPVNYVPERDYVRTPKDQIFAFEKTLKNHGINVTIRREHGHDIDAACG 349
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 350 QLRAKERKEE 359
>gi|289666007|ref|ZP_06487588.1| hypothetical protein XcampvN_23775 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 401
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 164/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 22 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKPLRAKLH 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 245 ANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|156973378|ref|YP_001444285.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
gi|205829926|sp|A7MU39|RLMN_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
Length = 375
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 143/384 (37%), Positives = 205/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + R Q+ KWIY G+ DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGMRQFFAD---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAALKAARG 366
>gi|188991676|ref|YP_001903686.1| Radical SAM superfamily protein, probable [Xanthomonas campestris
pv. campestris str. B100]
gi|205829934|sp|B0RT51|RLMN_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|167733436|emb|CAP51637.1| Radical SAM superfamily protein, probable [Xanthomonas campestris
pv. campestris]
Length = 401
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 162/383 (42%), Positives = 223/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 22 KQNLLDLDREGLEHFFAD---TLGEARYRAHQMMKWIHHRYVTDFDQMTDLGKALRAKLH 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L +
Sbjct: 245 ANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|323491629|ref|ZP_08096808.1| ribosomal RNA large subunit methyltransferase N [Vibrio
brasiliensis LMG 20546]
gi|323314205|gb|EGA67290.1| ribosomal RNA large subunit methyltransferase N [Vibrio
brasiliensis LMG 20546]
Length = 375
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 143/384 (37%), Positives = 205/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + R Q+ KWIY G+ +F M++I++++R
Sbjct: 2 TTEKINLLDFDRQGMRKFFADQ---LGEKAFRADQVMKWIYHFGVDNFDDMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE+ R TLCVSSQV
Sbjct: 59 KLQHRCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+NI
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNI 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAMNKAAKG 366
>gi|296331150|ref|ZP_06873624.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674306|ref|YP_003865978.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151794|gb|EFG92669.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412550|gb|ADM37669.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 363
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 203/368 (55%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ S+ +E+++ L G R +QI++W+Y + + F+ M+++S+++R L
Sbjct: 16 ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEEMTNLSKDLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ HF + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 SAHFEMTTLKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVLKVQKALDE--------------TDERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MG+GEP NF+ + L I + GL+ R IT+STSG +P I +++ + AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+GI +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 292 DLLEGIKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 352 QLRAKERQ 359
>gi|254248069|ref|ZP_04941390.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184]
gi|124872845|gb|EAY64561.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184]
Length = 379
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 139/378 (36%), Positives = 205/378 (54%), Gaps = 12/378 (3%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L+ E L +G R Q+ +WI+ DF GM+D+++ +
Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L SI+ P+I + +S DGTRKWL+ G +ETV+IPE++RGTLCVSS
Sbjct: 57 REKLKGRASIVMPDIASDHVSTDGTRKWLIDV-----GNGNAVETVFIPEETRGTLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+ N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVSDDEHERAALNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL K ++ +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366
>gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4]
gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4]
Length = 375
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 144/384 (37%), Positives = 206/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKSFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLQYKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L IND A
Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHINDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAALKAARG 366
>gi|291484127|dbj|BAI85202.1| hypothetical protein BSNT_02588 [Bacillus subtilis subsp. natto
BEST195]
Length = 363
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 120/368 (32%), Positives = 203/368 (55%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ S+ +E+++ L G R +QI++W+Y + + F+ M+++S+++R L
Sbjct: 16 ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEEMTNLSKDLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N HF + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 NTHFVLTTLKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MG+GEP NF+ + L I + GL+ R IT+STSG +P I +++ + AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+G+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 352 QLRAKERQ 359
>gi|226313314|ref|YP_002773208.1| ribosomal RNA large subunit methyltransferase N [Brevibacillus
brevis NBRC 100599]
gi|226096262|dbj|BAH44704.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 356
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 131/369 (35%), Positives = 205/369 (55%), Gaps = 25/369 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + ++E++E L+ G R QI+ W+YV+ + F+ MS++S+E+R L
Sbjct: 10 KPLIYSLTQDEMKEWLVSAG----DKAFRAQQIFDWLYVKRVSSFEEMSNLSKELREKLA 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + + S DGT K+L + IETV + ++CV++QVGC
Sbjct: 66 DTFRMEPLKEITHQESQDGTIKFLFQLV-----DGHAIETVIMRHNYGNSICVTTQVGCR 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNL A EI+ QVL A+ L + G ++S++V+M
Sbjct: 121 IGCTFCASTLGGLKRNLDAGEIVSQVLTAQRRLD--------------AEGERVSHVVVM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP NF+++ LS+ +D+ GL+ R IT+STSG VP I E V LAISLH
Sbjct: 167 GIGEPFENFESLMAFLSVINDNRGLNIGARHITVSTSGIVPKIYEFAERGGQVNLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +LR+ L+PINR +PL L++AC HY + RRI+FEY + G ND P A L +
Sbjct: 227 APNTELRSQLMPINRGFPLAKLMEACHHYINKT-GRRISFEYGLFGGKNDQPEHAEELAE 285
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++ + +NLIP N P +Y+ + + +I F ++ G + IR +G DI AACGQ
Sbjct: 286 LIGDMLCHVNLIPVNYVPERDYVRTPRNEIFQFKRILEEKGINVTIRREQGSDIAAACGQ 345
Query: 365 LKSLSKRIP 373
L++ +
Sbjct: 346 LRAQHAKET 354
>gi|237745509|ref|ZP_04575989.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
gi|229376860|gb|EEO26951.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
Length = 387
Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats.
Identities = 154/383 (40%), Positives = 218/383 (56%), Gaps = 20/383 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+G +L E + R Q+ +WI+ G+ DF GM+D+++ +R L
Sbjct: 5 RTNLLGFTPVQLVEYCKTL----NEKPFRAKQLQRWIHQSGVSDFAGMTDLAKSLRGKLE 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ P+++ + +S DGTRKWLL G IETVYIPE +RGTLCVS+Q GC+
Sbjct: 61 GCAEVRAPKVLKDHLSADGTRKWLLDV-----GEGNAIETVYIPEDNRGTLCVSTQAGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q RNLT +EI+ Q+ +A + + M R+ISN+VMM
Sbjct: 116 VNCLFCSTGKQGFSRNLTTDEIIGQLWMAEFAIR------RSKNMAANQSERQISNVVMM 169
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFD +L + D S+RR+T+STSG VP I R+ +E V LA+SLHA
Sbjct: 170 GMGEPLFNFDASVNALKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECPVALAVSLHA 229
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
S+ LR++LVP+NRK+PL L+ ACR Y + ITFEY ML GIND+ A L+++
Sbjct: 230 PSDKLRDMLVPLNRKHPLSELMAACRRYLEYAPRDFITFEYCMLDGINDTDEHAKELVEL 289
Query: 306 LKG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+K + K+NLIPFN P S I F++ + +G + +R RG DI AA
Sbjct: 290 VKHGSDPVSCKLNLIPFNSIPMPGLKRSSDARISAFAKILLDAGIVTTVRKTRGEDIEAA 349
Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
CG L + +V R+ M +G
Sbjct: 350 CGLLAGDVRDRTRV-RERMAESG 371
>gi|308173538|ref|YP_003920243.1| Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens DSM
7]
gi|307606402|emb|CBI42773.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus
amyloliquefaciens DSM 7]
Length = 363
Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats.
Identities = 118/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ S+ +E+++ L + G R +QI++W+Y + + F M+++S+ +R L
Sbjct: 16 EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 ESNFVMTTMKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MG+GEP NF+ + L I + GL+ R IT+STSG +P I +++ + AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PIN+ Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 292 ELLKGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 352 QLRAKERQ 359
>gi|28897379|ref|NP_796984.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus RIMD 2210633]
gi|153838534|ref|ZP_01991201.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
gi|260363554|ref|ZP_05776383.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
gi|260876339|ref|ZP_05888694.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
gi|260898610|ref|ZP_05907106.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
gi|260899290|ref|ZP_05907685.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
gi|81728415|sp|Q87S19|RLMN_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|28805591|dbj|BAC58868.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149748049|gb|EDM58908.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
gi|308086920|gb|EFO36615.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
gi|308092880|gb|EFO42575.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
gi|308106603|gb|EFO44143.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
gi|308113028|gb|EFO50568.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
Length = 375
Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats.
Identities = 143/384 (37%), Positives = 206/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE+ R TLCVSSQV
Sbjct: 59 KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMGHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAALKAARG 366
>gi|229918582|ref|YP_002887228.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
sp. AT1b]
gi|229470011|gb|ACQ71783.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
Length = 361
Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats.
Identities = 128/372 (34%), Positives = 198/372 (53%), Gaps = 26/372 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL + ELE +++ G R Q++ W+YV+ + F M+++ + +R L
Sbjct: 15 KPSLYSLTFPELEAWVIEAG----EKAFRAKQLYDWMYVKRVTTFDDMTNVPKALRDKLE 70
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 71 ASFQLTTLKELVKQESQDGTIKFLFELQ-----DGYSIETVLMRHEYGNSICVTTQVGCR 125
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNL A EI QVL + L + G ++ +IV+M
Sbjct: 126 IGCTFCASTLGGLKRNLEAGEITAQVLDVQRALD--------------ATGERVDSIVVM 171
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+D + + L + GL+ R IT+STSG VP I + +E + + AISLH
Sbjct: 172 GIGEPFDNYDELMRFLRTVNHDNGLNIGARHITVSTSGIVPKIYKFADEGMRINFAISLH 231
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +LR L+PINR + L+ L+DA R+Y S RRITFEY + G+ND+ A L
Sbjct: 232 APTTELRTKLMPINRAFDLDKLMDAVRYYTEKS-GRRITFEYGLFGGVNDTEEYAHLLAD 290
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGI +NLIP N +Y+ + + I F + +K + IR +G DI AACGQ
Sbjct: 291 LLKGIKCHVNLIPVNHVLERDYVRTPRAQIFAFEKVLKDRNVNVTIRREQGSDIDAACGQ 350
Query: 365 LKSLSKRIPKVP 376
L++ +R +
Sbjct: 351 LRAK-EREQETR 361
>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
gi|205829923|sp|A1WE19|RLMN_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
Length = 391
Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats.
Identities = 148/383 (38%), Positives = 213/383 (55%), Gaps = 22/383 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +L+ R+ L + ++G R R +Q+++WI+ RG DF MSD+++ +R
Sbjct: 1 MSTTNLLEFDRDGLADFCARLG----EKRFRATQLFRWIHQRGASDFDAMSDLARALRDK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + P ++ + S DG+ KWL G +E V+IPE RGTLCVSSQ G
Sbjct: 57 LKGCARVQAPPVISGQASADGSVKWLFDV-----GAGNAVEAVFIPEDERGTLCVSSQAG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG Q RNL++ EI+ Q+ A L + + R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALR----------RRLKTEDRVISNLV 161
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N + +L + D G S+RR+T+STSG VP I R+ + V LA+SL
Sbjct: 162 MMGMGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCPVALAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ LR+ LVP+NRKYP++ L+ AC+ Y + ITFEY ML G+ND A L+
Sbjct: 222 HAPNDALRDQLVPLNRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLV 281
Query: 304 KILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+++ I K NLIPFNP+P L S I+ F++ + +G + +R RG DI AA
Sbjct: 282 ELVGRAAIRCKFNLIPFNPFPASGLLRSAHDQILAFAQVLGAAGIVTTVRKTRGDDIAAA 341
Query: 362 CGQLKSLSKRIPKV-PRQEMQIT 383
CGQL + +V R Q T
Sbjct: 342 CGQLAGDVRDRTRVAERMAKQRT 364
>gi|254228668|ref|ZP_04922092.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
gi|262395120|ref|YP_003286974.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
gi|151938847|gb|EDN57681.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
gi|262338714|gb|ACY52509.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
Length = 375
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 143/380 (37%), Positives = 207/380 (54%), Gaps = 23/380 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ DF+ M++I++++R
Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW + ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLLHKCEIKAPTVAEAQHSSDGTIKWAMNVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEM 380
ACGQL I + R M
Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360
>gi|321315341|ref|YP_004207628.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
BSn5]
gi|320021615|gb|ADV96601.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
BSn5]
Length = 363
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 120/368 (32%), Positives = 203/368 (55%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ S+ +E+++ L G R +QI++W+Y + + F+ M+++S+++R L
Sbjct: 16 ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKDLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N HF + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 NTHFVLTTLKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MG+GEP NF+ + L I + GL+ R IT+STSG +P I +++ + AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+G+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 352 QLRAKERQ 359
>gi|289670467|ref|ZP_06491542.1| hypothetical protein XcampmN_18763 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 401
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 164/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 22 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHRRYVTDFDQMTDLGKPLRAKLH 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 245 ANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 372
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 150/381 (39%), Positives = 205/381 (53%), Gaps = 23/381 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ + + + R QI KWIY G DF M++I++++R L
Sbjct: 5 KVNLLDFDRKGMRKFFAE---ELEEKAFRADQIMKWIYHFGCDDFDQMTNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I P + + S DGT KW +R ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 VIAEIKAPTVSAAQYSKDGTIKWAMRVGD------QDVETVYIPDDDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A +G + + R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLCVSEIIGQVWRAAKEIG----------VQKETGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLLPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ +E +DA R Y +N R+T EYV+L IND A L
Sbjct: 226 PTDELRSQIMPINNRWNIEEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDDMEHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LK PAKINLIPFNP+PG Y I F + + + +R RG DI AACG
Sbjct: 286 KVLKDTPAKINLIPFNPYPGSPYNKPSNSRIDRFMKTLMEYDITVTVRKTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QL I + R + + G
Sbjct: 346 QLVGDV--IDRTKRTQAKQQG 364
>gi|70726698|ref|YP_253612.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
haemolyticus JCSC1435]
gi|123776132|sp|Q4L5R9|RLMN_STAHJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|68447422|dbj|BAE05006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 364
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E++E L++ G + R QI++W+Y + + M+++S+++R +L
Sbjct: 17 EKQSIYSLRYDEMQEWLVEHG----QQKFRAKQIFEWLYQKRVDSIDDMTNLSKDLRQVL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 KDNFAMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATDERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R+ L+PINR Y ++ L++A ++Y +N R+TFEY + G+ND A +L
Sbjct: 234 HAAKDEIRSKLMPINRAYHVDKLMEAIKYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|329767014|ref|ZP_08258542.1| ribosomal RNA large subunit methyltransferase N [Gemella
haemolysans M341]
gi|328837739|gb|EGF87364.1| ribosomal RNA large subunit methyltransferase N [Gemella
haemolysans M341]
Length = 377
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 202/368 (54%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K S+ + ++LEE ++ IG + R QI+ W+Y + + DF M ++ + ++ L
Sbjct: 19 DKMSIYSLRLDQLEEYIVSIG----EKKFRAKQIYDWLYKKRVTDFSEMKNVPKSLQEKL 74
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + + ++ S DGT K+L + IE+V + K +LCV++QVGC
Sbjct: 75 AEEFEITTLKTIIKQESADGTMKFLFELQDK-----YTIESVLMKNKYGNSLCVTTQVGC 129
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L G +IS+IV+
Sbjct: 130 RIGCTFCASTLGGLKRNLDAGEIVSQVLKVQQELD--------------KKGERISSIVI 175
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + + I + + R IT+STSG VP I E + A+SL
Sbjct: 176 MGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR+ ++P+NR Y ++ L++A ++Y +N RITFEY ++ +ND A L
Sbjct: 236 HAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTNR-RITFEYGLMGKVNDQKEHAEKLS 294
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+I+KG+ +NLIP N P Y+ + + DI F + +K++ + IR +G DI AACG
Sbjct: 295 EIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKILKKNKVNVTIRRTQGDDIDAACG 354
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 355 QLRAKERK 362
>gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 356
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 155/367 (42%), Positives = 205/367 (55%), Gaps = 23/367 (6%)
Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
+G R Q+ KW+Y +F M+DI++ +R L + I PE+V+
Sbjct: 1 ARVFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVE 56
Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+L C FC T Q
Sbjct: 57 EQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 110
Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
RNL EI+ QV A ++G + R I+N+VMMGMGEPL N NV
Sbjct: 111 FNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMMGMGEPLLNLTNV 160
Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA ++ +R+ +VPI
Sbjct: 161 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPI 220
Query: 258 NRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
N+KY +E + A R Y SNA R+T EYVML +ND A L ++LK P KINL
Sbjct: 221 NKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINL 280
Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPK 374
IP+NP+PG Y S I FS+ + G+++ +R RG DI AACGQL R +
Sbjct: 281 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKR 340
Query: 375 VPRQEMQ 381
R+ MQ
Sbjct: 341 TLRKRMQ 347
>gi|91225141|ref|ZP_01260363.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
gi|91190084|gb|EAS76355.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
Length = 375
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 143/380 (37%), Positives = 208/380 (54%), Gaps = 23/380 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ DF+ M++I++++R
Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLLHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDEMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEM 380
ACGQL I + R M
Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360
>gi|289551002|ref|YP_003471906.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis HKU09-01]
gi|289180534|gb|ADC87779.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis HKU09-01]
Length = 364
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 129/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E+++ L++ G + R QI++W+Y + + F+ M+++S+++R LL
Sbjct: 17 DKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF + V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 ADHFVMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG VP I +E I + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEGIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +D+R+ L+PINR Y ++ L++A R+Y +N RITFEY + G+ND A L
Sbjct: 234 HAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR-RITFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|153873084|ref|ZP_02001783.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152070449|gb|EDN68216.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 358
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 154/354 (43%), Positives = 206/354 (58%), Gaps = 15/354 (4%)
Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
++G R +Q+ KWI+ + + DF M+++S+ +R L + I P++ +
Sbjct: 6 FFEELG----EKPFRATQVMKWIHQQAVLDFDAMTNLSKTLRQRLKEIACISLPQVYKTQ 61
Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
IS D TRKWLL+ IE V+IPE RGTLC+SSQ+GC+L CSFC T Q
Sbjct: 62 ISQDDTRKWLLQL-----DNGNSIEMVFIPEDGRGTLCISSQIGCALDCSFCATAQQGFN 116
Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
RNL EI+ Q+ LA L + + R ISN+VMMGMGEPL N +NV K
Sbjct: 117 RNLNTAEIIAQLWLAEHQL------CSTKDDRPKNYQRTISNVVMMGMGEPLTNLNNVIK 170
Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
++ I D G S +RITLST+G VP R+ E+ V LA+SLHA + LR+ LVPIN+
Sbjct: 171 AIKIMKDDFGYGLSWQRITLSTAGIVPAFKRLKEQCPVSLAVSLHAPDDALRDQLVPINK 230
Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
KYP+ L+ ACR Y R ITFEY+MLK INDS A L+K+++GIPAK+NLIPFN
Sbjct: 231 KYPINELLAACRAYVKGEPRRTITFEYIMLKNINDSQSHAHALVKLIQGIPAKVNLIPFN 290
Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
+P Y S K I F + + ++G + R RG DI AACGQL +
Sbjct: 291 TFPDTPYQSSSIKTIDDFRDILLKAGLITITRKTRGDDIDAACGQLAGKVRDKT 344
>gi|269965168|ref|ZP_06179302.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269830154|gb|EEZ84381.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 375
Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats.
Identities = 143/380 (37%), Positives = 208/380 (54%), Gaps = 23/380 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ DF+ M++I++++R
Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLLYKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEM 380
ACGQL I + R M
Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360
>gi|168214217|ref|ZP_02639842.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str.
F4969]
gi|170714277|gb|EDT26459.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str.
F4969]
Length = 347
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 140/368 (38%), Positives = 212/368 (57%), Gaps = 27/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L++
Sbjct: 2 KNILDFTLEELKEWMKENG----ESAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F I PE++D S + + +L +G IE V + K ++CVS+Q+GC +
Sbjct: 58 NFYIGIPEVIDYLSSSEDGTRKILL----GLGDGNIIECVIMRYKYGNSICVSTQIGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + + +VRNLTA EIL +VL+ + LLG+ +ISNIV+MG
Sbjct: 114 GCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
GEPL N+DNV K L + + GL+ +R ITLST G VP I + + E+ V LAISLHA
Sbjct: 157 SGEPLDNYDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIHEMADKEMQVTLAISLHA 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
VS++ R ++PI KY + ++DAC +Y + RRITFEY ++ G+ND+ DA +L ++
Sbjct: 217 VSDEKRKTIMPIANKYSISEILDACNYYIEKT-GRRITFEYSLVSGVNDTKEDAKSLGRL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N E+ S +KDI TF +K G + +R G DI AACGQL
Sbjct: 276 LKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQL 335
Query: 366 KSLSKRIP 373
+ +
Sbjct: 336 RRSYIKSK 343
>gi|315658497|ref|ZP_07911369.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
gi|315496826|gb|EFU85149.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
Length = 364
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 129/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E+++ L++ G + R QI++W+Y + + F+ M+++S+++R LL
Sbjct: 17 DKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF + V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 ADHFVMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG VP I +E I + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEEIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +D+R+ L+PINR Y ++ L++A R+Y +N RITFEY + G+ND A L
Sbjct: 234 HAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR-RITFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A]
gi|205829748|sp|A5EVN1|RLMN_DICNV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 364
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 153/377 (40%), Positives = 221/377 (58%), Gaps = 20/377 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L + L + + G R Q+ KW+Y + DF+ M+D+S+++R
Sbjct: 1 MTEKINLFDYTPKALADWFVAQG----EQPFRAKQVLKWLYHERVYDFERMTDLSKKLRA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L++ +I P+++ +K + DGTRKW+ ++ IE V+IPE RGTLC+SSQ
Sbjct: 57 MLSEKACVILPQVIADKTARDGTRKWVFQYACTNS-----IEAVFIPEDDRGTLCISSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T RNLT EI++QV LA+ L+ R I+N+
Sbjct: 112 GCALACPFCSTARAGFNRNLTTGEIVVQVWLAKELV----------HCERNGNSRLITNV 161
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V+MGMGEPL NF+ V + I G SKRR+TLSTSG VP I ++ E + LA+S
Sbjct: 162 VLMGMGEPLINFNQVLPATEIFMSDWGFGLSKRRVTLSTSGVVPAIHKLREVTDLSLAVS 221
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301
LHA +++LRN +VPIN++Y L+ LI+AC Y + IT+EYVMLKG+ND+ A
Sbjct: 222 LHAPNDELRNKIVPINQRYGLKALIEACALYAENNKQHGGITWEYVMLKGVNDTLEHAQQ 281
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L+ +P KINLIPFN +P + CS +DIV F + ++++GY + IR RG DI AA
Sbjct: 282 LADLLRNVPGKINLIPFNEFPNSPFQCSSWEDIVRFQQFLQKAGYIATIRKTRGDDIDAA 341
Query: 362 CGQLKSLSKRIPKVPRQ 378
CGQL + RQ
Sbjct: 342 CGQLVGRVNDRIRRERQ 358
>gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 373
Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 207/378 (54%), Gaps = 21/378 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + + R QI KWIY G DF M++I++++R L
Sbjct: 5 KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P + + + S DGT KW +R ++ETVYIP++ R TLCVSSQVGC+
Sbjct: 62 RVAEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPDEDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A +G + + R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------VQKETGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ +E +DA R Y +N R+T EYV+L +ND A L
Sbjct: 226 PTDELRSQIMPINNRWDIETFLDAVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI AACG
Sbjct: 286 KVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQ 381
QL K + ++
Sbjct: 346 QLVGDVIDRTKRTQAKLN 363
>gi|15640776|ref|NP_230406.1| hypothetical protein VC0757 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|81623203|sp|Q9KTX3|RLMN_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
Length = 373
Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats.
Identities = 150/384 (39%), Positives = 206/384 (53%), Gaps = 22/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ +E ++ R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++LKG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 283 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K + Q G
Sbjct: 343 ACGQLVGDVIDRTK-RTKAKQFDG 365
>gi|254506728|ref|ZP_05118868.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
gi|219550309|gb|EED27294.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
Length = 374
Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats.
Identities = 143/384 (37%), Positives = 204/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + R Q+ KWIY G+ +F M++I++++R
Sbjct: 2 TTEKINLLDFDRQGMRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLQHRCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAMIKAAKG 366
>gi|304404145|ref|ZP_07385807.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
gi|304347123|gb|EFM12955.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
Length = 356
Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats.
Identities = 126/371 (33%), Positives = 200/371 (53%), Gaps = 25/371 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + EEL+ + G P R Q++ W+YV+ +R F MS++ + R L+
Sbjct: 10 KPFIYDYTLEELQAWVKDNGEPA----FRAGQLFDWLYVKRVRSFDEMSNLPKAFRQKLD 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F+ + + + S DGT K+L IETV + ++CV++QVGC
Sbjct: 66 DQFAFVTLSEITKFESKDGTVKFLFGLH-----DNHAIETVVMRHNYGNSICVTTQVGCR 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNLTA EI+ QV+ A+ LL + ++S+IV+M
Sbjct: 121 VGCTFCASTLGGLKRNLTAGEIVAQVVWAQQLLD--------------ATNERVSSIVIM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N++ L I GL+ +R IT+STSG VPNI + +E + LAIS+H
Sbjct: 167 GTGEPFENYEPTMNFLRIMIHEKGLNIGQRHITVSTSGIVPNIYKFADENTQINLAISIH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ L+P+NR++P ++++ R+Y + RRITFEY ++ G+ND P A L +
Sbjct: 227 APNDALRSKLMPVNRRFPFNDVMESLRYYIAKT-GRRITFEYALIGGVNDRPEHAEELAQ 285
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+ +NLIP N P Y+ + + DI F +++ ++ IR +G DI AACGQ
Sbjct: 286 VLQGMLCHVNLIPVNHVPERNYVRTPRDDIFEFQRILEKHKINATIRREQGHDIAAACGQ 345
Query: 365 LKSLSKRIPKV 375
L++
Sbjct: 346 LRAKHMESTAR 356
>gi|18310722|ref|NP_562656.1| radical SAM enzyme, Cfr family [Clostridium perfringens str. 13]
gi|110801148|ref|YP_696426.1| radical SAM protein [Clostridium perfringens ATCC 13124]
gi|168207267|ref|ZP_02633272.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str.
JGS1987]
gi|168210627|ref|ZP_02636252.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC
3626]
gi|168217027|ref|ZP_02642652.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239]
gi|182625883|ref|ZP_02953649.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str.
JGS1721]
gi|81766963|sp|Q8XJL6|RLMN_CLOPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123049744|sp|Q0TPL4|RLMN_CLOP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|18145403|dbj|BAB81446.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110675795|gb|ABG84782.1| radical SAM enzyme, Cfr family [Clostridium perfringens ATCC 13124]
gi|170661362|gb|EDT14045.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str.
JGS1987]
gi|170711321|gb|EDT23503.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC
3626]
gi|177908917|gb|EDT71409.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str.
JGS1721]
gi|182380930|gb|EDT78409.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239]
Length = 347
Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats.
Identities = 140/368 (38%), Positives = 212/368 (57%), Gaps = 27/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L++
Sbjct: 2 KNILDFTLEELKEWMKENG----ESAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F I PE++D S + + +L +G IE V + K ++CVS+Q+GC +
Sbjct: 58 NFYIGIPEVIDYLSSSEDGTRKILL----GLGDGNIIECVIMRYKYGNSICVSTQIGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + + +VRNLTA EIL +VL+ + LLG+ +ISNIV+MG
Sbjct: 114 GCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
GEPL N+DNV K L + + GL+ +R ITLST G VP I + + E+ V LAISLHA
Sbjct: 157 SGEPLDNYDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLHA 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
VS++ R ++PI KY + ++DAC +Y + RRITFEY ++ G+ND+ DA +L ++
Sbjct: 217 VSDEKRKTIMPIANKYSISEILDACNYYIEKT-GRRITFEYSLVSGVNDTKEDAKSLGRL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N E+ S +KDI TF +K G + +R G DI AACGQL
Sbjct: 276 LKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQL 335
Query: 366 KSLSKRIP 373
+ +
Sbjct: 336 RRSYIKSK 343
>gi|222151049|ref|YP_002560203.1| hypothetical protein MCCL_0800 [Macrococcus caseolyticus JCSC5402]
gi|222120172|dbj|BAH17507.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 363
Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats.
Identities = 128/374 (34%), Positives = 206/374 (55%), Gaps = 25/374 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K S+ + EL+E L G R QI+ W+YV+ + F+ MS++S+E+
Sbjct: 12 MPNFDKPSIYSLQLGELKEWLATHG----QQSFRAKQIYDWLYVKRVNSFEEMSNLSKEL 67
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R +L +F++ + V ++ S DGT K+L IETV + ++CV++
Sbjct: 68 RKVLEDNFTMTTLKTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTT 122
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C+FC + L RNL A EI+ QVL + L + ++S
Sbjct: 123 QVGCRIGCTFCASTLGGLKRNLEAGEIVAQVLNVQKALDEV--------------EERVS 168
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
++V+MG+GEP N++ + L + + GL+ R IT+STSG +P I +E +
Sbjct: 169 HVVIMGIGEPFENYEEMMDFLKVINHDDGLNIGARHITVSTSGIIPRIYDFADEELQINF 228
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH +ND+R+ L+PINR Y LE L+++ +Y + RRITFEY + G+ND A
Sbjct: 229 ALSLHGPNNDIRSRLMPINRAYDLEKLMESIEYYVNKT-GRRITFEYGLFGGVNDQVHHA 287
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +++K + +NLIP N P +Y+ + ++DI F + +KR+G ++ IR G DI
Sbjct: 288 KELAQLIKHLNCHVNLIPVNHVPERDYVRTPKEDIFKFEKELKRNGINATIRREHGSDID 347
Query: 360 AACGQLKSLSKRIP 373
AACGQL++ ++
Sbjct: 348 AACGQLRAKERQEE 361
>gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227080936|ref|YP_002809487.1| hypothetical protein VCM66_0715 [Vibrio cholerae M66-2]
gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|254807221|sp|C3LT10|RLMN_VIBCM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3894-4]
Length = 373
Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats.
Identities = 150/384 (39%), Positives = 206/384 (53%), Gaps = 22/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G DF M++I++++R
Sbjct: 2 TTEKVNLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ +E ++ R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++LKG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 283 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K + Q G
Sbjct: 343 ACGQLVGDVIDRTK-RTKAKQFDG 365
>gi|228474965|ref|ZP_04059693.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119]
gi|314936620|ref|ZP_07843967.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp.
hominis C80]
gi|228270950|gb|EEK12338.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119]
gi|313655239|gb|EFS18984.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp.
hominis C80]
Length = 364
Score = 362 bits (928), Expect = 6e-98, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 204/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL
Sbjct: 17 EKQSIYSLRYDEMQNWLVEHG----QQKFRAKQIFEWLYQKRVDTIDEMTNLSKDLRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F + V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 KDNFVMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATNERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFADEQIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R+ L+PINR Y + L++A ++Y +N RITFEY + G+ND A +L
Sbjct: 234 HAAKDEIRSKLMPINRAYNVGKLMEAIKYYQEKTNR-RITFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
Length = 377
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 150/384 (39%), Positives = 206/384 (53%), Gaps = 22/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G DF M++I++++R
Sbjct: 6 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 62
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV
Sbjct: 63 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 116
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 117 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 166
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 167 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 226
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ +E ++ R Y SNA R +T EYV+L +ND A
Sbjct: 227 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 286
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++LKG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 287 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 346
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K + Q G
Sbjct: 347 ACGQLVGDVIDRTK-RTKAKQFDG 369
>gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
Length = 373
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 146/384 (38%), Positives = 207/384 (53%), Gaps = 22/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQV
Sbjct: 59 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN ++ ++ + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342
Query: 361 ACGQLKSLS-KRIPKVPRQEMQIT 383
ACGQL R + ++
Sbjct: 343 ACGQLVGDVIDRTKRTKAKQFAEQ 366
>gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
gi|225203712|gb|EEG86066.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
Length = 357
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 155/368 (42%), Positives = 209/368 (56%), Gaps = 23/368 (6%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+ E + +G R QI KW+Y DF M+DI++ +R+ L + I PE+
Sbjct: 1 MRELFVSMG----EKPFRADQIMKWMYHYCYDDFDQMTDINKVLRNKLKEIAEIKAPEVS 56
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+L C FC T Q
Sbjct: 57 EEQRSTDGTIKWAIKVGD------QQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 110
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNL EI+ QV A ++G R I+N+VMMGMGEPL N +N
Sbjct: 111 GFNRNLKVSEIIGQVWRAAKIIGSLKETGR----------RPITNVVMMGMGEPLLNLNN 160
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256
V +L I D G SKRR+T+STSG VP + ++ + + V LAISLHA ++D+R+ +VP
Sbjct: 161 VIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVALAISLHAPTDDIRDEIVP 220
Query: 257 INRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
IN+KY + M ++ R Y SNA R+T EYVML INDS A L + LK P KIN
Sbjct: 221 INKKYNIAMFLEGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKIN 280
Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIP 373
LIP+NP+PG Y S I FS+ + G+++ +R RG DI AACGQL R
Sbjct: 281 LIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVIDRTK 340
Query: 374 KVPRQEMQ 381
+ ++ Q
Sbjct: 341 RTLKKRQQ 348
>gi|58582157|ref|YP_201173.1| hypothetical protein XOO2534 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84624049|ref|YP_451421.1| hypothetical protein XOO_2392 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|75435230|sp|Q5GZT3|RLMN_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123521888|sp|Q2P2T0|RLMN_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829944|sp|B2SMB3|RLMN_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|58426751|gb|AAW75788.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84367989|dbj|BAE69147.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 401
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 165/383 (43%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 22 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKLH 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 245 ANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|15615069|ref|NP_243372.1| hypothetical protein BH2506 [Bacillus halodurans C-125]
gi|81786443|sp|Q9K9Y8|RLMN_BACHD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|10175126|dbj|BAB06225.1| BH2506 [Bacillus halodurans C-125]
Length = 362
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 203/368 (55%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + EELE L + G P + R +QI++W+Y + ++ FQ M+++S+++R L +
Sbjct: 17 PSIYTLQFEELEMWLKEQGEP----KFRATQIFEWLYEKRVKQFQEMTNLSKDLRAKLEK 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF++ + V ++ S DGT K+L IETV + ++CV++QVGC L
Sbjct: 73 HFNLTTLKTVTKQQSSDGTIKFLFELH-----DGYSIETVVMRHNYGNSVCVTTQVGCRL 127
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L RNL A EI+ QV+ A+ + + G ++ +IV+MG
Sbjct: 128 GCTFCASTLGGLKRNLEAGEIVAQVVEAQRAMDE--------------QGERVGSIVVMG 173
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
+GEP N+ + L + GL+ R IT+STSG VP I + +E + AISLHA
Sbjct: 174 IGEPFDNYQALMPFLKTVNHDKGLNIGARHITVSTSGVVPKIYQFADEGLQINFAISLHA 233
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR+ L+P+NR +PL L+DA R+Y + RR+TFEY + G ND A L +
Sbjct: 234 PNTELRSKLMPVNRAWPLPKLMDAIRYYIDKT-GRRVTFEYGLFGGENDQVEHAEELADL 292
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K I +NLIP N P +Y+ + + I F +K G + IR +G DI AACGQL
Sbjct: 293 IKDIKCHVNLIPVNYVPERDYVRTPRDQIFAFERTLKERGVNVTIRREQGHDIDAACGQL 352
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 353 RAKERKEE 360
>gi|323499824|ref|ZP_08104783.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
DSM 21326]
gi|323315065|gb|EGA68117.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
DSM 21326]
Length = 374
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 143/375 (38%), Positives = 205/375 (54%), Gaps = 21/375 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G+ +F M++I++++R
Sbjct: 2 TTEKINLLDFDRQGLRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + I+ P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLQRRCEIVAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ +E + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSDIMPINDRWDIEDFLASVRRYIQSSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++LK P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELLKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKV 375
ACGQL K
Sbjct: 343 ACGQLVGDVIDRTKR 357
>gi|205829948|sp|Q3BTW5|RLMN_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 401
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 164/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 22 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAKLH 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVLVPNVVFDKPSADGTHKWLLAM---GADGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 245 ANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQA 385
>gi|78047623|ref|YP_363798.1| radical SAM superfamily protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036053|emb|CAJ23744.1| radical SAM superfamily protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 405
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 164/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 26 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAKLH 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 83 QHAEVLVPNVVFDKPSADGTHKWLLAM---GADGKNAIETVYIPDKGRGTLCVSSQVGCG 139
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 140 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 188
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 189 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 248
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 249 ANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 308
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 309 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 368
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 369 DIDAACGQLKGQV--MDRTRRQA 389
>gi|224476327|ref|YP_002633933.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
carnosus subsp. carnosus TM300]
gi|254807211|sp|B9DPM7|RLMN_STACT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|222420934|emb|CAL27748.1| putative Radical SAM family protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 364
Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 210/370 (56%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + EE+++ L++ G + R QI++W+Y + + M+++S+++R +L
Sbjct: 17 DKQSIYSLRYEEMQDWLVEHG----QQKFRAKQIFQWLYEKRVDSIDEMTNLSKDLREVL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ E V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDNFTMTTLETVVKQESRDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + +L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKVLD--------------ATDERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I + GL+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLKIVNYDNGLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++++R+ L+PINR Y ++ L++A ++Y +N RITFEY + G+ND A L
Sbjct: 234 HAANDEIRSKLMPINRAYSIDKLMEAIQYYQEKTNR-RITFEYGLFGGVNDQLTHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++ + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIQNLNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|239636303|ref|ZP_04677305.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603]
gi|239597658|gb|EEQ80153.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603]
Length = 364
Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL
Sbjct: 17 EKQSIYSLRYDEMQNWLIEHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDNFAMTTLTTVVKQESRDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++R+ L+PINR Y +E L++A +Y +N RITFEY + G+ND A +L
Sbjct: 234 HGAKDEVRSRLMPINRAYNVEKLMEAIEYYQEKTNR-RITFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 396
Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats.
Identities = 146/384 (38%), Positives = 207/384 (53%), Gaps = 22/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G DF M++I++++R
Sbjct: 25 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 81
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQV
Sbjct: 82 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 135
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 136 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 185
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 186 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 245
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN ++ ++ + R Y SNA R +T EYV+L +ND A
Sbjct: 246 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 305
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 306 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 365
Query: 361 ACGQLKSLS-KRIPKVPRQEMQIT 383
ACGQL R + ++
Sbjct: 366 ACGQLVGDVIDRTKRTKAKQFAEQ 389
>gi|147675306|ref|YP_001216242.1| hypothetical protein VC0395_A0286 [Vibrio cholerae O395]
gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
gi|205829925|sp|A5F3F8|RLMN_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
Length = 373
Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats.
Identities = 149/384 (38%), Positives = 205/384 (53%), Gaps = 22/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G DF M++I++++R
Sbjct: 2 TTEKVNLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ +E ++ R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++LK P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 283 ELAELLKRTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K + Q G
Sbjct: 343 ACGQLVGDVIDRTK-RTKAKQFDG 365
>gi|194014876|ref|ZP_03053493.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061]
gi|194013902|gb|EDW23467.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061]
Length = 360
Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ E++E L + Q R +QI++W+Y + + F MS++S+++R L
Sbjct: 15 PSIYSFELHEMKEWLKE----QDEKPFRAAQIFEWLYEKRVTSFDEMSNLSKDLREKLKD 70
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F+I + V ++ S DGT K+L IETV + + ++CV++QVGC +
Sbjct: 71 QFTITTLKTVIKQTSQDGTIKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGCRI 125
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L RNL A EI+ QVL + L + ++S++V+MG
Sbjct: 126 GCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TDERVSSVVIMG 171
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP NF+ + L I + GL+ R IT+STSG +P I + +E + + A+SLHA
Sbjct: 172 IGEPFDNFEEMLAFLKIINHDHGLNIGARHITVSTSGIIPKIYQFADEQMQINFAVSLHA 231
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ ++R+ L+PIN+ Y L L++A +Y + RR++FEY + G+ND A L +
Sbjct: 232 PNTEIRSRLMPINKAYKLPKLMEAIEYYIQKT-GRRVSFEYGLFGGVNDQVHHAEELADL 290
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGI +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACGQL
Sbjct: 291 LKGIKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKERGVNVTIRREQGHDIDAACGQL 350
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 351 RAKERQEE 358
>gi|166712105|ref|ZP_02243312.1| hypothetical protein Xoryp_11775 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 393
Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats.
Identities = 165/383 (43%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 14 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKLH 70
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 71 QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 128 LNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 177 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 237 ANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 296
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 297 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 356
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 357 DIDAACGQLKGQV--MDRTRRQA 377
>gi|285018369|ref|YP_003376080.1| hypothetical protein XALc_1591 [Xanthomonas albilineans GPE PC73]
gi|283473587|emb|CBA16090.1| conserved hypothetical protein 48 [Xanthomonas albilineans]
Length = 401
Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats.
Identities = 162/386 (41%), Positives = 223/386 (57%), Gaps = 26/386 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L
Sbjct: 22 RQNLLDLDREGLERFFAE---TLGEARYRAHQVMKWIHHRYVTDFEQMTDLGKALRAKLQ 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH +I P IV +K S DGT KWLL + G IETVYIP+K RGTLCVSSQVGC
Sbjct: 79 QHAEVIVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKGRGTLCVSSQVGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC T TQ RNL+ EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCSFCSTATQGFNRNLSTAEIVGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSGESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+ AC Y +TFEY ++KGIND P A L +
Sbjct: 245 PNDTLRETLVPLNKKYPIAELMAACARYLRANKRRESVTFEYTLMKGINDQPEHARQLAR 304
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 305 LMRQFDNAVQAANAGKVNLIPFNPFPGTRYARSGETEIRAFQKILLDAQVLTMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQEMQI 382
DI AACGQLK + + +
Sbjct: 365 DIDAACGQLKGQVMDRTRRQAEFQRE 390
>gi|16078638|ref|NP_389457.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
subsp. subtilis str. 168]
gi|221309450|ref|ZP_03591297.1| hypothetical protein Bsubs1_08696 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313775|ref|ZP_03595580.1| hypothetical protein BsubsN3_08632 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318699|ref|ZP_03599993.1| hypothetical protein BsubsJ_08566 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322970|ref|ZP_03604264.1| hypothetical protein BsubsS_08672 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|3287951|sp|O34617|RLMN_BACSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|2337804|emb|CAA74265.1| YloN protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633947|emb|CAB13448.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
subsp. subtilis str. 168]
Length = 363
Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats.
Identities = 119/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ S+ +E+++ L G R +QI++W+Y + + F+ M+++S+++R L
Sbjct: 16 ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKDLREKL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N F + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 72 NTRFVLTTLKTAVKQTSQDGTMKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MG+GEP NF+ + L I + GL+ R IT+STSG +P I +++ + AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L++A ++Y + RRI+FEY + G+ND A L
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKT-GRRISFEYGLFGGVNDQVEHAEELA 291
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+G+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 352 QLRAKERQ 359
>gi|315123120|ref|YP_004065126.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
gi|315016880|gb|ADT70217.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
Length = 376
Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats.
Identities = 165/383 (43%), Positives = 225/383 (58%), Gaps = 21/383 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M KK +L+ + R+ + E + G R Q+ KWIY G+ +F MS++++++
Sbjct: 1 MTEQKKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
+ L I+ PEI + + DGT K+ L G E+E V+IPEK R TLCVSS
Sbjct: 57 KEKLKNECEIVAPEISVRQQASDGTIKYALVLE-----GGQEVEAVWIPEKDRATLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C+FC T Q RNL EI+ QV +G + S R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGNSEKRPVT 161
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
ISLHA N LR+ILVPIN+KYP+E + ACR Y S A + +T EYVML G+NDS A
Sbjct: 222 ISLHAPDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+K LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI
Sbjct: 282 HELVKTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDID 341
Query: 360 AACGQLKSL-SKRIPKVPRQEMQ 381
AACGQL R ++ +++M+
Sbjct: 342 AACGQLAGDVVDRTKRMAKKKMR 364
>gi|110802908|ref|YP_699026.1| ribosomal RNA large subunit methyltransferase N [Clostridium
perfringens SM101]
gi|123341702|sp|Q0SS81|RLMN_CLOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|110683409|gb|ABG86779.1| radical SAM enzyme, Cfr family [Clostridium perfringens SM101]
Length = 347
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 141/368 (38%), Positives = 212/368 (57%), Gaps = 27/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L++
Sbjct: 2 KNILDFTLEELKEWMKENG----ENAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F I PE++D S + + +L +G IE V + K ++CVS+Q+GC +
Sbjct: 58 NFYIGIPEVIDYLSSSEDGTRKILL----GLGDGNIIECVIMKYKYGNSICVSTQIGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + + +VRNLTA EIL +VL+ + LLG+ +ISNIV+MG
Sbjct: 114 GCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
GEPL N+DNV K L I + GL+ +R ITLST G VP I + + E+ V LAISLHA
Sbjct: 157 SGEPLDNYDNVMKFLEIVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLHA 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
VS++ R ++PI KY + ++DAC +Y + RRITFEY ++ G+ND+ DA +L ++
Sbjct: 217 VSDEKRKTIMPIANKYSISEILDACNYYIEKT-GRRITFEYSLVSGVNDTKEDAKSLGRL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N E+ S +KDI TF +K G + +R G DI AACGQL
Sbjct: 276 LKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQL 335
Query: 366 KSLSKRIP 373
+ +
Sbjct: 336 RRSYIKSK 343
>gi|205373324|ref|ZP_03226128.1| YloN [Bacillus coahuilensis m4-4]
Length = 362
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 120/370 (32%), Positives = 207/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + +E++ + + G R +Q+++W+Y++ + F+ M+++S+ +R L
Sbjct: 15 KKPSIFSLELDEIKNWMSENG----EKPFRAAQVFEWLYIKRVTSFEDMTNLSKPLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F + + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 71 TESFEMTTLKTLIQQQSSDGTIKFLFELH-----DGYSIETVLMRHEYGNSVCVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TEERVSSVVI 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N++++ L ++ GL+ R IT+STSG +P I + +E + AISL
Sbjct: 172 MGIGEPFDNYESMMSFLRTINNEKGLNIGARHITVSTSGIIPKIYKFADEKTQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + +LR+ L+PINR Y L L+DA ++Y + RR++FEY + G+NDS A L
Sbjct: 232 HAANTELRSRLMPINRAYKLPDLMDAVKYYIDKT-GRRVSFEYGLFGGVNDSVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + INLIP N P +Y+ + ++ I F + +K+ G + IR +G DI AACG
Sbjct: 291 DLVKDVKCHINLIPVNYVPERDYVRTPKEKIFEFEKALKKRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 345
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 147/363 (40%), Positives = 215/363 (59%), Gaps = 26/363 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + EEL+ + +G R QI +WIY + ++ F M++IS+ R +L+++
Sbjct: 4 IKNLNFEELQNFVQSLGFEN----YRAKQIAQWIYKKRVKSFDEMTNISKAARKVLSENA 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I ++V + S DGT+K+L +E+V+IPEK TLCVS+QVGC + C
Sbjct: 60 KIDVLKLVKVEKSMDGTKKYLFELE-----DGNRVESVFIPEKDWNTLCVSTQVGCPVGC 114
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC T RNLTA EI+ Q + + +G+ ++ISN+V MGMG
Sbjct: 115 KFCLTAKDGFTRNLTAAEIVDQYIHVQRDVGE---------------DKRISNVVFMGMG 159
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVS 247
EP NF+NVKK++ I +D L S R+IT+ST G VP I R+ +E+ V LAISLHA +
Sbjct: 160 EPFLNFENVKKAVEIMTDKNMLDLSTRKITISTVGVVPGIDRMAKEMNKVKLAISLHATT 219
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+++R +VP+NRKYP+ ++ A R YP N RRI EYVML+G+NDS DA L+K++K
Sbjct: 220 DEVREKIVPLNRKYPISEIMAALRRYPA-DNIRRIMIEYVMLEGVNDSVEDAKRLVKLVK 278
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
GIP K+NLIPFN +PG + S ++ F + + ++ IR RG DI AACG L++
Sbjct: 279 GIPVKVNLIPFNSYPGAPFKPSSKEQTEKFQKVLWDHNIAAFIRDSRGQDISAACGMLRT 338
Query: 368 LSK 370
K
Sbjct: 339 KEK 341
>gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
Length = 373
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 146/384 (38%), Positives = 206/384 (53%), Gaps = 22/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + S DGT KW +R ++ETVYIPE+ R TLCVSSQV
Sbjct: 59 KLKAKCEIRAPYVSAAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN ++ ++ + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342
Query: 361 ACGQLKSLS-KRIPKVPRQEMQIT 383
ACGQL R + ++
Sbjct: 343 ACGQLVGDVIDRTKRTKAKQFAEQ 366
>gi|81587943|sp|Q8DEZ6|RLMN_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 374
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 147/385 (38%), Positives = 210/385 (54%), Gaps = 23/385 (5%)
Query: 3 FLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+K +L+ R+ + + ++G R Q+ KWIY G+ DF M++I++++R
Sbjct: 2 STEKINLLVFDRKGMRDLFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLR 57
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L Q I+ P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQ
Sbjct: 58 EKLKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+L C FC T Q RNL EI+ QV A +G + + R I+N
Sbjct: 112 VGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITN 161
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAI
Sbjct: 162 VVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAI 221
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDA 299
SLHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 222 SLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +++K P KINLIPFNP+PG Y I F + + + ++ IR RG DI
Sbjct: 282 HELAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDID 341
Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384
AACGQL K G
Sbjct: 342 AACGQLVGDVIDRTKRTAMLKAAKG 366
>gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
Length = 373
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 146/380 (38%), Positives = 206/380 (54%), Gaps = 22/380 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G DF M++I++++R
Sbjct: 2 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + S DGT KW +R ++ETVYIPE+ R TLCVSSQV
Sbjct: 59 KLKAKCEIRAPYVSAAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN ++ ++ + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A
Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342
Query: 361 ACGQLKSLS-KRIPKVPRQE 379
ACGQL R + ++
Sbjct: 343 ACGQLVGDVIDRTKRTKTKQ 362
>gi|51892489|ref|YP_075180.1| hypothetical protein STH1351 [Symbiobacterium thermophilum IAM
14863]
gi|81610561|sp|Q67PQ7|RLMN_SYMTH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|51856178|dbj|BAD40336.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 371
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 126/370 (34%), Positives = 210/370 (56%), Gaps = 28/370 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++ L GM EE+ + + +G P R R Q+++W+Y +G++DF M+++ +R L
Sbjct: 23 RQPLPGMSLEEMADLMADLGEP----RFRAKQLFQWVYQKGVKDFDAMTNLPARLRQHLA 78
Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ E E+ T K+L R ++E+V + + ++CV++QVGC
Sbjct: 79 GTTMLRLLEKETEQHDRRTGTTKYLFRL-----ADGSQVESVLMRQSWGNSVCVTTQVGC 133
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + LVRNLTA EI+ Q+++ + L G +IS +V+
Sbjct: 134 RMGCTFCASTVGGLVRNLTAGEIVDQIVMMQREL---------------PQGERISTVVL 178
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEPL N+D+V K++ + D GL+ R IT+STSG VP + R+ EE + LA+SL
Sbjct: 179 MGSGEPLENYDHVLKAVRLVHDPEGLNIGYRHITISTSGIVPGMRRLAEEGLPITLALSL 238
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR L+P+ R +PL ++ A R Y + RR+T+EY++++G+ND P +A L
Sbjct: 239 HAPTDELRRQLMPVARIWPLAEVLAAAREYGEKT-GRRVTYEYILIEGVNDGPEEARQLA 297
Query: 304 KILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG A +NLIP NP Y + + F E ++ +G ++ +R G +I AAC
Sbjct: 298 RLLKGALAHVNLIPMNPVAERPQYRRPGPERVNRFKEILESNGIATTVRREMGGEIDAAC 357
Query: 363 GQLKSLSKRI 372
GQL++ ++R
Sbjct: 358 GQLRNRAQRK 367
>gi|188576716|ref|YP_001913645.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576907|ref|YP_001913836.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521168|gb|ACD59113.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521359|gb|ACD59304.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 393
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 165/383 (43%), Positives = 225/383 (58%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+
Sbjct: 14 KQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKLH 70
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC
Sbjct: 71 QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 128 LNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 177 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L +
Sbjct: 237 ANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLAR 296
Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + +I F + + + + +R RG
Sbjct: 297 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTRGD 356
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 357 DIDAACGQLKGQV--MDRTRRQA 377
>gi|242373506|ref|ZP_04819080.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1]
gi|242348869|gb|EES40471.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1]
Length = 364
Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+++R +L
Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNSIDEMTNLSKDLRQVL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDNFAMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++R+ L+PINR Y +E L++A ++Y +N R+TFEY + G+ND A L
Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPREDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
129PT]
gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT]
Length = 365
Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats.
Identities = 154/374 (41%), Positives = 211/374 (56%), Gaps = 22/374 (5%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
+ R+++ ++G R Q+ KWIY G +F M++I++++R L I
Sbjct: 2 NLTRQQMRAFFQELG----EKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKLKTVAEI 57
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
PEI E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+L C+F
Sbjct: 58 KAPEIAVEQRSADGTIKWAMQVGD------QQVETVYIPETDRATLCVSSQVGCALACTF 111
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C T Q RNLT EI+ QV A ++G+F R I+N+VMMGMGEP
Sbjct: 112 CSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVMMGMGEP 161
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDL 250
L N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAISLHA +++L
Sbjct: 162 LLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDEL 221
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLIKILKG 308
RN +VPIN+KY ++ML+++ Y +SN ++T EYVML IND A L ++LK
Sbjct: 222 RNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLAEVLKN 281
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
P KINLIP+NP+P Y S I F + + G++ +R RG DI AACGQL
Sbjct: 282 TPCKINLIPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAACGQLAGD 341
Query: 369 SKRIPKVPRQEMQI 382
K Q+ +
Sbjct: 342 VIDRTKRTAQKKRF 355
>gi|90410870|ref|ZP_01218884.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
gi|90328083|gb|EAS44394.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
Length = 373
Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats.
Identities = 148/381 (38%), Positives = 205/381 (53%), Gaps = 22/381 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+ L + R QI KWIY G DF M++I++++R L
Sbjct: 5 KTNLLDLDRKGLRTYFAE---ELNEKAFRADQIMKWIYQFGCDDFDQMTNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P + + + S DGT KW +R ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 RVAEIRAPYVSEAQHSVDGTIKWAMRVGD------QDVETVYIPDGDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL EI+ QV A +G + + R I+N+VMM
Sbjct: 116 LACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------IEKETGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ + +++ R Y SN R+T EYV+L +ND A L
Sbjct: 226 PTDELRSQIMPINDRFNIATFLESVRRYVEQSNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI AACG
Sbjct: 286 VLLKDTPAKINLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QL K Q Q G
Sbjct: 346 QLVGDVIDRTK-RTQVKQQDG 365
>gi|90579368|ref|ZP_01235178.1| hypothetical protein VAS14_06663 [Vibrio angustum S14]
gi|90440201|gb|EAS65382.1| hypothetical protein VAS14_06663 [Vibrio angustum S14]
Length = 373
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 206/378 (54%), Gaps = 21/378 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + + R QI KWIY G DF M++I++++R L
Sbjct: 5 KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P + + + S DGT KW +R ++ETVYIP++ R TLCVSSQVGC+
Sbjct: 62 RVAEIRAPYVSEAQHSTDGTIKWAMRVGD------QDVETVYIPDEDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A +G + + R I+NIVMM
Sbjct: 116 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------VQKETGRRPITNIVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ +E +D R Y +N R+T EYV+L +ND A L
Sbjct: 226 PTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI AACG
Sbjct: 286 KVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQ 381
QL K + ++
Sbjct: 346 QLVGDVIDRTKRTQAKLN 363
>gi|89072699|ref|ZP_01159264.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
gi|89051519|gb|EAR56973.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
Length = 373
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 207/378 (54%), Gaps = 21/378 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + + R QI KWIY G DF M++I++++R L
Sbjct: 5 KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P + + + S DGT KW +R ++ETVYIP++ R TLCVSSQVGC+
Sbjct: 62 RVAEIRAPHVSEAQYSTDGTIKWAMRVGD------QDVETVYIPDEDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A +G + + R I+NIVMM
Sbjct: 116 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEVG----------IQKDTGRRPITNIVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ + I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIDTIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ +E +D R Y +N R+T EYV+L +ND A L
Sbjct: 226 PTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI AACG
Sbjct: 286 KVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQ 381
QL K + ++
Sbjct: 346 QLVGDVIDRTKRTQAKLN 363
>gi|310642737|ref|YP_003947495.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
polymyxa SC2]
gi|309247687|gb|ADO57254.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa SC2]
Length = 355
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 127/368 (34%), Positives = 198/368 (53%), Gaps = 25/368 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + EEL++ G P R QI+ W+YV+ I +F M+++S+ +R L
Sbjct: 11 KPFIYDLTLEELQDWAKNNGEPA----FRGGQIFDWLYVKRINNFSEMTNLSKALREKLE 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ FS + + + S DGT K+L IETV + ++CV++QVGC
Sbjct: 67 EQFSFVTLHEITKLESKDGTVKFLFGLH-----DDHAIETVIMRHNYGNSICVTTQVGCR 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNLTA EI QV+ A+ +L ++S+IV+M
Sbjct: 122 IGCTFCASTLGGLKRNLTAGEITAQVVQAQKILD--------------KTNERVSSIVIM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N++ L GL+ +R IT+STSG VPNI + +E + LAIS+H
Sbjct: 168 GSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ L+P+NR+YP + ++D+ R+Y + RRI+FEY ++ G+ND A L
Sbjct: 228 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKT-GRRISFEYALIGGVNDQAEHAEELAD 286
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ
Sbjct: 287 VLKDMLCHVNLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAACGQ 346
Query: 365 LKSLSKRI 372
L++ +
Sbjct: 347 LRAKHMEL 354
>gi|209694315|ref|YP_002262243.1| hypothetical protein VSAL_I0726 [Aliivibrio salmonicida LFI1238]
gi|254807148|sp|B6EGY4|RLMN_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|208008266|emb|CAQ78411.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 383
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 147/381 (38%), Positives = 207/381 (54%), Gaps = 23/381 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + R QI KW+Y G DF M++I++++R L
Sbjct: 5 KTNLLDFDRKGLRAFFSE---ELGEKAFRADQIMKWMYHFGCDDFDQMNNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I P + + + S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 QKCEIRAPYVSEAQHSVDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL EI+ Q+ A +G + + R I+N+VMM
Sbjct: 116 LACTFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ SL I D +G SKRR+T+STSG V + ++ ++ V LAISLHA
Sbjct: 166 GMGEPLLNMKNLMPSLDIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGKVDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
++ LR+ ++PIN ++ +E + R Y SN R+T EYV+L IND A L
Sbjct: 226 PTDKLRSEIMPINDRWNIEAFLACVREYIASSNANRGRVTVEYVLLDHINDDMDHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI AACG
Sbjct: 286 ELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRRTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QL I + R +++ G
Sbjct: 346 QLVGDV--IDRTKRTQVKQQG 364
>gi|261405801|ref|YP_003242042.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
Y412MC10]
gi|329926635|ref|ZP_08281048.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|261282264|gb|ACX64235.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
gi|328939176|gb|EGG35539.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 346
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 25/369 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + EEL+ + G P R +QI+ W+YV+ + DF M+++S+E+R L
Sbjct: 2 KPFIYDYSLEELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFAEMTNLSKELRAKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q FS + + + S DGT K+L IETV + ++CV++QVGC
Sbjct: 58 QEFSFVTLTEITKLESKDGTVKFLFGLH-----DDHAIETVIMRHNYGNSICVTTQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNLT+ EI+ QV+ A+ +L G ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLTSGEIVAQVVQAQKILD--------------KTGERVSSIVIM 158
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N++ K L GL+ +R IT+STSG VPNI + EE + LAIS+H
Sbjct: 159 GSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEEDTQINLAISIH 218
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ L+P+NR++P + +I++ R+Y + RRITFEY ++ G+ND A L
Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIESLRYYQAKT-GRRITFEYALIGGVNDQVEHAEELAD 277
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++K + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ
Sbjct: 278 VIKDMNCFVNLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQ 337
Query: 365 LKSLSKRIP 373
L++ +
Sbjct: 338 LRAKHMELR 346
>gi|114332136|ref|YP_748358.1| radical SAM enzyme, Cfr family protein [Nitrosomonas eutropha C91]
gi|122313183|sp|Q0AE39|RLMN_NITEC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|114309150|gb|ABI60393.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosomonas eutropha C91]
Length = 379
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 149/374 (39%), Positives = 210/374 (56%), Gaps = 14/374 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + L ++G R Q+ +W++ G +F MSD+++ R L +
Sbjct: 2 INLLDFNKTGLIHFCEEMG----EKPYRARQLLRWVHRFGKTEFIEMSDLAKTFRQKLME 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ PEI+ + + DGTRKWLL G +E V+IPE +RGTLCVSSQVGC+L
Sbjct: 58 RAVVHPPEIISDHTAGDGTRKWLL-----STGTGNAVEMVFIPEPNRGTLCVSSQVGCAL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD-----FPGCEDIEGMVIPSVGRKISN 181
CSFC TG Q RNL+ EI+ Q+ A LL F R ++N
Sbjct: 113 ACSFCSTGRQGFNRNLSVAEIIGQLWWANRLLEGQVGELFSPDVAQIRADNTDTRRPVTN 172
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL NF+NV +L + S+RR+T+STSG VP + R+ E V LA+
Sbjct: 173 VVMMGMGEPLANFENVVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAV 232
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++ LR+ LVPIN+KYP+ L+ AC Y + ITFEYVML+ +NDS A
Sbjct: 233 SLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLRDVNDSIALARE 292
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++++ IP K+NLIPFN + G Y S+ I F + + ++G + +R RG DI AA
Sbjct: 293 LVQVVRNIPCKLNLIPFNTFAGSGYERSNTDAIDNFRDVLMQAGIVTTVRKTRGDDIAAA 352
Query: 362 CGQLKSLSKRIPKV 375
CGQL K +
Sbjct: 353 CGQLAGQVKDKTRR 366
>gi|323342528|ref|ZP_08082760.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322463640|gb|EFY08834.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 347
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 204/370 (55%), Gaps = 25/370 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+S+ G E+ + G R R Q+++W+Y + + F MSD+S +R L Q
Sbjct: 2 KSIYGYDLNEMGDLFESYG----EKRFRAKQLFQWLYQKRVTSFDDMSDLSISLREKLKQ 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + ++V ++++ D T K+LL IETV + ++CV+SQVGC++
Sbjct: 58 DFELDTLKVVMKQVASDETTKFLLE-----CSDGALIETVMMKHDYGYSVCVTSQVGCAM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC +G K RNLT+ E++ Q++ + L + +++S+IV+MG
Sbjct: 113 GCKFCASGLLKKKRNLTSAEVVNQIMFVQRHLDE--------------QDKRVSHIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
+GEP N+DN+ + + I + GL R IT+STSG P I + +E V LAISLHA
Sbjct: 159 IGEPFDNYDNIMRFIRIVNHDHGLGIGARHITISTSGVAPVIKKFADEQTQVNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ LR+ ++P+N+ + LE L DA ++Y SN R+TFEY+++ +ND A L+ +
Sbjct: 219 PNDTLRSEIMPVNKMFNLEKLFDALKYYQSKSNR-RLTFEYILIDNVNDQIAQAKELVAL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G+ A +NLIP+N + + + F + +KR+G IR +G +I AACGQL
Sbjct: 278 IRGMNAYVNLIPYNEVDENPFRQTKPEQAAKFYDYLKRNGIQCTIRREKGSEIDAACGQL 337
Query: 366 KSLSKRIPKV 375
++ ++ K
Sbjct: 338 RANVEKQRKQ 347
>gi|213963853|ref|ZP_03392101.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno]
gi|213953533|gb|EEB64867.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno]
Length = 350
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 133/373 (35%), Positives = 204/373 (54%), Gaps = 24/373 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++K + + +EEL G R +Q+++W++ +G+ F+ M+ + + R
Sbjct: 1 MMQKRDIRALTKEELRTFFESNG----DKAFRGNQVYEWLWQKGVHTFEAMTSLPKATRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L +HFSI + ++ + S DGT K +R + +E+V IP +R T CVSSQV
Sbjct: 57 MLAEHFSINHIKVDVMQRSNDGTIKNAVRLH-----DGLLVESVLIPTDTRTTACVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCSL CSFC T K +RNL +EI QV + + GR +SNI
Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQVKVI-------------DEQSRAFFGRPLSNI 158
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEPL N++NV K++ + GL S +RITLSTSG I ++ ++ LA+
Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ +R ++P N ++PLE L DA ++ + RIT+EYV+ KGIND +D
Sbjct: 219 SLHSAIGSVRTGIMPFNEQFPLEELRDALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
LIK K P+K+NLI +NP ++ +D K + + ++ +G + +R RG DI AA
Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGDFQQADPKALELYQTMLEAAGITVTVRHSRGKDIDAA 337
Query: 362 CGQLKSLSKRIPK 374
CGQL + + K
Sbjct: 338 CGQLANKKVKSEK 350
>gi|329770490|ref|ZP_08261868.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
M325]
gi|328836239|gb|EGF85908.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
M325]
Length = 377
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 127/368 (34%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K S+ + ++LEE ++ IG + R QI+ W+Y + + DF M +I + ++ L
Sbjct: 19 EKMSIYSIRLDQLEEYMISIG----EKKFRAKQIYDWLYKKRVTDFSEMKNIPKSLQEKL 74
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
F I + ++ S DGT K+L + IE+V + K +LCV++QVGC
Sbjct: 75 KDEFEITTLNTIIKQESADGTMKFLFELQDK-----FTIESVLMRNKYGNSLCVTTQVGC 129
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L G +IS+IV+
Sbjct: 130 RIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQELD--------------KKGERISSIVI 175
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + + I + + R IT+STSG VP I E + A+SL
Sbjct: 176 MGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPRIYDFANENIQINFAVSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR+ ++P+NR Y ++ L++A R+Y +N RITFEY ++ +ND A L
Sbjct: 236 HAPTNELRSKIMPVNRAYNIDKLMEALRYYQKTTNR-RITFEYGLMGKVNDQKEHAEKLS 294
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+I+KGI +NLIP N P Y+ + + DI F + +K++ + IR +G DI AACG
Sbjct: 295 EIIKGINCHVNLIPINYVPERNYVRTSKNDIFAFEKILKKNKVNVTIRRTQGDDIDAACG 354
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 355 QLRAKERK 362
>gi|260776635|ref|ZP_05885530.1| ribosomal RNA large subunit methyltransferase N [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607858|gb|EEX34123.1| ribosomal RNA large subunit methyltransferase N [Vibrio
coralliilyticus ATCC BAA-450]
Length = 374
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 142/384 (36%), Positives = 206/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ DF+ M++I++++R
Sbjct: 2 TTEKINLLDFDRQGMRKFFAE---ELGEKAFRAEQVMKWIYHFGVDDFEKMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLIHRCEIKAPVVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAMIRAAKG 366
>gi|319401489|gb|EFV89699.1| radical SAM superfamily protein [Staphylococcus epidermidis FRI909]
Length = 364
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R L
Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQTL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDHFAMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++R+ L+PINR Y ++ L++A R+Y +N R+TFEY + G+ND A +L
Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|57866756|ref|YP_188367.1| radical SAM protein [Staphylococcus epidermidis RP62A]
gi|242242500|ref|ZP_04796945.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144]
gi|81674923|sp|Q5HPX3|RLMN_STAEQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|57637414|gb|AAW54202.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis RP62A]
gi|242234074|gb|EES36386.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144]
Length = 364
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R +L
Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDHFAMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++R+ L+PINR Y ++ L++A R+Y +N R+TFEY + G+ND A +L
Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|329729989|gb|EGG66380.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU144]
Length = 364
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R +L
Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDHFAMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++R+ L+PINR Y ++ L++A R+Y +N R+TFEY + G+ND A +L
Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
Length = 372
Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats.
Identities = 178/381 (46%), Positives = 226/381 (59%), Gaps = 25/381 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + E+E ++G R Q KWI+ GI D MS+ S+ +R L
Sbjct: 6 KNLLDYDKVEMELFFQELG----EKSFRAQQALKWIHQEGITDIDKMSNFSKSLRSRLKT 61
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I PEI+ EK S DGT+KWLLR +ETV+IPE+ RGTLCVSSQVGC+L
Sbjct: 62 IAQIDLPEIIIEKKSEDGTKKWLLRLTDANC-----VETVFIPERGRGTLCVSSQVGCAL 116
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC T Q RNLT EI+ QV LA L +SNIVMMG
Sbjct: 117 NCSFCSTAQQGFNRNLTVAEIIGQVWLAVRCLS----------RDSLRHDHTVSNIVMMG 166
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NFD+V K++++ D G FSKRR+TLSTSG VP + R+ + V LAISLHA
Sbjct: 167 MGEPLLNFDSVVKAMNLMMDDFGYGFSKRRVTLSTSGVVPALRRLSKASEVSLAISLHAP 226
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++LR+ LVPIN+KYPL L++ CR+Y + RR+T EYVML+GIND P A LIKIL
Sbjct: 227 NDELRDRLVPINKKYPLSELLEVCRNYFRSEHRRRVTMEYVMLEGINDQPEHARQLIKIL 286
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL- 365
+GIP KINLIPFNP+P Y S Q I F + ++G ++ R RG DI AACGQL
Sbjct: 287 EGIPVKINLIPFNPFPFARYRRSSQITIERFKSILVKAGLNTITRKTRGEDIDAACGQLV 346
Query: 366 -----KSLSKRIPKVPRQEMQ 381
+S KR K +Q
Sbjct: 347 GYVHDRSYHKRHQKAVSTSIQ 367
>gi|223043733|ref|ZP_03613776.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
gi|222442830|gb|EEE48932.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
Length = 364
Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+++R +L
Sbjct: 17 DKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQVL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDNFAMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++R+ L+PINR Y +E L++A ++Y +N R+TFEY + G+ND A +L
Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNR-RVTFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|119471078|ref|ZP_01613637.1| predicted enzyme [Alteromonadales bacterium TW-7]
gi|119445918|gb|EAW27199.1| predicted enzyme [Alteromonadales bacterium TW-7]
Length = 377
Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats.
Identities = 164/379 (43%), Positives = 224/379 (59%), Gaps = 21/379 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+ + E + G R Q+ KWIY G+ +F MS+++++++ L
Sbjct: 6 KKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKLKEKL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I+ PEI + + DGT K+ L G E+E V+IPEK R TLCVSSQVGC
Sbjct: 62 KAECEIVAPEISVRQQASDGTIKYALVLE-----GGQEVEAVWIPEKERATLCVSSQVGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC T Q RNL EI+ QV +G + S R ++N+VM
Sbjct: 117 ALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGNSEKRPVTNVVM 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LAISLH
Sbjct: 167 MGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
A N LR+ILVPIN+KYP+E + ACR Y S A + +T EYVML G+NDS A L+
Sbjct: 227 APDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELV 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI AACG
Sbjct: 287 KTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACG 346
Query: 364 QLKSL-SKRIPKVPRQEMQ 381
QL R ++ +++M+
Sbjct: 347 QLAGDVVDRTKRMAKKKMR 365
>gi|166032715|ref|ZP_02235544.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC
27755]
gi|166027072|gb|EDR45829.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC
27755]
Length = 356
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 126/375 (33%), Positives = 195/375 (52%), Gaps = 29/375 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ ++ +EL++ + IG R QI+ W++ + +F M+++S+ +R
Sbjct: 1 MEKKDIVSYNYDELQDEIKSIG----EKPFRAKQIYAWLHEKLAEEFDEMTNLSKALREK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L+Q + I ++V +IS D T K+L IE+V + ++C+SSQV
Sbjct: 57 LDQAYEIRKVKVVAHQISKVDPTEKFLFELE-----DGNRIESVLMKYNYGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + L RNLT E+L Q+ + + G ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLERNLTTSEMLRQIYQIQKM-----------------TGERVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N+DN K + + SD GL+ S+R IT ST G VPNI R+ E + LA+
Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRSITASTCGIVPNIHRLAGEGLQITLAL 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH S + R L+PI KY L +++AC Y + RR+TFEY ++ +ND P D
Sbjct: 215 SLHGSSQEKRKKLMPIANKYELSEVLEACDDYYKQT-GRRVTFEYSLVADVNDGPDDVKE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ILK +NLIP NP + D K + F ++++G + IR RG DI A
Sbjct: 274 LTGILKHRNCHLNLIPVNPIKERNFKKPDSKKAMEFQNKLEKNGINVTIRRERGSDIDGA 333
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+ + +
Sbjct: 334 CGQLRRRYGAVKEER 348
>gi|314933392|ref|ZP_07840757.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
gi|313653542|gb|EFS17299.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
Length = 364
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R +L
Sbjct: 17 DKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKELRQVL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDNFAMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++R+ L+PINR Y +E L++A ++Y +N R+TFEY + G+ND A +L
Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNR-RVTFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|152976230|ref|YP_001375747.1| radical SAM protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|205829663|sp|A7GRJ4|RLMN_BACCN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|152024982|gb|ABS22752.1| radical SAM enzyme, Cfr family [Bacillus cytotoxicus NVH 391-98]
Length = 362
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E++E L + G P + R QI+ W+Y + +++++ M+++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLREKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TNERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D++ L I + G++ R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDHLMSFLRIVNHEKGINIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + +LR+ L+PINR Y L L++A ++Y + RR+TFEY + G ND A L
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYINRT-GRRVTFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKNRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|89098703|ref|ZP_01171585.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911]
gi|89086665|gb|EAR65784.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911]
Length = 362
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 119/370 (32%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K S+ + +EL++ L + R +QI++W+Y + + F+ M+++S+ +R L
Sbjct: 15 QKPSIYSLQLDELKDWLKEN----NEKAFRAAQIFEWLYQKRVASFEDMTNLSKALRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N+ F++ + + ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 71 NETFTLTTLKTLIQQTSSDGTIKFLFELH-----DGYSIETVLMRHEYGNSVCVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSVVI 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEP N+D++ L I + GL+ R IT+STSG +P I + +E + + A+SL
Sbjct: 172 MGIGEPFDNYDHMMSFLRIINHDDGLNIGARHITVSTSGIIPKIYKFADENMQINFAVSL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L++A R+Y + RR++FEY + +ND A L
Sbjct: 232 HAPNTEIRSRLMPINRAYKLPDLMEAIRYYVDKT-GRRVSFEYGLFGSVNDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG
Sbjct: 291 SLIKGLKCHVNLIPVNYVPERDYVRTPKDQIFAFEKALKNRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|77362060|ref|YP_341634.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
haloplanktis TAC125]
gi|123757670|sp|Q3ID16|RLMN_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|76876971|emb|CAI89188.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
domain [Pseudoalteromonas haloplanktis TAC125]
Length = 376
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 166/383 (43%), Positives = 225/383 (58%), Gaps = 21/383 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M KK +L+ + RE + E G R+ Q+ KWIY G+ +F MS++++++
Sbjct: 1 MTEQKKINLLDLNREGMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDDMSNVNKKL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
+ L I+ PEI + + DGT K+ L G E+E V+IPEK R TLCVSS
Sbjct: 57 KEKLKAECEIVAPEISVRQQAKDGTIKYALVLE-----GGQEVEAVWIPEKERATLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C+FC T Q RNL EI+ QV +G + S R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGHSEKRPVT 161
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMLDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
ISLHA N LR+ILVP+N+KYP+E + ACR Y S A + +T EYVML GINDS A
Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L++ LKG P K+NLIPFNP+PG EY S I FS+ ++ +G + +R PRG DI
Sbjct: 282 HALVQTLKGTPCKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRPRGDDID 341
Query: 360 AACGQLKSL-SKRIPKVPRQEMQ 381
AACGQL R ++ +++M+
Sbjct: 342 AACGQLAGDVVDRTKRLAKKKMR 364
>gi|218234565|ref|YP_002368665.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264]
gi|229152063|ref|ZP_04280258.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
m1550]
gi|254807154|sp|B7HDY7|RLMN_BACC4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|218162522|gb|ACK62514.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264]
gi|228631412|gb|EEK88046.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
m1550]
Length = 362
Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats.
Identities = 127/371 (34%), Positives = 207/371 (55%), Gaps = 25/371 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R
Sbjct: 14 MKKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDK 69
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ F I + ++ S DGT K+L + IETV + + ++CV++QVG
Sbjct: 70 LSNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVG 124
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C+FC + L RNL A EI+ QV+ + L + ++S++V
Sbjct: 125 CRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLV 170
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AIS
Sbjct: 171 VMGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAIS 230
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 231 LHAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEEL 289
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AAC
Sbjct: 290 AALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAAC 349
Query: 363 GQLKSLSKRIP 373
GQL++ ++
Sbjct: 350 GQLRAKERKEE 360
>gi|27467811|ref|NP_764448.1| hypothetical protein SE0893 [Staphylococcus epidermidis ATCC 12228]
gi|251810648|ref|ZP_04825121.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060]
gi|282876350|ref|ZP_06285217.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135]
gi|293366817|ref|ZP_06613493.1| cfr family radical SAM enzyme [Staphylococcus epidermidis
M23864:W2(grey)]
gi|81843839|sp|Q8CSW0|RLMN_STAES RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|27315355|gb|AAO04490.1|AE016746_280 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805808|gb|EES58465.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060]
gi|281295375|gb|EFA87902.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135]
gi|291319118|gb|EFE59488.1| cfr family radical SAM enzyme [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329736269|gb|EGG72541.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU028]
gi|329736607|gb|EGG72873.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU045]
Length = 364
Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R +L
Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDHFAMTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I EE + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++R+ L+PINR Y ++ L++A R+Y +N R+TFEY + G+ND A +L
Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|148979605|ref|ZP_01815610.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
gi|145961690|gb|EDK26987.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
Length = 380
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 143/387 (36%), Positives = 213/387 (55%), Gaps = 27/387 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + + R Q+ KW+Y G+ DF+ M++I++++R L
Sbjct: 5 KVNLLDFDRKGLRKFFTE---ELNEKAFRADQVMKWMYHFGVDDFENMNNINKKLREKLQ 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I+ P + + + S DGT KW + ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 RRCEIVAPVVSEAQHSSDGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ SL I D +G + SKRR+T+STSG V + ++ + I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLMPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A L
Sbjct: 226 PNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++K P KINLIPFNP+PG Y I F + + Y+ +R RG DI AACG
Sbjct: 286 ELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYDYTVTVRKTRGDDIDAACG 345
Query: 364 QL------KSLSKRIPKVPRQEMQITG 384
QL ++ ++ K + + G
Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLVAG 372
>gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
gi|218708638|ref|YP_002416259.1| hypothetical protein VS_0616 [Vibrio splendidus LGP32]
gi|254807223|sp|B7VJT5|RLMN_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32]
Length = 380
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 145/387 (37%), Positives = 211/387 (54%), Gaps = 27/387 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + + R Q+ KWIY G+ DF+ M++I++++R L
Sbjct: 5 KVNLLDFDRKGLRKFFTE---ELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLL 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I+ P + + + S DGT KW + ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 HRCEIVAPIVSEAQHSADGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ SL + D +G S SKRR+T+STSG V + ++ + I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A L
Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++K P KINLIPFNP+PG Y I F + + Y+ +R RG DI AACG
Sbjct: 286 ELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACG 345
Query: 364 QL------KSLSKRIPKVPRQEMQITG 384
QL ++ ++ K + I G
Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLIAG 372
>gi|312884301|ref|ZP_07744010.1| ribosomal RNA large subunit methyltransferase N [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309368074|gb|EFP95617.1| ribosomal RNA large subunit methyltransferase N [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 375
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 141/384 (36%), Positives = 204/384 (53%), Gaps = 21/384 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ L + R Q+ KWIY G+ +F M++I++++R
Sbjct: 2 TTEKVNLLDFDRQGLRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L Q ++ P + + + S DGT KW ++ ++ETVYIPE R TLC+SSQV
Sbjct: 59 KLQQRCTVTAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCISSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ Q+ A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQLWRAAREIG----------LEKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L + D + SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLAFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDALRSEIMPINDRWNIDDFLASVRRYIQSSNANRGKVTIEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L LK P KINLIPFNP+PG Y I F + + + G++ +R RG DI A
Sbjct: 283 ELSHTLKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQLGHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL K G
Sbjct: 343 ACGQLVGDVIDRTKRTAVNKAAKG 366
>gi|73662863|ref|YP_301644.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|123775339|sp|Q49WZ9|RLMN_STAS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|72495378|dbj|BAE18699.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 364
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 209/370 (56%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+S+ + +E+++ L++ G + R QI++W+Y + + D M+++S+E+R +L
Sbjct: 17 EKQSIYSLRYDEMQDWLVQNG----QQKFRAKQIFEWLYEKRVDDIDDMTNLSKELREVL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + + ++CV++QVGC
Sbjct: 73 KDNFTMTTMTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D GL+ R IT+STSG +P I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++++R+ L+PINR Y +E L++A +Y +N RITFEY + G+ND A L
Sbjct: 234 HGANDEIRSRLMPINRAYNVEKLMEAIHYYQEKTNR-RITFEYGLFGGVNDQIEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++ + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIQELNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGADIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERKVE 362
>gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
Length = 380
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 145/387 (37%), Positives = 211/387 (54%), Gaps = 27/387 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + + R Q+ KWIY G+ DF+ M++I++++R L
Sbjct: 5 KVNLLDFDRKGLRKFFTE---ELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLL 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I+ P + + + S DGT KW + ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 HRCEIVAPIVSEAQHSADGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKDTGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ SL + D +G S SKRR+T+STSG V + ++ + I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A L
Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++K P KINLIPFNP+PG Y I F + + Y+ +R RG DI AACG
Sbjct: 286 ELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACG 345
Query: 364 QL------KSLSKRIPKVPRQEMQITG 384
QL ++ ++ K + I G
Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLIAG 372
>gi|261252176|ref|ZP_05944749.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891]
gi|260935567|gb|EEX91556.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891]
Length = 374
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 142/383 (37%), Positives = 207/383 (54%), Gaps = 23/383 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ R+ + + + R Q+ KWIY G+ +F M++I++++R
Sbjct: 2 TTEKINLLDFDRQGMRKFFAE---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV
Sbjct: 59 KLLHRCEIKAPVVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC T Q RNL EI+ QV A +G + + R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
LHA +++LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A
Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A
Sbjct: 283 ELAVLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL I + R +
Sbjct: 343 ACGQLVGDV--IDRTKRTAINKA 363
>gi|197336065|ref|YP_002155383.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
gi|254807222|sp|B5FAW9|RLMN_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
Length = 372
Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats.
Identities = 145/381 (38%), Positives = 208/381 (54%), Gaps = 23/381 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + R Q+ KW+Y G DF M++I++++R L
Sbjct: 5 KINLLDFDRKGLRAFFSE---ELGEKAFRADQVMKWMYHFGCDDFDQMNNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I P + + + S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 NKCEIRAPYVSEAQHSSDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L I D +G + SKRR+T+STSG V + ++ +I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ ++ + + R Y SN R+T EYV+L +ND A L
Sbjct: 226 PTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK PAKINLIPFNP+PG Y I F + + Y+ IR RG DI AACG
Sbjct: 286 ELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QL I + R +++ G
Sbjct: 346 QLVGDV--IDRTKRTKVKQQG 364
>gi|229086417|ref|ZP_04218593.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
Rock3-44]
gi|228696933|gb|EEL49742.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
Rock3-44]
Length = 362
Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E++E L + G P + R QI+ W+Y + +++++ M+++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG+GEP N+DN+ L I + G+ R +T+STSG +P I + E ++ + AISL
Sbjct: 172 MGIGEPFDNYDNLMAFLRIVNHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|228992592|ref|ZP_04152519.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
pseudomycoides DSM 12442]
gi|228998640|ref|ZP_04158227.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
Rock3-17]
gi|229006141|ref|ZP_04163828.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
Rock1-4]
gi|228755094|gb|EEM04452.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
Rock1-4]
gi|228761108|gb|EEM10067.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
Rock3-17]
gi|228767226|gb|EEM15862.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
pseudomycoides DSM 12442]
Length = 362
Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E++ L + G P + R QI+ W+Y + +++++ M+++S+ +R L
Sbjct: 15 KKTSIYSLQLHEMQNWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TDERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG+GEP N+DN+ L I + G+ R +T+STSG +P I + E ++ + AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|332534669|ref|ZP_08410500.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035881|gb|EGI72363.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
haloplanktis ANT/505]
Length = 376
Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats.
Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 21/383 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M KK +L+ + R+ + E G R+ Q+ KWIY G+ +F M+++++++
Sbjct: 1 MTEQKKINLLDLNRDAMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDEMTNVNKKL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
+ L I+ PEI + + DGT K+ L G E+E V+IPEK R TLCVSS
Sbjct: 57 KEKLKAECEIVAPEITVRQQASDGTIKYALILE-----GGQEVEAVWIPEKERATLCVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C+FC T Q RNL EI+ QV +G + S R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGHSEKRPVT 161
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNLKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
ISLHA N LR+ILVP+N+KYP+E + ACR Y S A + +T EYVML GINDS A
Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L++ LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI
Sbjct: 282 HALVQTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDID 341
Query: 360 AACGQLKSL-SKRIPKVPRQEMQ 381
AACGQL R ++ +++++
Sbjct: 342 AACGQLVGDVVDRTKRLAKKKIR 364
>gi|157692255|ref|YP_001486717.1| Fe-S-cluster redox protein [Bacillus pumilus SAFR-032]
gi|205829664|sp|A8FD40|RLMN_BACP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157681013|gb|ABV62157.1| possible Fe-S-cluster redox protein [Bacillus pumilus SAFR-032]
Length = 360
Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ E++E L + Q R +QI++W+Y + + F MS++S+E+R L
Sbjct: 15 PSIYSFELHEMKEWLKE----QDEKPFRAAQIFEWLYEKRVTSFDAMSNLSKELREKLKA 70
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F+I + V ++ S DGT K+L IETV + + ++CV++QVGC +
Sbjct: 71 QFAITTLKTVIKQTSQDGTIKFLFELH-----DGYTIETVLMRHEYGNSVCVTTQVGCRI 125
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L RNL A EI+ QVL + L + ++S++V+MG
Sbjct: 126 GCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TDERVSSVVIMG 171
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
+GEP NF+ + L I + GL+ R IT+STSG +P I + +E + + A+SLHA
Sbjct: 172 IGEPFDNFEEMLAFLKIINHDNGLNIGARHITVSTSGIIPKIYQFADEQMQINFAVSLHA 231
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ ++R+ L+PIN+ Y L L++A +Y + RR++FEY + G+ND A L +
Sbjct: 232 PNTEIRSRLMPINKAYKLPKLMEAIEYYIQKT-GRRVSFEYGLFGGVNDQVHHAEELADL 290
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGI +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACGQL
Sbjct: 291 LKGIKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKERGVNVTIRREQGHDIDAACGQL 350
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 351 RAKERQEE 358
>gi|295135350|ref|YP_003586026.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda
SM-A87]
gi|294983365|gb|ADF53830.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda
SM-A87]
Length = 348
Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 211/366 (57%), Gaps = 24/366 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK+ + + +++L+E ++ G R SQ+++W++ +G DF M++IS++ R +L
Sbjct: 4 KKKDIRALTKKQLQEFFVEHG----DKSFRGSQVYEWLWSKGAHDFDEMTNISKQTRAML 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++F I + + + S DGT K ++ + +E+V IP +R T CVSSQVGC
Sbjct: 60 AENFVINHIRVDQMQRSSDGTIKNAVKLH-----DNLTVESVLIPTPTRTTACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C FC T K +RNL +EI QV+ + R +SNIV
Sbjct: 115 SLDCQFCATARLKRMRNLNPDEIYDQVVAI-------------DNESRLYFDRPLSNIVF 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N++NV K++ + GL S +RIT+STSG I ++ ++ + LA+SL
Sbjct: 162 MGMGEPLMNYNNVMKAVEKITSDEGLGMSAKRITISTSGVPKMIKKLADDEAKIKLAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++++R ++P N +PLE L +A ++ + + RIT+EY++ K +ND+ +DA+ L+
Sbjct: 222 HAATDEVRTRIMPFNETFPLEDLREALEYWYSKTKS-RITYEYIVWKDVNDTRKDAMALV 280
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ K +P K+NLI +NP ++ + + + + ++++G + +R RG DI AACG
Sbjct: 281 RFCKFVPCKVNLIEYNPIDDGDFQQASSQATAMYQQLLEQNGITVTVRRSRGKDIDAACG 340
Query: 364 QLKSLS 369
QL + S
Sbjct: 341 QLANKS 346
>gi|54307955|ref|YP_128975.1| hypothetical protein PBPRA0760 [Photobacterium profundum SS9]
gi|81615490|sp|Q6LU52|RLMN_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|46912381|emb|CAG19173.1| Conserved hypothetical protein [Photobacterium profundum SS9]
Length = 373
Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats.
Identities = 146/381 (38%), Positives = 203/381 (53%), Gaps = 22/381 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+ L + R QI KWIY G DF M++I++++R L
Sbjct: 5 KTNLLDLDRKGLRTYFAE---ELNEKAFRADQIMKWIYQFGCDDFDQMTNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P + + S DGT KW +R ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 RVAEIRAPYVSQAQHSVDGTIKWAMRVGD------QDVETVYIPDGDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL EI+ QV A +G + + R I+N+VMM
Sbjct: 116 LACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------IEKDTGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ + +++ Y SN R+T EY++L +ND A L
Sbjct: 226 PTDELRSQIMPINDRFNIATFLESVSRYIEQSNANRGRVTVEYILLDHVNDDMEHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI AACG
Sbjct: 286 VLLKDTPAKINLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QL K Q Q G
Sbjct: 346 QLVGDVIDRTK-RTQVKQHDG 365
>gi|260063739|ref|YP_003196819.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata
HTCC2501]
gi|88783184|gb|EAR14357.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata
HTCC2501]
Length = 347
Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats.
Identities = 128/369 (34%), Positives = 198/369 (53%), Gaps = 24/369 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K+ + + RE+L + G+ R +Q+++W++ +G DF M+++S ++
Sbjct: 1 MKSEAKKDIRALSREQLRDFFESRGMEA----FRGNQVYEWLWKKGAHDFDAMTNLSLDL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L F+I + E+ + S DGT K +R + +E+V IP ++R T CVSS
Sbjct: 57 REQLAAEFTINHIEVDRMQRSADGTVKNAVRLH-----DGLVVESVLIPTENRTTACVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL C FC T K +RNL +EI QV++ GR +S
Sbjct: 112 QVGCSLDCKFCATARLKRMRNLNPDEIYDQVVVIDR-------------QSRLYFGRPLS 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
NIV MGMGEPL N+ N+ K++ + GL S RRIT+STSG I R+ EE L
Sbjct: 159 NIVFMGMGEPLMNYPNMMKAIDKITSEEGLGMSPRRITVSTSGVPKMIRRMAEEGPRFNL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ + R+ ++P N +PL+ L DA ++ + R+T+EYV+ +GIND P D
Sbjct: 219 AVSLHSAIDSTRSTIMPFNETFPLDDLRDAIVYWYEKT-GNRVTYEYVVWEGINDGPEDV 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + P K+NLI +NP + + + + + ++ +G + +R RG DI
Sbjct: 278 AALLAFCRAAPCKVNLIEYNPIGDDAFRQASEPALQAYINALEGAGITVTVRRSRGKDID 337
Query: 360 AACGQLKSL 368
AACGQL +
Sbjct: 338 AACGQLANK 346
>gi|171463401|ref|YP_001797514.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192939|gb|ACB43900.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 383
Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats.
Identities = 145/359 (40%), Positives = 205/359 (57%), Gaps = 9/359 (2%)
Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
R Q+ +WI+ RG+ D MSD+++ R L ++ ++ ++ + DGTRKW
Sbjct: 9 NEKPFRAKQLMQWIHQRGVSDINHMSDLAKSFRATLLDKTEVLSLPVIKDEHALDGTRKW 68
Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
LL G +E+V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT+ EI+
Sbjct: 69 LLDV-----GAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGHQGFARNLTSGEII 123
Query: 149 LQVLLARSLLGDFPGC----EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
Q+ A LL + P E GR ISN+VMMGMGEPL N+DNV +L +
Sbjct: 124 GQLWFAEHLLRNDPEAVCRIEKFLTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLM 183
Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
D S+RR+T+STSG VP I R+ ++ V LA+SLHA ++ LR+ LVP+N+KY L
Sbjct: 184 LDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRDQLVPLNQKYLLR 243
Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
L+DAC Y + +TFEY ML +NDS A L+++L+ I KINLIPFNP+P
Sbjct: 244 ELLDACERYLPFAPRDFLTFEYCMLDSVNDSDIQAKELVRLLRNIKCKINLIPFNPFPES 303
Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
S + + F+ + +G + +R RG DI AACGQL +V +++
Sbjct: 304 GLKRSPAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQLAGDVVDRTRVRERDVHSA 362
>gi|241890016|ref|ZP_04777314.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
gi|241863638|gb|EER68022.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
Length = 377
Score = 358 bits (918), Expect = 9e-97, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 202/370 (54%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K S+ + ++LEE ++ IG + R QI+ W+Y + I DF M ++ + ++ L
Sbjct: 19 DKMSIYSIRLDQLEEYIVSIG----EKKFRAKQIFDWLYKKRITDFSEMKNVPKSLQEKL 74
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + + ++ S DGT K+L + IE+V + K +LCV++QVGC
Sbjct: 75 AEEFEITTLKTIIKQESADGTMKFLFELQDK-----YTIESVLMKNKYGNSLCVTTQVGC 129
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L G +IS+IV+
Sbjct: 130 RIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQELD--------------KKGERISSIVI 175
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + + I + + R IT+STSG VP I E + A+SL
Sbjct: 176 MGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR+ ++P+NR Y ++ L++A ++Y +N RITFEY ++ +ND A L
Sbjct: 236 HAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTNR-RITFEYGLMGKVNDQKEHAEKLS 294
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+I+KG+ +NLIP N P Y+ + + DI F + +K++ + IR +G DI AACG
Sbjct: 295 EIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKVLKKNKVNVTIRRTQGDDIDAACG 354
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 355 QLRAKERKEE 364
>gi|163753003|ref|ZP_02160127.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1]
gi|161326735|gb|EDP98060.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1]
Length = 347
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 24/370 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K+ + + +E+L + + G R +Q+++W++ +G F M++IS+E
Sbjct: 1 MKQAVKKDIRALSKEQLRDFFVSEG----DKAFRGNQVYEWLWQKGAHSFDDMTNISKET 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R +L ++F I + + + S DGT K +R + +E+V IP +R T CVSS
Sbjct: 57 RKMLEENFVINHIRVDKMQRSNDGTIKNAVRLH-----DGLVVESVLIPTSTRTTACVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL C FC T K +RNL +EI QV+ GR +S
Sbjct: 112 QVGCSLDCKFCATARLKRMRNLNPDEIYDQVVAIDR-------------ESRLYHGRPLS 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N++NV K++ + GL S +RIT+STSG I ++ ++ L
Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIEKITSEEGLGMSPKRITVSTSGVPKMIKKMADDEVKFKL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +++R ++P N +PL+ L +A ++ + +IT+EYV+ GIND +D
Sbjct: 219 AVSLHSAIDEVRTEIMPFNEHFPLKDLKEALTYWYDKT-KNKITYEYVVWDGINDQQKDI 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+K K +P+K+NLI +NP ++ + K I + + ++++G + +R RG DI
Sbjct: 278 NALVKFCKDVPSKVNLIEYNPIDDGQFQQASNKAIDRYVDSLEQNGITVTVRRSRGKDID 337
Query: 360 AACGQLKSLS 369
AACGQL +
Sbjct: 338 AACGQLANKE 347
>gi|59711233|ref|YP_204009.1| hypothetical protein VF_0626 [Vibrio fischeri ES114]
gi|75354452|sp|Q5E775|RLMN_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
Length = 372
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 145/381 (38%), Positives = 208/381 (54%), Gaps = 23/381 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ R+ L + R Q+ KW+Y G DF M++I++++R L
Sbjct: 5 KINLLDFDRKGLRAFFSE---ELGEKAFRADQVMKWMYHFGCDDFDQMNNINKKLREKLK 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I P + + + S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+
Sbjct: 62 HKCEIRAPYVSEAQHSSDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQVGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L I D +G + SKRR+T+STSG V + ++ +I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
+++LR+ ++PIN ++ ++ + + R Y SN R+T EYV+L +ND A L
Sbjct: 226 PTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLA 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LK PAKINLIPFNP+PG Y I F + + Y+ IR RG DI AACG
Sbjct: 286 ELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QL I + R +++ G
Sbjct: 346 QLVGDV--IDRTKRTKVKQQG 364
>gi|323440993|gb|EGA98700.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus O11]
Length = 364
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL
Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 KDNFTVTSLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|30263867|ref|NP_846244.1| hypothetical protein BA_4002 [Bacillus anthracis str. Ames]
gi|42782956|ref|NP_980203.1| hypothetical protein BCE_3906 [Bacillus cereus ATCC 10987]
gi|47529293|ref|YP_020642.1| hypothetical protein GBAA_4002 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186714|ref|YP_029966.1| ribosomal RNA large subunit methyltransferase N [Bacillus anthracis
str. Sterne]
gi|52141624|ref|YP_085205.1| hypothetical protein BCZK3623 [Bacillus cereus E33L]
gi|65321191|ref|ZP_00394150.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bacillus anthracis
str. A2012]
gi|118479086|ref|YP_896237.1| ribosomal RNA large subunit methyltransferase N [Bacillus
thuringiensis str. Al Hakam]
gi|167636419|ref|ZP_02394718.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0442]
gi|167641154|ref|ZP_02399409.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0193]
gi|170688817|ref|ZP_02880020.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0465]
gi|170708820|ref|ZP_02899256.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0389]
gi|190565819|ref|ZP_03018738.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis
Tsiankovskii-I]
gi|196035941|ref|ZP_03103343.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W]
gi|196038756|ref|ZP_03106064.1| conserved hypothetical protein TIGR00048 [Bacillus cereus
NVH0597-99]
gi|196047439|ref|ZP_03114651.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108]
gi|206976736|ref|ZP_03237640.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97]
gi|217961284|ref|YP_002339852.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187]
gi|218904994|ref|YP_002452828.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820]
gi|222097309|ref|YP_002531366.1| ribosomal RNA large subunit methyltransferase n [Bacillus cereus
Q1]
gi|225865845|ref|YP_002751223.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102]
gi|228916501|ref|ZP_04080067.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928912|ref|ZP_04091944.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935178|ref|ZP_04098005.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947583|ref|ZP_04109873.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228987007|ref|ZP_04147133.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229092907|ref|ZP_04224041.1| Radical SAM family enzyme [Bacillus cereus Rock3-42]
gi|229123378|ref|ZP_04252582.1| Radical SAM family enzyme [Bacillus cereus 95/8201]
gi|229140510|ref|ZP_04269065.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26]
gi|229157440|ref|ZP_04285518.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342]
gi|229186104|ref|ZP_04313273.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1]
gi|229197975|ref|ZP_04324689.1| Radical SAM family enzyme [Bacillus cereus m1293]
gi|229603263|ref|YP_002868101.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0248]
gi|254683427|ref|ZP_05147287.1| hypothetical protein BantC_06200 [Bacillus anthracis str.
CNEVA-9066]
gi|254721396|ref|ZP_05183185.1| hypothetical protein BantA1_02905 [Bacillus anthracis str. A1055]
gi|254735903|ref|ZP_05193609.1| hypothetical protein BantWNA_12161 [Bacillus anthracis str. Western
North America USA6153]
gi|254739849|ref|ZP_05197542.1| hypothetical protein BantKB_02319 [Bacillus anthracis str. Kruger
B]
gi|254756704|ref|ZP_05208733.1| hypothetical protein BantA9_00135 [Bacillus anthracis str.
Australia 94]
gi|301055355|ref|YP_003793566.1| radical SAM enzyme [Bacillus anthracis CI]
gi|81409444|sp|Q732K6|RLMN_BACC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81686555|sp|Q636G2|RLMN_BACCZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81715534|sp|Q81WH4|RLMN_BACAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829662|sp|A0RHN7|RLMN_BACAH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807149|sp|C3P635|RLMN_BACAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807151|sp|B7JJV1|RLMN_BACC0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807153|sp|C1EP88|RLMN_BACC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807155|sp|B7HLJ7|RLMN_BACC7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807156|sp|B9IVF3|RLMN_BACCQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|30258511|gb|AAP27730.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
Ames]
gi|42738883|gb|AAS42811.1| conserved hypothetical protein TIGR00048 [Bacillus cereus ATCC
10987]
gi|47504441|gb|AAT33117.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
'Ames Ancestor']
gi|49180641|gb|AAT56017.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
Sterne]
gi|51975093|gb|AAU16643.1| conserved hypothetical protein; radical SAM family [Bacillus cereus
E33L]
gi|118418311|gb|ABK86730.1| 23S rRNA m(2)A-2503 methyltransferase [Bacillus thuringiensis str.
Al Hakam]
gi|167510934|gb|EDR86325.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0193]
gi|167528161|gb|EDR90948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0442]
gi|170126305|gb|EDS95196.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0389]
gi|170667172|gb|EDT17932.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0465]
gi|190562738|gb|EDV16704.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis
Tsiankovskii-I]
gi|195991590|gb|EDX55556.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W]
gi|196021747|gb|EDX60442.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108]
gi|196030479|gb|EDX69078.1| conserved hypothetical protein TIGR00048 [Bacillus cereus
NVH0597-99]
gi|206745046|gb|EDZ56449.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97]
gi|217063048|gb|ACJ77298.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187]
gi|218536040|gb|ACK88438.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820]
gi|221241367|gb|ACM14077.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|225788055|gb|ACO28272.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102]
gi|228585454|gb|EEK43558.1| Radical SAM family enzyme [Bacillus cereus m1293]
gi|228597280|gb|EEK54931.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1]
gi|228626167|gb|EEK82916.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342]
gi|228643071|gb|EEK99347.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26]
gi|228660154|gb|EEL15790.1| Radical SAM family enzyme [Bacillus cereus 95/8201]
gi|228690529|gb|EEL44312.1| Radical SAM family enzyme [Bacillus cereus Rock3-42]
gi|228772785|gb|EEM21225.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228812103|gb|EEM58434.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824543|gb|EEM70348.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830719|gb|EEM76324.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843080|gb|EEM88162.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229267671|gb|ACQ49308.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0248]
gi|300377524|gb|ADK06428.1| radical SAM enzyme [Bacillus cereus biovar anthracis str. CI]
gi|324327762|gb|ADY23022.1| ribosomal RNA large subunit methyltransferase N [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 362
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|165872311|ref|ZP_02216948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0488]
gi|227813228|ref|YP_002813237.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
CDC 684]
gi|254751039|ref|ZP_05203078.1| hypothetical protein BantV_01167 [Bacillus anthracis str. Vollum]
gi|254807150|sp|C3L763|RLMN_BACAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|164711987|gb|EDR17527.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
A0488]
gi|227006974|gb|ACP16717.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
CDC 684]
Length = 362
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLHTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|49481621|ref|YP_037925.1| ribosomal RNA large subunit methyltransferase N [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|81395090|sp|Q6HEV1|RLMN_BACHK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|49333177|gb|AAT63823.1| conserved hypothetical protein, radical SAM family [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 362
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKTSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|30021952|ref|NP_833583.1| radical SAM protein [Bacillus cereus ATCC 14579]
gi|206971090|ref|ZP_03232041.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134]
gi|228960080|ref|ZP_04121744.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229047551|ref|ZP_04193141.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
AH676]
gi|229111335|ref|ZP_04240888.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
Rock1-15]
gi|229129140|ref|ZP_04258113.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
BDRD-Cer4]
gi|229146435|ref|ZP_04274806.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
BDRD-ST24]
gi|81580507|sp|Q819U3|RLMN_BACCR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|29897508|gb|AAP10784.1| Radical SAM family enzyme [Bacillus cereus ATCC 14579]
gi|206733862|gb|EDZ51033.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134]
gi|228637068|gb|EEK93527.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
BDRD-ST24]
gi|228654377|gb|EEL10242.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
BDRD-Cer4]
gi|228672111|gb|EEL27402.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
Rock1-15]
gi|228723798|gb|EEL75153.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
AH676]
gi|228799596|gb|EEM46549.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 362
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLKTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|229031494|ref|ZP_04187494.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
AH1271]
gi|228729783|gb|EEL80763.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
AH1271]
Length = 362
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + ++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG+GEP N+DN+ L I + G+ R +T+STSG VP I + E ++ + AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNKT-GRRITFEYGLFGGENDQVEQAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|163941602|ref|YP_001646486.1| radical SAM protein [Bacillus weihenstephanensis KBAB4]
gi|229013048|ref|ZP_04170213.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048]
gi|229061467|ref|ZP_04198812.1| Radical SAM family enzyme [Bacillus cereus AH603]
gi|229168604|ref|ZP_04296327.1| Radical SAM family enzyme [Bacillus cereus AH621]
gi|205829666|sp|A9VTA2|RLMN_BACWK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|163863799|gb|ABY44858.1| radical SAM enzyme, Cfr family [Bacillus weihenstephanensis KBAB4]
gi|228615010|gb|EEK72112.1| Radical SAM family enzyme [Bacillus cereus AH621]
gi|228717890|gb|EEL69538.1| Radical SAM family enzyme [Bacillus cereus AH603]
gi|228748302|gb|EEL98162.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048]
Length = 362
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++++ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG+GEP N+DN+ L I + G+ R +T+STSG VP I + E ++ + AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|71278436|ref|YP_270905.1| ribosomal RNA large subunit methyltransferase N [Colwellia
psychrerythraea 34H]
gi|123774847|sp|Q47WB7|RLMN_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|71144176|gb|AAZ24649.1| radical SAM enzyme, Cfr family [Colwellia psychrerythraea 34H]
Length = 386
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 158/380 (41%), Positives = 211/380 (55%), Gaps = 21/380 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + + E L IG R QI KWIY G DF+ M++I++++R L
Sbjct: 7 KVNLLNFDHKSMREYLESIG----EKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQ 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ I P+I ++++S DGT K+ L+ G E+ETV+IPE R TLCVSSQVGC+
Sbjct: 63 RNCIISAPDISEKQVSEDGTIKYALKLE-----GGQEVETVWIPENDRATLCVSSQVGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T Q RNL+ EI+ QV + +G R I+NIVMM
Sbjct: 118 LECTFCATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGT----------RPITNIVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N N+ +L + +G SKRR+T+STSG VP + + +I LAIS+HA
Sbjct: 168 GMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIK 304
+N LR+ LVPIN+KYPLE I A Y S A + T EYVML +NDS A L
Sbjct: 228 PNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAH 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
LKG+P+KINLIPFNP+PG Y S I F + ++ G + R RG DI AACGQ
Sbjct: 288 ALKGLPSKINLIPFNPYPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQ 347
Query: 365 LKSLS-KRIPKVPRQEMQIT 383
L R + +
Sbjct: 348 LAGDVFDRTKRSVINAAKNA 367
>gi|315646180|ref|ZP_07899300.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
vortex V453]
gi|315278379|gb|EFU41695.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
vortex V453]
Length = 346
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 131/369 (35%), Positives = 203/369 (55%), Gaps = 25/369 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + EEL+ + G P R +QI+ W+YV+ + DF+ M+++S+E+R L
Sbjct: 2 KPFIYDYSLEELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFEEMTNLSKELRGKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q FS + + + S DGT K+L IETV + ++CV++QVGC
Sbjct: 58 QQFSFVTLSEITKLESKDGTVKFLFGLH-----DDHAIETVIMKHNYGNSICVTTQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNLT+ EI+ QV+ A+ +L G ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLTSGEIVAQVVQAQKILD--------------KTGERVSSIVIM 158
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N++ K L GL+ +R IT+STSG VPNI + EE + LAIS+H
Sbjct: 159 GSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEENTQINLAISIH 218
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ L+P+NR++P + +I++ RHY + RRITFEY ++ G+ND A L
Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIESLRHYQAKT-GRRITFEYALIGGVNDQVEHAEELAD 277
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++K + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ
Sbjct: 278 VIKDMNCFVNLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQ 337
Query: 365 LKSLSKRIP 373
L++ +
Sbjct: 338 LRAKHMELR 346
>gi|229134672|ref|ZP_04263481.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196]
gi|228648718|gb|EEL04744.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196]
Length = 362
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++++ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG+GEP N+DN+ L I + G+ R +T+STSG VP I + E ++ + AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + ++R+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|229098333|ref|ZP_04229280.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
Rock3-29]
gi|229104426|ref|ZP_04235095.1| Radical SAM family enzyme [Bacillus cereus Rock3-28]
gi|229117350|ref|ZP_04246728.1| Radical SAM family enzyme [Bacillus cereus Rock1-3]
gi|228666250|gb|EEL21714.1| Radical SAM family enzyme [Bacillus cereus Rock1-3]
gi|228679124|gb|EEL33332.1| Radical SAM family enzyme [Bacillus cereus Rock3-28]
gi|228685231|gb|EEL39162.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
Rock3-29]
Length = 362
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|331091583|ref|ZP_08340419.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330403610|gb|EGG83166.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 347
Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 201/374 (53%), Gaps = 29/374 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ + EEL++ L IG R+ QI+ W++ + F+ M+++S+ +R
Sbjct: 1 MEKKDIRSYTLEELKKELESIG----EKPFRSKQIYSWLHEKLADSFEEMTNLSKALREK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + + I +V+ ++S DGT K+L +E+V + K ++C+SSQV
Sbjct: 57 LEKDYEIYPVTMVERQVSKLDGTNKFLFALR-----DNHVVESVLMRYKHGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + L RNLT E+L Q+ + + G ++SNI
Sbjct: 112 GCRMGCRFCASTLDGLARNLTPSEMLGQIYQIQKI-----------------TGERVSNI 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
V+MG GEPL N++N + + + SD GL S+R IT+ST G VPN+ R+ EE + LA+
Sbjct: 155 VIMGTGEPLDNYENFVRFIKLISDENGLHVSQRNITVSTCGIVPNMKRLAEEKFQITLAL 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH + + R L+P+ KY L+ +++AC +Y + RRITFEY +++G+ND DA
Sbjct: 215 SLHGSTQEKRRELMPVANKYELKEVLEACDNYFDRT-GRRITFEYSLVQGVNDREEDAGE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
LI ILK +NLIP NP + +++ F +++SG + IR G DI A
Sbjct: 274 LISILKPRNCHLNLIPVNPIKERNFEKPTRQNAEKFKNKLEKSGINVTIRREMGSDIDGA 333
Query: 362 CGQLKSLSKRIPKV 375
CGQL+ K+
Sbjct: 334 CGQLRRRYSEKSKI 347
>gi|228940952|ref|ZP_04103511.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228973881|ref|ZP_04134457.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980471|ref|ZP_04140781.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407]
gi|228779291|gb|EEM27548.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407]
gi|228785906|gb|EEM33909.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818788|gb|EEM64854.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|326941633|gb|AEA17529.1| radical SAM protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 362
Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|229174530|ref|ZP_04302062.1| Radical SAM family enzyme [Bacillus cereus MM3]
gi|228609090|gb|EEK66380.1| Radical SAM family enzyme [Bacillus cereus MM3]
Length = 362
Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + ++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG+GEP N+DN+ L I + G+ R +T+STSG VP I + E ++ + AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEQAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|256819328|ref|YP_003140607.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271]
gi|256580911|gb|ACU92046.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271]
Length = 350
Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 132/373 (35%), Positives = 203/373 (54%), Gaps = 24/373 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K + + +EEL G R +Q+++W++ +G+ F+ M+ + + R
Sbjct: 1 MQQKRDIRALTKEELRAFFESNG----DKPFRGNQVYEWLWQKGVHTFEEMTSLPKATRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L++HFSI + ++ + S DGT K +R + +E+V IP +R T CVSSQV
Sbjct: 57 MLSEHFSINHIKVDVMQRSNDGTIKNAVRLH-----DGLLVESVLIPTDTRTTACVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCSL CSFC T K +RNL +EI QV + + GR +SNI
Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQVKVI-------------DEQSRAFFGRPLSNI 158
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEPL N++NV K++ + GL S +RITLSTSG I ++ ++ LA+
Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ + +R ++P N ++PLE L +A ++ + RIT+EYV+ KGIND +D
Sbjct: 219 SLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
LIK K P+K+NLI +NP + +D K + + ++ +G + +R RG DI AA
Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLEEAGITVTVRHSRGKDIDAA 337
Query: 362 CGQLKSLSKRIPK 374
CGQL + K
Sbjct: 338 CGQLANKKVNSEK 350
>gi|229162800|ref|ZP_04290757.1| Radical SAM family enzyme [Bacillus cereus R309803]
gi|228620682|gb|EEK77551.1| Radical SAM family enzyme [Bacillus cereus R309803]
Length = 362
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TSERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|296504359|ref|YP_003666059.1| radical SAM protein [Bacillus thuringiensis BMB171]
gi|296325411|gb|ADH08339.1| radical SAM protein [Bacillus thuringiensis BMB171]
Length = 362
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAVQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLKTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|303246742|ref|ZP_07333019.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
gi|302491759|gb|EFL51639.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
Length = 350
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 137/364 (37%), Positives = 202/364 (55%), Gaps = 22/364 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+LI + ELE ++ +G P R Q+W+W++ +G RD M+D+S+ +R L +
Sbjct: 2 TNLIDLTFHELEALIVSLGEP----PYRARQVWQWLWQKGCRDIGRMTDVSKALRSRLGE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+I +P+++ S DGT K+LL +E V IPEK T C+S+QVGC++
Sbjct: 58 VATIAWPDVLRVSESADGTVKFLLGLS-----DGEAVECVLIPEKDHYTACLSTQVGCAM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RN+T E+L QVL+AR L D + N+V MG
Sbjct: 113 GCGFCATGMLGFRRNMTPGEMLGQVLVARQYLLDKGEALA------------LRNLVFMG 160
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+DN+ K+L GL FS RRIT+ST+G N+ +G LA+SLHA
Sbjct: 161 MGEPLLNYDNLVKTLEALHHPQGLDFSGRRITVSTAGVRRNLLELGRTGLCSLAVSLHAP 220
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ + R ++P K PL L+ R YP L R+TFEY++L G+ND+ DA L+++L
Sbjct: 221 TQEKRARIMPGAAKLPLSELMGILREYP-LKPRERLTFEYLLLDGVNDADADARELVRLL 279
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ AK+NLI +N PG + + F E +K G ++ IR +G DI AACGQL+
Sbjct: 280 STVKAKVNLIVYNATPGLPFRQPAAGRVAAFQEILKAKGITATIRKSKGADIAAACGQLR 339
Query: 367 SLSK 370
+ ++
Sbjct: 340 AEAE 343
>gi|228922618|ref|ZP_04085918.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228954141|ref|ZP_04116169.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|229071362|ref|ZP_04204585.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
F65185]
gi|229081119|ref|ZP_04213629.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
Rock4-2]
gi|229180140|ref|ZP_04307484.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
172560W]
gi|229192033|ref|ZP_04319003.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
ATCC 10876]
gi|228591584|gb|EEK49433.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
ATCC 10876]
gi|228603349|gb|EEK60826.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
172560W]
gi|228702163|gb|EEL54639.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
Rock4-2]
gi|228711816|gb|EEL63768.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
F65185]
gi|228805461|gb|EEM52052.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228837047|gb|EEM82388.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 362
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|315224773|ref|ZP_07866595.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287]
gi|314945266|gb|EFS97293.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287]
Length = 350
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 131/373 (35%), Positives = 203/373 (54%), Gaps = 24/373 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K + + ++EL G R +Q+++W++ +G+ F+ M+ + + R
Sbjct: 1 MQQKRDIRALTKDELRAFFESNG----DKPFRGNQVYEWLWQKGVHTFEEMTSLPKATRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L++HFSI + ++ + S DGT K +R + +E+V IP +R T CVSSQV
Sbjct: 57 MLSEHFSINHIKVDVMQRSNDGTIKNAVRLH-----DGLLVESVLIPTDTRTTACVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCSL CSFC T K +RNL +EI QV + + GR +SNI
Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQVKVI-------------DEQSRAFFGRPLSNI 158
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEPL N++NV K++ + GL S +RITLSTSG I ++ ++ LA+
Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ + +R ++P N ++PLE L +A ++ + RIT+EYV+ KGIND +D
Sbjct: 219 SLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
LIK K P+K+NLI +NP + +D K + + ++ +G + +R RG DI AA
Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLEEAGITVTVRHSRGKDIDAA 337
Query: 362 CGQLKSLSKRIPK 374
CGQL + K
Sbjct: 338 CGQLANKKVNSEK 350
>gi|229019062|ref|ZP_04175900.1| Radical SAM family enzyme [Bacillus cereus AH1273]
gi|229025306|ref|ZP_04181725.1| Radical SAM family enzyme [Bacillus cereus AH1272]
gi|228735997|gb|EEL86573.1| Radical SAM family enzyme [Bacillus cereus AH1272]
gi|228742230|gb|EEL92392.1| Radical SAM family enzyme [Bacillus cereus AH1273]
Length = 362
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG+GEP N+DN+ L I + G+ R +T+STSG VP I + E ++ + AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEQAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|47569490|ref|ZP_00240170.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241]
gi|47553819|gb|EAL12190.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241]
Length = 362
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|210617186|ref|ZP_03291453.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787]
gi|210149461|gb|EEA80470.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787]
Length = 345
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 122/372 (32%), Positives = 199/372 (53%), Gaps = 29/372 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ + EEL++ + +G R Q+++W++V+ F+ M+++S+ +R
Sbjct: 1 MEKKDIRSYTFEELKQEMEHLG----EKSFRAKQVYEWLHVKLADSFEEMTNLSKALREK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L+ + I ++++ + S DGT K+L +E+V + K ++C+SSQV
Sbjct: 57 LDAAYEIAPVKMLERQESKLDGTNKFLFCLQ-----DGHVVESVLMKYKHGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + L RNL A E+L Q+ + + G ++SN+
Sbjct: 112 GCRMGCKFCASTIGGLERNLKASEMLGQIYQIQKI-----------------SGERVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEP+ N+DN K + I +D GL S+R IT+ST G VPN+ R+ EE + LA+
Sbjct: 155 VVMGTGEPMDNYDNFLKFIHILTDEHGLHISQRNITVSTCGIVPNMKRLAEEKLQITLAL 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH + + R +L+P+ KY L ++ AC +Y + RR+TFEY ++ G+ND DA
Sbjct: 215 SLHGSTQEKRKVLMPVANKYELSEVLAACDYYFEKT-GRRVTFEYSLVHGVNDKEEDAAE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
LI ILK +NLIP NP + +K+ + F +++SG + IR G DI A
Sbjct: 274 LIHILKHRNCHLNLIPVNPIKERTFEKPSKKNAMNFKNKLEKSGINVTIRREMGSDIDGA 333
Query: 362 CGQLKSLSKRIP 373
CGQL+
Sbjct: 334 CGQLRRRYVETK 345
>gi|29654554|ref|NP_820246.1| radical SAM protein [Coxiella burnetii RSA 493]
gi|154706747|ref|YP_001424689.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
gi|161830060|ref|YP_001597102.1| radical SAM protein [Coxiella burnetii RSA 331]
gi|81628860|sp|Q83C77|RLMN_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829741|sp|A9KFV0|RLMN_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829742|sp|A9NDW2|RLMN_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|29541821|gb|AAO90760.1| radical SAM family enzyme [Coxiella burnetii RSA 493]
gi|154356033|gb|ABS77495.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
gi|161761927|gb|ABX77569.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 331]
Length = 370
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R
Sbjct: 1 MTEKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L++ + PE+ E++S DGT KWL R +IETV+IP++ RGTLCVSSQV
Sbjct: 57 QLSEASFVRVPELALERVSADGTHKWLFRL-----ADNNKIETVFIPDRKRGTLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L CSFC TG + RNLT EI+ QV LA LL KI+N+
Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLK---------------SPYKITNV 156
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+S
Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA L
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
I++L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI AC
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ +Q G
Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358
>gi|46581308|ref|YP_012116.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris str. Hildenborough]
gi|81404173|sp|Q727F1|RLMN_DESVH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|46450729|gb|AAS97376.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234971|gb|ADP87825.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
Length = 364
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 135/367 (36%), Positives = 199/367 (54%), Gaps = 17/367 (4%)
Query: 7 ESLIGMMREELEEAL-LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++ + EELE + ++G P R R Q+W+W++ + R F M+++S+ R L
Sbjct: 2 TDILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLA 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I +PE+ + S DGT K+LLR + V I + R T C+S QVGC+
Sbjct: 58 EKAVITWPEVETVQKSADGTTKFLLRLADGALVETVLIPSASREGTLRITQCLSCQVGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TGT RN+T EIL QVL+AR+ LGD I + N+V M
Sbjct: 118 MGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LRNLVFM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N + V +SL +D GLSFS RRIT+ST G + +GE LA+SLHA
Sbjct: 167 GMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHA 226
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ ++R ++P + L+ LI A YP L R+TFEY++L G+ND A L+++
Sbjct: 227 PNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHARELVRL 285
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ K+NLI +NP G Y + I+ F + + ++ IR +G DI AACGQL
Sbjct: 286 VSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKAACGQL 345
Query: 366 KSLSKRI 372
K+ +
Sbjct: 346 KASELQR 352
>gi|120601511|ref|YP_965911.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris DP4]
gi|205829747|sp|A1VAL8|RLMN_DESVV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|120561740|gb|ABM27484.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio vulgaris DP4]
Length = 364
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 135/367 (36%), Positives = 199/367 (54%), Gaps = 17/367 (4%)
Query: 7 ESLIGMMREELEEAL-LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++ + EELE + ++G P R R Q+W+W++ + R F M+++S+ R L
Sbjct: 2 TDILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLA 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I +PE+ + S DGT K+LLR + V I + R T C+S QVGC+
Sbjct: 58 EKAVITWPEVETVQKSADGTTKFLLRLADGALVETVLIPSASREGTLRITQCLSCQVGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TGT RN+T EIL QVL+AR+ LGD I + N+V M
Sbjct: 118 MGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LRNLVFM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N + V +SL +D GLSFS RRIT+ST G + +GE LA+SLHA
Sbjct: 167 GMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHA 226
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ ++R ++P + L+ LI A YP L R+TFEY++L G+ND A L+++
Sbjct: 227 PNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHARELVRL 285
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ K+NLI +NP G Y + I+ F + + ++ IR +G DI AACGQL
Sbjct: 286 VSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKAACGQL 345
Query: 366 KSLSKRI 372
K+ +
Sbjct: 346 KASELQR 352
>gi|71898147|ref|ZP_00680333.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
gi|71732121|gb|EAO34177.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
Length = 401
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 160/383 (41%), Positives = 221/383 (57%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L
Sbjct: 22 KQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRLQ 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC
Sbjct: 79 ACAEVRVPRVVFDKHSVDGTHKWLLAM---GADRKNAIETVYIPDKGRGTLCVSSQIGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+ +C Y ++ R +TFEY ++KG+ND A L K
Sbjct: 245 PNDKLREQLVPLNKKYPIVELMASCERYLSVNPKRDSVTFEYTLMKGVNDKQEHAHELAK 304
Query: 305 ILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG
Sbjct: 305 LMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--VDRTRRQA 385
>gi|323487018|ref|ZP_08092330.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
WAL-14163]
gi|323692060|ref|ZP_08106307.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
gi|323399666|gb|EGA92052.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
WAL-14163]
gi|323503860|gb|EGB19675.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
Length = 350
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 120/375 (32%), Positives = 206/375 (54%), Gaps = 29/375 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K + + EEL++ L +G R Q+++W++ + F M+++S+++R
Sbjct: 1 MNKTDIKSLTHEELQDLLKGMG----EKPFRAGQLYRWMHEKLAASFDEMTNLSKDLRGK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L ++ + + V +IS D TRK+L IE+V + K ++C+SSQV
Sbjct: 57 LAENCTFTALKPVCVRISQIDDTRKYLFELE-----DGNVIESVLMKYKHGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + L RNLT E+L Q+ + G ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLERNLTPSEMLDQIYRIQR-----------------DTGERVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N+DN+ + + + + GL+ S+R +T+ST G VP I ++ EE + LA+
Sbjct: 155 VVMGSGEPLDNYDNLIRFIRLLTGEGGLNISQRNVTVSTCGIVPGIRKLAEEDLQITLAL 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++++R L+P+ ++Y L ++DACR+Y + RR+TFEY +++G+ND+ +A
Sbjct: 215 SLHAPNDEVRRTLMPVAKRYGLNEVMDACRYYFEKT-GRRLTFEYSLVQGVNDNLDEAKA 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L++++K +NLIP NP EY+ S ++ I F +++SG + +R G DI A
Sbjct: 274 LVRLIKDQHGHVNLIPVNPIKEREYVQSGRQAIEAFKNQLEKSGINVTVRREMGRDIDGA 333
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+ +
Sbjct: 334 CGQLRKSFIDKERKE 348
>gi|228909689|ref|ZP_04073512.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200]
gi|228849978|gb|EEM94809.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200]
Length = 362
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|28199501|ref|NP_779815.1| hypothetical protein PD1624 [Xylella fastidiosa Temecula1]
gi|81585666|sp|Q87B36|RLMN_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829942|sp|B2I7V5|RLMN_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|28057616|gb|AAO29464.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|307578508|gb|ADN62477.1| hypothetical protein XFLM_02390 [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 406
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 159/383 (41%), Positives = 219/383 (57%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L
Sbjct: 27 KQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRLQ 83
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC
Sbjct: 84 ACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGCG 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 141 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 189
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 190 GMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 249
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+ +C Y + +TFEY ++KG+ND A L K
Sbjct: 250 PNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAK 309
Query: 305 ILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG
Sbjct: 310 LMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGD 369
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 370 DIDAACGQLKGQV--VDRTRRQA 390
>gi|55823590|ref|YP_142031.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus CNRZ1066]
gi|116628382|ref|YP_821001.1| hypothetical protein STER_1660 [Streptococcus thermophilus LMD-9]
gi|81558991|sp|Q5LY98|RLMN_STRT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|122267023|sp|Q03J17|RLMN_STRTD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|55739575|gb|AAV63216.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
gi|116101659|gb|ABJ66805.1| Predicted Fe-S-cluster redox enzyme [Streptococcus thermophilus
LMD-9]
Length = 389
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 134/375 (35%), Positives = 215/375 (57%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN
Sbjct: 25 KPSIYGLTRDELIDWAVEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 81 DNFCVNPLKQRIVQESKDGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 363 CGQLRSNTMKRDRQK 377
>gi|218899017|ref|YP_002447428.1| hypothetical protein BCG9842_B1280 [Bacillus cereus G9842]
gi|228902368|ref|ZP_04066524.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222]
gi|228966814|ref|ZP_04127858.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto
str. T04001]
gi|254807152|sp|B7IUM3|RLMN_BACC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|218543794|gb|ACK96188.1| conserved hypothetical protein TIGR00048 [Bacillus cereus G9842]
gi|228792913|gb|EEM40471.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228857266|gb|EEN01770.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222]
Length = 362
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350
Query: 364 QLKSLSKRIP 373
QL++ ++
Sbjct: 351 QLRAKERKEE 360
>gi|291563554|emb|CBL42370.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
SS3/4]
Length = 348
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 195/365 (53%), Gaps = 29/365 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ L M EEL E + ++G R Q+++W++V+ +++ + ++
Sbjct: 1 MEKKDLKSMTLEELTEFVKELG----EKPFRAKQLYQWMHVKLAESLDECTNLPKSLKEK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L+++ + + V S DGTRK+L IE+V + ++C+SSQV
Sbjct: 57 LSEYSTYTSLKTVKMLESGIDGTRKYLFGL-----DDGNVIESVLMKYHHGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + L RNL E+L Q+ + S G ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLTRNLRPSEMLDQIYRIQR-----------------STGERVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEP+ N+DN+ + + + SD GL+ S+R IT+ST G VP I ++ EE + LA+
Sbjct: 155 VVMGSGEPMDNYDNLIRFIRLLSDENGLNISQRNITVSTCGIVPKILKLAEEGLSITLAL 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++ R L+PI Y L ++ AC+ Y + RR+TFEY +++G+ND+ +A
Sbjct: 215 SLHAPDDETRKTLMPIANSYSLSEVLPACKEYYKKT-GRRLTFEYSLVQGVNDNLDEAKR 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +LK + +NLIP NP ++ S++ I F +++ G + IR G DI A
Sbjct: 274 LTALLKDMQGHVNLIPVNPIKERDFKQSNRDAIDAFRGYLEKHGINVTIRREMGRDIGGA 333
Query: 362 CGQLK 366
CGQL+
Sbjct: 334 CGQLR 338
>gi|158320465|ref|YP_001512972.1| radical SAM protein [Alkaliphilus oremlandii OhILAs]
gi|205829712|sp|A8MH89|RLMN_ALKOO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|158140664|gb|ABW18976.1| radical SAM enzyme, Cfr family [Alkaliphilus oremlandii OhILAs]
Length = 343
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 134/370 (36%), Positives = 203/370 (54%), Gaps = 30/370 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K L+ + +E+EE L +G + R QI++W+ +G++ F M+++S+ +R
Sbjct: 1 MEKIDLLSLTLKEIEEILTNMG----EKKFRGKQIFQWV-NKGVKTFDEMTNLSKNLRDQ 55
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + I +I + IS DGT K+L IE V + T C+S+QV
Sbjct: 56 LAERTYITNIKIEKKLISSIDGTIKYLFLLEDCN-----IIEGVVMKYHHGLTACISTQV 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C+FC + LVRNL A E++ Q+L + G +ISNI
Sbjct: 111 GCAMGCTFCASTLDGLVRNLRAGEMIDQILTMQE-----------------DTGERISNI 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V+MG GEPL N+D L I +D GL+ R ITLSTSG VP I + + +I + LAI
Sbjct: 154 VLMGSGEPLHNYDETINFLKIINDENGLNIGNRHITLSTSGLVPQIKTLADLKIPINLAI 213
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +++LR +P+ +KY ++ LID+CR+Y + RRITFEY ++KG+ND +DA
Sbjct: 214 SLHAPNDELRQQTMPVAKKYAIDELIDSCRYYIEKT-GRRITFEYALIKGVNDRDKDARE 272
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +LKG+ +NLIP N Y + I F +K++G + +R G DI AA
Sbjct: 273 LGDLLKGMLCHVNLIPVNNVDERGYKKPSIESIHQFQNTLKKAGIETTVRREMGADINAA 332
Query: 362 CGQLKSLSKR 371
CGQL+ +
Sbjct: 333 CGQLRRKHLQ 342
>gi|22536637|ref|NP_687488.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae 2603V/R]
gi|76797765|ref|ZP_00780032.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
gi|77405571|ref|ZP_00782661.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
gi|81588624|sp|Q8E1A3|RLMN_STRA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|22533475|gb|AAM99360.1|AE014212_19 conserved hypothetical protein TIGR00048 [Streptococcus agalactiae
2603V/R]
gi|76586913|gb|EAO63404.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
gi|77175793|gb|EAO78572.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
Length = 368
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN
Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L
Sbjct: 230 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+S + + + + Q
Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368
>gi|76787054|ref|YP_329191.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae A909]
gi|123730855|sp|Q3K2R2|RLMN_STRA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|76562111|gb|ABA44695.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae A909]
Length = 368
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN
Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L
Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+S + + + + Q
Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368
>gi|77411450|ref|ZP_00787796.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
gi|77162536|gb|EAO73501.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
Length = 368
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN
Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L
Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+S + + + + Q
Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368
>gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
gi|212672379|gb|EEB32862.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
Length = 357
Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats.
Identities = 136/365 (37%), Positives = 201/365 (55%), Gaps = 17/365 (4%)
Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L+ EL + + ++G P + R Q+W+WI+ + RDF M+++S+ R L
Sbjct: 2 INLLDYTLPELTDWMQNELGEP----KFRAVQVWQWIWQKMARDFDAMTNVSKACRERLA 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q I +PEIV + S D T K+LLR V I + R T C+SSQVGC+
Sbjct: 58 QCAEIRWPEIVTVEQSSDDTTKFLLRLQDGAEVETVLIPSDSREGVRRWTQCLSSQVGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TGT RN+T EIL Q+L+AR LGD + + N+V M
Sbjct: 118 MACTFCSTGTMGFERNMTMGEILGQILVAREHLGDTRPDWPV-----------LRNLVFM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N NV ++L ++ GL+FS RRIT+ST G + +GE LA+SLHA
Sbjct: 167 GMGEPLLNLKNVMRALESLNNDKGLNFSPRRITVSTCGIEKGLRELGESGLAYLAVSLHA 226
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR ++P ++PLE L+ A + YP L RITFEY++L G+ND A L ++
Sbjct: 227 PTQELRARIMPKAARWPLEDLLQALKSYP-LKTRERITFEYLLLGGVNDGLEQARQLARV 285
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ + K+NLI +NP G Y + ++ F + + ++ IR +G DI AACGQL
Sbjct: 286 VSDVKGKLNLIVYNPSEGDPYKAPSPERVLAFEQYLWDRNITAIIRKSKGQDIKAACGQL 345
Query: 366 KSLSK 370
K+ +
Sbjct: 346 KAARQ 350
>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
Length = 357
Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats.
Identities = 170/368 (46%), Positives = 218/368 (59%), Gaps = 26/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G+ R L L + G P R SQI +W++ R + DF MS+IS+ +R L
Sbjct: 2 PHLLGLDRAGLVALLQEWGEP----PFRASQILQWLHQRQVDDFAAMSNISKALRARLMA 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
PE++ ++++ D TRKWLLR P IETV+IPE+ RGTLC+SSQVGCSL
Sbjct: 58 ETRWDEPEVIADQLARDETRKWLLRLP-----DGNAIETVFIPEEDRGTLCISSQVGCSL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG Q L RNL++ EI+ QV +AR LG I+N+V MG
Sbjct: 113 ACSFCATGAQGLNRNLSSHEIVAQVRVARRHLGLDA----------------ITNVVFMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N V + + D S RR+T+ST+G +P + ++G E V LAISLHA
Sbjct: 157 MGEPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETPVNLAISLHAS 216
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
NDLR+ LVPINR YPL L+ ACR YP L RRITFEYVML G+NDS DA L+++L
Sbjct: 217 RNDLRDELVPINRHYPLAQLMAACRSYP-LPPRRRITFEYVMLDGVNDSDADARALVRLL 275
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+G+PA +NLIPFNP+PG Y S I F E + +G + R PRG DI AACGQL
Sbjct: 276 RGLPALVNLIPFNPFPGSPYRRSSLARIDAFREIVLSAGIMTVTRRPRGDDIAAACGQLA 335
Query: 367 SLSKRIPK 374
+
Sbjct: 336 GQVHAGRR 343
>gi|212212364|ref|YP_002303300.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
gi|254807167|sp|B6IZM7|RLMN_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|212010774|gb|ACJ18155.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
Length = 370
Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats.
Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R
Sbjct: 1 MTEKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L++ + PE+ E++S DGT KWL R +IETV+IP++ RGTLCVSSQV
Sbjct: 57 QLSEASFVRVPELALERVSADGTHKWLFRL-----ADNNKIETVFIPDRKRGTLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L CSFC TG + RNLT EI+ QV LA LL KI+N+
Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLK---------------SPYKITNV 156
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+S
Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA L
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
I++L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI AC
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ +Q G
Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358
>gi|331086042|ref|ZP_08335125.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330406965|gb|EGG86470.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 358
Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats.
Identities = 120/374 (32%), Positives = 197/374 (52%), Gaps = 29/374 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+ + EEL+E + IG R Q+++W++V+ +R F M+++S+ +R L
Sbjct: 4 EKKDIGSFRFEELKEEMTSIG----EKAFRAKQVYEWLHVKLVRSFDEMTNLSKPLREKL 59
Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + I E++D ++S DGT K+L R +E+V + K ++C+SSQVG
Sbjct: 60 ARQYEIREVEMLDRQVSAMDGTNKFLFRLS-----DGHVVESVLMKYKHGNSVCISSQVG 114
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC + L RNLT E+L Q+ + + G +++N+V
Sbjct: 115 CRMGCRFCASTIGGLERNLTPSEMLGQIYQIQRI-----------------SGERVANVV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG GEPL N++N+ K + + +D GL S+R +T+ST G VP + + EE + LA+S
Sbjct: 158 VMGTGEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH + + R L+P+ KY L +++AC Y + RR+TFEY ++ G+ND+ DA L
Sbjct: 218 LHGSTQEKRKKLMPVANKYELSEVLEACDIYFAKT-GRRMTFEYSLVHGVNDTEEDAKEL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L INLIP NP ++ ++ F +++SG + IR G DI AC
Sbjct: 277 SALLSHRNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGAC 336
Query: 363 GQLKSLSKRIPKVP 376
GQL+
Sbjct: 337 GQLRKRYVETNGSK 350
>gi|182682234|ref|YP_001830394.1| radical SAM protein [Xylella fastidiosa M23]
gi|182632344|gb|ACB93120.1| radical SAM enzyme, Cfr family [Xylella fastidiosa M23]
Length = 401
Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats.
Identities = 159/383 (41%), Positives = 219/383 (57%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L
Sbjct: 22 KQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRLQ 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC
Sbjct: 79 ACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGCG 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 244
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+ +C Y + +TFEY ++KG+ND A L K
Sbjct: 245 PNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAK 304
Query: 305 ILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG
Sbjct: 305 LMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGD 364
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 365 DIDAACGQLKGQV--VDRTRRQA 385
>gi|291549489|emb|CBL25751.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus torques L2-14]
Length = 346
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 201/370 (54%), Gaps = 29/370 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + EEL++ + IG R QI++W++V+ + F M+++S+ +R L
Sbjct: 2 KKDIRAYGYEELQKEMATIG----EKAFRAKQIYEWLHVKLVDHFDEMTNLSKALREKLE 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+++ I+ +++ +IS DGT K+L R +E+V + K ++C+SSQVGC
Sbjct: 58 ENYEILPVVMLERQISQIDGTNKFLFRLY-----DGNVVESVLMKYKHGNSVCISSQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + LVRNL+ E+L Q+ + + G ++SN+V+
Sbjct: 113 RMGCAFCASTIGGLVRNLSPSEMLGQIYQIQKI-----------------SGERVSNVVI 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEP+ N+DN K + + +D GL+ S+R +T+ST G VP + + +E + LA+SL
Sbjct: 156 MGTGEPMDNYDNFLKFIHLLTDEHGLNISQRNVTVSTCGIVPKMKELAKEHLQITLALSL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H + + R L+P+ KY + ++ AC Y + RR++FEY ++ G+ND+ DA LI
Sbjct: 216 HGSNQEKRRKLMPVANKYDITEVLAACDEYFKET-GRRVSFEYSLVHGVNDTDEDAQELI 274
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+ INLIP NP +++ +K + F +++SG + IR G DI ACG
Sbjct: 275 HLLRHKNCHINLIPVNPVKERDFVRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACG 334
Query: 364 QLKSLSKRIP 373
QL+
Sbjct: 335 QLRRRYVETE 344
>gi|153208845|ref|ZP_01947069.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
gi|165921447|ref|ZP_02219635.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334]
gi|212218666|ref|YP_002305453.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
gi|254807166|sp|B6J7Q9|RLMN_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|120575696|gb|EAX32320.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
gi|165916762|gb|EDR35366.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334]
gi|212012928|gb|ACJ20308.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
Length = 370
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R
Sbjct: 1 MTEKINLLNLSETELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L++ + PE+ E++S DGT KWL R +IETV+IP++ RGTLCVSSQV
Sbjct: 57 QLSEASFVRVPELALERVSADGTHKWLFRL-----ADNNKIETVFIPDRKRGTLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L CSFC TG + RNLT EI+ QV LA LL KI+N+
Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLK---------------SPYKITNV 156
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+S
Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA L
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
I++L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI AC
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336
Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
GQL ++ +Q G
Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358
>gi|71274608|ref|ZP_00650896.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon]
gi|170730870|ref|YP_001776303.1| hypothetical protein Xfasm12_1780 [Xylella fastidiosa M12]
gi|205829927|sp|B0U494|RLMN_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|71164340|gb|EAO14054.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon]
gi|167965663|gb|ACA12673.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 406
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 159/383 (41%), Positives = 219/383 (57%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L
Sbjct: 27 KQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRLQ 83
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC
Sbjct: 84 ACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGCG 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 141 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVPHQR-----------RRLTNVVMM 189
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 190 GMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 249
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+ +C Y + +TFEY ++KG+ND A L K
Sbjct: 250 PNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAK 309
Query: 305 ILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG
Sbjct: 310 LMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGD 369
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 370 DIDAACGQLKGQV--VDRTRRQA 390
>gi|228477270|ref|ZP_04061908.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126]
gi|228251289|gb|EEK10460.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126]
Length = 389
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 134/375 (35%), Positives = 216/375 (57%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN
Sbjct: 25 KPSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 81 ENFCVNPLKQRIVQESKDGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 363 CGQLRSNTMKRDRQK 377
>gi|325662241|ref|ZP_08150856.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471493|gb|EGC74714.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 358
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 120/374 (32%), Positives = 197/374 (52%), Gaps = 29/374 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+ + EEL+E + IG R Q+++W++V+ +R F M+++S+ +R L
Sbjct: 4 EKKDIGSFRFEELKEEMTSIG----EKAFRAKQVYEWLHVKLVRSFDEMTNLSKPLREKL 59
Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + I E++D ++S DGT K+L R +E+V + K ++C+SSQVG
Sbjct: 60 ARQYEIREVEMLDRQVSAMDGTNKFLFRLS-----DGHVVESVLMKYKHGNSVCISSQVG 114
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC + L RNLT E+L Q+ + + G +++N+V
Sbjct: 115 CRMGCRFCASTIGGLERNLTPSEMLGQIYQIQRI-----------------SGERVANVV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG GEPL N++N+ K + + +D GL S+R +T+ST G VP + + EE + LA+S
Sbjct: 158 VMGTGEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH + + R L+P+ KY L +++AC Y + RR+TFEY ++ G+ND+ DA L
Sbjct: 218 LHGSTQEKRKKLMPVANKYELSEVLEACDIYFAKT-GRRMTFEYSLVHGVNDTEEDAKEL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L INLIP NP ++ ++ F +++SG + IR G DI AC
Sbjct: 277 SALLSHKNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGAC 336
Query: 363 GQLKSLSKRIPKVP 376
GQL+
Sbjct: 337 GQLRKRYVETNGSK 350
>gi|218290479|ref|ZP_03494599.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
LAA1]
gi|218239500|gb|EED06695.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
LAA1]
Length = 348
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 126/366 (34%), Positives = 210/366 (57%), Gaps = 27/366 (7%)
Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
L EEL + ++ ++G R Q+++W+Y + + F M+++ + +R LN
Sbjct: 2 VHLYDFTMEELRDWVVRELG----ERPFRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLN 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + E V + S D T K+LL +P V +E+V + + ++CVSSQVGC
Sbjct: 58 EIAYLRSAEQVVRQDSKVDPTTKFLLAWP-----DGVTVESVLMRHRYGNSVCVSSQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + ++RN+TA E++ QVL +++LL + G+++S++V+
Sbjct: 113 KMGCTFCASTLGGMIRNMTAGEMVEQVLHSQALLDEI--------------GQRVSSVVV 158
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG GEP+ N+D V + + I ++ GL+ +R IT+ST G VP I R+ EE + LA+SL
Sbjct: 159 MGSGEPMDNYDQVMRFIDIITNEHGLNIGQRHITVSTVGLVPGIRRLAEEGRNITLAVSL 218
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ +R ++P+N+ YP+ L++AC Y + RRI+FEY ++ G NDS A L
Sbjct: 219 HAPNDAIRGRMMPVNKAYPIAKLMEACHDYYRKT-GRRISFEYALVAGENDSLECAKELA 277
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++KG+P +NLIP N P Y +D+K I F + +G ++ IR G DI AACG
Sbjct: 278 ELVKGLPCHVNLIPVNYVPERGYRRTDRKQIFAFWRALLDAGVNATIRREMGHDIAAACG 337
Query: 364 QLKSLS 369
QL++
Sbjct: 338 QLRAQY 343
>gi|77408383|ref|ZP_00785123.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
gi|77172986|gb|EAO76115.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
Length = 368
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 132/377 (35%), Positives = 211/377 (55%), Gaps = 26/377 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN
Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQYYGLSVCVTTQVGCN 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L
Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348
Query: 362 CGQLKSLSKRIPKVPRQ 378
CGQL+S + + + +
Sbjct: 349 CGQLRSNTMKRDRQKAK 365
>gi|118444223|ref|YP_878314.1| ribosomal RNA large subunit methyltransferase N [Clostridium novyi
NT]
gi|205829738|sp|A0Q112|RLMN_CLONN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|118134679|gb|ABK61723.1| radical SAM enzyme, Cfr family [Clostridium novyi NT]
Length = 343
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 143/369 (38%), Positives = 209/369 (56%), Gaps = 29/369 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ +EL++ + K + R QI++WIY + + +F MS+IS+ + L +
Sbjct: 2 KNILNFTLDELKDWMDKN----SESKFRAKQIFQWIYKKAVFNFDDMSNISKSTKEKLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I P +V + +S DGT K+L IE+V + K ++CVS+Q+GC
Sbjct: 58 NFYIQIPNVVKKYVSNIDGTEKFLFE-----YEDGNIIESVVMKYKHGNSICVSTQIGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + +VRNLT+ EI+ QVL A+ + D +ISN+V+M
Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIIAQVLKAQKEICD-----------------RISNVVLM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
G GEPL N+DNV K L + +D L+ +R ITLST G VP I + +++ + LAISLH
Sbjct: 156 GSGEPLDNYDNVIKFLKLINDEDALNIGQRHITLSTCGIVPKIKELADQKMQITLAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N++R ++PI KY LE L+DACR+Y +N RITFEY ++KG+NDS +A LIK
Sbjct: 216 APNNEIRKSMMPIANKYTLEELLDACRYYYRTTNR-RITFEYALVKGVNDSRENAEELIK 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
I KG+ INLIP N Y S KDI F E + + G + IR G DI ACGQ
Sbjct: 275 ISKGMLCHINLIPVNEIKENNYERSKSKDIEEFKETLIKHGIETTIRREMGSDINGACGQ 334
Query: 365 LKSLSKRIP 373
L+ R
Sbjct: 335 LRRNYIRNN 343
>gi|20807945|ref|NP_623116.1| Fe-S-cluster redox protein [Thermoanaerobacter tengcongensis MB4]
gi|81590646|sp|Q8R9T4|RLMN_THETN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
tengcongensis MB4]
Length = 342
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 141/366 (38%), Positives = 203/366 (55%), Gaps = 30/366 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L M EE+EE + +G + R Q++KWIY + + DF M+DIS+ +R L +
Sbjct: 3 NLKDMTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEI 58
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I +I++ ++S D T K+L + IE V I K T CVS+QVGC++
Sbjct: 59 AYISELKIIERRVSQIDDTVKYLFLLEDKN-----IIEGVAIKYKFGNTACVSTQVGCNM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + VR+L A E++ QV+ S G KISNIV+MG
Sbjct: 114 KCKFCASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N+D V K + I ++ GL KR IT+ST G VP I + +E V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+LRN L+PINR YPLE L+ ACR+Y +N RITFEY ++ G+ND A L+ +
Sbjct: 216 PNNELRNELMPINRAYPLEELMKACRYYIEKTNR-RITFEYALIDGVNDKKEHAYQLVDL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N + S+ + ++ F + I+ +G + +R G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQL 334
Query: 366 KSLSKR 371
+ +
Sbjct: 335 RRKYLK 340
>gi|25010575|ref|NP_734970.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae NEM316]
gi|77413558|ref|ZP_00789746.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
gi|81588871|sp|Q8E6Q7|RLMN_STRA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|23094928|emb|CAD46149.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160387|gb|EAO71510.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
Length = 368
Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats.
Identities = 132/377 (35%), Positives = 211/377 (55%), Gaps = 26/377 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN
Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQYYGLSVCVTTQVGCN 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L
Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348
Query: 362 CGQLKSLSKRIPKVPRQ 378
CGQL+S + + + +
Sbjct: 349 CGQLRSNTMKRDRQKAK 365
>gi|86131691|ref|ZP_01050288.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
gi|85817513|gb|EAQ38687.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
Length = 346
Score = 355 bits (910), Expect = 8e-96, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 204/365 (55%), Gaps = 24/365 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+ + + +E+L + G R +Q+++W++ +G DF M++IS+E R LL
Sbjct: 4 EKKDIRKLTKEDLRAFFVDQG----DKAFRGNQVYEWLWQKGAHDFVDMTNISKETRILL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++HF I + + + S DGT K ++ + +E+V IP KSR T CVSSQVGC
Sbjct: 60 DEHFVINHIRVDQMQRSSDGTIKNAVKLH-----DGLTVESVLIPTKSRTTACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C FC T K +RNL +EI+ QV++ R +SNIV
Sbjct: 115 SLNCKFCATARLKRMRNLNPDEIVDQVVVIDR-------------QSKLYHDRPLSNIVF 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N++NV K++ +D GL S +RIT+STSG I ++ +E LA+SL
Sbjct: 162 MGMGEPLMNYNNVIKAIDKITDPEGLGMSPKRITVSTSGVPKIIKKMADEEVKFNLAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ +D+R ++P N + PL L +A ++ + RIT+EYV+ GIND D L+
Sbjct: 222 HSALDDVRTEIMPFNEQMPLADLKEALIYWYEKTGK-RITYEYVVWDGINDRQIDIDALL 280
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K +P+K+N+I +NP ++ ++ + I + + ++ +G + +R RG DI AACG
Sbjct: 281 DFCKAVPSKVNIIEYNPIDDGQFQQANPQAIDRYVDVLEANGVTVTVRRSRGKDIDAACG 340
Query: 364 QLKSL 368
QL +
Sbjct: 341 QLANK 345
>gi|15837061|ref|NP_297749.1| hypothetical protein XF0459 [Xylella fastidiosa 9a5c]
gi|81623829|sp|Q9PG43|RLMN_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|9105305|gb|AAF83269.1|AE003896_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 406
Score = 355 bits (910), Expect = 8e-96, Method: Composition-based stats.
Identities = 159/383 (41%), Positives = 220/383 (57%), Gaps = 28/383 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L
Sbjct: 27 KQNLLELNREGLERFFENV---LGEKRYRAHQVMKWIHHRYVSDFEQMTDVGKALRARLQ 83
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC
Sbjct: 84 ACAEVRVPCVVFDKHSADGTHKWLLAMDT---DSKNAIETVYIPDKGRGTLCVSSQIGCG 140
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VMM
Sbjct: 141 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVP-----------HQQRRLTNVVMM 189
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLHA
Sbjct: 190 GMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHA 249
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304
++ LR LVP+N+KYP+ L+ +C Y + +TFEY ++KG+ND A L+K
Sbjct: 250 PNDKLREQLVPLNKKYPIAELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELVK 309
Query: 305 ILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG
Sbjct: 310 LMRQFDCAMQVKGAAKVNLIPFNPFPGTYYERSTEVDIRAFQKILLDAQILAMVRRTRGD 369
Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
DI AACGQLK + + RQ
Sbjct: 370 DIDAACGQLKGQV--VDRTRRQA 390
>gi|317495216|ref|ZP_07953586.1| cfr family radical SAM enzyme [Gemella moribillum M424]
gi|316914638|gb|EFV36114.1| cfr family radical SAM enzyme [Gemella moribillum M424]
Length = 377
Score = 355 bits (910), Expect = 9e-96, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K S+ + ++LEE L+ IG + R QI+ W+Y + I F M ++ + ++ L
Sbjct: 19 EKMSIYSIRLDQLEEYLVSIG----EKKFRAKQIYDWLYKKRITSFTEMKNVPKSLQEKL 74
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IE+V + K +LCV++QVGC
Sbjct: 75 AEEFEITTLNTIIKQESIDGTMKFLFELQDK-----YTIESVLMKNKYGNSLCVTTQVGC 129
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L G +IS+IV+
Sbjct: 130 RIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQELD--------------KRGERISSIVI 175
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEP N+D + + I + + R IT+STSG VP I E I + A+SL
Sbjct: 176 MGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPKIYDFANEKIQINFAVSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR+ ++P+NR Y ++ L++A ++Y +N RITFEY ++ +ND A L
Sbjct: 236 HAPTNELRSKIMPVNRAYNIDKLMEALKYYQKTTNR-RITFEYGLMGKVNDQREHAEKLS 294
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+I+K + +NLIP N P Y+ + + DI F + +K++ + IR +G DI AACG
Sbjct: 295 EIIKDLNCHVNLIPINYVPERNYVRTSKNDIFAFEKVLKKNRVNVTIRRTQGDDIDAACG 354
Query: 364 QLKSLSKR 371
QL++ ++
Sbjct: 355 QLRAKERK 362
>gi|322373635|ref|ZP_08048171.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150]
gi|321278677|gb|EFX55746.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150]
Length = 389
Score = 355 bits (910), Expect = 9e-96, Method: Composition-based stats.
Identities = 135/375 (36%), Positives = 216/375 (57%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ REEL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN
Sbjct: 25 KPSIYGLTREELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 81 ENFCVNPLKQRIVQESKDGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 363 CGQLRSNTMKRDRQK 377
>gi|293374997|ref|ZP_06621292.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909]
gi|325843362|ref|ZP_08167945.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1]
gi|292646407|gb|EFF64422.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909]
gi|325489391|gb|EGC91764.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1]
Length = 347
Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats.
Identities = 119/367 (32%), Positives = 201/367 (54%), Gaps = 25/367 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+S+ + ++ + L + P + R +QI+ W++ + + MS++ ++++ L
Sbjct: 1 MEKKSIYSLDIQDWQNWLQEQKQP----KFRANQIFDWLFKKRVTSIDEMSNLPKDLKGL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + F + + ++++ DGT K+L IETV + K ++CV++QVG
Sbjct: 57 MQESFDVTTLKERKKQVASDGTTKFLFELS-----DGDLIETVLMRHKYGCSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC + L RNL A EI+ QVL + L + ++S+IV
Sbjct: 112 CRIGCKFCASTLSGLKRNLQAGEIVAQVLRVQQYLDE--------------SQERVSHIV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N++N+ K + I + GL+ R IT+STSG VP I ++ V A+S
Sbjct: 158 VMGIGEPFENYENLTKFIEIINSEKGLNIGSRHITVSTSGIVPKIYNFADQHPQVSFAVS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++LR L+PINR YPLE L++A ++Y +N RITFEY ++K +ND+ A L
Sbjct: 218 LHAPTDELRTQLMPINRAYPLEKLMEAVKYYIKQTNR-RITFEYGLIKNVNDTVECANQL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ + INLIP N P + + + I F + +K+ G + +R G DI AAC
Sbjct: 277 ADLVGRLNCHINLIPVNYVPERGFDRTPIEHIEKFEQTLKKRGVNVTVRRELGSDIDAAC 336
Query: 363 GQLKSLS 369
GQL++
Sbjct: 337 GQLRAKE 343
>gi|257084807|ref|ZP_05579168.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256992837|gb|EEU80139.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
Length = 357
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 134/379 (35%), Positives = 216/379 (56%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+I + + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNIPKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVENQ 357
>gi|319744504|gb|EFV96859.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813]
Length = 374
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN
Sbjct: 17 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 73 ENFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + G ++S+IV+M
Sbjct: 128 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 175
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 176 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 235
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L
Sbjct: 236 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 294
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 295 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 354
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+S + + + + Q
Sbjct: 355 CGQLRSNTMKRDRQKAKVGQ 374
>gi|126640570|ref|YP_001083554.1| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC
17978]
Length = 376
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 164/375 (43%), Positives = 218/375 (58%), Gaps = 23/375 (6%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Q I
Sbjct: 1 MSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 56
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLT 127
PE+V S DGTRKW+ R G +ETV IP SR TLC+SSQVGC+L
Sbjct: 57 APEVVHRHYSKDGTRKWVFRV---GEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALD 113
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC TG Q R+LT +EI+ Q+ +A + + + R ++N+VMMGM
Sbjct: 114 CSFCSTGKQGFQRDLTPDEIIGQLWMANYSYME--------EVPVAERERSVTNVVMMGM 165
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LAISLHA +
Sbjct: 166 GEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPN 225
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSPRDALNLI 303
++LRN LVPIN+KYPL LI AC+ Y + +T EYVML+G+ND P A L+
Sbjct: 226 DELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHAQQLL 285
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG DI AACG
Sbjct: 286 KLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACG 345
Query: 364 QLKSLSKRIPKVPRQ 378
QL + Q
Sbjct: 346 QLVGQVADRTRRAEQ 360
>gi|325286898|ref|YP_004262688.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga
lytica DSM 7489]
gi|324322352|gb|ADY29817.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga
lytica DSM 7489]
Length = 347
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 129/370 (34%), Positives = 210/370 (56%), Gaps = 24/370 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M KK+ + + +E++ + G R +Q+++W++ +G F+ M+++S+E
Sbjct: 1 MEKNKKKDIRALTKEQIRAFFVAQG----DKAFRGNQVYEWLWQKGAHSFEAMTNVSKET 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LL+ +F I + ++ + S DGT K ++ + +E+V IP K+R T CVSS
Sbjct: 57 RQLLDDNFVINHIKVDQMQRSSDGTIKNAVQLH-----DGLIVESVLIPTKTRTTACVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL C FC T K +RNL +EI QV+ + RK+S
Sbjct: 112 QVGCSLDCRFCATSRLKRMRNLNPDEIYDQVVAI-------------DNESRLYFDRKLS 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N++NV K++ + + GL+ S +RIT+STSG I ++ ++ L
Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIDKITSTEGLAMSPKRITVSTSGVPKMIKKMADDEVKFKL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +++R ++P N +PL+ L +A +++ + + RIT+EYV+ GIND+ DA
Sbjct: 219 AVSLHSAVDEIRTSIMPFNATFPLKDLREALQYWYAKTKS-RITYEYVVWDGINDTQNDA 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ + P+K+NLI +NP E+ + K I + ++R+G + +R RG DI
Sbjct: 278 NALVDFCRFAPSKVNLIEYNPIDDGEFQQASNKAIDMYVTTLERNGITVTVRRSRGKDID 337
Query: 360 AACGQLKSLS 369
AACGQL + S
Sbjct: 338 AACGQLANKS 347
>gi|159900818|ref|YP_001547065.1| ribosomal RNA large subunit methyltransferase N [Herpetosiphon
aurantiacus ATCC 23779]
gi|205829775|sp|A9AY55|RLMN_HERA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|159893857|gb|ABX06937.1| radical SAM enzyme, Cfr family [Herpetosiphon aurantiacus ATCC
23779]
Length = 363
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 122/361 (33%), Positives = 196/361 (54%), Gaps = 11/361 (3%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ + + L L ++G P R QI+ +Y + DF M+D+ +R L +
Sbjct: 2 NIYDLDLKGLTAQLTELGQPA----FRARQIYAHLYKKLANDFAAMTDLPAALREQLTAN 57
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I E+V E+ + DG + +L RC G V + I R T+CVS+Q GC++
Sbjct: 58 LQIGSLELVREQTTDDGLTRKVL---WRCPGDAVIETVLMIYPPDRATICVSTQAGCAMG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L+RN+++ EI+ QVL L + I V I+N+V MGM
Sbjct: 115 CVFCATGKLGLLRNISSGEIMEQVLYFERYLRN--EGAAIAKRHGGPVPDHITNLVFMGM 172
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEP N++ ++ +D G + R +T+ST G V I ++ +E V LA+SLHA
Sbjct: 173 GEPFANYERWWAAVERLNDKQGFNLGARNMTVSTVGLVKGIRQLADEALQVNLAVSLHAP 232
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ L+P+N ++ + L+DA R+Y ++ R++FEYV+L ND+P A L ++
Sbjct: 233 NDQLRSELMPVNDRFDISDLMDAIRYYTDKTHR-RVSFEYVLLDDKNDTPELAAQLASLV 291
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KG+ +NLIP+NP PG S ++ + F ++ +G S +R RG++I AACGQL
Sbjct: 292 KGMLCHVNLIPWNPIPGTPLTRSHRERVTAFQRVVQAAGISCTVRVERGVEIAAACGQLA 351
Query: 367 S 367
+
Sbjct: 352 A 352
>gi|55821670|ref|YP_140112.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus LMG 18311]
gi|81560179|sp|Q5M2V3|RLMN_STRT2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|55737655|gb|AAV61297.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|312279010|gb|ADQ63667.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus ND03]
Length = 389
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 135/375 (36%), Positives = 216/375 (57%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN
Sbjct: 25 KPSIYGLTRDELIDWAVEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 81 DNFCVNPLKQRIVQESKDGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + TF + +K++G + +R G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVATFYDVLKKNGVNCVVRQEHGTDIDAA 362
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 363 CGQLRSNTMKRDRQK 377
>gi|86140644|ref|ZP_01059203.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis
MED217]
gi|85832586|gb|EAQ51035.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis
MED217]
Length = 347
Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats.
Identities = 132/370 (35%), Positives = 204/370 (55%), Gaps = 25/370 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +K + + REEL + + G R +Q+++W++V+G F M++IS+E
Sbjct: 1 MKNTQK-DIRALSREELRDFFVSQG----EKAFRGNQVYEWLWVKGAHSFDDMTNISKET 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L++HF I + ++ + S DGT K ++ + +E+V IP SR T CVSS
Sbjct: 56 RAFLDEHFVINHIKVDQMQRSSDGTIKNAVKLH-----DNLTVESVLIPTASRITACVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL C FC T K +RNL +EI QV+ + R +S
Sbjct: 111 QVGCSLNCKFCATARLKRMRNLNPDEIFDQVVAI-------------DQQSRLYHNRPLS 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N+ NV KS+ +D GL S +RIT+STSG I ++ ++ L
Sbjct: 158 NIVFMGMGEPLMNYKNVVKSIEKITDPEGLGMSPKRITVSTSGVPKIIKKMADDEVKFNL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +D+R ++P N + PL+ L +A +++ + +RIT+EYV+ +GIND +D
Sbjct: 218 AVSLHSALDDVRTDIMPFNEQMPLQELKEALQYWY-VKTKKRITYEYVVWRGINDQDKDI 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
LI +P+K+NLI +NP ++ +D I + ++ G + +R RG DI
Sbjct: 277 EALIDFCLAVPSKVNLIEYNPIDDGQFQQADPLAIDRYVAKLEDRGITVTVRRSRGKDID 336
Query: 360 AACGQLKSLS 369
AACGQL + +
Sbjct: 337 AACGQLANKN 346
>gi|126649673|ref|ZP_01721909.1| Radical SAM family enzyme [Bacillus sp. B14905]
gi|126593392|gb|EAZ87337.1| Radical SAM family enzyme [Bacillus sp. B14905]
Length = 380
Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats.
Identities = 126/372 (33%), Positives = 205/372 (55%), Gaps = 26/372 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
KES+ +LEE L + G R +QI+ W+Y + ++ F+ MS++S+ +R L
Sbjct: 34 KESIYSFQPHQLEEWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F++ + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQLQ-----DGYSIETVLMRHEYGNSVCVTTQVGCR 144
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L R+L A EI+ QV+ + L + ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDEVS--------------ERVSHIVIM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+D + L + + GL+ R IT+STSG VP I + +E + A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + + R L+PI R Y LE L++A R+Y + RR++FEY ++ G NDS A L
Sbjct: 251 APNQEARQKLMPIARAYKLEELMEAVRYYTKKT-GRRVSFEYGLMSGENDSVEIAEELSA 309
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KGI +NLIP N P +Y+ + + I F + +K++G + IR +G DI AACGQ
Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369
Query: 365 LKSLSKRIPKVP 376
L++ +R +
Sbjct: 370 LRAQ-ERSEETR 380
>gi|237747707|ref|ZP_04578187.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter
formigenes OXCC13]
gi|229379069|gb|EEO29160.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter
formigenes OXCC13]
Length = 387
Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats.
Identities = 148/380 (38%), Positives = 215/380 (56%), Gaps = 19/380 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L+G +L E K+ R Q+ +WI+ G+ DF M+D+++ +R L
Sbjct: 5 RTNLLGFSPVQLVEYCQKL----NEKPFRAKQLQRWIHQFGVSDFAEMTDLAKSLRGKLE 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ P+I+ + +S DGTRKWLL G IETV+IPE +RGTLCVS+Q GC+
Sbjct: 61 LCAEVKAPDILKDTVSSDGTRKWLLDV-----GAGNAIETVFIPEDTRGTLCVSTQAGCA 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q RNLT EI+ Q+ +A + +G+ R+ISN+VMM
Sbjct: 116 VNCLFCSTGKQGFSRNLTTAEIIGQLWMAEFAVR------RSKGLTDAKDERQISNVVMM 169
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFD +L + D S+RR+T+STSG VP I R+ +E V LA+SLHA
Sbjct: 170 GMGEPLFNFDASVSALKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECPVALAVSLHA 229
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ LR+ LVP+N+K+PL+ L+ AC+ Y + ITFEY ML GIND+ A L+K+
Sbjct: 230 PNDTLRDHLVPLNKKHPLKELMAACQRYLDYAPRDFITFEYCMLDGINDTDEHARELVKL 289
Query: 306 LKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+K P K+NLIPFN S + +F++ + +G + +R RG DI AA
Sbjct: 290 VKHGPNPVSCKLNLIPFNSIAMPGLKRSTDARVQSFAKILLDAGIVTTVRKARGEDIEAA 349
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CG L K ++ + +
Sbjct: 350 CGLLAGEIKDRTRIQERMAE 369
>gi|258511306|ref|YP_003184740.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478032|gb|ACV58351.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 348
Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 209/366 (57%), Gaps = 27/366 (7%)
Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
L EEL + ++ ++G R Q+++W+Y + + F M+++ + +R LN
Sbjct: 2 VHLYDFTLEELRDWVVRELG----ERPFRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLN 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + + V + S D T K+LL +P V +E+V + ++CVSSQVGC
Sbjct: 58 EMAYLRSAKQVVRQDSKVDPTTKFLLAWP-----DGVTVESVLMRHGYGNSVCVSSQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + ++R++TA E++ QV+ ++SLL + G+++S++V+
Sbjct: 113 KMGCTFCASTLGGMIRHMTAGEMVEQVMHSQSLLDEV--------------GQRVSSVVV 158
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG GEP+ N+D V + + I ++ GL+ +R IT+ST G VP I R+ EE + LA+SL
Sbjct: 159 MGSGEPMDNYDQVMRFIDIITNEHGLNIGQRHITVSTVGLVPGIRRLAEEGRQITLAVSL 218
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ +R ++P+N+ YP+ L++AC Y + RRI+FEY ++ G NDS A L
Sbjct: 219 HAPNDAIRGRMMPVNKAYPIAKLMEACHDYYRKT-GRRISFEYALVAGENDSLECAKELA 277
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++KG+P +NLIP N P Y +D+K I F + +G ++ IR G DI AACG
Sbjct: 278 ELVKGLPCHVNLIPVNYVPERGYRRTDRKQIFAFWRALLDAGVNATIRREMGHDIAAACG 337
Query: 364 QLKSLS 369
QL++
Sbjct: 338 QLRAQY 343
>gi|251797737|ref|YP_003012468.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
JDR-2]
gi|247545363|gb|ACT02382.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
Length = 348
Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 204/369 (55%), Gaps = 25/369 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + ++L++ + + G P R Q++ W+YV+ ++ F+ MS++ + +R L
Sbjct: 2 KPIIYDYNLDQLQDWMKENGEPA----FRGGQLFDWLYVKRVKSFEEMSNLPKPLREKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L IETV + + ++CV++QVGC
Sbjct: 58 ESFQFVTLSEITKFESKDGTVKFLFGLH-----DNHAIETVIMRHEYGNSICVTTQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RNLTA EI+ QV+ A+ +L + G ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLTAGEIVAQVVTAQQMLD--------------ATGERVSSIVIM 158
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N+D L I GL+ +R IT+STSG VP++ + EE + LAIS+H
Sbjct: 159 GSGEPFENYDATMTFLRIMIHEKGLNIGQRHITVSTSGIVPSMYKFTEENTQINLAISIH 218
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ L+P+NR++P E ++ ACR++ + RRITFEY ++ G+ND A L
Sbjct: 219 APNDKLRSKLMPVNRRFPFEDVMAACRNHIAKT-GRRITFEYALIGGVNDQAEHAQELAD 277
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+ +NLIP N P Y+ + + DI F ++++ + IR +G DI AACGQ
Sbjct: 278 VLQGMLCHVNLIPVNHVPERNYVRTPRNDIFEFQRILEKNKINCTIRREQGHDIAAACGQ 337
Query: 365 LKSLSKRIP 373
L++
Sbjct: 338 LRAKHMEST 346
>gi|319953716|ref|YP_004164983.1| 23S rRNA m(2)a-2503 methyltransferase [Cellulophaga algicola DSM
14237]
gi|319422376|gb|ADV49485.1| 23S rRNA m(2)A-2503 methyltransferase [Cellulophaga algicola DSM
14237]
Length = 347
Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 204/370 (55%), Gaps = 24/370 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +KK+ + + +E+L E + G R +Q+++W++ +G F+ M+++S+E
Sbjct: 1 MDTIKKKDIRALTKEQLREFFVTNG----DKAFRGNQVYEWLWQKGAHSFEAMTNVSKET 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R +L Q+F I + ++ + S DGT K +R + +E+V IP K+R T CVSS
Sbjct: 57 RDMLEQNFVINHIKVDVMQRSNDGTIKNAVRLH-----DDLIVESVLIPTKTRSTACVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL C FC T K +RNL +EI QV+ + R +S
Sbjct: 112 QVGCSLDCKFCATSRLKRMRNLNPDEIYDQVVAI-------------DNESRLYFNRPLS 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N++NV K++ + + GL S +RI +STSG I ++ ++ L
Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIDMITSPEGLGMSPKRIVVSTSGVPKMIRKMADDEVKFKL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +++R ++P N + L L + +++ + RIT+EYV+ KGINDS +D
Sbjct: 219 AVSLHSAIDEIRTSIMPFNANFTLTDLRQSLQYWYAKT-RSRITYEYVIWKGINDSQKDV 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ K P+K+NLI +NP E+ + I + +++ + +R RG DI
Sbjct: 278 DALVDFCKFAPSKVNLIEYNPIDDGEFQQASNAAIDMYVNTLEQHNIAVTVRRSRGKDID 337
Query: 360 AACGQLKSLS 369
AACGQL + S
Sbjct: 338 AACGQLANKS 347
>gi|29376559|ref|NP_815713.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis V583]
gi|227520169|ref|ZP_03950218.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
gi|227555397|ref|ZP_03985444.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
gi|229549611|ref|ZP_04438336.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
gi|255972309|ref|ZP_05422895.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255975469|ref|ZP_05426055.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256956502|ref|ZP_05560673.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256961519|ref|ZP_05565690.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256962655|ref|ZP_05566826.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257079424|ref|ZP_05573785.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
gi|257082189|ref|ZP_05576550.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257090325|ref|ZP_05584686.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257416428|ref|ZP_05593422.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
gi|257419673|ref|ZP_05596667.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|293382216|ref|ZP_06628158.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
gi|293388635|ref|ZP_06633131.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
gi|294780328|ref|ZP_06745697.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
gi|300860541|ref|ZP_07106628.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
Ef11]
gi|307270284|ref|ZP_07551592.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
gi|307277716|ref|ZP_07558802.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
gi|307287862|ref|ZP_07567895.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
gi|312900861|ref|ZP_07760155.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
gi|312902828|ref|ZP_07762032.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|312908292|ref|ZP_07767256.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
gi|312951214|ref|ZP_07770116.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
gi|81585123|sp|Q833B6|RLMN_ENTFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|29344023|gb|AAO81783.1| conserved hypothetical protein TIGR00048 [Enterococcus faecalis
V583]
gi|227072382|gb|EEI10345.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
gi|227175440|gb|EEI56412.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
gi|229305276|gb|EEN71272.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
gi|255963327|gb|EET95803.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968341|gb|EET98963.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256946998|gb|EEU63630.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256952015|gb|EEU68647.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256953151|gb|EEU69783.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256987454|gb|EEU74756.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
gi|256990219|gb|EEU77521.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256999137|gb|EEU85657.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257158256|gb|EEU88216.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257161501|gb|EEU91461.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|291080400|gb|EFE17764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
gi|291082010|gb|EFE18973.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
gi|294452592|gb|EFG21025.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
gi|300849580|gb|EFK77330.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
Ef11]
gi|306501007|gb|EFM70314.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
gi|306505595|gb|EFM74779.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
gi|306513338|gb|EFM81962.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
gi|310625706|gb|EFQ08989.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
gi|310630748|gb|EFQ14031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
gi|310633882|gb|EFQ17165.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|311291960|gb|EFQ70516.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
gi|315031044|gb|EFT42976.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
gi|315034600|gb|EFT46532.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
gi|315143477|gb|EFT87493.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
gi|315149242|gb|EFT93258.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
gi|315152618|gb|EFT96634.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
gi|315159454|gb|EFU03471.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
gi|315164747|gb|EFU08764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
gi|315167578|gb|EFU11595.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
gi|315171638|gb|EFU15655.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
gi|315173222|gb|EFU17239.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
gi|315575041|gb|EFU87232.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
gi|315576758|gb|EFU88949.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
gi|315582467|gb|EFU94658.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
gi|327535508|gb|AEA94342.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
gi|329568816|gb|EGG50616.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
Length = 357
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 135/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|312863236|ref|ZP_07723474.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis
F0396]
gi|322516113|ref|ZP_08069048.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC
49124]
gi|311100772|gb|EFQ58977.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis
F0396]
gi|322125408|gb|EFX96758.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC
49124]
Length = 389
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 134/375 (35%), Positives = 216/375 (57%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN
Sbjct: 25 KHSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 81 ENFCVNPLKQRIVQESKDGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 363 CGQLRSNTMKRDRQK 377
>gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi
SZ]
gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ]
Length = 351
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 143/372 (38%), Positives = 210/372 (56%), Gaps = 29/372 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L + LE+ L G R R +QI+KW+Y + F M+++S+ +R L
Sbjct: 6 RTDLKNLTLPALEQFLQGQG----KERYRATQIFKWLYQHDVSSFDEMTNVSKALRAELV 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I E ++ DGTRK+L +E+V IP++ R TLC+SSQ GC+
Sbjct: 62 RTACISRLEPETVEVGSDGTRKYLFMLE-----DGNAVESVIIPDEDRNTLCISSQAGCA 116
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TGT L RNLT EI+ Q+L + + ++ NIVMM
Sbjct: 117 MQCAFCLTGTFSLTRNLTTAEIVNQILAVQRDV-------------------EVRNIVMM 157
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N DNV +L I ++ GL S RR+T+ST G VP + R+G E+ V LA+SL+A
Sbjct: 158 GMGEPLHNLDNVIPALQIMAEDNGLQLSSRRVTVSTCGLVPELERLGREVTVNLAVSLNA 217
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR+ ++P+N+ YP+ L+ A ++YP L R+IT EYV+L G+ND+P DA L+++
Sbjct: 218 TTDELRDRIMPVNKAYPIATLLAALKNYP-LPGRRKITIEYVLLGGLNDTPEDAKRLVRL 276
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L IP KINLIPFNP G ++ + + F + + ++ R RG DI AACGQL
Sbjct: 277 LSDIPCKINLIPFNPHEGADFRPPSRAALDAFHKYLLDRHFTVITRDSRGSDISAACGQL 336
Query: 366 KSLSKRIPKVPR 377
K R P
Sbjct: 337 KGKLDRKPSQES 348
>gi|169827065|ref|YP_001697223.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
sphaericus C3-41]
gi|205829785|sp|B1HQE6|RLMN_LYSSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|168991553|gb|ACA39093.1| UPF0063 protein [Lysinibacillus sphaericus C3-41]
Length = 380
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 205/372 (55%), Gaps = 26/372 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
KES+ +LE+ L + G R +QI+ W+Y + ++ F+ MS++S+ +R L
Sbjct: 34 KESIYSFQPHQLEDWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F++ + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQLQ-----DGYSIETVLMRHEYGNSVCVTTQVGCR 144
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L R+L A EI+ QV+ + L + ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDEV--------------NERVSHIVIM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+D + L + + GL+ R IT+STSG VP I + +E + A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + + R L+PI R Y L+ L++A R+Y + RR++FEY ++ G NDS A L
Sbjct: 251 APNQEARQKLMPIARAYKLDELMEAVRYYTKKT-GRRVSFEYGLMSGENDSVEIAEELSA 309
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KGI +NLIP N P +Y+ + + I F + +K++G + IR +G DI AACGQ
Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369
Query: 365 LKSLSKRIPKVP 376
L++ +R +
Sbjct: 370 LRAQ-ERSEETR 380
>gi|229542943|ref|ZP_04432003.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1]
gi|229327363|gb|EEN93038.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1]
Length = 355
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 137/379 (36%), Positives = 222/379 (58%), Gaps = 27/379 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+S+ G+ ++L +L+ G + R Q+W+W+Y + ++ F M++++++ L
Sbjct: 1 MEKKSIFGLTIDQLTGWMLEHG----QKKFRAQQVWEWLYQKRVKSFAEMTNVNKDCLAL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +HF I + V ++ S DGT K+L + IETV + + ++CV++QVG
Sbjct: 57 LEEHFHIHTLKQVVKQESKDGTVKFLFQLK-----DGNLIETVLMRQHYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G + R+L + EI+ Q++ + + G ++S++V
Sbjct: 112 CNIGCSFCASGLLRKNRDLESGEIVEQIMYVQKHFDE------------AGKGERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP NF+NV L I + GL+ R IT+STSG P I + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFENVVNFLKIINAPKGLAIGARHITVSTSGLAPKIYAFADLDLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR+ ++ INR YPLE L+ A +Y +N RITFEY++LK +ND +AL L
Sbjct: 220 LHAPNNELRSRIMKINRAYPLEKLMPAIDYYLEKTNR-RITFEYILLKDVNDHKEEALQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K+L K A +NLIP+NP Y S+++ I+TF + +K++G + +R G DI A
Sbjct: 279 AKLLQDKRHLAYVNLIPYNPVNEHGYQRSEKESIMTFYDTLKKNGINCVVRQEHGTDIDA 338
Query: 361 ACGQLKSLSKRIPKVPRQE 379
ACGQL+ SK+I K R
Sbjct: 339 ACGQLR--SKQIKKANRTA 355
>gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|258614592|ref|ZP_05712362.1| hypothetical protein EfaeD_02673 [Enterococcus faecium DO]
gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
Length = 355
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 131/374 (35%), Positives = 218/374 (58%), Gaps = 26/374 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++
Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L++HF I + + + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LSEHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S++V
Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+DNV L I +D+ GL+ R IT+STSG I V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L++A Y +N RITFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278
Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+LK A +NLIP+NP + Y S + D++ F + +K++G + IR G DI
Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIP 373
AACGQL+S +
Sbjct: 339 AACGQLRSKQMKKT 352
>gi|256619523|ref|ZP_05476369.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|307275985|ref|ZP_07557118.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
gi|256599050|gb|EEU18226.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|306507315|gb|EFM76452.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
gi|315146175|gb|EFT90191.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244]
Length = 357
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 135/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|168186788|ref|ZP_02621423.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str.
Eklund]
gi|169295142|gb|EDS77275.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str.
Eklund]
Length = 343
Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats.
Identities = 138/369 (37%), Positives = 206/369 (55%), Gaps = 29/369 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ +EL++ + G + R QI++WIY + + +F M++IS+ + L +
Sbjct: 2 KNILDFTLDELKDWMDTNG----ESKFRAKQIFQWIYKKAVFNFDDMTNISKGTKEKLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I P ++ + S DGT K+L IE+V + K ++CVS+Q+GC
Sbjct: 58 NFCIQIPNVIKKYKSNIDGTEKFLFE-----YEDGNIIESVVMKYKHGNSICVSTQIGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + +VRNLT+ EI+ QVL A+ + D +ISN+V+M
Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIIAQVLKAQKEIDD-----------------RISNVVLM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G GEPL N+DNV K L + + L +R ITLST G VP I + +E + + LAISLH
Sbjct: 156 GSGEPLDNYDNVLKFLKLINHDDTLKIGQRHITLSTCGVVPKIKELADEKMQITLAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N++R ++PI KY L+ L++ CR+Y ++ RRITFEY ++KG+NDS +A LIK
Sbjct: 216 APNNEIRKSMMPIASKYTLDELLETCRYYY-ITTNRRITFEYALVKGVNDSRENAEELIK 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
LKG+ INLIP N Y S KDI F E + + G + IR G DI ACGQ
Sbjct: 275 KLKGMLCHINLIPVNEIKENNYERSKSKDIEEFKETLIKYGIETTIRREMGSDINGACGQ 334
Query: 365 LKSLSKRIP 373
L+ R
Sbjct: 335 LRRNYIRNN 343
>gi|257087248|ref|ZP_05581609.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256995278|gb|EEU82580.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|315026051|gb|EFT37983.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
Length = 357
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 135/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIQKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|115377093|ref|ZP_01464309.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
gi|310821316|ref|YP_003953674.1| ribosomal RNA large subunit methyltransferase n 2 [Stigmatella
aurantiaca DW4/3-1]
gi|115365932|gb|EAU64951.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
gi|309394388|gb|ADO71847.1| Ribosomal RNA large subunit methyltransferase N 2 [Stigmatella
aurantiaca DW4/3-1]
Length = 381
Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats.
Identities = 151/372 (40%), Positives = 214/372 (57%), Gaps = 18/372 (4%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
+ E L L + R Q+++W++ RG+ F M+D+S+ +R L + I
Sbjct: 27 SLTLEGLARFLTEQ---LGERAFRAGQVYRWLHQRGVTSFDEMTDLSKALRQKLKEQAEI 83
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
+ E++S DGT K+ + IE+VY+P + R TLCVS+QVGC++ CSF
Sbjct: 84 VPLVKDLEQVSIDGTIKYRFKTR-----DGRFIESVYMPSEDRKTLCVSTQVGCAMKCSF 138
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C TGT L RNLT EI+ QV + G E R +SN+V MGMGEP
Sbjct: 139 CMTGTLGLKRNLTPGEIVAQVHTVNREVRAREGLETY---------RPLSNLVFMGMGEP 189
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDL 250
L NF+N+K +LSI G +FS R IT+ST G VP I R G+E V LAISL+A +++
Sbjct: 190 LHNFENLKTALSILQSQDGPNFSHRHITVSTVGLVPMIERFGQETDVKLAISLNASTDEQ 249
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
RN +P+NRK+ +E L++ACR +P L RRITFEYV+L+G NDS DA LI++L+GIP
Sbjct: 250 RNQTMPVNRKWNIEALLEACRKFP-LRQGRRITFEYVLLRGFNDSDEDAYRLIELLRGIP 308
Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
AK+NLIP+N PG + + ++ F + ++ IR RG DI ACGQL + S
Sbjct: 309 AKVNLIPYNENPGLGFHTTGEERAEQFRAILAEGHIAAFIRQNRGRDIAGACGQLANRSG 368
Query: 371 RIPKVPRQEMQI 382
+ Q ++
Sbjct: 369 QDAAQSTQAPEL 380
>gi|77164417|ref|YP_342942.1| hypothetical protein Noc_0900 [Nitrosococcus oceani ATCC 19707]
gi|254434279|ref|ZP_05047787.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27]
gi|123744359|sp|Q3JCN4|RLMN_NITOC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|76882731|gb|ABA57412.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosococcus oceani ATCC
19707]
gi|207090612|gb|EDZ67883.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27]
Length = 372
Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats.
Identities = 162/378 (42%), Positives = 219/378 (57%), Gaps = 20/378 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ +L+ + R L+ +G R Q+ +WI+ R + DF M+D+++ +R L
Sbjct: 4 SRTNLLNLDRAGLDAFFTCLG----EKPFRARQVLRWIHQRFVTDFSAMTDLNKSLRERL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PEI+ + S DGT KWLLR G IETV+IPE RGTLC+SSQ+GC
Sbjct: 60 TESAVISLPEIIKQHRSADGTHKWLLRMH-----GNNCIETVFIPEGDRGTLCISSQIGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L CSFC TG Q RNL EI+ Q+ LA LG P E R I+N+VM
Sbjct: 115 ILDCSFCATGKQGFNRNLAVSEIIGQLWLANKTLGRDPKGE-----------RIITNVVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL NF+NV ++++ D S RR+TLST+G VP + R+ V LA+SLH
Sbjct: 164 MGMGEPLANFNNVVTAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAVCPVNLAVSLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ LVP+N+KYPL+ L+ ACR Y R +TFEYVML G+NDS A L++
Sbjct: 224 APTDKLRDELVPLNKKYPLQDLLSACRRYVAGDRRRAVTFEYVMLAGVNDSLPHARALLR 283
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+PAK+NLIPFNP+ G Y SD I F E + R G + R RG DI AACGQ
Sbjct: 284 LLRGLPAKVNLIPFNPFSGSVYRRSDAATIDRFREELLRGGIMTVTRKTRGDDIAAACGQ 343
Query: 365 LKSLSKRIPKVPRQEMQI 382
L + + ++
Sbjct: 344 LAGRVQDRTRRTMDRQRL 361
>gi|225181331|ref|ZP_03734775.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1]
gi|225167912|gb|EEG76719.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1]
Length = 347
Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 193/367 (52%), Gaps = 25/367 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K +L+ + EL+E +G P R Q+ W+Y +G + F M+++ + +R
Sbjct: 1 MDKVNLLELSTSELQEFFQSLGQPA----FRAKQVMDWLYQQGAQTFNEMTNLPKGLREQ 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q + +V E++S DGT K+L P +ETV +P + C+S+QVG
Sbjct: 57 LAQKAVPGFLSVVTEQVSEDGTEKYLFALP-----DGQTVETVVLPYDIGFSACISTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC +G VRNLTA EI+ QVL ++ L G+++ ++V
Sbjct: 112 CKMGCLFCASGLPGFVRNLTAAEIMAQVLQVKNALR--------------KRGKELKSLV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG GEPL NF L D L+ S R +TLSTSG VP I + + + LA+S
Sbjct: 158 LMGSGEPLDNFRETIAFLEAVRDPQKLAMSLRHVTLSTSGLVPKIEELAKLGWPLNLAVS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N +R+ ++P+N+ YPLE L+ AC Y + RR+T+EY+++ +ND A L
Sbjct: 218 LHASNNRVRDKIMPVNKTYPLEPLLSACDTY-SRATGRRVTYEYILIDRLNDKTEHAKEL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LKG +NLIP N S Q + F + +++ G + +R G DI AAC
Sbjct: 277 ASLLKGRLCHVNLIPLNAVDELGLKPSPQNTVKQFRDTLRQKGVNVTVRRKLGADIAAAC 336
Query: 363 GQLKSLS 369
GQL++
Sbjct: 337 GQLRNEY 343
>gi|182420424|ref|ZP_02951644.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521]
gi|237668483|ref|ZP_04528467.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182375710|gb|EDT73310.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521]
gi|237656831|gb|EEP54387.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 347
Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats.
Identities = 144/377 (38%), Positives = 208/377 (55%), Gaps = 35/377 (9%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +L+ +EL+ + + G R QI WIY +G+ DF+GM +I + +
Sbjct: 1 MN-----NLLDYTLDELKVWMSENG----ESAFRGKQILSWIY-KGVMDFKGMKNIPKSL 50
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
+ L ++F+I PEIV+ S DGT K+LL F IE+V + K ++C+S
Sbjct: 51 INKLEENFTITMPEIVEVYKSELDGTEKFLLGFS-----DGNLIESVLMRYKHGNSICIS 105
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+QVGC + C FC + + VRNLT EIL +V+ ++ +G+ +I
Sbjct: 106 TQVGCRMGCKFCASTIEGRVRNLTTGEILSEVIAVQNYIGE-----------------RI 148
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
SNIV+MG GEPL N+DNV K L I S GL+ +R ITLST G VP I + + E+ +
Sbjct: 149 SNIVLMGSGEPLDNYDNVVKFLEIVSADYGLNIGQRHITLSTCGIVPKIYELADKELSIT 208
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLHA S++ R ++PI KY + L++ACR+Y + RITFEY ++K +ND D
Sbjct: 209 LAISLHAFSDEKRKEIMPIANKYTISELLEACRYYLNKTKR-RITFEYALVKDVNDGMED 267
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L K+L G+ +NLIP N + S +K I FSE ++ +G R G DI
Sbjct: 268 AKALGKLLSGMLCHVNLIPVNEIKENSFKRSSKKAIDDFSEILRNNGIEVTTRREMGSDI 327
Query: 359 LAACGQLKSLSKRIPKV 375
AACGQL+ K+
Sbjct: 328 NAACGQLRRSYIETQKI 344
>gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
Length = 355
Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats.
Identities = 131/377 (34%), Positives = 217/377 (57%), Gaps = 26/377 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++
Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ HF I + + + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LSAHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S++V
Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+DNV L I +D+ GL+ R IT+STSG I V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L++A Y +N RITFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278
Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+LK A +NLIP+NP + Y S + D++ F + +K++G + IR G DI
Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVP 376
AACGQL+S +
Sbjct: 339 AACGQLRSKQMKKTAAK 355
>gi|323481183|gb|ADX80622.1| radical SAM superfamily protein [Enterococcus faecalis 62]
Length = 357
Score = 352 bits (902), Expect = 7e-95, Method: Composition-based stats.
Identities = 135/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|253682293|ref|ZP_04863090.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
gi|253562005|gb|EES91457.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
Length = 343
Score = 352 bits (902), Expect = 8e-95, Method: Composition-based stats.
Identities = 132/369 (35%), Positives = 204/369 (55%), Gaps = 29/369 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ EEL+ + + G + R QI++WIY + F M++IS+ + L
Sbjct: 2 KNILDFDLEELKSWMAENG----ESKFRAKQIFEWIYKKSAFSFHEMTNISKASKEKLKN 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I P I+ + S DGT K+L + IE+V + K ++CVS+Q+GC
Sbjct: 58 SFYIEIPNIIKKYKSNIDGTEKFLFEYK-----DGNIIESVVMRYKHGNSICVSTQIGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + + +VRNLT+ EI+ Q+L A+ +G+ +ISN+V+M
Sbjct: 113 MGCKFCASTVEGVVRNLTSGEIVAQILKAQQEIGE-----------------RISNVVLM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+DNV K + + +D L +R ITLST G VP I + +E + LAISLH
Sbjct: 156 GSGEPLDNYDNVVKFIKLINDDNALKIGQRHITLSTCGIVPKIKELADEKLQITLAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++++R ++P+ KY ++ L+DAC++Y ++N RITFEY ++ GINDS ++A L
Sbjct: 216 APNDEIRKSMMPVANKYNIKELLDACKYYSRITNR-RITFEYALVNGINDSAKNAEELFN 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
LKGI +NLIP N +Y S K+I F + + G + IR G DI ACGQ
Sbjct: 275 QLKGILCHVNLIPVNEIKENDYKRSRAKNIEEFKNILIKYGIETTIRREMGSDINGACGQ 334
Query: 365 LKSLSKRIP 373
L+ +
Sbjct: 335 LRRNYIKNN 343
>gi|257422170|ref|ZP_05599160.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|257163994|gb|EEU93954.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|315157206|gb|EFU01223.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
Length = 357
Score = 352 bits (902), Expect = 8e-95, Method: Composition-based stats.
Identities = 135/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVATFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|283797835|ref|ZP_06346988.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
gi|291074523|gb|EFE11887.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
Length = 376
Score = 352 bits (902), Expect = 8e-95, Method: Composition-based stats.
Identities = 124/371 (33%), Positives = 197/371 (53%), Gaps = 29/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M ELE L ++G R Q+++W++V+ F M+++S+ +R L +
Sbjct: 33 TDIKSMTLPELEAYLKEMG----EKPFRAKQLYQWMHVKLAASFDEMTNLSKGLRETLGR 88
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
VD +IS DGTRK+L IE+V + K ++C+SSQVGC
Sbjct: 89 QCFYASLTPVDVRISAVDGTRKYLFELS-----DGNVIESVLMRYKHGNSVCISSQVGCR 143
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + L RNL E+L Q+ + G ++SN+V+M
Sbjct: 144 MGCRFCASTLDGLERNLKPSEMLEQIYRIQR-----------------DTGERVSNVVVM 186
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP+ N+DN+ + + + +D GL+ S+R +T+ST G VP I + EE V LA+SLH
Sbjct: 187 GSGEPMDNYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTLALSLH 246
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++++R L+P+ + Y L ++DAC +Y + RR+TFEY ++KG+ND+ +A L +
Sbjct: 247 APNDEVRKTLMPVAKSYALRDVLDACHYYFEKT-GRRLTFEYSLVKGVNDNLEEARALAE 305
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++K +NLIP NP +Y SD+K I F ++R G + +R G DI ACGQ
Sbjct: 306 LIKDQHGHVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDIDGACGQ 365
Query: 365 LKSLSKRIPKV 375
L+ +
Sbjct: 366 LRKSYIEKERT 376
>gi|295091952|emb|CBK78059.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf.
saccharolyticum K10]
Length = 376
Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats.
Identities = 124/371 (33%), Positives = 197/371 (53%), Gaps = 29/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M ELE L ++G R Q+++W++V+ F M+++S+ +R L +
Sbjct: 33 TDIKSMTLPELEAYLKEMG----EKPFRAKQLYQWMHVKLAASFDEMTNLSKGLRETLGR 88
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
VD +IS DGTRK+L IE+V + K ++C+SSQVGC
Sbjct: 89 QCFYASLTPVDVRISAVDGTRKYLFELS-----DGNVIESVLMRYKHGNSVCISSQVGCR 143
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + L RNL E+L Q+ + G ++SN+V+M
Sbjct: 144 MGCRFCASTLDGLERNLKPSEMLEQIYRIQR-----------------DTGERVSNVVVM 186
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP+ N+DN+ + + + +D GL+ S+R +T+ST G VP I + EE V LA+SLH
Sbjct: 187 GSGEPMDNYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTLALSLH 246
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++++R L+P+ + Y L ++DAC +Y + RR+TFEY ++KG+ND+ +A L +
Sbjct: 247 APNDEVRKTLMPVAKSYALRDVLDACHYYFEKT-GRRLTFEYSLVKGVNDNLEEARALAE 305
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++K +NLIP NP +Y SD+K I F ++R G + +R G DI ACGQ
Sbjct: 306 LIKDQHGHVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDIDGACGQ 365
Query: 365 LKSLSKRIPKV 375
L+ +
Sbjct: 366 LRKSYIEKERT 376
>gi|229545365|ref|ZP_04434090.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
gi|307295833|ref|ZP_07575665.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
gi|229309472|gb|EEN75459.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
gi|306496164|gb|EFM65743.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
gi|315028571|gb|EFT40503.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000]
Length = 357
Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats.
Identities = 135/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R +++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|117926273|ref|YP_866890.1| radical SAM protein [Magnetococcus sp. MC-1]
gi|205829786|sp|A0LBZ1|RLMN_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|117610029|gb|ABK45484.1| 23S rRNA m(2)A-2503 methyltransferase [Magnetococcus sp. MC-1]
Length = 356
Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats.
Identities = 164/363 (45%), Positives = 223/363 (61%), Gaps = 23/363 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L G+ RE L +++ R Q+W W++V+ + MSD+S + R L+
Sbjct: 7 DLTGLTREALTSLVVEQ---LGEKPFRARQLWSWLHVKLAQHLDEMSDLSIDFRRKLSAL 63
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + PE+ +IS DGT KWLLR +IETVYIPE RGTLC+SSQVGC+L+
Sbjct: 64 STPLRPEVSTHQISRDGTEKWLLRLS-----DGQQIETVYIPEDERGTLCISSQVGCTLS 118
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC+TG Q RNLT EI+ QVL AR L + ++++NIV+MGM
Sbjct: 119 CPFCHTGAQGFARNLTPSEIVQQVLFARRTLA--------------ARDKRVTNIVLMGM 164
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N++ V+ ++ I D GL+F R++TLST+G +P + + G E+GV LAISLHAV
Sbjct: 165 GEPLYNYEAVRDAVLILLDDSGLAFGTRKVTLSTAGLLPKMEQAGRELGVNLAISLHAVR 224
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ LR+ LVP+N+KY L+ L A YP L + RR+T+EYVML G+NDS DA + LK
Sbjct: 225 DTLRDELVPLNKKYNLQALRAATLRYP-LKSGRRVTWEYVMLHGVNDSEDDARLFVSFLK 283
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
IP+KINLIPFNPWPG Y S I F + + ++G+ + IR RG DI AACGQLK
Sbjct: 284 DIPSKINLIPFNPWPGVPYQSSSMTRIAAFQKILYQAGFVTVIRDRRGEDIDAACGQLKG 343
Query: 368 LSK 370
+
Sbjct: 344 AVQ 346
>gi|332291134|ref|YP_004429743.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5]
gi|332169220|gb|AEE18475.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5]
Length = 346
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 202/365 (55%), Gaps = 24/365 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K + + +EEL + + G R +Q+++W++ +G DF M+++S++ R LL
Sbjct: 4 DKRDIRKLSKEELRDFFVSQG----DKPFRGNQVYEWLWQKGAHDFIDMTNLSKDTRILL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+++F I + + + S DGT K + + +E+V IP K+R T CVSSQVGC
Sbjct: 60 DENFVINHIRVDQMQRSSDGTIKNGVELH-----DGLMVESVLIPTKNRTTACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C FC T K +RNL +EI+ QV++ + +SNIV
Sbjct: 115 SLNCKFCATARLKRMRNLNPDEIVDQVVVIDR-------------QSRLYHDKPLSNIVF 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N++NV K++ +D GL S +RIT+STSG I ++ ++ LA+SL
Sbjct: 162 MGMGEPLMNYNNVIKAIDKITDPEGLGMSPKRITVSTSGVPKIIKKMADDDVKFNLAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ +++R ++P N + PL L +A ++ + RIT+EYV+ GIND D + L+
Sbjct: 222 HSALDNVRTEIMPFNEQMPLADLKEALIYWYEKTGK-RITYEYVVWDGINDRHIDIMALL 280
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K +P+K+N+I +NP ++ ++ + I + ++ +G + +R RG DI AACG
Sbjct: 281 DFCKAVPSKVNIIEYNPIDDGQFQQANPEAIDRYVSVLEANGVTVTVRRSRGKDIDAACG 340
Query: 364 QLKSL 368
QL +
Sbjct: 341 QLANK 345
>gi|315161444|gb|EFU05461.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
Length = 357
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 135/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMVAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|30248171|ref|NP_840241.1| hypothetical protein NE0145 [Nitrosomonas europaea ATCC 19718]
gi|30180056|emb|CAD84056.1| Conserved hypothetical protein 48 [Nitrosomonas europaea ATCC
19718]
Length = 361
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 151/352 (42%), Positives = 206/352 (58%), Gaps = 10/352 (2%)
Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
R Q+ +W++ G DF MSD+++ RH L + + PEIV + + DGTRKW
Sbjct: 2 GEKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRKW 61
Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
LL G +E V+IPE SRGTLCVSSQVGC+L CSFC TG Q RNL+ EI+
Sbjct: 62 LL-----STGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEII 116
Query: 149 LQVLLARSLL-----GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
Q+ A LL FP P R ++N+VMMGMGEPL NF+N+ +L +
Sbjct: 117 GQLWWANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDL 176
Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+ LVPIN+KYP+
Sbjct: 177 MLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPI 236
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
L+ AC Y + ITFEYVMLKG+NDS A L+++++ +P K+NLIPFN + G
Sbjct: 237 RDLLAACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRNVPCKLNLIPFNAFSG 296
Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
Y S + I F + + ++G + +R RG DI AACGQL + +
Sbjct: 297 SGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQLAGQVRDKTRR 348
>gi|150026118|ref|YP_001296944.1| hypothetical protein FP2080 [Flavobacterium psychrophilum JIP02/86]
gi|205829761|sp|A6H1B8|RLMN_FLAPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|149772659|emb|CAL44142.1| Protein of unknown function YloN [Flavobacterium psychrophilum
JIP02/86]
Length = 347
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 204/367 (55%), Gaps = 24/367 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ + + +++L + + + R +Q+++W++ +G F+ M+++S+ R +
Sbjct: 3 IEKKDIRALSKDQLRDFFV----INKDKAFRGNQVYEWLWSKGAHSFEDMTNVSKGTRQM 58
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++F I + ++ + S DGT K +R + +E+V IP ++R T CVSSQVG
Sbjct: 59 LVENFVINHIKVDTMQRSSDGTVKNAVRLH-----DGLIVESVLIPTETRTTACVSSQVG 113
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL C+FC T K +RNL EI QVL R +SNIV
Sbjct: 114 CSLDCNFCATARLKRMRNLEPGEIYDQVLAIDR-------------ESKLYFNRPLSNIV 160
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N++NV K++ + + S GL S +RIT+STSG I ++ ++ LA+S
Sbjct: 161 FMGMGEPLMNYNNVIKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAVS 220
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ ++RN ++P + +PL L +A +++ +IT+EYV+ KGIND+ L
Sbjct: 221 LHSAVEEIRNKIMPFTKSFPLPELREALQYWY-HKTKSKITYEYVVWKGINDNKESVDAL 279
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K K +P K+NLI +NP E+ + + I + + ++ +G + +R RG DI AAC
Sbjct: 280 VKFCKHVPCKVNLIEYNPIDDGEFQQASPESINAYIKALEANGIIAKVRHSRGKDIDAAC 339
Query: 363 GQLKSLS 369
GQL +
Sbjct: 340 GQLANKE 346
>gi|256762921|ref|ZP_05503501.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256684172|gb|EEU23867.1| conserved hypothetical protein [Enterococcus faecalis T3]
Length = 357
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 134/379 (35%), Positives = 216/379 (56%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVTSFSEMSNISKSLMIL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLAPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|125973091|ref|YP_001037001.1| radical SAM protein [Clostridium thermocellum ATCC 27405]
gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|205829739|sp|A3DCX9|RLMN_CLOTH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|125713316|gb|ABN51808.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium thermocellum
ATCC 27405]
gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
Length = 349
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 130/364 (35%), Positives = 205/364 (56%), Gaps = 30/364 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+ M EELE + ++G + R QI++W +GI+D M+++S+++R L
Sbjct: 4 KADLLSMTIEELENLMAEMG----EQKFRAKQIFQWT-NKGIKDIDAMTNLSKDLREKLK 58
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I E++ + +S DGT K+L + IE+V + + C+SSQVGC
Sbjct: 59 ERAYINRLEVIKKFVSKIDGTIKYLFKLN-----DGNIIESVLMQYLHGYSACISSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + VRNLT E+L Q+L ++ +I N+V+
Sbjct: 114 KMGCKFCASTGVGFVRNLTPGEMLDQILTIQN-----------------DTKNRIGNVVI 156
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG+GEPL N++NV K L + + G++ R I++ST G VP I R+ EE I V L+ISL
Sbjct: 157 MGIGEPLDNYENVVKFLRLVNHKDGINLGARHISVSTCGLVPEILRLAEEKIPVTLSISL 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++++R ++PIN++Y ++ +I+AC+ Y +N RITFEY M+ G+NDS +AL L
Sbjct: 217 HAPNDEIREKIMPINKRYSIDKIIEACKIYTETTNR-RITFEYAMIDGLNDSKENALELA 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K ++G+ +NLIP N + S ++ I F E ++R G + +R G DI AACG
Sbjct: 276 KRIRGMLCHVNLIPVNTVSDTGFKRSSREKITAFKEILERFGVETTVRRELGSDINAACG 335
Query: 364 QLKS 367
QL+
Sbjct: 336 QLRR 339
>gi|323143782|ref|ZP_08078450.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
12066]
gi|322416495|gb|EFY07161.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
12066]
Length = 357
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 151/375 (40%), Positives = 210/375 (56%), Gaps = 22/375 (5%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
+ +EL++ + +G R +Q KWIY G+ DF M++I +++R L + I
Sbjct: 2 NLGVDELKDFAVSLG----EKPFRATQFLKWIYQYGVTDFDLMTNIKKDLREKLKEIACI 57
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
PEIV E+ S DGT KW L G +ETV IPE+ R TLC+S+QVGC + C+F
Sbjct: 58 KAPEIVTEQRSSDGTVKWALDI-----GDGQLVETVLIPEEGRNTLCISTQVGCPVKCAF 112
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C TG RNL+ EI+ QV A S +G + ISN+VMMGMGEP
Sbjct: 113 CRTGASGFNRNLSVSEIIGQVWRAASRVG----------FSQNEEQKPISNVVMMGMGEP 162
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDL 250
L N D V K I + + SKRR+T+STSG P I ++ ++ V LA+SLHA +++L
Sbjct: 163 LYNVDAVLKVTEILLNDNAFALSKRRVTISTSGVAPIIDKIAGKVDVALALSLHAPNDEL 222
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKG 308
R++LVP+N+KY +++++ + R+Y SNA + T EYV+L INDS A L ++LK
Sbjct: 223 RDVLVPLNKKYKIDVVLKSVRNYLSKSNANCGKATIEYVLLDHINDSTDQAEELARLLKD 282
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
P KINLIPFNP E+ + F + + GY+ RT RG DI AACGQL
Sbjct: 283 TPCKINLIPFNPHEQSEFKRPSNSRVDRFYKVLTGHGYTVMTRTTRGDDIAAACGQLAGQ 342
Query: 369 SK-RIPKVPRQEMQI 382
K +I K I
Sbjct: 343 VKDKIAKNRITAANI 357
>gi|51245787|ref|YP_065671.1| hypothetical protein DP1935 [Desulfotalea psychrophila LSv54]
gi|81641926|sp|Q6ALW1|RLMN_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|50876824|emb|CAG36664.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 362
Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats.
Identities = 156/365 (42%), Positives = 217/365 (59%), Gaps = 17/365 (4%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K L + +++L E K+G P R QI W+Y +RDF+ M+D+++ R LL
Sbjct: 10 EKIDLKNLSQDQLVEFAEKLGQPA----FRGRQIMSWLYRPEVRDFEQMTDLAKVFRKLL 65
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ + + + + DG K+ R IETV IPE R TLC+SSQVGC
Sbjct: 66 AENSFFSHFDDPIIERAKDGCVKFGFRLH-----DGHVIETVLIPEPDRNTLCISSQVGC 120
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C+FC TG RNLT EI+ QV AR L + P + I +++N+V
Sbjct: 121 AMKCTFCMTGGMGFTRNLTPSEIVNQVCAARDFLANEPADKLIGPD-------RVTNVVY 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV S+SI ++ GL + RRIT+ST G V N+AR+G+E V LAISLH
Sbjct: 174 MGMGEPLNNLENVLTSISILTEQKGLDLTGRRITVSTCGIVANMARLGQEAPVNLAISLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + R++L+P+N +YPL+ L++ACR YP + RRI FEY+ML GINDS +A L +
Sbjct: 234 AVDDKTRDMLMPVNNRYPLDELLEACRTYP-MGKRRRIMFEYIMLAGINDSDTEARTLAR 292
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
L+ IP KINLIP+N PG Y K I++F ++ + YS IR RG DI AACGQ
Sbjct: 293 KLQEIPCKINLIPYNESPGLPYKSPGMKRILSFQNILREANYSVFIRNSRGEDIAAACGQ 352
Query: 365 LKSLS 369
L +
Sbjct: 353 LATDE 357
>gi|331269682|ref|YP_004396174.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
gi|329126232|gb|AEB76177.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
Length = 343
Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats.
Identities = 136/369 (36%), Positives = 204/369 (55%), Gaps = 29/369 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ EEL+ + + G + R QI++WIY + I +F M++IS+ + L
Sbjct: 2 KNILDFNLEELKNWMAENG----ESKFRAKQIFEWIYKKAIFNFDEMTNISKASKEKLKN 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I P I+++ S DGT K+L + IE+V + K ++CVS+Q+GC
Sbjct: 58 SFYIEIPNIMEKYKSNIDGTEKFLFEYK-----DGNIIESVVMRYKHGNSICVSTQIGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + +VRNLT+ EI Q+L A+ +G+ +ISN+V+M
Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIAAQILKAQQEIGE-----------------RISNVVLM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+DNV K + + +D L +R ITLST G VP I + +E + LAISLH
Sbjct: 156 GSGEPLDNYDNVLKFIKLINDDNALKIGQRHITLSTCGIVPKIKELADEKLQITLAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++D+R ++P+ KY + L+DAC++Y ++N RITFEY ++ GINDS ++A L
Sbjct: 216 APNDDIRKSMMPVANKYNINELLDACKYYSKITNR-RITFEYALVNGINDSAKNAEELFN 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
LKGI INLIP N +Y S KDI F + + G + IR G DI ACGQ
Sbjct: 275 QLKGILCHINLIPVNEIKENDYKRSGAKDIEEFKNILNKYGIETTIRREMGSDINGACGQ 334
Query: 365 LKSLSKRIP 373
L+ +
Sbjct: 335 LRRNYIKNN 343
>gi|197122634|ref|YP_002134585.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K]
gi|196172483|gb|ACG73456.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K]
Length = 372
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 19/378 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E L + +G R Q+++W+++RG + M+D+ + +R L +
Sbjct: 9 PDLRSLPQERLAALIAGLG----EKPFRARQVYRWLHLRGAASLEEMTDVPRALRERLAE 64
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ E E+ S DGT KW R G IE+VY+PE R TLCVS+QVGC++
Sbjct: 65 GTRLTTLERATEQRSADGTIKWTWRT-----GDGKLIESVYMPETDRKTLCVSTQVGCAV 119
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TGT L RNL EI+ QV A L + E R ++N+V MG
Sbjct: 120 GCTFCMTGTMGLARNLGPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ ++K +L + G +FS R +T+STSG VP + R+GEE V LA+SL+A
Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ R+ ++PINR+YPL L+ ACR +P + RRITFEYVML G+ND+P DA L ++L
Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAK+NLIP+N PG + + F + + ++ +R RG DI AACGQL
Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPAAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349
Query: 367 SLSKRIPKVPRQEMQITG 384
+ R +TG
Sbjct: 350 AEGGPGDPRRRAGAPLTG 367
>gi|298208115|ref|YP_003716294.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus
HTCC2559]
gi|83848036|gb|EAP85906.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus
HTCC2559]
Length = 346
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 198/366 (54%), Gaps = 24/366 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+ + + +E+L + + G R +Q+++W++ +G F+ M++IS+E R +L
Sbjct: 4 SKKDIRALSKEQLRDFFVSEG----DKAFRGNQVYEWLWNKGAHTFEEMTNISKETRDML 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F I + + + S DGT K ++ + +E+V IP SR T CVSSQVGC
Sbjct: 60 EANFVINHILVDQMQRSSDGTIKNAVKLH-----DGLTVESVLIPTASRTTACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C FC T K +RNL +EI QV+ R +SNIV
Sbjct: 115 SLDCKFCATSRLKRMRNLNPDEIYDQVVAIDR-------------ESRLYHDRPLSNIVF 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N++NV KS+ + GL S RRIT+STSG I ++ +E LA+SL
Sbjct: 162 MGMGEPLMNYNNVLKSIEKITSEDGLGMSPRRITVSTSGVPKIIKKMADEEVKFNLAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ +++R ++P N +PL+ L ++ ++ + + IT+EYV+ K IND D L+
Sbjct: 222 HSAIDEVRTKIMPFNEHFPLKDLRESLEYWYAKTGKQ-ITYEYVVWKDINDRTEDIDALV 280
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K K +P+K+NLI +NP E+ + I + ++R+ + +R RG DI AACG
Sbjct: 281 KFCKYVPSKVNLIEYNPIDDGEFQQAPDAAINAYVNALERNNITVTVRRSRGKDIDAACG 340
Query: 364 QLKSLS 369
QL + S
Sbjct: 341 QLANKS 346
>gi|197302405|ref|ZP_03167461.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC
29176]
gi|197298526|gb|EDY33070.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC
29176]
Length = 351
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 114/370 (30%), Positives = 199/370 (53%), Gaps = 29/370 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + + L+E + +G R Q+++W++V+ DF M+++S+ +R L
Sbjct: 2 KKDIRAYGYDRLKEEMEALG----EKPFRAKQVYEWLHVKLADDFDEMTNLSKALREKLK 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + I+ ++++ +IS DGT K+L + +E+V + K ++C+SSQ GC
Sbjct: 58 EEYVILPVKMLERQISQIDGTNKFLFQLY-----DGNVVESVLMRYKHGNSVCISSQAGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL++ E+L Q+ + + ++SN+V+
Sbjct: 113 RMGCAFCASTIGGLQRNLSSSEMLGQIYQIQKI-----------------TQERVSNVVV 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEPL N++N + + +D GL+ S+R +T+ST G VP I + +E + LA+SL
Sbjct: 156 MGTGEPLDNYENFLNFVHLLTDEHGLNISQRNVTVSTCGIVPKILELAKEHLQITLALSL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H + + R L+P+ KY L ++DAC Y + RR+TFEY ++ G+ND+ DA L
Sbjct: 216 HGSTQEKRKRLMPVANKYHLPEVLDACDTYFRET-GRRVTFEYSLVHGVNDTEEDARELT 274
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LK +NLIP NP +++ +K+ + F +++SG + IR G DI ACG
Sbjct: 275 ALLKPRNCHLNLIPVNPVRERDFVRPSRKNALNFKNKLEKSGINVTIRREMGSDIDGACG 334
Query: 364 QLKSLSKRIP 373
QL+ +
Sbjct: 335 QLRRSYVKAD 344
>gi|207723161|ref|YP_002253560.1| hypothetical protein 48 [Ralstonia solanacearum MolK2]
gi|206588355|emb|CAQ35318.1| conserved hypothetical protein 48 [Ralstonia solanacearum MolK2]
Length = 396
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 133/384 (34%), Positives = 194/384 (50%), Gaps = 17/384 (4%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ +
Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +I P ++ + +S DGTRKWL+ G +ETVYIPE++RGTLCVSS
Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLVDV-----GAGNAVETVYIPEETRGTLCVSS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C FC TG Q RNL+ EI+ Q+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWXXXXXXXXXXXXXXXXXXXXXXXXXXXX 169
Query: 181 NIVMMGMGEPLCNFDNVKK------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++ + D S+RR+TLSTSG VP + R+ +
Sbjct: 170 XXXXXXXXXXXXXXXXXXXXXXXVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRD 229
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ V LA+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND
Sbjct: 230 LPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVND 289
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
S A L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR R
Sbjct: 290 SIEHARELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTR 349
Query: 355 GLDILAACGQLKSLSKRIPKVPRQ 378
G DI AACGQL K ++ +
Sbjct: 350 GDDIDAACGQLAGEVKDRTRLAER 373
>gi|120434720|ref|YP_860407.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803]
gi|205829770|sp|A0LY94|RLMN_GRAFK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|117576870|emb|CAL65339.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803]
Length = 352
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 202/365 (55%), Gaps = 24/365 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + + +E+L++ + G R +Q+++W++ + F M++IS+E R +L
Sbjct: 10 KKDIRALTKEQLQKFFVAEG----DKSFRGTQVYEWLWSKAAHSFDDMTNISKETRQMLK 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I + + + S DGT K ++ +E+V IP KSR T CVSSQVGCS
Sbjct: 66 DNFVINHIRVDRMQRSSDGTIKNAVKLHDAL-----TVESVLIPTKSRTTACVSSQVGCS 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T K +RNL +EI QV+ + R +SNIV M
Sbjct: 121 LDCQFCATAKLKRMRNLNPDEIYDQVVAI-------------DNESRLYFDRPLSNIVFM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N++NV K++ + GL S +RIT+STSG I ++ ++ + LA+SLH
Sbjct: 168 GMGEPLMNYNNVMKAVEKITSPEGLGMSPKRITISTSGVPKMIKKLADDEAKIKLAVSLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ N++R ++P N +PLE L +A ++ + + RIT+EY++ K IND+ DA L++
Sbjct: 228 SARNEVRTQIMPFNETFPLEDLREALEYWYSKTTS-RITYEYIVWKDINDTREDAQALVR 286
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K +P K+NLI +NP + + + + + ++R+G + +R RG DI AACGQ
Sbjct: 287 FCKYVPCKVNLIEYNPIDDGNFQQAAIEATNMYQDMLERNGITVTVRRSRGKDIDAACGQ 346
Query: 365 LKSLS 369
L + S
Sbjct: 347 LANKS 351
>gi|15924208|ref|NP_371742.1| radical SAM family protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926801|ref|NP_374334.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus N315]
gi|49483381|ref|YP_040605.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MRSA252]
gi|57651787|ref|YP_186093.1| hypothetical protein SACOL1230 [Staphylococcus aureus subsp. aureus
COL]
gi|87160347|ref|YP_493808.1| hypothetical protein SAUSA300_1111 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194924|ref|YP_499724.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|148267709|ref|YP_001246652.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus JH9]
gi|150393767|ref|YP_001316442.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus JH1]
gi|151221340|ref|YP_001332162.1| hypothetical protein NWMN_1128 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979539|ref|YP_001441798.1| hypothetical protein SAHV_1208 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509390|ref|YP_001575049.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221142008|ref|ZP_03566501.1| hypothetical protein SauraJ_10305 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315576|ref|ZP_04838789.1| hypothetical protein SauraC_05407 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731835|ref|ZP_04866000.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733544|ref|ZP_04867709.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006005|ref|ZP_05144606.2| hypothetical protein SauraM_06030 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425271|ref|ZP_05601696.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427931|ref|ZP_05604329.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430564|ref|ZP_05606946.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus 68-397]
gi|257433325|ref|ZP_05609683.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus E1410]
gi|257436167|ref|ZP_05612214.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
M876]
gi|257795726|ref|ZP_05644705.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781]
gi|258415950|ref|ZP_05682220.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus
A9763]
gi|258419697|ref|ZP_05682664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719]
gi|258423739|ref|ZP_05686625.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635]
gi|258438739|ref|ZP_05689892.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A9299]
gi|258444555|ref|ZP_05692884.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A8115]
gi|258447612|ref|ZP_05695756.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300]
gi|258449454|ref|ZP_05697557.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224]
gi|258452515|ref|ZP_05700521.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A5948]
gi|258454833|ref|ZP_05702797.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A5937]
gi|262051850|ref|ZP_06024066.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3]
gi|269202833|ref|YP_003282102.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus
ED98]
gi|282892704|ref|ZP_06300939.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117]
gi|282903771|ref|ZP_06311659.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
C160]
gi|282905535|ref|ZP_06313390.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908511|ref|ZP_06316341.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282910790|ref|ZP_06318593.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282913993|ref|ZP_06321780.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
M899]
gi|282916467|ref|ZP_06324229.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282918915|ref|ZP_06326650.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282920000|ref|ZP_06327729.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765]
gi|282924038|ref|ZP_06331714.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
C101]
gi|282927558|ref|ZP_06335174.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102]
gi|283770279|ref|ZP_06343171.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus H19]
gi|283957959|ref|ZP_06375410.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284024142|ref|ZP_06378540.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus 132]
gi|293501026|ref|ZP_06666877.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
58-424]
gi|293509985|ref|ZP_06668693.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
M809]
gi|293526573|ref|ZP_06671258.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
M1015]
gi|294848211|ref|ZP_06788958.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754]
gi|295407156|ref|ZP_06816957.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus
aureus A8819]
gi|295427703|ref|ZP_06820335.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296275239|ref|ZP_06857746.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MR1]
gi|297245958|ref|ZP_06929817.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796]
gi|297591338|ref|ZP_06949976.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
MN8]
gi|304381219|ref|ZP_07363872.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|81651279|sp|Q6GHL7|RLMN_STAAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81694662|sp|Q5HGL4|RLMN_STAAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81705804|sp|Q7A600|RLMN_STAAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81781713|sp|Q99UQ0|RLMN_STAAM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123098046|sp|Q2FZ66|RLMN_STAA8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123763308|sp|Q2FHM0|RLMN_STAA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829891|sp|A7X1H8|RLMN_STAA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829892|sp|A6U137|RLMN_STAA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829893|sp|A5ISA3|RLMN_STAA9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829894|sp|A6QGB8|RLMN_STAAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829895|sp|A8Z3Q4|RLMN_STAAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|13701018|dbj|BAB42313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246988|dbj|BAB57380.1| similar to Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus Mu50]
gi|49241510|emb|CAG40196.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|57285973|gb|AAW38067.1| conserved hypothetical protein TIGR00048 [Staphylococcus aureus
subsp. aureus COL]
gi|87126321|gb|ABD20835.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202482|gb|ABD30292.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740778|gb|ABQ49076.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
JH9]
gi|149946219|gb|ABR52155.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
JH1]
gi|150374140|dbj|BAF67400.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721674|dbj|BAF78091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368199|gb|ABX29170.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253724434|gb|EES93163.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728598|gb|EES97327.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271728|gb|EEV03866.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274772|gb|EEV06259.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278692|gb|EEV09311.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus 68-397]
gi|257281418|gb|EEV11555.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus E1410]
gi|257284449|gb|EEV14569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
M876]
gi|257789698|gb|EEV28038.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781]
gi|257839286|gb|EEV63760.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus
A9763]
gi|257844282|gb|EEV68664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719]
gi|257845971|gb|EEV69999.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635]
gi|257847998|gb|EEV71991.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A9299]
gi|257850048|gb|EEV74001.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A8115]
gi|257853803|gb|EEV76762.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300]
gi|257857442|gb|EEV80340.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224]
gi|257859733|gb|EEV82575.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A5948]
gi|257863216|gb|EEV85980.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A5937]
gi|259160251|gb|EEW45279.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3]
gi|262075123|gb|ACY11096.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus
ED98]
gi|269940710|emb|CBI49091.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus TW20]
gi|282314010|gb|EFB44402.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
C101]
gi|282316725|gb|EFB47099.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282319907|gb|EFB50255.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282322061|gb|EFB52385.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
M899]
gi|282325395|gb|EFB55704.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282327573|gb|EFB57856.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282330827|gb|EFB60341.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590561|gb|EFB95638.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102]
gi|282594716|gb|EFB99700.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765]
gi|282595389|gb|EFC00353.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
C160]
gi|282764701|gb|EFC04826.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117]
gi|283460426|gb|EFC07516.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus H19]
gi|283470430|emb|CAQ49641.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
ST398]
gi|283790108|gb|EFC28925.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285816900|gb|ADC37387.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus 04-02981]
gi|290920645|gb|EFD97708.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
M1015]
gi|291096031|gb|EFE26292.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
58-424]
gi|291466929|gb|EFF09447.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
M809]
gi|294825011|gb|EFG41433.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754]
gi|294968009|gb|EFG44037.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus
aureus A8819]
gi|295128061|gb|EFG57695.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297177122|gb|EFH36376.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796]
gi|297576224|gb|EFH94940.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
MN8]
gi|298694511|gb|ADI97733.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|302332822|gb|ADL23015.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302751041|gb|ADL65218.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340202|gb|EFM06143.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|312438405|gb|ADQ77476.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
TCH60]
gi|312829612|emb|CBX34454.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315131009|gb|EFT86993.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS03]
gi|315194104|gb|EFU24497.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS00]
gi|315198455|gb|EFU28784.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140967|gb|EFW32814.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320144318|gb|EFW36084.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323442309|gb|EGA99939.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus O46]
gi|329313887|gb|AEB88300.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus T0131]
gi|329724771|gb|EGG61276.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21189]
gi|329727514|gb|EGG63970.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21172]
gi|329728784|gb|EGG65205.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21193]
Length = 364
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL
Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|323701797|ref|ZP_08113468.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM
574]
gi|323533333|gb|EGB23201.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM
574]
Length = 352
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 131/372 (35%), Positives = 199/372 (53%), Gaps = 29/372 (7%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N K +L + E++ + ++G R QI +W+ +G+ F M++IS+E++
Sbjct: 4 NTKSKLNLRDLTLSEMKRLMTELG----EKPFRAIQICQWVLAKGVTSFDQMTNISKELQ 59
Query: 62 HLLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L I +++ + S T K+LL +E V + + CVS+
Sbjct: 60 AKLADVAYISQTKMLARQQSARGDTIKYLLGL-----ADGHAVECVLMKHSYGNSACVST 114
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC + + LVR+LT EI QVL + G ++S
Sbjct: 115 QVGCRMGCMFCASTIEGLVRSLTPGEIYDQVLGIQQ-----------------DTGERVS 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
+IV+MG GEPL N+DNV K L + GL+ R ITLST G VP + ++ +++ + L
Sbjct: 158 HIVIMGSGEPLDNYDNVIKFLENVNADYGLNIGYRHITLSTCGLVPKLKQLAFKKLPITL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA +++LRN LVPINR+Y L LI ACR Y ++ RRITFEY +LK INDS A
Sbjct: 218 AVSLHAPNDELRNQLVPINRRYSLAELIPACREYTEIT-GRRITFEYALLKEINDSEEHA 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ +LKG+ +NLIP NP + + + + F I+++G + +R G DI
Sbjct: 277 RQLVNLLKGMLCHVNLIPANPVEEKGFERTPPEKVERFRNIIEKAGLAVTVRRELGTDID 336
Query: 360 AACGQLKSLSKR 371
AACGQL+ ++
Sbjct: 337 AACGQLRRRFQK 348
>gi|222153431|ref|YP_002562608.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
uberis 0140J]
gi|254807218|sp|B9DUW7|RLMN_STRU0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|222114244|emb|CAR42840.1| radical SAM superfamily protein [Streptococcus uberis 0140J]
Length = 361
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 130/375 (34%), Positives = 207/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL L+ G + R +QIW W+Y + ++ F+ M++IS++ LLN
Sbjct: 2 KPSIYSLTRDELIAWALENG----QKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EHFCVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKKDRQK 354
>gi|188590485|ref|YP_001920564.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str.
Alaska E43]
gi|251777897|ref|ZP_04820817.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|205829736|sp|B2V4B5|RLMN_CLOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|188500766|gb|ACD53902.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str.
Alaska E43]
gi|243082212|gb|EES48102.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 347
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 30/372 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ EEL + + R QI WIY + +R+F M ++ + + L +
Sbjct: 2 KNILDYTLEELTLWMKEN----NESSFRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEE 56
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I PEI + S DGT K+L +F IE+V + K ++C+S+Q+GC
Sbjct: 57 NFEISLPEIEEIYKSELDGTEKFLFKFS-----DGNLIESVLMRYKHGNSICISTQIGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + +RNLT EIL Q+L+ ++ +G+ +ISN+V+M
Sbjct: 112 MGCKFCASTIDGRIRNLTTGEILSQILVVQNYIGE-----------------RISNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
G GEPL N++NV K L + S GL+ +R ITLST G VP I + + E+ + LAISLH
Sbjct: 155 GSGEPLDNYENVMKFLEVVSAEYGLNIGQRHITLSTCGIVPKIYELADKELSITLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A S++ R ++PI KY ++ +++AC+++ + RITFEY ++K +NDS DA L K
Sbjct: 215 AFSDEKRKEIMPIANKYSIDEILNACKYFINKTKR-RITFEYSLVKDVNDSKEDARALGK 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +NLIP N + S ++ I F+ + G +R G DI AACGQ
Sbjct: 274 LLKGMLCHVNLIPVNEIKERTFKRSSKETIQDFANILSNLGIEVTVRREMGSDINAACGQ 333
Query: 365 LKSLSKRIPKVP 376
L+ + +
Sbjct: 334 LRRSYIKTQETR 345
>gi|305664559|ref|YP_003860846.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170]
gi|88708576|gb|EAR00812.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170]
Length = 348
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 129/367 (35%), Positives = 204/367 (55%), Gaps = 24/367 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+KK+ + + ++L E + G R +Q+++W++ + F+ M++IS+E R L
Sbjct: 5 IKKKDIRALTLDQLREFFVANG----DKAFRGNQVYEWLWKKSAYSFEVMTNISKETRTL 60
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F I + ++ + S DGT K +R + +E+V IP K+R T CVSSQVG
Sbjct: 61 LTSNFVINHIKVDQMQRSKDGTIKNAVRLH-----DDLVVESVLIPTKTRTTACVSSQVG 115
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL C FC T K +RNL +EI QV+ + R +SNIV
Sbjct: 116 CSLDCKFCATARLKRMRNLNPDEIFDQVVAI-------------DNESRLYFNRPLSNIV 162
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N++NV K++ + GL S +RIT+STSG I ++ +E LA+S
Sbjct: 163 FMGMGEPLMNYNNVLKAIDKITSPDGLGMSPKRITVSTSGVPKMIRKMADEQVKFKLAVS 222
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ +++R ++P N L L +A +++ + + RIT+EYV+ KGIND+ DA L
Sbjct: 223 LHSAIDEIRTSIMPFNATLTLADLREALQYWYSKTKS-RITYEYVVWKGINDTLNDAEAL 281
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ + P+K+NLI +NP ++ ++ K I + + ++R G + +R RG DI AAC
Sbjct: 282 VDFCRFAPSKVNLIEYNPIDDGDFQQANNKAIDMYVDTLERRGITVTVRRSRGKDIDAAC 341
Query: 363 GQLKSLS 369
GQL + S
Sbjct: 342 GQLANKS 348
>gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
sp. X514]
gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|320116142|ref|YP_004186301.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|205829918|sp|B0KA06|RLMN_THEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829919|sp|B0K1Y9|RLMN_THEPX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514]
gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 342
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 139/368 (37%), Positives = 200/368 (54%), Gaps = 30/368 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L M EE+EE + IG R R QI+KWIY + + DF M+DIS+ +R L +
Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEI 58
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +I + ++S D T K+L IE V I + T CVS+QVGC++
Sbjct: 59 AYVSQLKIEERRVSEIDDTVKYLFLLE-----DGNIIEGVAIKYRFGNTACVSTQVGCNM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC + VR+L A E++ QV+ S G KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N+D V K + I ++ GL R IT+ST G VP I + +E V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVDKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ INLIP N + ++ + ++ F I+ +G S +R G DI AACGQL
Sbjct: 275 LKGMLCHINLIPINYVREIGFKKANNEKVMMFKRIIEDAGISCTVRRELGSDIEAACGQL 334
Query: 366 KSLSKRIP 373
+ +
Sbjct: 335 RRKYLKER 342
>gi|167760434|ref|ZP_02432561.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704]
gi|167661933|gb|EDS06063.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704]
Length = 357
Score = 350 bits (897), Expect = 2e-94, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 201/369 (54%), Gaps = 29/369 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ K+ + EEL+E + +IG R++QI++W++V+ F M+++S+E+R
Sbjct: 1 MMSKKDICSYSFEELKEEIARIG----EKDFRSTQIYEWLHVKLAESFDEMTNLSKELRE 56
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + + I +++D +IS D T K+L IE+V + ++C+SSQ
Sbjct: 57 KLKEEYEIAKVKMIDHQISKVDPTEKFLFELC-----DGNMIESVLMKYNYGNSVCISSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C FC + L R+L E+L Q+ + + G ++SN
Sbjct: 112 AGCRMGCRFCASTIGGLERSLAPSEMLRQIYQIQKM-----------------TGERVSN 154
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+V+MG GEPL N+DN K + I SD GL S+R IT ST G VPN+ R+ +E + LA
Sbjct: 155 VVVMGTGEPLDNYDNFVKFIHILSDEHGLHISQRNITASTCGIVPNMKRLADEGLQITLA 214
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH + + R L+P+ +Y L ++DAC +Y + RRITFEY +++G+ND DA
Sbjct: 215 LSLHGSTQEKRKRLMPVADRYELPEVLDACDYYFEKT-GRRITFEYSLVEGVNDQMEDAR 273
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI IL+ +NLIP NP ++ D+K+ + F ++++G + IR RG DI
Sbjct: 274 ELISILRKRNCHLNLIPVNPIKERDFKKPDRKNALEFKNKLEKNGINVTIRRERGSDIDG 333
Query: 361 ACGQLKSLS 369
ACGQL+
Sbjct: 334 ACGQLRRRH 342
>gi|163815234|ref|ZP_02206611.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759]
gi|158449429|gb|EDP26424.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759]
Length = 374
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 126/367 (34%), Positives = 200/367 (54%), Gaps = 30/367 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L M +EL++ + +G P R QI++W +V+ + M+++ + +R L++
Sbjct: 28 KCDLKSMSIDELKDWVQGVGQPA----FRAKQIYQWFHVKLAGSIEEMTNLPKSLRELMD 83
Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I +V S + T K+L R IE+V + K ++C+SSQVGC
Sbjct: 84 EQ-KIYGVNVVTRLESKEDGTNKFLFRLH-----DGNVIESVLMRYKHGNSVCISSQVGC 137
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + LVRNLTA E+L Q+ + + G +ISN+V+
Sbjct: 138 RMGCRFCASTIGGLVRNLTASEMLSQIYEIQKI-----------------SGERISNVVV 180
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG GEPL NFDN+ + + + +D GL+ S+R IT+S+ G VP I R+ + ++ + A+SL
Sbjct: 181 MGTGEPLDNFDNLVRFIKMLTDENGLNISQRNITVSSCGLVPEIKRLADLDLTITFALSL 240
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ R L+PI +Y +E ++DACR+Y + RRITFEY ++KG NDSP A L
Sbjct: 241 HAPNDADRRELMPIANRYSIEEVLDACRYYFDKT-GRRITFEYSLVKGQNDSPEKARELA 299
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP NP + +D I F + ++ + +R G DI AACG
Sbjct: 300 ALIKGMNCHVNLIPVNPIKERSFERADNTSIENFRKVLESRQITVTVRRSMGRDIDAACG 359
Query: 364 QLKSLSK 370
QL+ +
Sbjct: 360 QLRRKYE 366
>gi|21282830|ref|NP_645918.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MW2]
gi|49486057|ref|YP_043278.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MSSA476]
gi|300912218|ref|ZP_07129661.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
TCH70]
gi|81649432|sp|Q6G9Z5|RLMN_STAAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81762575|sp|Q8NX16|RLMN_STAAW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|21204269|dbj|BAB94966.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244500|emb|CAG42929.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|300886464|gb|EFK81666.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
TCH70]
Length = 364
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL
Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLYELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|152989809|ref|YP_001355531.1| hypothetical protein NIS_0057 [Nitratiruptor sp. SB155-2]
gi|205829830|sp|A6Q115|RLMN_NITSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|151421670|dbj|BAF69174.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 355
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 148/372 (39%), Positives = 220/372 (59%), Gaps = 32/372 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ + +EEL++ + + R +QI++WIY +G +DF+ MS++ + +R L +
Sbjct: 2 KNILDLTKEELQQEVT--------PKFRANQIYQWIYQKGAKDFESMSNLPKSMREELKE 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
F+I P+I++ ++S DG++K+LL V + I +++R T+CV
Sbjct: 54 KFTITPPKILNVEVSKDGSKKYLLGLQDGHTVESVLLPMKKEERDEKGNILKEARYTVCV 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + C FC T VRNLT EI+ QVL R R+
Sbjct: 114 SSQVGCKVGCEFCLTAKGGFVRNLTPGEIVEQVLTIRED-------------NNIPANRR 160
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
+ NIV MGMGEPL N +NV K++ I SD G+S S RR T+STSG P I ++GE GV
Sbjct: 161 V-NIVYMGMGEPLDNLENVAKAVKIFSDEHGMSISPRRQTISTSGLAPKIKKLGEMNLGV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+LAISLHAV ++LR L+PIN+ Y +E +I A + +P + +R+ FEY+M+K +ND +
Sbjct: 220 LLAISLHAVDDELRQKLMPINKAYNIESVIQAVKEFP-IDQRKRVMFEYLMIKNLNDDLK 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A L+K+L GI AK+NLI FNP+PG + + KD+ F + + G IR +GLD
Sbjct: 279 AAKKLVKLLHGIKAKVNLIYFNPYPGSPFQRPEPKDVEAFQKYLLDHGVLCTIRESKGLD 338
Query: 358 ILAACGQLKSLS 369
I AACGQLK S
Sbjct: 339 ISAACGQLKEKS 350
>gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
Length = 355
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 130/374 (34%), Positives = 217/374 (58%), Gaps = 26/374 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++
Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L++HF I + + + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LSEHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S++V
Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+DNV L I +D+ GL+ R IT+STSG I V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L++A Y +N RITFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278
Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+LK A +NLIP+NP + Y + D++ F + +K++G + IR G DI
Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRCPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIP 373
AACGQL+S +
Sbjct: 339 AACGQLRSKQMKKT 352
>gi|82750822|ref|YP_416563.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus RF122]
gi|123768547|sp|Q2YXJ8|RLMN_STAAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|82656353|emb|CAI80771.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 364
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL
Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMGFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
Length = 366
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 129/380 (33%), Positives = 215/380 (56%), Gaps = 26/380 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 9 KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + + DGT K+L P + IETV + + ++CV+SQVGC+
Sbjct: 65 ENFCVNPLKQRIVQEASDGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTSQVGCN 119
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC +G K R+LT+ EI Q+++ + + ++S++V+M
Sbjct: 120 MGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+DNV + + ++ GL+ R IT+STSG I E V LA+SLH
Sbjct: 168 GIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVSLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDSP +A L
Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNDVNDSPENAQELAD 286
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+S + + + + +
Sbjct: 347 CGQLRSNTMKRDRQKAAKAK 366
>gi|297208138|ref|ZP_06924569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|296887381|gb|EFH26283.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
ATCC 51811]
Length = 364
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 126/370 (34%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL
Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +GLDI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGLDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL++ +++
Sbjct: 353 QLRAKERQVE 362
>gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
Length = 342
Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats.
Identities = 138/368 (37%), Positives = 199/368 (54%), Gaps = 30/368 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L +
Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I +I ++S D T K+L IE V I + T C+S+QVGC++
Sbjct: 59 AYISQLKIEARRVSEVDDTVKYLFLLE-----DNNIIEGVAIKYRFGNTACISTQVGCNM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC + VR+L A E++ QV+ G KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVIAIDGDYG------------------KISNIVLMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N+D V K + I ++ GL R IT+ST G VP I + +E V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N + ++ + ++ F + I+ +G S +R G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334
Query: 366 KSLSKRIP 373
+ +
Sbjct: 335 RRKYLKER 342
>gi|86158056|ref|YP_464841.1| hypothetical protein Adeh_1631 [Anaeromyxobacter dehalogenans
2CP-C]
gi|123750314|sp|Q2IIC5|RLMN_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|85774567|gb|ABC81404.1| 23S rRNA m(2)A-2503 methyltransferase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 372
Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats.
Identities = 146/378 (38%), Positives = 213/378 (56%), Gaps = 19/378 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E L + +G R Q+++W+++RG + M+D+ + +R L +
Sbjct: 9 PDLRSLPQERLASLIAGLG----EKPFRARQVYRWLHLRGAASLEEMTDVPRALRERLAE 64
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ E E+ S DGT KW R +E+VY+PE R TLCVS+QVGC++
Sbjct: 65 GTRLTTLERATEQRSADGTIKWTWRTR-----DGKLVESVYLPETDRKTLCVSTQVGCAV 119
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TGT L RNL EI+ QV A L + E R ++N+V MG
Sbjct: 120 GCTFCMTGTMGLARNLEPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ ++K +L + G +FS R +T+STSG VP + R+GEE V LA+SL+A
Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ R+ ++PINR+YPL L+ ACR +P + RRITFEYVML G+ND+P DA L ++L
Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAK+NLIP+N PG + + F + + ++ +R RG DI AACGQL
Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPGAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349
Query: 367 SLSKRIPKVPRQEMQITG 384
+ R +TG
Sbjct: 350 AEGGPGDPRRRAAAALTG 367
>gi|317485889|ref|ZP_07944749.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
gi|316922863|gb|EFV44089.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
Length = 404
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 136/373 (36%), Positives = 200/373 (53%), Gaps = 17/373 (4%)
Query: 2 NFLKKESLIGMMREELEEA-LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
N + ++ + ELE + +G P + R +Q+W+WI+ + F M+D+S+++
Sbjct: 44 NATRMIDILNLTFPELERFIVEDLGQP----KFRAAQVWQWIWQKHATSFDAMTDVSKQL 99
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I+ PEIV + S DGT K LLR + V + + R CVSS
Sbjct: 100 RAKLAEVAEIVLPEIVTVQTSSDGTEKLLLRLRDGALVETVILPSTGQDGSVRIAQCVSS 159
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q+GC++ C+FC TGT +RN+TA EIL QVL+AR LGD I I
Sbjct: 160 QIGCAMGCTFCSTGTMGFIRNMTAGEILSQVLVARMRLGDNRIDHPI-----------IR 208
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V MGMGEPL N ++L + + G+ FS RRIT+ST G + +G+ LA
Sbjct: 209 NLVFMGMGEPLLNLRETTRALEMLNHDKGMDFSPRRITVSTCGIKAGLRELGDSGLAFLA 268
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + DLR ++P + L+ L+ YP L ITFEY++L G+ND P A
Sbjct: 269 VSLHAPNQDLRAKIMPKAANWHLDDLMATLESYP-LKTREHITFEYLLLGGVNDQPEHAR 327
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K++ + K+NLI +NP Y + DI+ F + + G ++ +R +G DI A
Sbjct: 328 ELAKLVSRVKGKLNLIAYNPSETQLYKAPTEADILAFEKILWSKGVTAILRKSKGQDIKA 387
Query: 361 ACGQLKSLSKRIP 373
ACGQLKS +R
Sbjct: 388 ACGQLKSDWEREK 400
>gi|154505950|ref|ZP_02042688.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149]
gi|153793968|gb|EDN76388.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149]
Length = 346
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 116/370 (31%), Positives = 196/370 (52%), Gaps = 29/370 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + E+L + +IG + R QI++W++V+ F+ M+++S+ +R L
Sbjct: 2 KKDIRAYTYEQLAAEMEQIG----EKKFRAKQIYEWLHVKLADSFEEMTNLSKALREKLE 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I+ ++++ +IS D T K+L + +E+V + K ++C+SSQVGC
Sbjct: 58 AEYEILPVKMLERQISKIDATNKFLFQLS-----DGNVVESVLMRYKHGNSVCISSQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + L RNL+ E+L Q+ + + G ++SN+V+
Sbjct: 113 RMGCRFCASTIGGLERNLSPSEMLGQIYQIQKI-----------------TGERVSNVVV 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEP+ N++N + + +D GL S+R +T+ST G VP I + E + LA+SL
Sbjct: 156 MGTGEPMDNYENFLTFVRMLTDEHGLHISQRNLTVSTCGIVPKIRELAMEHLQITLALSL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H + + R L+P+ KY L+ ++ AC Y + RR+TFEY ++ G+ND+ DA LI
Sbjct: 216 HGSTQEKRKQLMPVANKYDLQEVLKACDFYFQET-GRRVTFEYSLVHGVNDTQEDAEELI 274
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
ILK +NLIP NP ++ +K+ + F +++SG + IR G DI ACG
Sbjct: 275 GILKSRNCHLNLIPVNPIKERDFQQPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334
Query: 364 QLKSLSKRIP 373
QL+ +
Sbjct: 335 QLRRRYVKTE 344
>gi|187932932|ref|YP_001885417.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund
17B]
gi|205829737|sp|B2THS9|RLMN_CLOBB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|187721085|gb|ACD22306.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund
17B]
Length = 347
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 129/372 (34%), Positives = 201/372 (54%), Gaps = 30/372 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ EEL + + R QI WIY + +R+F M ++ + + L +
Sbjct: 2 KNILDYTLEELTLWMKEN----NESSFRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEE 56
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I PEI + S DGT K+L +F IE+V + K ++C+S+QVGC
Sbjct: 57 NFEIALPEIEEIYKSELDGTEKFLFKFS-----DGNLIESVLMRYKHGNSICISTQVGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + +RNLT EIL Q+L+ ++ +G+ +ISN+V+M
Sbjct: 112 MGCKFCASTIDGRIRNLTTGEILAQILVVQNHIGE-----------------RISNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
G GEPL N++NV K L I S GL+ +R ITLST G VP I + + E+ + LAISLH
Sbjct: 155 GSGEPLDNYENVMKFLDIVSAEYGLNIGQRHITLSTCGIVPKIYELADKELSITLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A S++ R ++PI KY ++ +++AC+++ + RITFEY ++K +NDS DA L K
Sbjct: 215 AFSDEKRKEIMPIANKYSIDEILNACKYFVNKTKR-RITFEYSLVKDVNDSKEDARALGK 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +NLIP N + S ++ I F+ + G +R G DI AACGQ
Sbjct: 274 LLKGMLCHVNLIPVNEIKERTFKRSSKETIQDFANILSNLGIEVTVRREMGSDINAACGQ 333
Query: 365 LKSLSKRIPKVP 376
L+ + +
Sbjct: 334 LRRSYIKTQETR 345
>gi|146283364|ref|YP_001173517.1| radical SAM protein [Pseudomonas stutzeri A1501]
gi|145571569|gb|ABP80675.1| radical SAM enzyme, Cfr family [Pseudomonas stutzeri A1501]
Length = 347
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 159/342 (46%), Positives = 205/342 (59%), Gaps = 17/342 (4%)
Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG 98
KWI+ G+ DF MS++ + +R L I PEIV E IS DGTRKW++R +
Sbjct: 1 MKWIHHFGVDDFDAMSNLGKALREKLKACAEIRGPEIVSEDISSDGTRKWVVRVASGSC- 59
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
+ETVYIP+ RGTLCVSSQ GC+L CSFC TG Q NLTA E++ QV +A
Sbjct: 60 ----VETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSF 115
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
G P D R I+N+VMMGMGEPL NFDNV ++ I D +G SKR++T
Sbjct: 116 GTVPAKID----------RAITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVT 165
Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
LSTSG VP I + + I V LA+SLHA + LR+ LVPIN+KYPL++L+ AC+ Y
Sbjct: 166 LSTSGVVPMIDELAKVIDVSLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLG 225
Query: 279 ARRI-TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
+R+ T EY +LKG+ND P A +I +L IP KINLIPFNP+P Y I F
Sbjct: 226 EKRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIPFNPFPHSGYERPSNNAIRRF 285
Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQ 378
+ + + G++ +RT RG DI AACGQL R + R
Sbjct: 286 QDILHKGGHNVTVRTTRGEDIDAACGQLVGQVLDRTRRSERY 327
>gi|332879827|ref|ZP_08447516.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332682204|gb|EGJ55112.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 349
Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats.
Identities = 131/372 (35%), Positives = 207/372 (55%), Gaps = 25/372 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K + +EEL + G R +Q+++W++ +G+ F+ M+++ +
Sbjct: 1 MNQ-SKRDIRAFTKEELRRIFEENGDQA----FRGNQVYEWLWQKGVHSFEAMTNLPKAT 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R +L++HF I + ++ + S DGT K +R + +E+V IP +R T CVSS
Sbjct: 56 REMLDKHFVINHIKVDVMQRSDDGTIKNAVRLH-----DGLLVESVLIPTDTRTTACVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL CSFC T K +RNL +EI QV + + GR +S
Sbjct: 111 QVGCSLNCSFCATARLKRMRNLLPDEIFDQVRVI-------------DEQSKAFFGRPLS 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N++NV K++ + + GL S +RITLSTSG I ++ ++ L
Sbjct: 158 NIVFMGMGEPLMNYNNVLKAIDKITSTEGLGMSAKRITLSTSGVPKLIKKMADDEVKFKL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ + +R ++P N ++PL L +A +++ + RIT+EYV+ KGIND +D
Sbjct: 218 AVSLHSAIDSVRTSIMPFNEQFPLSELREALQYWYQKT-KNRITYEYVVWKGINDQRKDV 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
LIK K P+K+NLI +NP E+ +D + + + ++ +G + +R RG DI
Sbjct: 277 EALIKFCKFAPSKVNLIEYNPIDDGEFQQADSRALTLYQTMLEEAGITVTVRHSRGKDID 336
Query: 360 AACGQLKSLSKR 371
AACGQL + + +
Sbjct: 337 AACGQLANKTTK 348
>gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282691|gb|EDT48115.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 366
Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats.
Identities = 129/380 (33%), Positives = 215/380 (56%), Gaps = 26/380 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL E +++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 9 KPSIYGLTRDELIEWVIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + + DGT K+L P IETV + + ++CV+SQVGC+
Sbjct: 65 ENFCVNPLKQRVVQEASDGTVKYLFELPDSM-----LIETVLMRQHYGLSVCVTSQVGCN 119
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC +G K R+LT+ EI Q+++ + + ++S++V+M
Sbjct: 120 IGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+DNV + + ++ GL+ R IT+STSG I E V LA+SLH
Sbjct: 168 GIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVSLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDSP +A L
Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFTAIEYYIETTNR-RVTFEYIMLNDVNDSPENAQELAD 286
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYRRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+S + + + + +
Sbjct: 347 CGQLRSNTMKRDRQKAAKAK 366
>gi|24379004|ref|NP_720959.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans UA159]
gi|81588375|sp|Q8DVG8|RLMN_STRMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|24376896|gb|AAN58265.1|AE014897_11 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 361
Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats.
Identities = 131/375 (34%), Positives = 211/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R +L ++ G + R +QIW W+Y + ++ F+ M+++S++ LLN
Sbjct: 2 KPSIYSLTRNDLIAWTIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 ENFLVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + G +IS++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERISHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+NDSP +A L
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDSPENAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|220917417|ref|YP_002492721.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955271|gb|ACL65655.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans
2CP-1]
Length = 372
Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats.
Identities = 148/378 (39%), Positives = 215/378 (56%), Gaps = 19/378 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E L + +G R Q+++W+++RG + ++D+ + +R L +
Sbjct: 9 PDLRSLPQERLAALIAGLG----EKPFRARQVYRWLHLRGAASLEELTDVPRALRERLAE 64
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ E E+ S DGT KW R G IE+VY+PE R TLCVS+QVGC++
Sbjct: 65 GTRLTTLERATEQRSADGTIKWTWRT-----GDGKLIESVYMPETDRKTLCVSTQVGCAV 119
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TGT L RNLT EI+ QV A L + E R ++N+V MG
Sbjct: 120 GCTFCMTGTMGLARNLTPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+ ++K +L + G +FS R +T+STSG VP + R+GEE V LA+SL+A
Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ R+ ++PINR+YPL L+ ACR +P + RRITFEYVML G+ND+P DA L ++L
Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+GIPAK+NLIP+N PG + + F + + ++ +R RG DI AACGQL
Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPSAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349
Query: 367 SLSKRIPKVPRQEMQITG 384
+ R +TG
Sbjct: 350 AEGGPGDPRRRAAAPLTG 367
>gi|153855358|ref|ZP_01996507.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814]
gi|149752178|gb|EDM62109.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814]
Length = 356
Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats.
Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 29/368 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+ + +EL+E +L IG R+ QI++W++V+ DF M+++S+ +R
Sbjct: 1 MSKKDICSYNYDELKEEMLVIG----EKAFRSKQIYEWLHVKLADDFDEMTNLSKALREK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L +++ I +++D +IS D T K+L +E+V + ++C+SSQV
Sbjct: 57 LKKNYEIRKVKMIDHQISKEDPTEKFLFELE-----DGNMVESVLMKYNYGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + LVR+L E+L Q+ + + G ++SN+
Sbjct: 112 GCRMGCRFCASTIGGLVRSLEPSEMLRQIYHIQKI-----------------TGERVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N+DN K + + SD GL+ S+R IT ST G VPN+ R+ EE + LA+
Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRNITASTCGIVPNMRRLAEEGLQITLAL 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH S + R L+P+ KY L ++DAC +Y + RRITFEY ++ G+ND P D
Sbjct: 215 SLHGSSQEKRKKLMPVANKYDLSEVLDACDYYFDKT-GRRITFEYSLVAGVNDQPDDIRE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ILKG +NLIP NP ++ D+K+ + F ++++G + IR RG DI A
Sbjct: 274 LTTILKGRNCHLNLIPVNPIKERDFKKPDRKNAMEFKNKLEKNGINVTIRRERGSDIDGA 333
Query: 362 CGQLKSLS 369
CGQL+
Sbjct: 334 CGQLRRRH 341
>gi|289433758|ref|YP_003463630.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170002|emb|CBH26542.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 367
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 133/382 (34%), Positives = 216/382 (56%), Gaps = 26/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L + G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEEHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMSTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTNR-RITFEYIMLKGVNDHKKEALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
AACGQL+S + + + Q
Sbjct: 339 AACGQLRSKQIKRVGIRERMKQ 360
>gi|262048118|ref|ZP_06021005.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30]
gi|259163684|gb|EEW48239.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30]
Length = 364
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 204/370 (55%), Gaps = 25/370 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL
Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F++ V ++ S DGT K+L IETV + ++CV++QVGC
Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLFELQ-----DGYTIETVLMRHDYGNSVCVTTQVGC 127
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QVL + L + ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD--------------ATEERVSQIVI 173
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+D + L I +D L+ R IT+STSG +P I +E + A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352
Query: 364 QLKSLSKRIP 373
QL+ +++
Sbjct: 353 QLRVKERQVE 362
>gi|307264804|ref|ZP_07546366.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1]
gi|306920062|gb|EFN50274.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1]
Length = 342
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 139/368 (37%), Positives = 199/368 (54%), Gaps = 30/368 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L +
Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I +I ++S D T K+L IE V I + T CVS+QVGC++
Sbjct: 59 AYISQLKIEARRVSEVDDTVKYLFLLE-----DNNIIEGVAIKYRFGNTACVSTQVGCNM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC + VR+L A E++ QV+ G KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMIDQVIAIDGDYG------------------KISNIVLMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N+D V K + I ++ GL R IT+ST G VP I + +E V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPQGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N + ++ + ++ F + I+ +G S +R G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334
Query: 366 KSLSKRIP 373
+ +
Sbjct: 335 RRKYLKER 342
>gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
Length = 336
Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats.
Identities = 140/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M EE+EE + +G + R Q++KWIY + + DF M+DIS+ +R L + I
Sbjct: 1 MTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEIAYIS 56
Query: 72 YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
+I++ ++S D T K+L + IE V I K T CVS+QVGC++ C F
Sbjct: 57 ELKIIERRVSQIDDTVKYLFLLEDKN-----IIEGVAIKYKFGNTACVSTQVGCNMKCKF 111
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C + VR+L A E++ QV+ S G KISNIV+MG GEP
Sbjct: 112 CASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMGSGEP 153
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
N+D V K + I ++ GL KR IT+ST G VP I + +E V L+ISLHA +N+
Sbjct: 154 FDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNE 213
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LRN L+PINR YPLE L+ ACR+Y +N RITFEY ++ G+ND A L+ +LKG+
Sbjct: 214 LRNELMPINRAYPLEELMKACRYYIEKTNR-RITFEYALIDGVNDKKEHAYQLVDLLKGM 272
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+NLIP N + S+ + ++ F + I+ +G + +R G DI AACGQL+
Sbjct: 273 LCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQLRRKY 332
Query: 370 KR 371
+
Sbjct: 333 LK 334
>gi|288904758|ref|YP_003429979.1| hypothetical protein GALLO_0545 [Streptococcus gallolyticus UCN34]
gi|306830757|ref|ZP_07463921.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977679|ref|YP_004287395.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|288731483|emb|CBI13037.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304427104|gb|EFM30212.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177607|emb|CBZ47651.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 368
Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats.
Identities = 129/375 (34%), Positives = 212/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 9 KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + + DGT K+L P + IETV + + ++CV+SQVGC+
Sbjct: 65 ENFCVNPLKQRVVQEASDGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTSQVGCN 119
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC +G K R+LT+ EI Q+++ + + ++S++V+M
Sbjct: 120 MGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N++NV + L +D GL+ R IT+STSG I E V LA+SLH
Sbjct: 168 GIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVSLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +ND P +A L
Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNEVNDFPENAQELAD 286
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 347 CGQLRSNTMKRDRQK 361
>gi|329117105|ref|ZP_08245822.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
2020]
gi|326907510|gb|EGE54424.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
2020]
Length = 361
Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 204/375 (54%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R +QIW W+Y + + F+ M++IS++ LLN
Sbjct: 2 KPSIYSLTRDELIAWAIENG----QKKFRATQIWDWLYKKRVDSFEEMTNISKDFIALLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DNFCVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + + ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGKDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYTNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNDLRSQIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKNIRKLCYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKTGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKKDRQE 354
>gi|332653341|ref|ZP_08419086.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
gi|332518487|gb|EGJ48090.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
Length = 352
Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats.
Identities = 132/369 (35%), Positives = 196/369 (53%), Gaps = 32/369 (8%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M EEL L G P R QI++WIY RG+ F M+D+S+ +R L + +
Sbjct: 1 MTLEELTAWLKSQGEPG----FRAKQIFRWIY-RGVTSFDEMTDLSKSLREKLKETCFLT 55
Query: 72 YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
P++ +++S DGT K+L G IETV + K T+CVSSQVGC + C+F
Sbjct: 56 VPKVARKQVSQLDGTIKYLWEL-----GDGNCIETVLMRYKHGNTVCVSSQVGCRMGCAF 110
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C + VRNLT E++ QVL + G ISNIV+MG+GEP
Sbjct: 111 CASTLAGKVRNLTPAEMVDQVLFTQ-----------------LDSGAPISNIVLMGIGEP 153
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
L N+D V K L++ + GL+ R I+LST G V I ++ + + L++SLHA ++
Sbjct: 154 LDNYDTVMKFLTLVNHPEGLNIGMRHISLSTCGLVDQIDKLAQRGLQLTLSVSLHAPDDE 213
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
R+ ++P+NR +E L+D CR Y + RRI++EY M+ G+NDS R A L +LKG+
Sbjct: 214 TRSKIMPVNRAVGVERLMDTCRRYFE-TTGRRISYEYAMIDGVNDSDRQADLLAGLLKGM 272
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
P +NLIP N S + + F + ++ G + +R G DI A+CGQL+ +
Sbjct: 273 PGHVNLIPLNDVEESPLKPS--RRVAAFQKRLESHGVTVTVRRRLGSDIDASCGQLRRKA 330
Query: 370 KRIPKVPRQ 378
R+
Sbjct: 331 MGEQARERK 339
>gi|160880620|ref|YP_001559588.1| radical SAM protein [Clostridium phytofermentans ISDg]
gi|205829644|sp|A9KM95|RLMN_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|160429286|gb|ABX42849.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
Length = 356
Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 201/369 (54%), Gaps = 30/369 (8%)
Query: 1 MNFL-KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
M + +K + + EEL+ +L IG R QI++W++V+ +RDF+ M+++S+E
Sbjct: 1 MQSITEKIDIKALTLEELKASLKIIG----EKEFRAKQIYEWLHVKLVRDFEEMTNLSKE 56
Query: 60 VRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
+R L + +I ++ S DGT K+L R +E V + ++C+
Sbjct: 57 LRAKLASEYELICVNDLERYESKMDGTVKYLFRLS-----DGNVVECVLMKYHHGNSVCI 111
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + C FC + L RNL E+L +V + L G +
Sbjct: 112 SSQVGCRMGCRFCASTLGGLTRNLKTSEMLDEVYQIQRL-----------------SGER 154
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
+SNIV+MG GEP+ N+DN K + + S S GL+ S+R IT+ST G VP + + EE +
Sbjct: 155 VSNIVIMGTGEPMDNYDNFVKFIRMISSSDGLNISQRNITVSTCGIVPKMRALAEEGFAI 214
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLHA +++ R ++P+ Y L+ +++AC +Y + RR+++EY ++ G+ND+
Sbjct: 215 TLALSLHAPNDEERAKIMPVANSYQLQDVLNACDYYYEKT-GRRVSYEYSLVDGVNDTAA 273
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A L ++LKG +NLIP NP +Y S +I F ++++ + IR G D
Sbjct: 274 CAKELSRLLKGKNCHVNLIPVNPIKERDYKRSTGNNIQNFKNILEKNRINVTIRREMGSD 333
Query: 358 ILAACGQLK 366
I AACGQL+
Sbjct: 334 INAACGQLR 342
>gi|150016033|ref|YP_001308287.1| radical SAM protein [Clostridium beijerinckii NCIMB 8052]
gi|205829735|sp|A6LSK1|RLMN_CLOB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|149902498|gb|ABR33331.1| radical SAM enzyme, Cfr family [Clostridium beijerinckii NCIMB
8052]
Length = 353
Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats.
Identities = 139/382 (36%), Positives = 208/382 (54%), Gaps = 35/382 (9%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +L+ EEL+ + + G R QI WIY +G+++F M +I + +
Sbjct: 1 MN-----NLLDFTLEELKAWMKENG----ESAFRGQQILSWIY-KGVKEFDNMKNIPKPL 50
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
L ++F + P+I++ S DGT K+LL F IE+V + K ++C+S
Sbjct: 51 VQKLKENFFVGLPKIIEVYKSNIDGTEKFLLGFK-----DGNLIESVLMRYKHGNSICIS 105
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+QVGC++ C FC + + VRNLT EIL Q+++ + + + +I
Sbjct: 106 TQVGCAMGCKFCASTIEGKVRNLTTGEILSQIMVVQDYINE-----------------RI 148
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
SN+V+MG GEPL N++NV K L I S L+ +R ITLST G VP I + + E+ +
Sbjct: 149 SNVVLMGSGEPLDNYNNVIKFLEIVSAEYALNIGQRHITLSTCGIVPKIYELADKELSIT 208
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA SND R ++PI +Y +E +++ACR+Y +N RITFEY ++K +ND D
Sbjct: 209 LALSLHAFSNDKRKEIMPIANRYSIEEILEACRYYINKTNR-RITFEYALVKDVNDGRED 267
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L K+LKG+ +NLIP N Y S +K I FSE +K G R G DI
Sbjct: 268 AKALGKLLKGMLCHVNLIPVNEIKENTYKRSSKKAIEDFSEILKNHGIEVTTRREMGSDI 327
Query: 359 LAACGQLKSLSKRIPKVPRQEM 380
AACGQL+ ++ ++
Sbjct: 328 NAACGQLRRSYINTQEIEGEQN 349
>gi|303239357|ref|ZP_07325885.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2]
gi|302593143|gb|EFL62863.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2]
Length = 347
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 119/364 (32%), Positives = 204/364 (56%), Gaps = 30/364 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+ + EELE L++G + R Q+++W+ +G++D M+++S+++R L
Sbjct: 4 KVDLLNLTIEELENFFLEMG----QQKFRAKQVFQWV-NKGVKDIDEMTNLSKDIRESLR 58
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I E+V++ +S DGT K+L + +E+V + + ++C+SSQVGC
Sbjct: 59 ASAYINKLEVVEKFVSKIDGTTKYLFKLI-----DGNIVESVLMKYEHGFSVCISSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + +RNLT+ E+L QVL ++ G ++ N+V+
Sbjct: 114 KMGCKFCASTGVGFLRNLTSAEMLDQVLTIQN-----------------DAGSRVGNVVV 156
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEP N+DN+ K + + + G++ R I +ST G VP I ++ +E + L+ISL
Sbjct: 157 MGIGEPFDNYDNLVKFIRLINHKDGMNLGARHIAVSTCGLVPEILKLSKENLPITLSISL 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++ R ++P+N++Y ++ LI+AC+ Y + +RRITFEY ++ G+ND A L
Sbjct: 217 HATNDEAREKIMPVNKRYSIDKLIEACKIYTE-TTSRRITFEYALIDGVNDLIEYAQQLS 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG+ +NLIP N + S ++ I F E +++ G + +R G DI AACG
Sbjct: 276 NLLKGMLCHVNLIPVNSVTNTGFKKSSKERIYKFKEVLEKRGIETTVRRELGADIDAACG 335
Query: 364 QLKS 367
QL+
Sbjct: 336 QLRR 339
>gi|218886526|ref|YP_002435847.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|254807169|sp|B8DRU2|RLMN_DESVM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|218757480|gb|ACL08379.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 367
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 136/362 (37%), Positives = 198/362 (54%), Gaps = 17/362 (4%)
Query: 7 ESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++ + +ELE + +G P R R Q+W+W++ + R F M+++S+ R L
Sbjct: 2 IDILNLTYDELEAWMTGTLGEP----RFRARQVWQWLWQKNARSFDAMTNVSKATRARLA 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I +PE+ K S DGT K+LL + V I + K R T C+S QVGC+
Sbjct: 58 EAARITWPEVRTVKTSSDGTVKFLLALADGALVETVLIPSESREGKVRMTQCLSCQVGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG+ RN+T EIL QVL+AR LGD I + N+V M
Sbjct: 118 MGCTFCSTGSMGFERNMTMAEILGQVLVAREHLGDDRPDHPI-----------VRNLVFM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N + V +SL +D GL FS RRIT+ST G + +GE LA+SLHA
Sbjct: 167 GMGEPLLNLNEVMRSLRTLNDEFGLCFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHA 226
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ ++R ++P ++ L+ L+ A YP L RITFEY++L G+NDS A L+++
Sbjct: 227 PNQEVRARIMPRAARWTLDDLMAALESYP-LKTRERITFEYLLLGGVNDSIDHARELVRL 285
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ AK+NLI +NP G Y Q I+ F + + ++ IR +G DI AACGQL
Sbjct: 286 VSRTKAKLNLIVYNPAEGLPYEAPSQARILAFEQYLWSKNVTAIIRKSKGQDIKAACGQL 345
Query: 366 KS 367
K+
Sbjct: 346 KA 347
>gi|315301572|ref|ZP_07872683.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596]
gi|313630054|gb|EFR98076.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596]
Length = 368
Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats.
Identities = 135/383 (35%), Positives = 215/383 (56%), Gaps = 26/383 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E
Sbjct: 1 TMEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL +F + E + S DGT K+L + IETV + ++ ++CV++QV
Sbjct: 57 LLMANFVMNTLEAQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C+FC +G K R+LTA EI+ Q++ + L D + ++S++
Sbjct: 112 GCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDD------------RQLEERVSHV 159
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAI
Sbjct: 160 VVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAI 219
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL
Sbjct: 220 SLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTNR-RITFEYIMLKGVNDHKKEALE 278
Query: 302 LIKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI
Sbjct: 279 LAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDI 338
Query: 359 LAACGQLKSLSKRIPKVPRQEMQ 381
AACGQL+S + V + Q
Sbjct: 339 DAACGQLRSKQIKRVGVRERMKQ 361
>gi|256853566|ref|ZP_05558931.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis T8]
gi|256710509|gb|EEU25552.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis T8]
Length = 357
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ +++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAKIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R +++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + KV Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357
>gi|319947501|ref|ZP_08021733.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
gi|319746441|gb|EFV98702.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
Length = 362
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 129/375 (34%), Positives = 211/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL E + G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYGLTRQELIEWAEENG----EKKFRATQIWEWLYRKRVQSFEEMTNLSKDLIETLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVINPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVLSFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKKIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|295094726|emb|CBK83817.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus sp. ART55/1]
Length = 358
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 126/376 (33%), Positives = 203/376 (53%), Gaps = 30/376 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+++ L M EEL + G P R QI++W +V+ + M+++ + +R
Sbjct: 11 IRQPDLKSMNMEELRNWVTGAGQPA----FRAKQIYQWFHVKLADGTEEMTNLPKSLREK 66
Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+++ + I +V IS DGT K+L R IE+V + K ++C+SSQV
Sbjct: 67 MDE-YGIYGVSVVTRLISEDDGTNKFLFRLH-----DGNVIESVLMKYKHGNSVCISSQV 120
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + LVRNLTA E+L Q+ + + G ++SN+
Sbjct: 121 GCRMGCRFCASTIGGLVRNLTASEMLSQIYSIQKI-----------------TGERVSNV 163
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL NFDN+ + + + +D GL+ S+R +T+S+ G VP I R+ + + A+
Sbjct: 164 VVMGTGEPLDNFDNLVRFIEMLTDENGLNISQRNVTVSSCGLVPEIKRLADMGLSITFAL 223
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +++ R L+PI +Y + ++DAC +Y + RRITFEY ++KG NDSP A
Sbjct: 224 SLHAPNDEDRRALMPIANRYSIAEVLDACDYYFDRT-GRRITFEYSLVKGQNDSPEKACE 282
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ++++G +NLIP NP +Y +D I F ++R+ ++ +R G DI AA
Sbjct: 283 LARLIRGRNCHVNLIPVNPIKERDYERADNSAIENFKNILERNQITATVRRSMGRDIDAA 342
Query: 362 CGQLKSLSKRIPKVPR 377
CGQL+ + K +
Sbjct: 343 CGQLRRKYEEENKTDK 358
>gi|242277580|ref|YP_002989709.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
salexigens DSM 2638]
gi|242120474|gb|ACS78170.1| radical SAM enzyme, Cfr family [Desulfovibrio salexigens DSM 2638]
Length = 351
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 128/373 (34%), Positives = 201/373 (53%), Gaps = 23/373 (6%)
Query: 1 MNFLKK-ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
M+ K ++ + ELE + + R RT QIW+W++ +G+ DF M+++++
Sbjct: 1 MSDNNKMIDILDLEYSELESFVS---QELKAPRFRTDQIWQWLWQKGVEDFDSMTNLAKN 57
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
+R L I +P++ + S DGT K LLR +ETV IP + R T C+S
Sbjct: 58 LRDELKAKAVINHPQVDVVQTSKDGTIKLLLRLK-----DGALVETVLIPMEGRYTQCLS 112
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+QVGC++ C+FC TG RN++ E+L QVL R L + +
Sbjct: 113 TQVGCAMACTFCNTGLMGFERNMSMSEMLGQVLAGRKYLRENNLD-------------PL 159
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
N+V MGMGEPL N DN+ ++L ++ GLSF RRIT+S+ GFV + +G+ +
Sbjct: 160 KNLVFMGMGEPLLNLDNLIRTLRNLNNQDGLSFVPRRITVSSVGFVKQLEELGKTGLTLP 219
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLHA + +LR ++P K +E L+ A +P L ++T+EY++L G+NDS A
Sbjct: 220 AISLHAPTQELREKIMPKAAKTHIEDLLAAMDRFP-LKPREKVTYEYLLLGGVNDSIEHA 278
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+K+L K+NLI +NP Y ++ ++ F + + ++ IR G DI
Sbjct: 279 KQLVKLLGHRRCKVNLIAYNPGDEPLYKAPTREKVLAFEKYLWDKKITATIRRSMGQDIK 338
Query: 360 AACGQLKSLSKRI 372
AACGQLK+ ++
Sbjct: 339 AACGQLKADQQKK 351
>gi|313890464|ref|ZP_07824093.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
SPIN 20026]
gi|313121166|gb|EFR44276.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
SPIN 20026]
Length = 361
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 126/375 (33%), Positives = 205/375 (54%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL + + G + R +QIW W+Y + ++ F+ M++IS++ LLN
Sbjct: 2 KPSIYSLTRDELIDWAIANG----QKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EKFCLNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + + ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFTAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDILKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKKDRQK 354
>gi|225377867|ref|ZP_03755088.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM
16841]
gi|225210305|gb|EEG92659.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM
16841]
Length = 347
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 121/371 (32%), Positives = 202/371 (54%), Gaps = 29/371 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +K + + +EL + ++G R QI++W++V+ F M++IS+ +
Sbjct: 1 MDQKEKTDIRSLNLKELTVFMEQLG----EKAFRAKQIYQWLHVKQAASFDEMTNISKAL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
L ++ ++ + +IS DGTRK+L IE+V++ K ++C+S
Sbjct: 57 IEKLKENSHLVSIKQEAVQISKIDGTRKYLFLL-----DDGNVIESVFMRYKHGNSVCIS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + C FC + LVR LT E+L Q+ G ++
Sbjct: 112 SQVGCRMGCRFCASTLDGLVRGLTPSEMLDQIYQIGR-----------------DTGERV 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
SN+V+MG GEP+ NFDN+ K + + +D GL+ S+R +T+ST G VP + + ++ +
Sbjct: 155 SNVVVMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPRMRELADKKLQIT 214
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA + + R L+P+ KY + +IDAC++Y + RR+TFEY ++ G+ND+ D
Sbjct: 215 LALSLHASTQEKRLELMPVANKYEIHEVIDACKYYFEQT-GRRVTFEYSLVGGVNDTDED 273
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
NL +++KGI +NLIP NP +Y+ D + F ++++G ++ IR G DI
Sbjct: 274 VRNLCRLIKGINCHVNLIPVNPIKERDYVQPDVRVTTEFKNKLEKNGINATIRREMGRDI 333
Query: 359 LAACGQLKSLS 369
ACGQL+
Sbjct: 334 DGACGQLRKRY 344
>gi|307272756|ref|ZP_07554003.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
gi|306510370|gb|EFM79393.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
Length = 357
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 134/379 (35%), Positives = 216/379 (56%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AA GQL+S + KV Q
Sbjct: 339 AAFGQLRSKQMKKEKVKNQ 357
>gi|291536614|emb|CBL09726.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis
M50/1]
Length = 349
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 117/367 (31%), Positives = 193/367 (52%), Gaps = 29/367 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L
Sbjct: 4 EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59
Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + + +IS DGTRK+L IE+V + K ++C+SSQVG
Sbjct: 60 KKECHFVSLKQEAVQISKIDGTRKYLFAL-----DDGNVIESVLMRYKHGNSVCISSQVG 114
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC + LVR LT E+L Q+ G +++N+V
Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITR-----------------DTGERVANVV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG GEP+ NFDN+ K + + +D GL+ S+R +T+ST G VP + + ++ + LA+S
Sbjct: 158 VMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA S + R L+P+ KY + +I+ACR+Y + RR+TFEY ++ G+ND+ D L
Sbjct: 218 LHASSQEKRLELMPVANKYEIHEVIEACRYYFEQT-GRRVTFEYSLVGGVNDTDEDVRRL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ G+ +NLIP NP Y+ D + I+ F ++++ + IR G DI AC
Sbjct: 277 ADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGAC 336
Query: 363 GQLKSLS 369
GQL+
Sbjct: 337 GQLRKRY 343
>gi|290580974|ref|YP_003485366.1| hypothetical protein SmuNN2025_1448 [Streptococcus mutans NN2025]
gi|254997873|dbj|BAH88474.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 361
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 131/375 (34%), Positives = 211/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R +L ++ G + R +QIW W+Y + ++ F+ M+++S++ LLN
Sbjct: 2 KPSIYSLTRNDLIAWTIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 ENFLVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + + G +IS++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERISHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K L +D GL+ R IT+STSG I E + V LAISLH
Sbjct: 161 GIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAISLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDNPENAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
Length = 349
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 147/367 (40%), Positives = 217/367 (59%), Gaps = 24/367 (6%)
Query: 4 LK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++ KE L + R+EL K G P R SQ++ WIY G+ +F M+++ +R
Sbjct: 1 METKEDLKSLSRKELLMWFEKRGYP----SFRASQLFNWIYRNGVDEFSRMNNLPLVLRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQ 121
L + + +IV++ + DGT K+L IE+V+IP + SR ++C+SSQ
Sbjct: 57 ELEEKSYLTKLKIVNKSKAEDGTVKYLWELK-----DGETIESVFIPYEGSRNSVCISSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGCSL C FC TG L+RNLT EI+ QVL + + + ++SN
Sbjct: 112 VGCSLGCKFCATGLTGLIRNLTPGEIVDQVLQIQKEISNDKYGSP-----------RVSN 160
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+V MGMGEPL N +V K++ I +DS GL+ KR+IT+STSG VP I + ++ ++LA
Sbjct: 161 VVFMGMGEPLANMKSVLKAIEIMNDSKGLNIGKRKITVSTSGLVPQIKELADKKLQIVLA 220
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISL+A +N LR+ L+PINRK+PLE L++A R+Y ++N R+TFEYV+LKG NDSP A
Sbjct: 221 ISLNAPNNALRDKLMPINRKFPLEKLLEAVRYYTEVTNR-RVTFEYVLLKGTNDSPEHAF 279
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ +L I +NLIPFNP E+ ++ + F + + +G + +R RG I A
Sbjct: 280 QLVNLLSDIHGHVNLIPFNPVQETEFKRPSKETVNRFKDILINNGVETTVRQERGTRIEA 339
Query: 361 ACGQLKS 367
ACGQL+
Sbjct: 340 ACGQLRR 346
>gi|260588063|ref|ZP_05853976.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583]
gi|260541590|gb|EEX22159.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583]
Length = 348
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 200/365 (54%), Gaps = 29/365 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+++ + + +L+ ++++G R QI++W++ + F MS++S +R
Sbjct: 1 MEQIEIKSLSLVQLKNVMIEMG----EKAFRAKQIYEWLHQKQAESFDEMSNLSAALREK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + + ++++ + S DGT+K+L P +E+V + K ++C+SSQV
Sbjct: 57 LKERCVLTTLKMLEVQTSKIDGTQKYLFALP-----DGNVVESVLMKYKHGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + RNL E+L Q+ + L G ++SN+
Sbjct: 112 GCKMGCRFCASTIGGWTRNLLPSEMLEQIYRIQKL-----------------SGERVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N++N+ + + + +D GL S+R +T+ST G VP + + EE + LAI
Sbjct: 155 VVMGTGEPLDNYENLLQFIRLLTDENGLHISQRNLTVSTCGIVPKMYALAEENLQITLAI 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + + R L+PI KY +E +++ACR+Y + RR+TFEY ++ G ND+ DA
Sbjct: 215 SLHASNQEKRAELMPIANKYSIEEVLEACRNYFEKT-GRRLTFEYSLVGGKNDTKEDAEE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +++KG+ +NLIP NP +Y+ SD+K I F +++ + IR G DI A
Sbjct: 274 LARLIKGLNCHVNLIPVNPIKERDYVQSDKKVIENFKNKLEKYQINVTIRREMGRDIDGA 333
Query: 362 CGQLK 366
CGQL+
Sbjct: 334 CGQLR 338
>gi|228472503|ref|ZP_04057263.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC
33624]
gi|228275916|gb|EEK14672.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC
33624]
Length = 345
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 134/367 (36%), Positives = 209/367 (56%), Gaps = 25/367 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + +EEL+ L G R +Q+++W++ +G F+ M+++S+E R LL++
Sbjct: 2 KDIRALKKEELQAFFLSHG----EKAFRANQVYEWLWTKGAHSFEQMTNLSKETRQLLSE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF I + ++ + S DGT K +R + +E+V IP +R T CVSSQVGCSL
Sbjct: 58 HFVINHIKVDTMQRSEDGTIKNAVRLH-----DGLYVESVLIPTDTRITACVSSQVGCSL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC T K +RNL+ +EI QVL + GR + NIV MG
Sbjct: 113 NCSFCATARLKRMRNLSPDEIFDQVLTI-------------DQQSRLYYGRPLRNIVFMG 159
Query: 187 MGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
MGEPL N+ NV K++ I S+ GL FS +RIT+STSG I ++ ++ LA+SLH
Sbjct: 160 MGEPLMNYPNVMKAIERITSEKEGLGFSPKRITVSTSGVSKLIRKMADDKVKFRLAVSLH 219
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + RN ++P +PL L A +++ + + RIT+EYV+ KGINDSP+D L+
Sbjct: 220 SAIEETRNKIMPWTVDFPLTELRTALQYWYQQTKS-RITYEYVVWKGINDSPKDVEALVA 278
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ P K+NLI +NP + +D+K + + ++ +G ++ IR RG DI AACGQ
Sbjct: 279 FCRFAPCKVNLIEYNPIDEGLFEQADEKALQLYKRKLEEAGITTTIRYSRGKDIDAACGQ 338
Query: 365 LKSLSKR 371
L + +++
Sbjct: 339 LANKNEK 345
>gi|290892377|ref|ZP_06555371.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|290557943|gb|EFD91463.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071]
Length = 367
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 134/382 (35%), Positives = 215/382 (56%), Gaps = 26/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
AACGQL+S + V + Q
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQ 360
>gi|254519239|ref|ZP_05131295.1| radical SAM protein [Clostridium sp. 7_2_43FAA]
gi|226912988|gb|EEH98189.1| radical SAM protein [Clostridium sp. 7_2_43FAA]
Length = 343
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 125/374 (33%), Positives = 198/374 (52%), Gaps = 33/374 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +++ +E+ + + G R Q++ WIY + I +F M ++ + +
Sbjct: 1 MN-----NILNYSLDEISLWMKENG----ESAFRAKQVFSWIY-KNIWNFDDMKNLPKSL 50
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L +F I PE+V++ S + LL IE+V + K ++C+S+
Sbjct: 51 VEKLKGNFYIGIPEVVEKYESTLDGTQKLLL----AFDDGNIIESVIMKYKHGNSICIST 106
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q+GC + C FC + + VRNLT+ EIL +V++A+ ++G+ +IS
Sbjct: 107 QIGCRMGCKFCASTLEGRVRNLTSGEILSEVIIAQKVIGE-----------------RIS 149
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
NIV+MG GEPL N++NV K L + + GL+ +R ITLST G VP I + ++ + L
Sbjct: 150 NIVLMGSGEPLDNYENVTKFLDLVNADYGLNIGQRHITLSTCGLVPKIYELADKGYSITL 209
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLHA S++ R ++PI KY ++ +++AC +Y + RRITFEY ++ GIND DA
Sbjct: 210 AISLHAFSDEKRREIMPIANKYSIKEILEACDYYFEKT-GRRITFEYSLVSGINDGKEDA 268
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K+LKG +NLIP N +K I F + + +G +R G DI
Sbjct: 269 KSLSKLLKGRQCHVNLIPVNEIKENTLKRPSKKTIEEFEKIVNENGIEVTVRREMGNDIN 328
Query: 360 AACGQLKSLSKRIP 373
AACGQL+ +
Sbjct: 329 AACGQLRRNFLKSQ 342
>gi|116871870|ref|YP_848651.1| hypothetical protein lwe0450 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123460725|sp|A0AFT6|RLMN_LISW6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|116740748|emb|CAK19868.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 367
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 134/382 (35%), Positives = 215/382 (56%), Gaps = 26/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
AACGQL+S + V + Q
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQ 360
>gi|89890089|ref|ZP_01201600.1| radical SAM domain protein [Flavobacteria bacterium BBFL7]
gi|89518362|gb|EAS21018.1| radical SAM domain protein [Flavobacteria bacterium BBFL7]
Length = 346
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 197/365 (53%), Gaps = 24/365 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + +++L E + G R +Q+++W++ +G F M+++S++ R L
Sbjct: 5 KKDIRSYTQDQLREYFVDQG----QQAFRGNQVYEWLWKKGAHHFDDMTNLSKDTRAFLQ 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I + + + S DGT K ++ + +E+V IP +R T CVSSQVGCS
Sbjct: 61 EHFVINHIRVDHMQRSKDGTIKNAVKLH-----DGLTVESVMIPTPTRTTACVSSQVGCS 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T K +RNL +EI QV+ + R +SNIV M
Sbjct: 116 LNCEFCATARLKRMRNLNPDEIYDQVVAI-------------DQQSKNYHNRPLSNIVFM 162
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
GMGEPL N+ NV KS+ + GL S +RITLSTSG + ++ ++ LA+SLH
Sbjct: 163 GMGEPLMNYKNVIKSIDKITGDDGLGMSPKRITLSTSGVPKMMKKLADDRPRFNLALSLH 222
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ ++ R ++P N ++PLE + +A R++ + R+T+EYV+ KGIND+ D LI+
Sbjct: 223 SAIDEKRVKIMPFNEQFPLEDIKEALRYWYDKT-GTRVTYEYVVWKGINDTKEDIDALIE 281
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K IP K+N+I +N + + ++ + + + R G++ +R RG DI AACGQ
Sbjct: 282 FCKVIPCKVNIIEYNSIDDARFEQASKQAVDAYERELNRYGFTVNVRRSRGKDIDAACGQ 341
Query: 365 LKSLS 369
L +
Sbjct: 342 LANKE 346
>gi|16799559|ref|NP_469827.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
Clip11262]
gi|46906726|ref|YP_013115.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes serotype 4b str. F2365]
gi|47092541|ref|ZP_00230330.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
str. 4b H7858]
gi|217965434|ref|YP_002351112.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23]
gi|226223105|ref|YP_002757212.1| conserved hypothetical protein, highly similar to B. subtilis YloN
protein [Listeria monocytogenes Clip81459]
gi|254824244|ref|ZP_05229245.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|254829423|ref|ZP_05234110.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|254830533|ref|ZP_05235188.1| hypothetical protein Lmon1_04192 [Listeria monocytogenes 10403S]
gi|254853849|ref|ZP_05243197.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|254933233|ref|ZP_05266592.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262]
gi|254993511|ref|ZP_05275701.1| hypothetical protein LmonocytoFSL_11352 [Listeria monocytogenes FSL
J2-064]
gi|255521363|ref|ZP_05388600.1| hypothetical protein LmonocFSL_09075 [Listeria monocytogenes FSL
J1-175]
gi|284800757|ref|YP_003412622.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578]
gi|284993943|ref|YP_003415711.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923]
gi|81403675|sp|Q723G9|RLMN_LISMF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81595444|sp|Q92EH6|RLMN_LISIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807187|sp|B8DCJ5|RLMN_LISMH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|259491990|sp|C1KZZ3|RLMN_LISMC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|16412924|emb|CAC95716.1| lin0484 [Listeria innocua Clip11262]
gi|46879991|gb|AAT03292.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019133|gb|EAL09877.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
str. 4b H7858]
gi|217334704|gb|ACK40498.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23]
gi|225875567|emb|CAS04270.1| Putative conserved hypothetical protein, highly similar to B.
subtilis YloN protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258601839|gb|EEW15164.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|258607233|gb|EEW19841.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|284056319|gb|ADB67260.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578]
gi|284059410|gb|ADB70349.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923]
gi|293584792|gb|EFF96824.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262]
gi|293593478|gb|EFG01239.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|307570010|emb|CAR83189.1| conserved hypothetical protein [Listeria monocytogenes L99]
gi|328467548|gb|EGF38610.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes 1816]
gi|332310902|gb|EGJ23997.1| Ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes str. Scott A]
Length = 367
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 134/382 (35%), Positives = 215/382 (56%), Gaps = 26/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
AACGQL+S + V + Q
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQ 360
>gi|39996213|ref|NP_952164.1| ribosomal RNA large subunit methyltransferase N [Geobacter
sulfurreducens PCA]
gi|81702805|sp|Q74E53|RLMN_GEOSL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|39982978|gb|AAR34437.1| conserved hypothetical protein TIGR00048 [Geobacter sulfurreducens
PCA]
gi|307634805|gb|ADI83948.2| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 360
Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 158/368 (42%), Positives = 215/368 (58%), Gaps = 31/368 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ + + G+ +ELE LL G R R QI+KW+Y RG F M+D+++E+
Sbjct: 1 MDTM--IDIKGLSIDELERFLLGKG----KERYRARQIFKWLYQRGATSFAEMTDLAKEL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I +IS DGTRK+L R +E+V IPE+ R TLC+SS
Sbjct: 55 RRDLEETARISTLSPEALEISRDGTRKYLFRL-----DDGCSVESVLIPEEDRNTLCISS 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TGT +L RNLT EI+ QV + + +
Sbjct: 110 QVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDV-------------------PVR 150
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIV MGMGEPL N DNV ++L I GL FS RRIT+ST+G VP + R+G + V LA
Sbjct: 151 NIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLA 210
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SL+A +++LR+ ++PINRKYPL +L+DACR +P L R+IT EYV+L G+ND+ DA
Sbjct: 211 VSLNATTDELRDRIMPINRKYPLAVLLDACRRFP-LPGRRKITIEYVLLGGVNDTLDDAK 269
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+++L IP+KINLIPFN GC + Q I F + ++ R+ RG DI A
Sbjct: 270 RLVRLLSDIPSKINLIPFNEHEGCSFRSPSQDAIDRFHRYLLDKHFTVITRSSRGADISA 329
Query: 361 ACGQLKSL 368
ACGQLK
Sbjct: 330 ACGQLKGK 337
>gi|300765131|ref|ZP_07075117.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017]
gi|300514102|gb|EFK41163.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017]
Length = 367
Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 134/382 (35%), Positives = 215/382 (56%), Gaps = 26/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L
Sbjct: 220 LHAPNNELRMSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
AACGQL+S + V + Q
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQ 360
>gi|146299542|ref|YP_001194133.1| radical SAM protein [Flavobacterium johnsoniae UW101]
gi|205829760|sp|A5FJ06|RLMN_FLAJO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146153960|gb|ABQ04814.1| radical SAM enzyme, Cfr family [Flavobacterium johnsoniae UW101]
Length = 349
Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 203/367 (55%), Gaps = 24/367 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ + + +++L + + R +Q+++W++ +G F+ M+++++ R +
Sbjct: 3 IEKKDIRALSKDQLRDFFVAN----NDKAFRGNQVYEWLWSKGAHSFEDMTNVAKTTRSM 58
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++F I + ++ + S DGT K +R + +E+V IP ++R T CVSSQVG
Sbjct: 59 LEENFVINHIKVDTMQRSNDGTVKNAVRLH-----DGLVVESVLIPTETRTTACVSSQVG 113
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL C+FC T K +RNL EI Q++ + +SNIV
Sbjct: 114 CSLDCNFCATARLKRMRNLEPGEIYDQIMAI-------------DKESRLYHNHPLSNIV 160
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N++NV K++ + + GL S +RITLSTSG I ++ ++ LA+S
Sbjct: 161 FMGMGEPLMNYNNVIKAIDMVTSEEGLGMSPKRITLSTSGIPKMIKKMADDDVKFRLAVS 220
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ ++ R ++P ++ +PL+ L +A ++ + + ++++EYV+ KGIND L
Sbjct: 221 LHSAIDETRAKIMPFSKNFPLKDLREALEYWYRKTKS-KVSYEYVVWKGINDDKASVDAL 279
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K K +P K+NLI +NP E+ + ++ I+ + + ++ G +R RG DI AAC
Sbjct: 280 VKFCKYVPCKVNLIEYNPIDDGEFQQASEESILAYIKALENIGVVVKVRRSRGKDIDAAC 339
Query: 363 GQLKSLS 369
GQL +
Sbjct: 340 GQLANKE 346
>gi|47094708|ref|ZP_00232323.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
str. 1/2a F6854]
gi|224500691|ref|ZP_03669040.1| hypothetical protein LmonF1_13881 [Listeria monocytogenes Finland
1988]
gi|254900292|ref|ZP_05260216.1| hypothetical protein LmonJ_10775 [Listeria monocytogenes J0161]
gi|254911154|ref|ZP_05261166.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254935482|ref|ZP_05267179.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900]
gi|255026212|ref|ZP_05298198.1| hypothetical protein LmonocytFSL_07400 [Listeria monocytogenes FSL
J2-003]
gi|47016848|gb|EAL07766.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
str. 1/2a F6854]
gi|258608058|gb|EEW20666.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900]
gi|293589079|gb|EFF97413.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 367
Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 134/382 (35%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESADGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
AACGQL+S + V + Q
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQ 360
>gi|297568774|ref|YP_003690118.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
gi|296924689|gb|ADH85499.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
Length = 354
Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 154/366 (42%), Positives = 209/366 (57%), Gaps = 19/366 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ +K L M EL + + + R QI+ WI+ DF M+DI++ V
Sbjct: 1 MDT-EKVDLKNMTLPELTAWVESLDL----KPFRARQIFAWIHRPDFTDFSQMTDIAKHV 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LL + + E + S DGT K+ R IE+V IPE R TLCVSS
Sbjct: 56 RSLLAEKAFLSRLEPDKVESSQDGTVKFAFRL-----ADGQLIESVLIPEDDRYTLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC T T RNL A EI+ QV A L PG +I+
Sbjct: 111 QVGCAMGCRFCLTATMGFKRNLEAAEIVGQVDAALRWLLARPGAT--------GEKTRIN 162
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V MGMGEPL NFD++ +++ I + G FS RRIT+ST G VP + +GE++ V LA
Sbjct: 163 NLVFMGMGEPLLNFDHLLRAIKILMEQRGHDFSGRRITVSTCGIVPKMKELGEQVPVNLA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ND+R+ L+PIN+KYPLE L+ ACR YP L RRI EYVM+K +NDS A
Sbjct: 223 VSLHAADNDIRDQLMPINKKYPLEQLLRACREYP-LPPRRRIMIEYVMIKDLNDSVAQAR 281
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+K L GI KIN++P+N P Y D++ + F + ++R+G+++ +R RG DI A
Sbjct: 282 LLVKKLHGIRCKINILPYNENPDSPYQAPDEETVENFRQILRRAGHTTLLRQSRGADISA 341
Query: 361 ACGQLK 366
ACGQL
Sbjct: 342 ACGQLA 347
>gi|332521669|ref|ZP_08398122.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4]
gi|332042758|gb|EGI78958.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4]
Length = 346
Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 201/366 (54%), Gaps = 24/366 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK+ + + +E+L E +K G R +Q+++W++ +G F+ M++IS+E R +L
Sbjct: 4 KKKDIRALSKEQLREFFVKEG----DKAFRGNQVYEWLWGKGAHTFEDMTNISKETRQML 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F I + + + S DGT K ++ + +E+V IP ++R T CVSSQVGC
Sbjct: 60 QDNFVINHISVDTMQRSSDGTVKNAVKLH-----DGLIVESVLIPTETRTTACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C FC T K +RNL +EI QV+ + R +SNIV
Sbjct: 115 SLDCKFCATSRLKRMRNLNPDEIYDQVVAI-------------DKESKLYFNRPLSNIVF 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N++NV K++ + GL S +RI +STSG I ++ ++ + LA+SL
Sbjct: 162 MGMGEPLMNYNNVIKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDAVKFNLAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ +++R ++P N+ +PL L +A ++ + +IT+EYV+ GIND D L+
Sbjct: 222 HSAIDEVRTEIMPFNKTFPLNDLKEALEYWYEKTQR-KITYEYVVWDGINDRREDINALV 280
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K K +P KIN+I +NP ++ + K I + + ++ + +R RG DI AACG
Sbjct: 281 KFCKYVPCKINIIEYNPIDDGQFQQASSKAIDNYIQALESNNIVVNVRRSRGKDIDAACG 340
Query: 364 QLKSLS 369
QL + S
Sbjct: 341 QLANKS 346
>gi|238924694|ref|YP_002938210.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656]
gi|238876369|gb|ACR76076.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656]
Length = 354
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 120/378 (31%), Positives = 206/378 (54%), Gaps = 31/378 (8%)
Query: 1 MNFLKK--ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
M +K+ + M +EL E ++ +G + R QI++WI+V+ + F M++IS+
Sbjct: 1 MEQIKEQLTDIKSMNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVDSFDEMTNISK 56
Query: 59 EVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
+ +L + +I + + ++S DGTRK+L IE+V + K ++C
Sbjct: 57 KFIQVLKDNAILISLKKEEVQVSKLDGTRKYLFAL-----DDGNVIESVLMKYKHGNSVC 111
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQVGC + C FC + LVR L E++ Q+ +G+
Sbjct: 112 ISSQVGCRMGCRFCASTLDGLVRGLRPSEMIDQIYQIGKDIGE----------------- 154
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
+ISN+V+MG GEPL N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E
Sbjct: 155 RISNVVVMGTGEPLDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLA 214
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ LA+SLHA + + R L+P+ Y + ++DAC++Y + RR+TFEY ++ G+ND+
Sbjct: 215 ITLALSLHASNQEKRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTA 273
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
DA L ++ G+ INLIP NP +Y+ S++ I F ++++G + IR G
Sbjct: 274 EDAAELSALVHGMNCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGR 333
Query: 357 DILAACGQLKSLSKRIPK 374
DI ACGQL+ +
Sbjct: 334 DIDGACGQLRKKHIDKER 351
>gi|306832938|ref|ZP_07466070.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
gi|304424837|gb|EFM27971.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
Length = 368
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 211/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 9 KPSIYALTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + + DGT K+L P + IETV + + ++CV+SQVGC+
Sbjct: 65 ENFCVNPLKQRVVQEASDGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTSQVGCN 119
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC +G K R+LT+ EI Q+++ + + ++S++V+M
Sbjct: 120 IGCSFCASGLLKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N++NV + L +D GL+ R IT+STSG I E V LA+SLH
Sbjct: 168 GIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVSLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +ND P +A L
Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNEVNDFPENAQELAD 286
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 347 CGQLRSNTMKRDRQK 361
>gi|282600947|ref|ZP_05980240.2| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM
15176]
gi|282570117|gb|EFB75652.1| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM
15176]
Length = 345
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 132/366 (36%), Positives = 202/366 (55%), Gaps = 28/366 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K L EL ++ +G P + R QI+KW++ + + +F M+D + + +
Sbjct: 1 MRKICLSDYTLAELTAYIVGLGQP----KFRAKQIFKWLHQKLVTEFTQMTDQPKTLLAV 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + +I P I ++ S DGT K+LL+ IETV + K T+CVS+QVG
Sbjct: 57 LEEQCTIAVPTIRRKQQSKDGTVKYLLQL-----ADGNCIETVLMRYKYGNTVCVSTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC + VR+LTA EI ++ A+ G ++S+IV
Sbjct: 112 CAMGCRFCASTQAGRVRDLTAGEIAAEIYTAQK-----------------DSGERVSHIV 154
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEPL NFDNV L I S G++ R I+LST G VP I + + + L++S
Sbjct: 155 LMGIGEPLHNFDNVMDFLEIISCPEGVNIGMRNISLSTCGLVPKIDELAKRHLQLTLSVS 214
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA N R+ ++P+N YPLE LI ACR Y + RRI+FEY M++G+NDS A L
Sbjct: 215 LHAPDNVTRSGMMPVNDAYPLEELIPACRRYQKET-GRRISFEYSMVRGVNDSSEMAQKL 273
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++ G+ A +NLIP NP G Y +D+ ++ F + ++ G ++ +R G DI AAC
Sbjct: 274 ARLIHGMGAHVNLIPINPVDGSPYSATDEANVRRFQQELEHLGVNATVRRRLGTDISAAC 333
Query: 363 GQLKSL 368
GQL+
Sbjct: 334 GQLRRE 339
>gi|295696043|ref|YP_003589281.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912]
gi|295411645|gb|ADG06137.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912]
Length = 360
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 200/366 (54%), Gaps = 26/366 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L G+ EL L + G P R +Q++ W+Y + + M+++ + +R++L +
Sbjct: 15 IHLYGLTLAELRTWLEEQGEPG----YRAAQLFDWMYKKRVTSVDAMTNLPKALRNVLRE 70
Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ E + ++S T K+L R +ETV + ++CVSSQVGC
Sbjct: 71 RARLGTMEELTRQVSKKDGTTKFLFRL-----FDGATVETVLMRHSYGHSVCVSSQVGCH 125
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + LVRNL A E++ QVL + +L G+++S++V+M
Sbjct: 126 MGCQFCASTLGGLVRNLEAGEMVEQVLACQRMLDQ--------------QGQRVSSVVVM 171
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+ + + + + GL +R IT+STSG VP I ++ EE + LA+SLH
Sbjct: 172 GSGEPLENYGATLRFIRLITADEGLRIGQRHITVSTSGMVPAIRKLAEERLQITLAVSLH 231
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++++R+ L+PINR YP+ +L++ACR Y + RR+TFEY ++ GIND A L
Sbjct: 232 ASNDEVRSRLMPINRAYPIAVLLEACREYWEKT-GRRLTFEYALIGGINDRLDQADELAD 290
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
L+G+P +NLIP N P + + ++ + F E ++R G S +R G DI AACGQ
Sbjct: 291 RLRGLPCHVNLIPVNYVPERRFDRTPRRQVEAFRERLERHGISCTVRREMGADIAAACGQ 350
Query: 365 LKSLSK 370
L++ +
Sbjct: 351 LRAGYE 356
>gi|16802525|ref|NP_464010.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes EGD-e]
gi|224502216|ref|ZP_03670523.1| hypothetical protein LmonFR_06797 [Listeria monocytogenes FSL
R2-561]
gi|81592923|sp|Q8Y9P2|RLMN_LISMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|16409858|emb|CAC98561.1| lmo0482 [Listeria monocytogenes EGD-e]
Length = 367
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 134/382 (35%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
AACGQL+S + V + Q
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQ 360
>gi|94264318|ref|ZP_01288111.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
gi|93455284|gb|EAT05494.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
Length = 345
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 154/367 (41%), Positives = 207/367 (56%), Gaps = 22/367 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K L + EL + + + R QI+ W+Y DF M+DI++ V
Sbjct: 1 MNN-PKTDLKNLTLPELTAWVETLNL----KPFRARQIFSWLYRPDFSDFAQMTDIAKHV 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LL + + E E+ S DGT K+ R IE+V IPE+ R TLCVSS
Sbjct: 56 RALLAEKATFSRLEAAKEEHSTDGTVKFAFRLS-----DGHLIESVLIPEEDRHTLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C+FC TGT +RNLT E++ QV A L +++
Sbjct: 111 QVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVDQAAHWLWQRGAGSG-----------RLN 159
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V MGMGEPL NFDN+ K+++I + G S RRIT+ST G VP + +GE++ V LA
Sbjct: 160 NLVFMGMGEPLLNFDNLIKAINILMEQRGHDLSGRRITVSTCGIVPRMKELGEKVPVNLA 219
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + R L+P+NR YPL L+ ACR YP L RRI EY +L GINDSP A
Sbjct: 220 VSLHAADHATREQLMPVNRTYPLAELLQACRQYP-LPPRRRIMIEYALLAGINDSPAAAR 278
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+K L GI KIN++PFN P Y C D I F + ++R+G+++ +RT RG DI A
Sbjct: 279 LLVKQLHGIRCKINILPFNETPAFPYRCPDPATIEAFRQILRRAGHTTLLRTSRGADIAA 338
Query: 361 ACGQLKS 367
ACGQL +
Sbjct: 339 ACGQLAA 345
>gi|312866070|ref|ZP_07726291.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
gi|311098474|gb|EFQ56697.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
Length = 375
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 132/375 (35%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R++L + L+ G + R SQIW W+Y + ++ F M++IS++ LL
Sbjct: 14 KPSIYSLTRDQLIDWSLEHG----QKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLK 69
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 70 ENFDFNPLKQRIVQESADGTIKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 124
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI Q++L + L D G ++S++V+M
Sbjct: 125 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYLDD------------QGNGERVSHVVVM 172
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV + L +D GL+ R IT+STSG I E I V LA+SLH
Sbjct: 173 GIGEPFDNYDNVIRFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGIQVNLAVSLH 232
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L DA +Y +N R+TFEY+ML +ND P +A L
Sbjct: 233 APNNELRSSIMRINRSFPLEKLFDAIEYYIQTTNR-RVTFEYIMLNEVNDYPENAQELAD 291
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+N + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 292 LTKSIRKLSYVNLIPYNAVSEHDQYSRSTKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 351
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 352 CGQLRSNTMKRDRQK 366
>gi|327489556|gb|EGF21349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058]
Length = 362
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R SQIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND +A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEEAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|303326495|ref|ZP_07356938.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
gi|302864411|gb|EFL87342.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
Length = 353
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 137/364 (37%), Positives = 204/364 (56%), Gaps = 17/364 (4%)
Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L+ EL + + ++G P + R Q+W+WI+ + RDF MS++S+ R L
Sbjct: 2 INLLNYTLPELTDWMQTELGEP----KFRAVQVWQWIWQKMARDFDAMSNVSKACRARLA 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I +PE+ + S DGT K+LLR + V I + R T C+SSQVGC+
Sbjct: 58 ETARIDWPEVARVQESSDGTTKFLLRLEDGALVETVLIPSDSREGVRRWTQCLSSQVGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG RN+T EIL Q+L+AR LGD + + N+V M
Sbjct: 118 MGCTFCATGDMGFERNMTMGEILGQILVAREHLGDNRPDWPV-----------LRNLVFM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N V ++L ++ GL+FS RRIT+ST G +A +G LA+SLHA
Sbjct: 167 GMGEPLLNLREVMRALQSLNNDKGLNFSPRRITVSTCGIEKGLAELGASGLAYLAVSLHA 226
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR ++P ++PL+ L+ A + YP L RITFEY++L GIND P A L ++
Sbjct: 227 PTQELRARIMPKAARWPLDQLLAALKSYP-LKTRERITFEYLLLGGINDGPGQAGELARL 285
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ I K+NLI +NP G Y D+ ++ F +C+ + ++ +R +G DI AACGQL
Sbjct: 286 VADIKGKLNLIVYNPAEGAPYAAPDEARVLAFEQCLWKRHITAIVRKSKGQDIKAACGQL 345
Query: 366 KSLS 369
K+ S
Sbjct: 346 KAAS 349
>gi|313905219|ref|ZP_07838587.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6]
gi|313469972|gb|EFR65306.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6]
Length = 351
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 130/366 (35%), Positives = 205/366 (56%), Gaps = 29/366 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ + M+ EL+EAL ++G R Q+++W++ + + ++ M+++S+ +R
Sbjct: 1 MREDTDIKSMLPGELKEALAQMG----EKPFRAGQVFEWLHDKRVEKYEEMTNLSKVLRE 56
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + + ++V E+IS DGTRK+L P IE+V++ ++C+SSQ
Sbjct: 57 KLADSYPLTTLQVVREEISKVDGTRKYLFALPDHN-----VIESVWMKYHHGNSVCISSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C FC + LVR+LTA E+L QV + + G ++SN
Sbjct: 112 VGCRMGCRFCASTLGGLVRSLTASEMLEQVYQIQRV-----------------TGERVSN 154
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
IV+MG GEPL N++NV + + + S GL+ S+R IT+ST G VPNI R+ EE V LA
Sbjct: 155 IVIMGSGEPLENYENVVRFVQLVSHEKGLNLSQRNITISTCGIVPNIRRLAEEELSVTLA 214
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHA +++ R L+PI KY + ++DACR+Y + RR+TFEY + G NDS DA
Sbjct: 215 ISLHAPTDEKRKKLMPIANKYSIAEIMDACRYYFDKT-GRRLTFEYALTGGQNDSDEDAA 273
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++L + +NLIP NP ++ ++ ++ F ++ G + IR G DI
Sbjct: 274 ELARLLAHLNCHVNLIPVNPVRERSFIRPNRTAVLAFQNKLENFGINVTIRREMGSDING 333
Query: 361 ACGQLK 366
ACGQL+
Sbjct: 334 ACGQLR 339
>gi|223984316|ref|ZP_03634459.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM
12042]
gi|223963716|gb|EEF68085.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM
12042]
Length = 347
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ LEE +L +G + R QI++W+Y + F M+D+S+E+ L +
Sbjct: 2 KTIYDYSYSGLEELVLSLGW----KKYRADQIFQWLYRKHATSFDQMTDLSKEMIAALKE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I ++V++++S DGT K+L G +E V + +LCV+SQ+GC++
Sbjct: 58 QFCINPIQLVEKQVSRDGTVKFLFEL-----GDGALVECVLMTYNYGRSLCVTSQIGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC +G K R+LT+ E++ QV+ + L +IS++V+MG
Sbjct: 113 GCTFCASGLLKKQRDLTSGEMVAQVMTVQLELD--------------KEEDRISHVVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N+DNV + + GL+ R IT+STSG +P+I R E LAISLHA
Sbjct: 159 TGEPFDNYDNVLNFCNTINHDKGLAIGARHITISTSGLIPSIDRFAAEHKQYNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR+ ++P+N+ YPL L+ R Y + N RR+TFEY++L+G+ND+ A+ L +
Sbjct: 219 PTDELRSRIMPVNKAYPLGPLMACLRRY-SVENNRRLTFEYILLQGVNDTNEMAVKLAAL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G+ A +NLIP+N Y +D K + F + + + G + +R G DI AACGQL
Sbjct: 278 IRGMNAYVNLIPYNQVDENGYKSTDYKSAMRFYDVLMKQGVKATLRQEHGNDIDAACGQL 337
Query: 366 KSLSKRIP 373
++ +R+
Sbjct: 338 RAKHERMR 345
>gi|251782933|ref|YP_002997236.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242391563|dbj|BAH82022.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323127736|gb|ADX25033.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 360
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + RE+L + G + R +QIW W+Y + ++ F M++IS++ +L
Sbjct: 2 KPSIYSLTREDLIAWAIDHG----QKKFRATQIWDWLYKKRVQSFDDMTNISKDFIAILK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 ENFCVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + + ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKKDREK 354
>gi|291527115|emb|CBK92701.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale M104/1]
Length = 354
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 120/378 (31%), Positives = 206/378 (54%), Gaps = 31/378 (8%)
Query: 1 MNFLKK--ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
M +K+ + M +EL E ++ +G + R QI++WI+V+ + F M++IS+
Sbjct: 1 MEQIKEQLTDIKSMNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISK 56
Query: 59 EVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
+ +L + +I + + ++S DGTRK+L IE+V + K ++C
Sbjct: 57 KFIQVLKDNAILISLKKEEVQVSKLDGTRKYLFAL-----DDGNVIESVLMKYKHGNSVC 111
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQVGC + C FC + LVR L E++ Q+ +G+
Sbjct: 112 ISSQVGCRMGCRFCASTLDGLVRGLRPSEMIDQIYQIGKDIGE----------------- 154
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
+ISN+V+MG GEPL N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E
Sbjct: 155 RISNVVVMGTGEPLDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLS 214
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ LA+SLHA + + R L+P+ Y + ++DAC++Y + RR+TFEY ++ G+ND+
Sbjct: 215 ITLALSLHASNQEKRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTA 273
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
DA L ++ G+ INLIP NP +Y+ S++ I F ++++G + IR G
Sbjct: 274 EDAAELSALVHGMNCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGR 333
Query: 357 DILAACGQLKSLSKRIPK 374
DI ACGQL+ +
Sbjct: 334 DIDGACGQLRKKHIDKER 351
>gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
Length = 365
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 155/374 (41%), Positives = 214/374 (57%), Gaps = 27/374 (7%)
Query: 1 MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
MN K + + + E + +G ++KW++ G+ DF M+D+ +
Sbjct: 1 MNATSTKPNPLDLDLAGCESLVTALGF----KAFHGRNLFKWMHKHGVVDFDAMTDLPKS 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
+R +L + I P I+ S DGT KW++ +ETV+IPE R T+CVS
Sbjct: 57 LRTVLLETVEIRLPRILQTHPSADGTVKWVMELV-----DGQRVETVFIPEGKRSTICVS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC+L C+FC T Q RNL+ EI+ QV A LG P
Sbjct: 112 SQVGCALECAFCATARQGFNRNLSVAEIIGQVWHAARQLGAAP----------------- 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL NF+ K++ + D + +K+R+TLSTSG VPNI R+ E V L
Sbjct: 155 TNVVMMGMGEPLANFEAAVKAMDVMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSL 214
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA +++LR+ LVPINRKYPL LI AC+HY R+IT+EYVML GINDSP A
Sbjct: 215 AVSLHAPNDELRDELVPINRKYPLAELIPACKHYVAGDKRRKITWEYVMLDGINDSPAHA 274
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
LI++L+G+P+K+NLIPFNP+ G ++ S + TF E + RSG + R RG +I
Sbjct: 275 KQLIRLLEGVPSKVNLIPFNPFTGSDFGTSPPDRVETFRERLARSGIFAMTRKTRGDEIA 334
Query: 360 AACGQLKSLSKRIP 373
AACGQL +
Sbjct: 335 AACGQLVGRVQDRT 348
>gi|225018694|ref|ZP_03707886.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum
DSM 5476]
gi|224948422|gb|EEG29631.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum
DSM 5476]
Length = 348
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 131/368 (35%), Positives = 201/368 (54%), Gaps = 29/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ + EEL E L +G P + R Q++ W++ + + DF M+++S + R L +
Sbjct: 3 TDILSLTYEELAEKLGALGQP----KYRAKQVFAWLHSKQVLDFAQMTNLSIQFREQLGK 58
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I +I + +S D T K+L +ETV + ++CVS+QVGC
Sbjct: 59 NFYINEIKIRKKLVSQLDDTVKYLYELR-----DGEFVETVVMRYHHGNSICVSTQVGCR 113
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC + VR+LT EIL Q+ A LG+ KISN+V+M
Sbjct: 114 MGCSFCASTKAGFVRHLTPSEILGQIYTAERDLGE-----------------KISNVVLM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEPL NF+NV L + S G + R +TLST G V I R+ E+ + L+ISLH
Sbjct: 157 GIGEPLDNFNNVLTFLELLSHPEGRNLGMRHVTLSTCGLVDQIYRLAEKNLQITLSISLH 216
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ LR+ +P+NR+YP++ L+ ACR Y + RRI+FEY ++ G NDSP A L
Sbjct: 217 APNDGLRSQTMPVNRRYPIDELLAACRAYADRT-GRRISFEYALIDGFNDSPAHAKELAS 275
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++G+ +NLIP N +Y S Q+ + F++ ++ SG ++ +R G DI AACGQ
Sbjct: 276 RIRGMLCHVNLIPVNRIEERDYASSSQQSVKRFAQVLESSGINATVRRTLGQDINAACGQ 335
Query: 365 LKSLSKRI 372
L+ K
Sbjct: 336 LRRDEKDR 343
>gi|239904707|ref|YP_002951445.1| hypothetical protein DMR_00680 [Desulfovibrio magneticus RS-1]
gi|259491985|sp|C4XTP4|RLMN_DESMR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|239794570|dbj|BAH73559.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 351
Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats.
Identities = 133/362 (36%), Positives = 199/362 (54%), Gaps = 22/362 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+LI + ELE ++ +G P R Q+W+W++ + R+ GM+D+S+ +R L +
Sbjct: 2 TNLIDLTFHELESLIVSLGEP----PYRARQVWQWLWQKRCREIAGMTDVSKALRARLEE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I +P + + S DGT K+LL +E V IPEK T C+S+QVGC++
Sbjct: 58 VAEIRWPVVEMVRESRDGTVKFLLAL-----DDGERVECVLIPEKDHYTACLSTQVGCAM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RN+T E+L QVL+ R L D + N+V MG
Sbjct: 113 GCGFCATGMLGFRRNMTPGEMLGQVLVGRQYLTDKGVELG------------LRNLVFMG 160
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N++N+ K+L GL FS RRIT+ST+G ++ +G LAISLHA
Sbjct: 161 MGEPLLNYENLLKTLEALHHPQGLDFSGRRITVSTAGVARHLLDLGRTGLCSLAISLHAP 220
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ R ++P + L+ L+D YP L R+TFEY++L G+ND+ DA L+++L
Sbjct: 221 TQAQRERIMPGAARLELDKLMDLLAQYP-LKPRERLTFEYLLLAGVNDADADARELVRLL 279
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ AK+NLI FN PG Y D+ ++ F + +K G ++ +R +G DI AACGQL+
Sbjct: 280 SRVKAKVNLIVFNATPGLPYSPPDEARVLAFQDILKSKGLTATLRKSKGSDIAAACGQLR 339
Query: 367 SL 368
+
Sbjct: 340 AE 341
>gi|302874751|ref|YP_003843384.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B]
gi|307690634|ref|ZP_07633080.1| ribosomal RNA large subunit methyltransferase N [Clostridium
cellulovorans 743B]
gi|302577608|gb|ADL51620.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B]
Length = 351
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 119/369 (32%), Positives = 190/369 (51%), Gaps = 30/369 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ +EL++ + G R Q++ WIY + + F M ++ + + L +
Sbjct: 2 RNILDYSLKELKQWMEANG----ENAFRAKQVFDWIY-KAVASFDEMKNLPKNTKEKLKE 56
Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I PEI + S T K+LL+ IE VY+ ++C+S+Q+GC
Sbjct: 57 YFFIGIPEITHKYDSINKDTAKYLLKLS-----DGNVIEAVYMKYNYGNSVCLSTQIGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC + +R+LT+ +IL ++L + ++SNIV+M
Sbjct: 112 MGCSFCASTIGGRIRDLTSGDILGEILAME-----------------FNEKERVSNIVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
G GEP N++NV K L + + GL+ R ITLST G VP I R + + V LAISLH
Sbjct: 155 GSGEPFDNYENVTKFLELVNSKDGLNIGARHITLSTCGLVPGIIRFADLKSQVTLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LR ++PI KY ++ +++AC +Y +N RITFEY ++K +ND+ A L
Sbjct: 215 APNDELRKTMMPIANKYSIKEILEACNYYIEKTNR-RITFEYSLVKDVNDTEDHARELSA 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGI +NLIP N + K ++ F + + +G + IR G DI AACGQ
Sbjct: 274 LLKGILCHVNLIPVNVVKESGFSRPSDKAVMKFKKILDSNGIEATIRKEMGADINAACGQ 333
Query: 365 LKSLSKRIP 373
L+
Sbjct: 334 LRRNYLEKR 342
>gi|332664665|ref|YP_004447453.1| ribosomal RNA large subunit methyltransferase N [Haliscomenobacter
hydrossis DSM 1100]
gi|332333479|gb|AEE50580.1| Ribosomal RNA large subunit methyltransferase N [Haliscomenobacter
hydrossis DSM 1100]
Length = 343
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 125/363 (34%), Positives = 191/363 (52%), Gaps = 22/363 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+ ELEE ++G + R Q+++W++ +G+R F M+++S+ +R L
Sbjct: 2 DIRQRSLAELEELFKEMG----EAKFRAKQVYEWLWQKGVRSFDAMTNLSKSLREKLAAS 57
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
F I + S DGT K R + V I P+ R T+CVS QVGCSLT
Sbjct: 58 FVINGIVEDKVQRSADGTIKSRFRLHDGHMIESVLIPV---PDDKRFTVCVSCQVGCSLT 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG VRNL A EI QV++ + + G +SNIV MGM
Sbjct: 115 CKFCATGRMNRVRNLDAAEIYDQVVMVNQQCLE-------------TFGHPLSNIVYMGM 161
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
GEPL ++NV +S+ + GL S RRIT+ST+G I ++ ++ LA+SLHA
Sbjct: 162 GEPLLAYNNVMESIERLTAPDGLHMSPRRITISTAGIAKMIKKLADDGCKTNLALSLHAA 221
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ R+ L+PIN + L +L+DA ++ ++ RI++EY+ + +ND DA NL K+
Sbjct: 222 DDLKRDELMPINEQNNLAVLMDALEYFYRKTH-NRISYEYITFQNVNDGLDDAANLAKLC 280
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ P ++N+I +NP YL S++ I F+ ++ + +R RG DI AACGQL
Sbjct: 281 RRFPVRVNIIEYNPIGDVPYLKSEEDRIDAFARYLREREITVTVRRSRGKDIDAACGQLA 340
Query: 367 SLS 369
+
Sbjct: 341 NKE 343
>gi|332363981|gb|EGJ41760.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355]
Length = 362
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + E + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLEQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|269837848|ref|YP_003320076.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
20745]
gi|269787111|gb|ACZ39254.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
20745]
Length = 347
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 139/364 (38%), Positives = 195/364 (53%), Gaps = 26/364 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L + ELEE L G+P R R QI+ W Y + D+ M+ + + +R L
Sbjct: 3 LYDLTLAELEERLAADGVP----RYRARQIFHWAYRQLAVDYDAMTVLPKTLRADLATRL 58
Query: 69 SIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ V E + T K L R IETV + R T+CVS QVGC++
Sbjct: 59 PLTPLTPVREVQTDDGETIKTLFRTV-----DGQHIETVLMFYPDRTTVCVSCQVGCAVG 113
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC TG L RNLTA E+ GR ++NIVMMGM
Sbjct: 114 CSFCATGMMGLTRNLTAGEM--------------VAQVVAAARRAREAGRTLTNIVMMGM 159
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
GEP N++ + + I + G++F RRIT+STSG VP I R+ E V LA+SLHA
Sbjct: 160 GEPFQNYEATMRMVRILHEEEGMNFGARRITVSTSGLVPFIDRLAREPFQVKLAVSLHAP 219
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++DLR+ LVP+NR+YP+ LI ACR Y G + RR+TFEYV++ G+NDS +A L ++L
Sbjct: 220 NDDLRSSLVPLNRRYPIGELIAACRRYVGET-GRRVTFEYVLIDGVNDSDANAEELARLL 278
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+G+ +NLIP NP P + + I F + ++ G + +R RG+DI AACGQL+
Sbjct: 279 RGLLCHVNLIPLNPTPAAPFGRPSVERINRFEQILRARGIPATVRYSRGVDISAACGQLR 338
Query: 367 SLSK 370
+ +
Sbjct: 339 AEYE 342
>gi|322385917|ref|ZP_08059558.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
gi|321270032|gb|EFX52951.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
Length = 362
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 207/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + REE+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTREEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELS-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|283769598|ref|ZP_06342494.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
gi|283103866|gb|EFC05252.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
Length = 348
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ + +LEE +L++G + R Q++ W+Y + + F+ M+D+ L
Sbjct: 2 QTIYDLTLHQLEELVLELG----QKKYRAKQLFTWLYRKRVLSFEEMTDLPTSFIEELKS 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF I+ + V ++S DGTRK+L IETV + +LCV+SQ+GC++
Sbjct: 58 HFIIMPVKEVMRQVSKDGTRKYLFSLE-----DGSSIETVLMHFNFGESLCVTSQLGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC +G K R+L+ EIL Q++ + L S +ISNIV+MG
Sbjct: 113 GCTFCASGLLKKQRDLSQGEILGQLMYVQKELD--------------SENLRISNIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHA 245
GEP N+D+V A+ +GL R IT+ST G VP I + LAISLHA
Sbjct: 159 TGEPFDNYDHVLGFCKTANQDIGLGIGARHITISTCGIVPKIREFSKSHYQYNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR+ L+PIN +YPL L+D+ + Y SN RRITFEY++L G+NDS + A+ L +
Sbjct: 219 PNQELRDKLMPINHRYPLSELMDSLKEYSE-SNHRRITFEYILLHGVNDSDQHAIELAHL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G+ A +NLIP+N Y +D K + F + + + G + +R G DI AACGQL
Sbjct: 278 IRGMNAYVNLIPYNKVDEKGYESTDDKTALHFYDVLMKHGVKATLRQKHGDDIDAACGQL 337
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 338 RAKHEKGR 345
>gi|324990694|gb|EGC22630.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353]
gi|324993429|gb|EGC25349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405]
gi|327461703|gb|EGF08034.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1]
Length = 362
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R SQIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|322419007|ref|YP_004198230.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
gi|320125394|gb|ADW12954.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
Length = 344
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 138/373 (36%), Positives = 208/373 (55%), Gaps = 29/373 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K + + + LE + +G R R QI+KW+Y DF M+++S+E R +
Sbjct: 1 MEKTDIKNLTLQGLEAFIAGLG----KERFRAKQIFKWLYQMDATDFDEMTNVSKEFRAV 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + I + S DGTRK+L R +E+V IP++ R TLC+SSQVG
Sbjct: 57 LKERAEIGDLSPEAVEASEDGTRKYLFRLK-----DGAAVESVLIPDEGRNTLCISSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC TG+ L RNLT EI+ QV + ++NIV
Sbjct: 112 CAMKCAFCLTGSFGLSRNLTTAEIVNQVCAVKR-------------------EHPVNNIV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N V ++ I +D G S R++T+STSG VP +A +G V LA+SL
Sbjct: 153 FMGMGEPLHNLAAVIPAVQILTDPDGFQLSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+A ++++R+ ++PINR+YPL+ L+ AC+ +P S IT EYV+++ +NDS DA L+
Sbjct: 213 NATTDEVRDRIMPINRRYPLKELLAACKAFPLPSRRW-ITMEYVLIRDLNDSLDDAKRLV 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++ IP+K+NLIPFN GC + Q+ I F + + + R+ RG DI AACG
Sbjct: 272 RLISNIPSKVNLIPFNEHDGCSFKSPTQETIDRFHKYLLDKHVTVITRSSRGGDISAACG 331
Query: 364 QLKSLSKRIPKVP 376
QLK R+ +
Sbjct: 332 QLKGKLDRMQEEK 344
>gi|331082368|ref|ZP_08331494.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330400854|gb|EGG80455.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 348
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 197/365 (53%), Gaps = 29/365 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+++ + + +L+ ++++G R QI++W++ + F MS++S +R
Sbjct: 1 MEQIEIKSLSLMQLKNTMIEMG----EKAFRAKQIYEWLHQKQAESFDEMSNLSAALREK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + + ++++ + S DGT+K+L P +E+V + K ++C+SSQV
Sbjct: 57 LKERCVLTTLKMLEVQTSKIDGTQKYLFALP-----DGNVVESVLMKYKHGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + RNL E+L Q+ + L G ++SN+
Sbjct: 112 GCKMGCRFCASTIGGWTRNLLPSEMLEQIYRIQKL-----------------SGERVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N+DN+ + + + +D GL S+R +T+ST G VP + + EE + LAI
Sbjct: 155 VVMGTGEPLDNYDNLLQFIRLLTDENGLHISQRNVTVSTCGIVPKMYELAEENLQITLAI 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + R L+PI KY + +++ACR+Y + RR+TFEY ++ G ND+ DA
Sbjct: 215 SLHASNQAKRAELMPIANKYSINEVLEACRNYFEKT-GRRLTFEYSLVGGKNDTKEDAEE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ++KG+ +NLIP NP +Y+ SD+K I F +++ + IR G DI A
Sbjct: 274 LAHLIKGLNCHVNLIPVNPIKERDYVQSDKKVIENFKNKLEKYQINVTIRREMGRDIDGA 333
Query: 362 CGQLK 366
CGQL+
Sbjct: 334 CGQLR 338
>gi|218666070|ref|YP_002426339.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218518283|gb|ACK78869.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 362
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 167/371 (45%), Positives = 218/371 (58%), Gaps = 26/371 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ L+G+ R+ L + L G R +QI +W++ R + DF M+DIS+ +R L
Sbjct: 11 ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 66
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PEI+ ++ + D TRKWLLR P IETV+IP + RGTLC+SSQVGC
Sbjct: 67 AAETRIDMPEIIADQTAADCTRKWLLRLP-----DGNAIETVFIPGEDRGTLCISSQVGC 121
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q L RNL EI+ QV +AR LG I+NIV
Sbjct: 122 SLACSFCATGAQGLSRNLETHEIIAQVRVARDFLGLDA----------------ITNIVF 165
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEP+ N V +L + D F RRIT+ST+G VP + R+G E V LAISLH
Sbjct: 166 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 225
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++R+ILVP+NR YPL L+ ACR L RRITFEYVML+G+ND+ A L++
Sbjct: 226 ASRDEIRDILVPVNRHYPLAELLAACRR-YPLPPRRRITFEYVMLEGVNDADSHARELLR 284
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ IPA +NLIPFNP+PG +Y S Q I F + I R + R PRG DI AACGQ
Sbjct: 285 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 344
Query: 365 LKSLSKRIPKV 375
L + +
Sbjct: 345 LAGQVRAGRRS 355
>gi|325955527|ref|YP_004239187.1| ribosomal RNA large subunit methyltransferase N [Weeksella virosa
DSM 16922]
gi|323438145|gb|ADX68609.1| Ribosomal RNA large subunit methyltransferase N [Weeksella virosa
DSM 16922]
Length = 348
Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats.
Identities = 123/372 (33%), Positives = 204/372 (54%), Gaps = 25/372 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K+ + + +++LE IG R Q+++W++ + DF M+++S+ +
Sbjct: 1 MNPT-KKDIRKLSQQDLEVYFQSIG----EKAFRGKQVYEWLWKKNAHDFNDMTNLSKNL 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L+ F I E+ + S DGT K ++ +E+V IP ++R T C+SS
Sbjct: 56 RENLDAAFRIQPVEVDFLQKSNDGTIKNAVKLH-----DGNVVESVLIPTETRTTACISS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL C+FC T K +RNLTA EI+ QV++ ++ R +S
Sbjct: 111 QVGCSLDCTFCATAQLKRMRNLTAAEIVDQVVIIDRESREY-------------FDRPLS 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N+ V +++ + GL S RRITLSTSG I ++ +E + L
Sbjct: 158 NIVFMGMGEPLLNYTEVVEAIKKITLPEGLGMSPRRITLSTSGIPKMIEKLADEDLKIGL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ ++RN ++P + K+PL L+ + +++ + +ITFEY++ K IND D
Sbjct: 218 AVSLHSAREEIRNKIMPFSVKFPLTDLLKSLQYWYD-TTKSKITFEYIVWKDINDKKEDI 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L++ K +P+K+N+I +N Y + + + + + ++++G +R RG DI
Sbjct: 277 DALVRFCKRVPSKVNIIEYNTIDDGPYQQASPQVLNAYIDALEKNGIIVNVRRSRGKDID 336
Query: 360 AACGQLKSLSKR 371
AACGQL + + +
Sbjct: 337 AACGQLANKTTK 348
>gi|322412262|gb|EFY03170.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 360
Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + RE+L + G + R +QIW W+Y + ++ F M++IS++ +L
Sbjct: 2 KPSIYSLTREDLIAWAIDHG----QKKFRATQIWDWVYKKRVQSFDDMTNISKDFIAILK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 ENFCVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + + ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKKDREK 354
>gi|85859749|ref|YP_461951.1| radical SAM protein [Syntrophus aciditrophicus SB]
gi|123752486|sp|Q2LUM5|RLMN_SYNAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|85722840|gb|ABC77783.1| radical SAM family enzyme [Syntrophus aciditrophicus SB]
Length = 348
Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats.
Identities = 147/370 (39%), Positives = 214/370 (57%), Gaps = 25/370 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + ++ M EE+E + +G + R QI KW+Y +G + F M+ +S+ VR
Sbjct: 3 MNRINIRDMSLEEIESFISSLG----KEKYRARQIMKWLYSQGAKSFDEMTTLSRAVRDQ 58
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
LN+ I PEI + S DGTRK L R IE+V IP K T C+S+QVG
Sbjct: 59 LNEMACITLPEIARVQQSSDGTRKILFRLQDNSF-----IESVLIPGKHNWTACISTQVG 113
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC+T Q RNL EI Q+ + + L + P +I NIV
Sbjct: 114 CHMGCRFCFTARQGFRRNLKPSEITGQLTMLQFYLPEGP---------------EIKNIV 158
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N+ N K++ I + GL FS R+ITLSTSG P I ++G ++ + LAISL
Sbjct: 159 MMGMGEPLANYRNTLKAIRIITSDYGLGFSTRKITLSTSGITPMIEQLGRDLCINLAISL 218
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+A ++ +R+ L+P+NRKYPL+ L+ ACR+YP + R +TFEY+++ G+N SP A L
Sbjct: 219 NAPTDSIRSELMPVNRKYPLDRLLQACRNYP-MPGRRMLTFEYILIDGVNSSPAHAEMLC 277
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKGI K+NLI FN +P C + ++ ++ F + + + Y++ IR RG DILAACG
Sbjct: 278 RLLKGIRCKLNLIRFNEFPDCPFKTPSEETVLAFQQILVKHHYTAIIRASRGRDILAACG 337
Query: 364 QLKSLSKRIP 373
QL +
Sbjct: 338 QLSGKALEEK 347
>gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
Length = 342
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 138/368 (37%), Positives = 200/368 (54%), Gaps = 30/368 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L +
Sbjct: 3 NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I ++ ++S D T K+L + IE V I + T CVS+QVGC++
Sbjct: 59 AYISQLKVEARRVSEIDNTVKYLFLLEDKN-----IIEGVAIKYRFGNTACVSTQVGCNM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC + VR+L A E++ QV+ S G KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMSIDSDYG------------------KISNIVLMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N+D V K + I ++ GL R IT+ST G +P I + +E V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N + + + ++ F + I+ +G S +R G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334
Query: 366 KSLSKRIP 373
+ +
Sbjct: 335 RRKYLKER 342
>gi|294661183|ref|YP_003573058.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus
5a2]
gi|227336333|gb|ACP20930.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus
5a2]
Length = 339
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 180/346 (52%), Positives = 235/346 (67%), Gaps = 14/346 (4%)
Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
+ R Q+W+W+Y G + F M+++ R L H+S+ + IS D T KW
Sbjct: 5 KEPAFRADQVWRWVYQLGAQSFSTMNNVPLLFRETLGLHYSLERTQEHQVLISKDKTIKW 64
Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
LL F E+ETV+IPE++R TLC+SSQVGC+L C FC+TGTQ LVRNL A EI+
Sbjct: 65 LLAFSDAN-----EVETVWIPEQTRSTLCISSQVGCTLNCKFCHTGTQPLVRNLRAGEIV 119
Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
Q+L A+ +L D+P RKI+NIVMMGMGEPL N++ V K++ I
Sbjct: 120 AQLLHAKDVLQDWPSHAPT---------RKINNIVMMGMGEPLLNYEQVAKAIQIMMHPQ 170
Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
GL S+++ITLSTSG VP I R EE+GV LAISLHAV+++LRN LVPIN+KYP+ L+
Sbjct: 171 GLDISRKKITLSTSGIVPQIKRCAEELGVNLAISLHAVTDELRNHLVPINKKYPINELLQ 230
Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
ACR Y ++ R+ITFEYVMLKG+NDSP DA L+ ++KGIPAKINLIPFNPWPG E C
Sbjct: 231 ACRDYASITGCRKITFEYVMLKGVNDSPADAKKLVDLIKGIPAKINLIPFNPWPGTELEC 290
Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
S + +I F+ I+++GY +P+RTPRG DI+AACGQLKS S +
Sbjct: 291 STESNIKQFAAIIEKAGYIAPVRTPRGEDIMAACGQLKSASIKAKA 336
>gi|225574500|ref|ZP_03783110.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM
10507]
gi|225038287|gb|EEG48533.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM
10507]
Length = 347
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 118/373 (31%), Positives = 194/373 (52%), Gaps = 29/373 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M EEL +AL +G R Q+++WI+ + + M+++S+ +R L +
Sbjct: 2 TDIKSMTLEELRQALTGLG----EKPFRAKQLYEWIHRKLAVSYDEMTNLSKHLREKLEK 57
Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + E VD ++S T K+L R IE+V + ++C+SSQVGC
Sbjct: 58 EYPLTVLEAVDVQVSKQDGTCKYLFRLE-----DGNVIESVLMRYHHGNSVCISSQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + L RNL + E+L Q+ + L ++SN+V+M
Sbjct: 113 MGCKFCASTIGGLTRNLRSSEMLDQIYRIQRL-----------------SQERVSNVVVM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N++N+ + + + + GL S+R +T+ST G VP I ++ +E + LA+SLH
Sbjct: 156 GTGEPLDNYENLLRFIELLTGEDGLHISQRNLTVSTCGLVPKIRQLADEKLQITLALSLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++ R L+PI KY ++ ++DACR+Y + RRITFEY +++G+ND DA L
Sbjct: 216 APNDEKRKELMPIAYKYTMDEVLDACRYYFQKT-GRRITFEYSLVRGVNDFEEDACQLAG 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++ I +NLIP NP + S ++ + F +++ G + IR G DI ACGQ
Sbjct: 275 QIQDINCHVNLIPVNPVKERSFRQSTRQAVENFKIKLEKCGINVTIRREMGSDIDGACGQ 334
Query: 365 LKSLSKRIPKVPR 377
L+ K
Sbjct: 335 LRKRFIDEQKGKE 347
>gi|258406363|ref|YP_003199105.1| ribosomal RNA large subunit methyltransferase N [Desulfohalobium
retbaense DSM 5692]
gi|257798590|gb|ACV69527.1| radical SAM enzyme, Cfr family [Desulfohalobium retbaense DSM 5692]
Length = 359
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 134/366 (36%), Positives = 207/366 (56%), Gaps = 23/366 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++ +++ + ++L L + G P R R QIW+W++++G F+ M+++S+ +R
Sbjct: 1 MRPKTIHDISFDDLAAWLTEQGQP----RFRAEQIWQWLWIKGATSFEDMTNVSKSLRSA 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+Q F I P + + S DGTRK+LL +ETV IP T C+S+QVG
Sbjct: 57 LSQVFPIALPTVAEVHTSADGTRKFLLNLH-----DGHVLETVLIPGGEHFTQCLSTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L C+FC TG L RNL+A EI QV++AR+ L G ++ N+V
Sbjct: 112 CNLGCTFCSTGQMGLTRNLSAAEIAGQVIVARNHL------------WQTGTGMRLRNLV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N++NV +L + ++FS RR+T+ST G + +G LA+SL
Sbjct: 160 FMGMGEPLLNWENVDNALDRLIHASAMNFSPRRVTVSTVGVPGTLDALGHSHKASLAVSL 219
Query: 244 HAVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
HA + +LR ++P + PL L+ R YP ++ +R+T EYV+L G+NDS A L
Sbjct: 220 HAPNQELREKIMPRAARMLPLPDLLARLRSYP-MAPRQRVTIEYVLLGGVNDSLDQARQL 278
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ L GI K+NLI FNP PG Y + + ++ F ++ G ++ +R +G DI AAC
Sbjct: 279 VRCLNGIRCKVNLIAFNPCPGLPYSAPETEQVLAFETLLRDKGLTATLRKSKGQDISAAC 338
Query: 363 GQLKSL 368
GQLK+
Sbjct: 339 GQLKTR 344
>gi|198283710|ref|YP_002220031.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248231|gb|ACH83824.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 363
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 167/371 (45%), Positives = 218/371 (58%), Gaps = 26/371 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ L+G+ R+ L + L G R +QI +W++ R + DF M+DIS+ +R L
Sbjct: 12 ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 67
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PEI+ ++ + D TRKWLLR P IETV+IP + RGTLC+SSQVGC
Sbjct: 68 AAETRIDMPEIIADQTAADCTRKWLLRLP-----DGNAIETVFIPGEDRGTLCISSQVGC 122
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL CSFC TG Q L RNL EI+ QV +AR LG I+NIV
Sbjct: 123 SLACSFCATGAQGLSRNLETHEIIAQVRVARDFLGLDA----------------ITNIVF 166
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEP+ N V +L + D F RRIT+ST+G VP + R+G E V LAISLH
Sbjct: 167 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++R+ILVP+NR YPL L+ ACR L RRITFEYVML+G+ND+ A L++
Sbjct: 227 ASRDEIRDILVPVNRHYPLAELLAACRR-YPLPPRRRITFEYVMLEGVNDADSHARELLR 285
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+ IPA +NLIPFNP+PG +Y S Q I F + I R + R PRG DI AACGQ
Sbjct: 286 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 345
Query: 365 LKSLSKRIPKV 375
L + +
Sbjct: 346 LAGQVRAGRRS 356
>gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
Length = 339
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 152/346 (43%), Positives = 202/346 (58%), Gaps = 19/346 (5%)
Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG 98
KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW +
Sbjct: 1 MKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD---- 56
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
+ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++
Sbjct: 57 --QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIV 114
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
G + R I+N+VMMGMGEPL N +NV ++ I D G SKRR+T
Sbjct: 115 G----------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVT 164
Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
LSTSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y SN
Sbjct: 165 LSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSN 224
Query: 279 AR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
A R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y S I
Sbjct: 225 ANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDR 284
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381
FS+ + G+++ +R RG DI AACGQL R + R+ MQ
Sbjct: 285 FSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 330
>gi|125717485|ref|YP_001034618.1| radical SAM family Fe-S oxidoreductase [Streptococcus sanguinis
SK36]
gi|262282762|ref|ZP_06060530.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
gi|205829909|sp|A3CLL3|RLMN_STRSV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|125497402|gb|ABN44068.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family, putative
[Streptococcus sanguinis SK36]
gi|262262053|gb|EEY80751.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
gi|325697044|gb|EGD38931.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160]
gi|327458790|gb|EGF05138.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057]
gi|327473422|gb|EGF18842.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408]
gi|328945604|gb|EGG39755.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087]
gi|332362856|gb|EGJ40649.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49]
Length = 362
Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|160939809|ref|ZP_02087156.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC
BAA-613]
gi|158437243|gb|EDP15008.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC
BAA-613]
Length = 362
Score = 345 bits (884), Expect = 8e-93, Method: Composition-based stats.
Identities = 129/374 (34%), Positives = 207/374 (55%), Gaps = 29/374 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + M EE+ + +G R Q++ W++V+ F MS +S +R L
Sbjct: 10 KKDIKSMTLEEVTAQMAALG----EKSFRAKQLYDWMHVKLAEGFDDMSSLSIPLRQKLK 65
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+++S+ ++VDE++S DGTRK+L IE+V++ ++C+SSQVGC
Sbjct: 66 ENYSLTCLKMVDERVSQVDGTRKYLFGLE-----DGHVIESVWMQYHHGNSVCISSQVGC 120
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + L RNL E+L Q+ +S+ G ++SN+V+
Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLEQIYRIQSI-----------------TGERVSNVVV 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEP+ N+DNV + L + S GL+ S+R +T+ST G VP I + EE V LA+SL
Sbjct: 164 MGSGEPMDNYDNVIRFLRLVSHEKGLNISQRSLTISTCGIVPGIRKFAEEGLAVTLALSL 223
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++++R L+P+ Y L+ +++AC +Y + RR+TFEY +++G+ND+ +A L
Sbjct: 224 HAPNDEVRKTLMPVANSYKLQDVLEACHYYYEKT-GRRLTFEYSLVRGVNDNLDEARALA 282
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K++K +NLIP NP +Y+ S QK I F ++++G + IR G DI ACG
Sbjct: 283 KLIKDQHGHVNLIPVNPIKERDYVQSGQKAIQDFKNLLEKNGINVTIRREMGRDIGGACG 342
Query: 364 QLKSLSKRIPKVPR 377
QL+ K VP+
Sbjct: 343 QLRRSYKEASAVPQ 356
>gi|332522196|ref|ZP_08398448.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
Jelinkova 176]
gi|332313460|gb|EGJ26445.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
Jelinkova 176]
Length = 360
Score = 345 bits (884), Expect = 9e-93, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 204/375 (54%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL + + G R R +QIW W+Y + ++ F+ M++IS++ LLN
Sbjct: 2 KPSIYSLTRDELIDWAIANG----QKRFRATQIWDWLYKKRVQSFEEMTNISKDFISLLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EQFCLNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + + ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAA 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S + + F + +K++G + +R G DI AA
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKARVEAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKKDRQK 354
>gi|157151429|ref|YP_001449957.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gordonii str. Challis substr. CH1]
gi|205829902|sp|A8AVZ7|RLMN_STRGC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157076223|gb|ABV10906.1| radical SAM enzyme, Cfr family [Streptococcus gordonii str. Challis
substr. CH1]
Length = 362
Score = 345 bits (884), Expect = 9e-93, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
Length = 361
Score = 345 bits (884), Expect = 9e-93, Method: Composition-based stats.
Identities = 129/381 (33%), Positives = 211/381 (55%), Gaps = 28/381 (7%)
Query: 1 MNFLKKES--LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
M KK + + G+ + +L + + Q + R +Q+W+W+Y + + F+ M+++ +
Sbjct: 1 MKRGKKVNPSIYGLTKSDLSLWITE----QNEKKFRANQVWEWLYEKRVTSFEEMTNLPK 56
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
+ L+ F I + + + + DGT K+L + P IETV + ++ ++CV
Sbjct: 57 PLIEKLSAAFVINPLKQMVVQEASDGTVKYLFQLP-----DNHMIETVLMRQEYGMSVCV 111
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
++QVGC++ C+FC +G K R+LTA EI+ Q++L + + + G +
Sbjct: 112 TTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDE------------RNEGER 159
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
+S++V+MG+GEP N+DNV L I +D GL+ R IT+STSG I E V
Sbjct: 160 VSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLHA +N++R ++ INR +P+E L+ A +Y +N RITFEY+ML +ND P
Sbjct: 220 NLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNR-RITFEYIMLDHVNDRPE 278
Query: 298 DALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
A L +LK + +NLIP+NP + Y S + D++ F + +K++G + IR
Sbjct: 279 HARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKNGINCVIRKEH 338
Query: 355 GLDILAACGQLKSLSKRIPKV 375
G DI AACGQL+S +
Sbjct: 339 GTDIDAACGQLRSKQMKKEAS 359
>gi|307708474|ref|ZP_07644939.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
gi|307615390|gb|EFN94598.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
Length = 361
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 211/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|255535320|ref|YP_003095691.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium
3519-10]
gi|255341516|gb|ACU07629.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium
3519-10]
Length = 358
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 26/370 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+N + + + + EEL+ + +G R Q+++W++ + + M+++S+++
Sbjct: 12 INTM--KDIRTLSLEELQNYFVTLG----EKPFRAKQVYEWLWSKNLHSIDEMTNLSKDL 65
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R + Q ++I + + S DGT K ++ + +E+V IP ++R T CVSS
Sbjct: 66 REKIAQEYTINPISVDQLQKSSDGTIKNGVKLH-----DGLLVESVLIPTETRTTACVSS 120
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL C FC T K +RNL EI+ QV L R +S
Sbjct: 121 QVGCSLNCEFCATARLKRMRNLEVAEIVDQVALIDR-------------QSKMYFDRPLS 167
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEP+ N+ NV +++ + GL + RRIT+STSG I + +E V L
Sbjct: 168 NIVFMGMGEPMMNYKNVVEAIRKITAPDGLGMAPRRITVSTSGIPKMIKMLADENLRVNL 227
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ RN ++P + ++PL ++D+ +H+ + +TFEY + KGIND D
Sbjct: 228 ALSLHSAIEKTRNEIMPFSDRFPLTDIMDSLKHWYEKT-GNIVTFEYCVWKGINDEDEDI 286
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
LI+ K IP K+NLI +NP +Y ++ + ++ +G + IR RG DI
Sbjct: 287 KALIRYCKQIPCKVNLIQYNPIGDGKYDRCNKAAEENYVRQLENAGITVLIRRSRGGDID 346
Query: 360 AACGQLKSLS 369
AACGQL + S
Sbjct: 347 AACGQLANKS 356
>gi|291541044|emb|CBL14155.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis
XB6B4]
Length = 349
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 116/367 (31%), Positives = 193/367 (52%), Gaps = 29/367 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L
Sbjct: 4 EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSIQEKL 59
Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + + +IS DGTRK+L IE+V + K ++C+SSQVG
Sbjct: 60 KKECHFVSLKQEAVQISKIDGTRKYLFAL-----DDGNVIESVLMRYKHGNSVCISSQVG 114
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC + LVR LT E+L Q+ G +++N+V
Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITR-----------------DTGERVANVV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG GEP+ NFDN+ + + + +D GL+ S+R +T+ST G VP + + ++ + LA+S
Sbjct: 158 VMGTGEPMDNFDNLLRFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA S + R L+P+ KY + +I+ACR+Y + RR+TFEY ++ G+ND+ D L
Sbjct: 218 LHASSQEKRLELMPVANKYEIHEVIEACRYYFEQT-GRRVTFEYSLVGGVNDTDEDVRRL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ G+ +NLIP NP Y+ D + I+ F ++++ + IR G DI AC
Sbjct: 277 ADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGAC 336
Query: 363 GQLKSLS 369
GQL+
Sbjct: 337 GQLRKRY 343
>gi|302389594|ref|YP_003825415.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
DSM 16646]
gi|302200222|gb|ADL07792.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
DSM 16646]
Length = 346
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 131/366 (35%), Positives = 210/366 (57%), Gaps = 30/366 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K +L GM EEL++ ++ +G P R QI++WIY +G+ DF+ M+D+ + +
Sbjct: 1 MAKTNLKGMTVEELQDFIVSLGEP----PYRARQIFRWIY-KGVTDFEKMTDLPRTLVEK 55
Query: 64 LNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + I I + + D T K+L IE+V + ++CVSSQV
Sbjct: 56 LKELSYIDKIGIYKKFQSRKDATVKYLFLLS-----DNNIIESVKMEHSYGVSVCVSSQV 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C+FC + L R+L + E++ Q+L+ + + ++IS++
Sbjct: 111 GCAMGCAFCASTIDGLKRSLNSGEMVDQILVIQEDIK-----------------KRISHV 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N+D + K L+I + + + S RRIT+ST G VP I R+ +E + L++
Sbjct: 154 VIMGSGEPLLNYDELIKFLNIINSPLAFNISYRRITVSTCGIVPEIRRLADEGLPITLSV 213
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +DLR+ LVP+NR+YP+ L+DAC++Y +N RITFEY ++ +NDS A+
Sbjct: 214 SLHAPEDDLRDKLVPVNRRYPILELLDACKYYIIKTNR-RITFEYALISDVNDSKECAVK 272
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ++LKG+ +NLIP NP +++ S ++I F E ++ G S +R G DI AA
Sbjct: 273 LARLLKGLLCHVNLIPLNPVRERDFMRSKPENIRLFQEILRHYGISVTVRQEMGADIEAA 332
Query: 362 CGQLKS 367
CGQL+
Sbjct: 333 CGQLRR 338
>gi|270292529|ref|ZP_06198740.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
gi|270278508|gb|EFA24354.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
Length = 361
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 211/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGIEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGINCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|327469049|gb|EGF14521.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330]
Length = 362
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F++ + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFAVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|260893173|ref|YP_003239270.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4]
gi|260865314|gb|ACX52420.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4]
Length = 360
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 192/367 (52%), Gaps = 28/367 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L + E+E + + + R R Q+ W++V+G+ F+ M+++ + +R L
Sbjct: 2 KLDLKSLRFPEIESWVTE---ELKEPRYRAQQLIDWLFVKGVTSFREMTNLPKTLRERLE 58
Query: 66 QHFSIIYPEI-VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ SI Y + V T K+L IETV++ T+CVS+QVGC
Sbjct: 59 EIASITYLSVRVKRCSRDGRTIKFLY-----LARDGAGIETVFMRHPWGRTVCVSTQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC +G + L RNL+A EI QVL + LG+ +++++V+
Sbjct: 114 RMGCRFCASGAKGLKRNLSAGEIYEQVLRTQVELGE-----------------RVTHVVL 156
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGMGEP N + + L + GL+ R+IT+ST G VP I + + + LA+SL
Sbjct: 157 MGMGEPFDNQEATFRFLENITHPAGLNIGARKITISTCGVVPGIRALAQLKRQFGLAVSL 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+PINR+YPL+ L+ AC Y ++ RITF Y M+ GIND +A L
Sbjct: 217 HAPRDELRSWLLPINRRYPLKELLAACWEYVEATHR-RITFAYTMIAGINDGQEEARELA 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIPFN + I F ++ +G + +R RG +I AACG
Sbjct: 276 RLLKGLLCHVNLIPFNLVNERRFRPPSPARIEAFCRILEENGIPATVRRSRGEEIEAACG 335
Query: 364 QLKSLSK 370
QL+ +
Sbjct: 336 QLRYRYE 342
>gi|238916657|ref|YP_002930174.1| hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750]
gi|259491988|sp|C4Z523|RLMN_EUBE2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|238872017|gb|ACR71727.1| Hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750]
Length = 350
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 199/365 (54%), Gaps = 29/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + +EL + +G + R Q+++W++ + F +++S +R L +
Sbjct: 2 TDIKSLNYDELVTYMAGLG----EKKFRAGQLYQWMHEKLADSFDECTNLSNALRQKLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ E V + S DGT K+L R +E+V + ++C+SSQVGC
Sbjct: 58 TSEYVCLEPVRVQHSKLDGTEKYLFRLS-----DGNYVESVLMKYHHGNSVCISSQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + VR+L E+L Q+ + + G ++SN+V+M
Sbjct: 113 MGCRFCASTLNGKVRDLRPSEMLDQIYRIQKI-----------------TGERVSNVVVM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
G GEP+ N+DN+ K + + +D GL+ S+R IT+S+ G VP + + + ++ + LAISLH
Sbjct: 156 GSGEPMDNYDNLIKFIELLNDERGLNISQRNITVSSCGIVPKLKELADLKLQITLAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LR ++PI KY +E ++D CR+Y + RRI+FEY ++KG+NDS A LI+
Sbjct: 216 APNDELRKTMMPIANKYSIEEIMDVCRYYIECT-GRRISFEYSLVKGVNDSMECAKQLIE 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++KG+ INLIP NP +Y + ++++ F ++++G + IR G DI ACGQ
Sbjct: 275 LVKGMNCHINLIPVNPIKERDYKQTGKEEVYAFKNKLEKNGINVTIRREMGRDIDGACGQ 334
Query: 365 LKSLS 369
L++
Sbjct: 335 LRNKY 339
>gi|325690223|gb|EGD32227.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115]
Length = 362
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDILKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|324995259|gb|EGC27171.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678]
Length = 362
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQGSADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|309790982|ref|ZP_07685522.1| radical SAM protein [Oscillochloris trichoides DG6]
gi|308226955|gb|EFO80643.1| radical SAM protein [Oscillochloris trichoides DG6]
Length = 375
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 134/382 (35%), Positives = 194/382 (50%), Gaps = 28/382 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ SL M +LE L G P R QI++ +YV D M+D+ Q +R
Sbjct: 1 MDNPSLYAMTLPDLEALLRAWGQPA----FRARQIYRQLYVNLAADPAAMTDLPQALRER 56
Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L ++ +V + S TRK L P V+IETV + R T+CVS+Q
Sbjct: 57 LAHEATLNPLRLVRSQSSADGLTRKALFALP-----DGVQIETVLMIYADRATVCVSTQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG------ 176
GC++ CSFC T T L RNLTA E++ QVL A + G G
Sbjct: 112 GCAMGCSFCATATLGLRRNLTAGEMVAQVLWASREVRSLAVPATQPGHAHSEEGATWWGE 171
Query: 177 --------RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
++SN+V MGMGEP N+D ++ + G + R +T+ST G VP I
Sbjct: 172 ARALRRPLERVSNLVFMGMGEPFANYDRWWDAVQCLHNPQGFNMGARSMTVSTVGLVPGI 231
Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
R+ + + LAISLHA + LRN LVP+N +YP+ ++ A + Y + RR++FEYV
Sbjct: 232 LRLADAGLPINLAISLHAPDDALRNELVPVNTRYPIREVLAAAQTYIEKT-GRRVSFEYV 290
Query: 288 MLKGINDSPRDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
+++G ND P AL L K+L+ + +NLIP+NP PG SD + + F + + G
Sbjct: 291 LIQGRNDHPHQALALAKLLRSQSLICHVNLIPWNPLPGSPLARSDLQRVHAFQQVLVDYG 350
Query: 346 YSSPIRTPRGLDILAACGQLKS 367
+ +R RG++I AACGQL
Sbjct: 351 LACTVRVERGVEIAAACGQLAG 372
>gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter
uraniireducens Rf4]
gi|205829769|sp|A5GEC2|RLMN_GEOUR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens
Rf4]
Length = 343
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 144/371 (38%), Positives = 210/371 (56%), Gaps = 29/371 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K + +ELE + G R R QI+KW+Y + R+F M+++S++ R
Sbjct: 1 MEKVDIKNFTLQELEAYIAGQG----KERFRAKQIFKWLYQQDAREFADMTNLSKDFRQE 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + I + + S DGT+K+L R +E+V IP++ R TLC+SSQVG
Sbjct: 57 LEKTAWISNLDAEAVEASADGTKKYLFRL-----ADGNAVESVLIPDEDRTTLCISSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TGT KL RNLT EI+ QV + + NIV
Sbjct: 112 CAMGCEFCLTGTFKLTRNLTTAEIVNQVCAVKR-------------------QEPVRNIV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N NV +L I +D G FS R++T+STSG VP +A +G + V LA+SL
Sbjct: 153 FMGMGEPLANLKNVVGALKILTDPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+A ++++R+ ++PINR+YPL+ L+ AC+ +P S IT EYVM++G+NDS DA L+
Sbjct: 213 NATTDEVRDRIMPINRRYPLKELLAACKAFPLPSRRW-ITIEYVMIRGVNDSLDDAKRLV 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++ IP+K+NLIPFN GC + Q I F + + + R+ RG DI AACG
Sbjct: 272 RLISNIPSKVNLIPFNEHDGCTFQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACG 331
Query: 364 QLKSLSKRIPK 374
QLK + K
Sbjct: 332 QLKGRLDKAVK 342
>gi|257867066|ref|ZP_05646719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC30]
gi|257873401|ref|ZP_05653054.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC10]
gi|257877144|ref|ZP_05656797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC20]
gi|257801122|gb|EEV30052.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC30]
gi|257807565|gb|EEV36387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC10]
gi|257811310|gb|EEV40130.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC20]
Length = 361
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 129/381 (33%), Positives = 211/381 (55%), Gaps = 28/381 (7%)
Query: 1 MNFLKKES--LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
M KK + + G+ + +L + + Q + R +Q+W+W+Y + + F+ M+++ +
Sbjct: 1 MKRGKKVNPSIYGLTKSDLSLWITE----QNEKKFRANQVWEWLYEKRVTSFEEMTNLPK 56
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
+ L+ F I + + + + DGT K+L + P IETV + ++ ++CV
Sbjct: 57 PLIEKLSAAFVINPLKQMVVQEASDGTVKYLFQLP-----DNHMIETVLMRQEYGMSVCV 111
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
++QVGC++ C+FC +G K R+LTA EI+ Q++L + + + G +
Sbjct: 112 TTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDE------------RNEGER 159
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
+S++V+MG+GEP N+DNV L I +D GL+ R IT+STSG I E V
Sbjct: 160 VSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLAIGARHITVSTSGLAHKIREFAENGLQV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLHA +N++R ++ INR +P+E L+ A +Y +N RITFEY+ML +ND P
Sbjct: 220 NLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNR-RITFEYIMLDHVNDRPE 278
Query: 298 DALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
A L +LK + +NLIP+NP + Y S + D++ F + +K++G + IR
Sbjct: 279 HARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKNGINCVIRKEH 338
Query: 355 GLDILAACGQLKSLSKRIPKV 375
G DI AACGQL+S +
Sbjct: 339 GTDIDAACGQLRSKQMKKEAS 359
>gi|291547144|emb|CBL20252.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus sp. SR1/5]
Length = 346
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 124/373 (33%), Positives = 197/373 (52%), Gaps = 30/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M EEL+E + KIG R QI+ W++ + + + M+++S+ +R L+
Sbjct: 2 TDVKSMTMEELKEFMTKIG----EKPFRAKQIYAWLHQQLVTSWDEMTNLSKSLREKLSA 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I D +IS DGTRK+L + IE+V + ++C+SSQVGC
Sbjct: 58 -YPITALTQADVRISKIDGTRKYLFQLE-----DGNVIESVLMRYHHGNSVCISSQVGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + L R L E+L Q+ + G +++N+V+M
Sbjct: 112 MGCRFCASTIGGLTRCLKPSEMLDQIYRIQ-----------------ADTGERVANVVVM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP+ N+DN+ + + I +D GL S+R +T+ST G VP + + EE + LA+SLH
Sbjct: 155 GTGEPMDNYDNLVRFVRILTDENGLGISQRNVTVSTCGIVPKMYDLAEEKLQITLALSLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++ R L+PI KY ++ ++DACR+Y + RRITFEY ++ G+NDS DA L
Sbjct: 215 APNDEKRQELMPIANKYSMDEVLDACRNYFDKT-GRRITFEYSLVAGVNDSEEDARQLAG 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+KGI +NLIP NP Y+ S ++ + F +++ G + IR G DI ACGQ
Sbjct: 274 RIKGINCHVNLIPVNPIKERSYVRSTRQAVENFKIKLEKYGINVTIRREMGSDIDGACGQ 333
Query: 365 LKSLSKRIPKVPR 377
L+ + +
Sbjct: 334 LRKSYMEKTESEK 346
>gi|327441109|dbj|BAK17474.1| predicted Fe-S-cluster redox enzyme [Solibacillus silvestris
StLB046]
Length = 382
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 200/366 (54%), Gaps = 25/366 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + +E++E L G R +QI++W+Y + ++ F+ MS++ + +R L
Sbjct: 36 KPSVYSLRLDEMKEWLTANG----EKAFRAAQIYEWLYEKRVQTFEEMSNLPKALREKLE 91
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F++ + ++ S DGT K+L + IETV + ++CV++QVGC
Sbjct: 92 AEFALTTLSTIIKQESKDGTIKFLFQLQ-----DGYSIETVLMRHDYGNSICVTTQVGCR 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L R+L A EI+ QV+ + L + ++S+IV+M
Sbjct: 147 IGCTFCASTLGGLKRHLMAGEIVEQVVKVQQQLDE--------------TEERVSSIVIM 192
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+D + L I +D GL+ R IT+STSG VP I +E + + A+SLH
Sbjct: 193 GIGEPFDNYDAMMNFLKIMNDDKGLNIGARHITVSTSGIVPKIYEFADEGMQINFAVSLH 252
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + + R L+PI + Y LE L++A ++Y + RR+TFEY ++ G ND+ A+ L K
Sbjct: 253 APNQEARQKLMPIAKAYKLEELMEAVKYYTKKT-GRRVTFEYGLMSGQNDTEEVAMELAK 311
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++K I +NLIP N P +Y+ + + I F +K G + IR +G DI AACGQ
Sbjct: 312 LIKNIKCHVNLIPINYVPERDYIRTSRSKIFAFERTLKEQGINVTIRREQGADIAAACGQ 371
Query: 365 LKSLSK 370
L++ +
Sbjct: 372 LRAQER 377
>gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
Length = 360
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 130/372 (34%), Positives = 216/372 (58%), Gaps = 26/372 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ +E L + + Q + RT+Q+W+W+Y + + F+ M+++ + + LN
Sbjct: 8 KPSIYGLTKESLSLWMTE----QEEKKFRTNQVWEWLYEKRVATFEEMTNLPKSLVTKLN 63
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I + + + + DGT K+L + P IETV + ++ ++CV++QVGC+
Sbjct: 64 ESFVINPLKQIVLQEASDGTVKYLFQLP-----DNHMIETVLMRQEYGMSVCVTTQVGCN 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+LTA EI+ Q++L + + + G ++S++V+M
Sbjct: 119 IGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDEL------------NAGERVSHVVVM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N++NV + L I +D GL+ R IT+STSG I E V LAISLH
Sbjct: 167 GIGEPFDNYENVMQFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N++R ++ INR +P+E L++A +Y +N RITFEY+ML +ND P A L++
Sbjct: 227 APNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTNR-RITFEYIMLDHVNDRPEHARQLVE 285
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK + +NLIP+NP + Y S ++D++ F + +K++G + IR G DI AA
Sbjct: 286 LLKNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKNGINCVIRKEHGTDIDAA 345
Query: 362 CGQLKSLSKRIP 373
CGQL+S +
Sbjct: 346 CGQLRSKQMKKQ 357
>gi|315221970|ref|ZP_07863881.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
gi|315188936|gb|EFU22640.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
Length = 367
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R++L + + G + R +QIW+W+Y + ++ F M++IS+ + L
Sbjct: 9 KPSIYSLTRQDLIDWVESQG----EKKFRATQIWEWLYRKRVQSFTEMTNISKGLLAKLE 64
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 65 DEFVVNPLKQRVVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 119
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + G ++S+IV+M
Sbjct: 120 IGCTFCASGLIKKQRDLNNGEIMSQIMLVQKYFDE------------RGQGERVSHIVVM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 168 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 228 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 286
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAA 346
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + K
Sbjct: 347 CGQLRSNTMKKDKEK 361
>gi|163786382|ref|ZP_02180830.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium
ALC-1]
gi|159878242|gb|EDP72298.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium
ALC-1]
Length = 346
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 201/367 (54%), Gaps = 24/367 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+KK+ + + +E+L + +K G R +Q+++W++ + F+ M++IS E R +
Sbjct: 3 VKKKDIRALTKEQLRDFFVKQG----DKAFRGNQVYEWLWQKSAHSFEDMTNISLETRQM 58
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F I + ++ + S DGT K +R + +E+V IP +R T CVSSQVG
Sbjct: 59 LEANFVINHIKVDQMQRSSDGTIKNAVRLH-----DDLIVESVLIPTATRTTACVSSQVG 113
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL C FC T K +RNL +EI QV+ + R +SNIV
Sbjct: 114 CSLDCKFCATARLKRMRNLNPDEIYDQVVAI-------------DNESRLYHNRPLSNIV 160
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N++NV K++ + GL S +RI +STSG I ++ ++ LA+S
Sbjct: 161 FMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDKVKFKLAVS 220
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ +D+R ++P N +PL L +A +++ + RIT+EYV+ GIND +D L
Sbjct: 221 LHSAIDDVRTSIMPFNATFPLNDLREALQYWYAAT-KNRITYEYVVWDGINDKRKDVDAL 279
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ K P+K+NLI +NP E+ ++ K + + ++ + + +R RG DI AAC
Sbjct: 280 VEFCKFAPSKVNLIEYNPIDDGEFQQANSKALDMYVNVLEANNITVTVRRSRGKDIDAAC 339
Query: 363 GQLKSLS 369
GQL + S
Sbjct: 340 GQLANKS 346
>gi|210622414|ref|ZP_03293146.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275]
gi|210154230|gb|EEA85236.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275]
Length = 342
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 129/369 (34%), Positives = 196/369 (53%), Gaps = 28/369 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K++L E++E + +IG R +Q++ WIY +G + F M +I + +R
Sbjct: 1 MENKKALKNFTEAEMKEFMKEIG----EKAFRGTQVYSWIY-KGAKTFDDMKNIPKSLRE 55
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + I +I + S DG K L IETV + SR T+CVS+QV
Sbjct: 56 KLEEVSYIGNIDIELKLESKDGKTKKYLFLLN----DGNIIETVMMDYDSRVTVCVSNQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + LVRNL EIL Q++ + G+++SN+
Sbjct: 112 GCRMGCRFCASTMDGLVRNLEPWEILDQIMKIQE-----------------DTGKRVSNL 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V+MG GEPL N+DN K+ L I +D GL+ R ITLST G VP I + + EI + LAI
Sbjct: 155 VLMGSGEPLDNYDNTKQFLKIVNDENGLNIGYRHITLSTCGIVPKIYELADLEIPINLAI 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ ++ R ++P+ KY ++ ++DACR+Y +N R+TFEY ++KG+ND ++A
Sbjct: 215 SLHSPYDEKRKEIMPVANKYSIKEILDACRYYIKKTNR-RVTFEYSLIKGVNDGKKEAEA 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +LKG+ +NLIP N ++ D+ I F + ++ + +R G DI A
Sbjct: 274 LASLLKGMLCHVNLIPINEVDERDFKKPDKAFIYKFRDYLEERNIPATVRISMGSDISGA 333
Query: 362 CGQLKSLSK 370
CGQL+ K
Sbjct: 334 CGQLRRKHK 342
>gi|289167665|ref|YP_003445934.1| hypothetical protein smi_0819 [Streptococcus mitis B6]
gi|288907232|emb|CBJ22067.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 361
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|332361790|gb|EGJ39594.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056]
Length = 362
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEDQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|94268941|ref|ZP_01291330.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
gi|93451405|gb|EAT02257.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
Length = 345
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 153/367 (41%), Positives = 206/367 (56%), Gaps = 22/367 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K L + EL + + + R QI+ W+Y DF M+DI++ V
Sbjct: 1 MNN-PKTDLKNLTLPELTAWVETLNL----KPFRARQIFSWLYRPDFSDFAQMTDIAKHV 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LL + + E+ S DGT K+ R IE+V IPE+ R TLCVSS
Sbjct: 56 RALLAEKATFSRLAAAKEEHSTDGTVKFAFRLS-----DGHLIESVLIPEEDRHTLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C+FC TGT +RNLT E++ QV A L +++
Sbjct: 111 QVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVDQAAHWLWQRGARSG-----------RLN 159
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V MGMGEPL NFDN+ K+++I + G S RRIT+ST G VP + +GE++ V LA
Sbjct: 160 NLVFMGMGEPLLNFDNLIKAINILMEQRGHDLSGRRITVSTCGIVPRMKELGEKVPVNLA 219
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + R L+P+NR YPL L+ ACR YP L RRI EY +L GINDSP A
Sbjct: 220 VSLHAADHATREQLMPVNRTYPLAELLQACRQYP-LPPRRRIMIEYALLAGINDSPAAAR 278
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+K L GI KIN++PFN P Y C D I F + ++R+G+++ +RT RG DI A
Sbjct: 279 LLVKQLHGIRCKINILPFNETPAFPYRCPDPATIEAFRQILRRAGHTTLLRTSRGADIAA 338
Query: 361 ACGQLKS 367
ACGQL +
Sbjct: 339 ACGQLAA 345
>gi|306825018|ref|ZP_07458361.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432845|gb|EFM35818.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 361
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 211/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGINCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
gi|205829924|sp|A5CX33|RLMN_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
Length = 356
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 153/373 (41%), Positives = 211/373 (56%), Gaps = 24/373 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K++L+ + ++ L + + +G RT QI +WIY DF M + S+ +R
Sbjct: 1 MNKQNLLSLNQDALNDFFVCLG----EKHYRTKQIMQWIYKVHEFDFDKMFNFSKSLREE 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
LN+ I +P++V +K + D KW+L IE VYIPEK RGTLC+SSQVG
Sbjct: 57 LNKIACIEFPKVVKQKFALDKVIKWVLALSEDNY-----IEMVYIPEKDRGTLCISSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L C+FC TG Q +NLT EI+ QVL+A L S ++ISNIV
Sbjct: 112 CALACTFCSTGMQGFNKNLTTAEIIAQVLIANKYLN--------------SKTKRISNIV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N V + + D + S+R++T+STSG VP+I R+ + V LAISL
Sbjct: 158 FMGMGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTPVSLAISL 217
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNL 302
HA +N LR+ LVP+N+KY +E L+ AC+ Y R I FEYVMLK +NDS A L
Sbjct: 218 HAPNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHANKL 277
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K+LK I AK+NLIPFN + +Y S+ + I F + + + G + +R RG DI AC
Sbjct: 278 AKLLKAISAKVNLIPFNSFERTQYQSSNAQTIEKFQDILYQQGIRTMMRRTRGEDIDGAC 337
Query: 363 GQLKSLSKRIPKV 375
GQL K
Sbjct: 338 GQLAGKVLNKTKK 350
>gi|322376321|ref|ZP_08050814.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334]
gi|321282128|gb|EFX59135.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334]
Length = 361
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|146321533|ref|YP_001201244.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis
98HAH33]
gi|253752360|ref|YP_003025501.1| radical SAM superfamily protein [Streptococcus suis SC84]
gi|253754186|ref|YP_003027327.1| radical SAM superfamily protein [Streptococcus suis P1/7]
gi|253756120|ref|YP_003029260.1| radical SAM superfamily protein [Streptococcus suis BM407]
gi|205829908|sp|A4W3A5|RLMN_STRS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145692339|gb|ABP92844.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 98HAH33]
gi|251816649|emb|CAZ52290.1| radical SAM superfamily protein [Streptococcus suis SC84]
gi|251818584|emb|CAZ56418.1| radical SAM superfamily protein [Streptococcus suis BM407]
gi|251820432|emb|CAR47102.1| radical SAM superfamily protein [Streptococcus suis P1/7]
gi|292558962|gb|ADE31963.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis GZ1]
gi|319758764|gb|ADV70706.1| Fe-S-cluster redox protein [Streptococcus suis JS14]
Length = 370
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 129/373 (34%), Positives = 211/373 (56%), Gaps = 26/373 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + L + +L+ G + R +QIW+W+Y ++ F M+++ + + L
Sbjct: 2 KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EHFVVNPLKQRIVQESKDGTIKYLFELP-----DGMLIETVLMHQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G R+LT+ EI+ Q++L + L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEPL N+DNV L + +D GL+ R IT+STSG P I E + V LA+SLH
Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFAREGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INRK+P+E+L +A Y ++N R+TFEY+ML +ND A L
Sbjct: 221 APNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPK 374
CGQL+S + + +
Sbjct: 340 CGQLRSNTLKKDR 352
>gi|315613373|ref|ZP_07888282.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
gi|315314608|gb|EFU62651.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
Length = 361
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN
Sbjct: 2 KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|312867068|ref|ZP_07727278.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0405]
gi|311097197|gb|EFQ55431.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0405]
Length = 362
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 126/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+++ + + G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|224541738|ref|ZP_03682277.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM
15897]
gi|224525342|gb|EEF94447.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM
15897]
Length = 343
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 128/370 (34%), Positives = 206/370 (55%), Gaps = 30/370 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +S+ + E+L+E L +G R QI++WIYV+ + DF M+++S+E++
Sbjct: 1 MM--KSIYDLTLEQLKEELKAMG----QKPFRAKQIYEWIYVKNVYDFHQMTNLSKELQE 54
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L+ HFS I +++++ DGT K+LL IETV + + +LCV+SQ+
Sbjct: 55 TLSNHFSDALLTIKEKQVARDGTTKYLLELEDGG-----LIETVLMIQTYGRSLCVTSQL 109
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ CSFC +G K RNLT+ EI+ QVL + L + +++++
Sbjct: 110 GCNMGCSFCASGLLKKQRNLTSGEIVKQVLTVMNDLKE-----------------RVTHV 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEP N+D V + ++ GL+ R +T+ST G +P I R E V LAI
Sbjct: 153 VVMGTGEPFDNYDEVMNFIYTVNEPHGLAIGARHLTISTCGLIPGIERFSHEPIQVNLAI 212
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++++RN L+PIN++Y ++ L DA + Y +N R+T EY++LK +ND + A
Sbjct: 213 SLHAPNDEIRNELMPINKRYNMDDLRDAIKTYIERTNR-RVTLEYILLKDVNDDIKYARQ 271
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L L+G+ +NLIP+NP Y S I F + + R + +R G DI A
Sbjct: 272 LAHYLRGLNVYVNLIPYNPVDEHGYKQSLGHTITAFKDELIRLHINCTLRKEHGRDIDGA 331
Query: 362 CGQLKSLSKR 371
CGQL++ ++
Sbjct: 332 CGQLRAKREK 341
>gi|302386502|ref|YP_003822324.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
gi|302197130|gb|ADL04701.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
Length = 350
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 124/365 (33%), Positives = 205/365 (56%), Gaps = 29/365 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K + + E+L + IG R Q+++W++ + DF M+++ ++
Sbjct: 1 MEKIDIKSLNMEQLTAYVAAIG----EKTFRAKQLYEWMHQKLAADFNEMTNLPNSLKET 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L Q + IV+EKIS DGTRK+L IE+V + K ++C+SSQV
Sbjct: 57 LFQQTELTSLAIVEEKISNIDGTRKYLFALS-----DGNVIESVLMKYKHGNSVCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + L RNL+ E+L Q+ + + G ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLERNLSPSEMLDQIYRIQK-----------------NTGERVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N+D++ + + + +D GL+ S+R IT+ST G VP I ++ EE + LA+
Sbjct: 155 VVMGSGEPLDNYDHLVQFVRLLTDENGLNISQRNITVSTCGIVPGILKLAEEDLQITLAL 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++++R L+P+ ++PL+ ++DAC+ Y + RR+TFEY ++ G+ND+ ++A
Sbjct: 215 SLHAPNDEVRKTLMPVANRFPLKDVLDACQTYFEKT-GRRLTFEYSLVSGVNDNLKEASA 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +LKG +NLIP NP ++ SD+K I F ++++G + IR G DI A
Sbjct: 274 LAALLKGQHGHVNLIPVNPIKERNFVQSDRKAIEAFKNLLEKNGINVTIRREMGRDINGA 333
Query: 362 CGQLK 366
CGQL+
Sbjct: 334 CGQLR 338
>gi|309800021|ref|ZP_07694219.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
gi|308116341|gb|EFO53819.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
Length = 357
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 124/376 (32%), Positives = 210/376 (55%), Gaps = 26/376 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQGMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLISKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVPR 377
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQKS 355
>gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|205829911|sp|A0LQM1|RLMN_SYNFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 342
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 149/366 (40%), Positives = 215/366 (58%), Gaps = 25/366 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++ + ELEE + IG R Q+++ +Y RG+R + SD+S+ R
Sbjct: 1 MEPVCVKDFTLPELEEWVQGIG----ERSFRARQLFRHVYGRGVRSWSECSDLSRMFRVQ 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + ++ ++ + DGT K+L IE V IP+ R TLCVSSQVG
Sbjct: 57 LEHGVELDALSVLKKEQADDGTSKYLFGLR-----DGHSIEAVLIPDLPRSTLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L C FC TG+ RNL+A EI+ QV + LG +I+NIV
Sbjct: 112 CALGCKFCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRS---------------RITNIV 156
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N D+V +++ + ++ G++FS RRITLST+G VP + R+G E V LA+SL
Sbjct: 157 FMGMGEPLANLDSVLRAIRVIAEPNGMAFSHRRITLSTAGLVPQLRRLGRESPVNLAVSL 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA N+LR L+P+NR YPLE+L+ ACR YP L +RITFEY++L GIND P+ A L+
Sbjct: 217 HAAENELRAELMPVNRTYPLEVLMAACREYP-LPPRKRITFEYILLDGINDDPKQAKQLV 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L GI AK+NL+PFNP PG + ++ ++ F E ++ + ++ +R RG +I AACG
Sbjct: 276 KLLHGIRAKVNLMPFNPHPGSVFRKPSEQRVLAFQEALQNARITTHVRRSRGGEIGAACG 335
Query: 364 QLKSLS 369
QL +
Sbjct: 336 QLVAEY 341
>gi|307706322|ref|ZP_07643134.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
gi|307708956|ref|ZP_07645416.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
gi|307618240|gb|EFN97395.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
gi|307620292|gb|EFN99408.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
Length = 361
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|325688196|gb|EGD30215.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72]
Length = 362
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 126/375 (33%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+++ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQDMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQNERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
Length = 358
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 141/379 (37%), Positives = 214/379 (56%), Gaps = 32/379 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KE++ + +EEL E + R QI++W+Y + + F M ++ +E++
Sbjct: 1 MEKENIFDLSKEELSEVIK--------PAFRAKQIYQWLYQKYVTSFDEMKNLPKELKEQ 52
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGT 115
LN+ + + IV + SCDG++K+L V + + +R T
Sbjct: 53 LNETYYLDPLRIVTIEESCDGSKKYLFALKDNQTVEAVLLPMKQEQVDEEGKLVHHARYT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C+SSQVGC + C+FC TG RNLTA EI QVL+ + +
Sbjct: 113 ICISSQVGCKIGCAFCLTGKSGFKRNLTAGEITTQVLMIKRD-------------NAIAE 159
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EE 234
R++ NIV MGMGEPL N NV K++ I SD GLS S RR T+STSG I ++G +
Sbjct: 160 NRRV-NIVYMGMGEPLDNLTNVSKAVRIFSDLDGLSISPRRQTISTSGLSSQIEKLGKMD 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+G++LAISLHAV +DLR L+PIN+ Y +E +++A R +P + +R+ FEY+++KG+ND
Sbjct: 219 LGILLAISLHAVDDDLRQKLMPINKAYNIESIMNAVRGFP-IDARKRVMFEYLVMKGVND 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
+ A L+K+L GI AK+NLI FNP G ++ KD++ F + + G IR +
Sbjct: 278 DQKSAKKLVKLLHGIKAKVNLIYFNPHAGSDFDRPSTKDMIAFQQYLVDHGVLCTIRQSK 337
Query: 355 GLDILAACGQLKSLSKRIP 373
GLDI AACGQLK ++
Sbjct: 338 GLDISAACGQLKDKEQKND 356
>gi|326798558|ref|YP_004316377.1| ribosomal RNA large subunit methyltransferase N [Sphingobacterium
sp. 21]
gi|326549322|gb|ADZ77707.1| Ribosomal RNA large subunit methyltransferase N [Sphingobacterium
sp. 21]
Length = 379
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 24/373 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N KK + + E+L+E+LL +G R QI++W++++ DF M+++S+++R
Sbjct: 28 NMGKKVDIRSLSLEQLKESLLALG----EQSFRAKQIFEWLWMKSCVDFDNMTNLSKKLR 83
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L ++F I I + S D T K + IE V IP R T CVSSQ
Sbjct: 84 DSLKENFIINAVRIDKSQYSADKTIKSTFKL-----FDNNIIEGVLIPTPDRMTACVSSQ 138
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGCSLTC FC TG RNL A+EI QV+L + + +SN
Sbjct: 139 VGCSLTCKFCATGYMDRKRNLNADEIYDQVVLINKQAEE-------------NYSIPLSN 185
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
IV MGMGEPL N+ NV KS+ + GL+ + +RIT+ST+G I ++G++ LA
Sbjct: 186 IVYMGMGEPLLNYANVLKSIERITAPDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLA 245
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ RN ++PIN + L+ L +A ++Y + +T+EY++ ND DA
Sbjct: 246 LSLHAANDAKRNEIMPINEQNSLKALAEALKYYFAKT-KNPVTYEYIVFNNFNDELEDAA 304
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K +P K+N+I +NP ++ ++ I F+ +++ G ++ +R RG DI A
Sbjct: 305 ELASFCKHLPCKVNIIEYNPIAFADFENAEGDKIDRFAAFLRKRGITTNVRRSRGKDIDA 364
Query: 361 ACGQLKSLSKRIP 373
ACGQL K+
Sbjct: 365 ACGQLAVKEKQEQ 377
>gi|322392191|ref|ZP_08065652.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780]
gi|321144726|gb|EFX40126.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780]
Length = 361
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQGMQEWILEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRAFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVTEHDQYSRSPKERVMAFYDTLKKHGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017]
Length = 340
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 151/346 (43%), Positives = 201/346 (58%), Gaps = 19/346 (5%)
Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG 98
KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW +
Sbjct: 2 MKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD---- 57
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
+ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++
Sbjct: 58 --QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIV 115
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
G + R I+N+VMMGMGEPL N +NV ++ I D G SKRR+T
Sbjct: 116 G----------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVT 165
Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
LSTSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y SN
Sbjct: 166 LSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSN 225
Query: 279 AR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
A R+T EYVML +ND A L ++LK P KINLIP+NP+P Y S I
Sbjct: 226 ANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDR 285
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381
FS+ + G+++ +R RG DI AACGQL R + R+ MQ
Sbjct: 286 FSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 331
>gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 342
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 136/368 (36%), Positives = 200/368 (54%), Gaps = 30/368 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L +
Sbjct: 3 NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I ++ ++S D T K+L + IE V I + T CVS+QVGC++
Sbjct: 59 AYISQLKVEARRVSEIDNTVKYLFLLEDKN-----IIEGVAIKYRFGNTACVSTQVGCNM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC + VR+L A E++ QV+ S G KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMSIDSDYG------------------KISNIVLMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N++ V K + I ++ GL R IT+ST G +P I + +E V L+ISLHA
Sbjct: 156 SGEPFDNYEEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ +NLIP N + + + ++ F + I+ +G S +R G DI AACGQL
Sbjct: 275 LQGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334
Query: 366 KSLSKRIP 373
+ +
Sbjct: 335 RRKYLKER 342
>gi|315651136|ref|ZP_07904168.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986]
gi|315486601|gb|EFU76951.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986]
Length = 352
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 203/369 (55%), Gaps = 31/369 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ + M EEL+ + IG P R Q+++W++ I F +++S+ R
Sbjct: 1 MM--TDIKSMDFEELKTFVKDIGEPA----FRAKQLFEWMHKLLIESFDECTNLSKAFRE 54
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+L + ++V+ S D TRK+L IE+V + + ++C+SSQ
Sbjct: 55 ILKSQVILTRLKMVEVFTSKIDDTRKYLFALS-----DGNIIESVRMKYEHGNSVCISSQ 109
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C FC + LVRNLT E+L QV + +LG+ ++SN
Sbjct: 110 VGCRMGCKFCASTLDGLVRNLTTAEMLDQVYSIQRILGE-----------------RVSN 152
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
IV+MG GEPL N+DN+ K + I S MGL+ S+R IT+ST G VP I ++ +E + LA
Sbjct: 153 IVVMGSGEPLDNYDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLA 212
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++++R ++P+ KY L+ +I AC +Y + RR+++EY ++ G+ND+ +A
Sbjct: 213 LSLHAPNDEIRKTIMPVANKYALKDIIAACDYYFKKT-GRRVSYEYSLVAGVNDNMEEAK 271
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+L++++ G INLIP NP ++ SD+ I F + +++ G ++ IR G DI
Sbjct: 272 SLVRLVNGRNIHINLIPVNPIKERDFKQSDKLKIKAFRDFLEKKGVNATIRREMGRDIDG 331
Query: 361 ACGQLKSLS 369
ACGQL+
Sbjct: 332 ACGQLRRRF 340
>gi|124007524|ref|ZP_01692229.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134]
gi|123987007|gb|EAY26763.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134]
Length = 350
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 192/368 (52%), Gaps = 24/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+ + ++ L G R QI+ W++ + F+ M+++S ++R +L
Sbjct: 6 QKQDIRKFSVADISSFLASKG----EKAFRAKQIYAWLWQKSANSFEEMTNLSLKLREML 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
HF I + ++IS D T K + IE V IP K R T CVSSQVGC
Sbjct: 62 QAHFDITALTVDQQQISNDQTIKSTFKLY-----DNHIIEGVLIPAKDRMTACVSSQVGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SLTC FC TG RNL EI QV+ + + + ++NIV
Sbjct: 117 SLTCKFCATGYMSRKRNLEPGEIYDQVVAIARQAEE-------------NYEQPLTNIVY 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N+ NV KS+ + GL+ S +RIT+ST+G I ++G++ LA+SL
Sbjct: 164 MGMGEPLLNYANVLKSVEHITSPEGLNMSPKRITISTAGIAKMIRKLGDDEVKFNLALSL 223
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++ RN ++PIN L L DA ++Y + R+T+EY++ NDS +DA L
Sbjct: 224 HAANDEKRNEIMPINESNTLVALRDALKYYFQKT-KNRVTYEYIVFHNFNDSLKDAEELY 282
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ + +P K+N+I +NP +++ + + + F++ ++ G +R RG DI AACG
Sbjct: 283 RFTRHLPCKVNIIEYNPIAEADFVNTKEDKLAKFAKYLEGKGVIVNVRRSRGKDIDAACG 342
Query: 364 QLKSLSKR 371
QL ++
Sbjct: 343 QLAIKEEK 350
>gi|86134466|ref|ZP_01053048.1| radical SAM superfamily protein [Polaribacter sp. MED152]
gi|85821329|gb|EAQ42476.1| radical SAM superfamily protein [Polaribacter sp. MED152]
Length = 345
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 119/367 (32%), Positives = 200/367 (54%), Gaps = 24/367 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+KK+ + + +E+L + ++ G R +Q+++W++ + + F+ M++IS++ R
Sbjct: 1 MIKKKDIRALTKEQLRDFFVENG----DKAFRGNQVYEWLWSKSLHTFEDMTNISKKTRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L +HF I + ++ + S DGT K ++ + +E+V IP R T CVSSQV
Sbjct: 57 MLEEHFVINHIKVDSMQKSADGTIKNGIKLH-----DGLVVESVLIPTPKRTTACVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCSL C FC T K +RNL +EI QV++ + K++NI
Sbjct: 112 GCSLDCKFCATARLKRMRNLNPDEIYDQVVVI-------------DKQSRLYHNHKLTNI 158
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEPL N+ NV KS+ + + GL S +RIT+STSG I ++ +E LA+
Sbjct: 159 VFMGMGEPLMNYKNVLKSIEMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAV 218
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ +++R ++P N +PL+ L ++ ++ + IT+EYV+ +GIND D
Sbjct: 219 SLHSAIDEVRTSIMPFNTTFPLKDLKESLEYWYEKTKR-AITYEYVVWEGINDKKEDIAA 277
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L++ K +P K+NLI +NP ++ + + + ++ + +R RG DI AA
Sbjct: 278 LVQFCKYVPCKVNLIEYNPIDDGQFQQASNAALNNYISNLEMHDITVNVRRSRGKDIDAA 337
Query: 362 CGQLKSL 368
CGQL +
Sbjct: 338 CGQLANK 344
>gi|322375441|ref|ZP_08049954.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
gi|321279704|gb|EFX56744.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
Length = 361
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIEKTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|94990786|ref|YP_598886.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS10270]
gi|123257976|sp|Q1JG02|RLMN_STRPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|94544294|gb|ABF34342.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10270]
Length = 359
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 129/375 (34%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 2 KPSIYSLTRDELIEWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + D G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L
Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSKTMKKDREK 354
>gi|229826168|ref|ZP_04452237.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC
49176]
gi|229789038|gb|EEP25152.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC
49176]
Length = 348
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 115/371 (30%), Positives = 194/371 (52%), Gaps = 29/371 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ ++ + +EL + ++G P RT QI++WI+ + ++ + M+++ +R+ L+
Sbjct: 5 RNDIVSLNFDELASLIKELGEPA----FRTKQIYEWIHKKLVKGYDEMTNVPLALRNKLS 60
Query: 66 QHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ V K S T K++ + IE+V + + ++C+SSQVGC
Sbjct: 61 ERLPFPELTEVARKDSASGDTSKFVFKLY-----DGYVIESVLMKYRYGNSVCISSQVGC 115
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L R L E+L Q+ + G ++SN+V+
Sbjct: 116 RMGCTFCASTLLGLSRQLAPSEMLSQIYTIQR-----------------ETGERVSNVVV 158
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG GEPL NFDN+ K + + +D GL+ S+R IT+ST G NI R+ ++ + LAISL
Sbjct: 159 MGTGEPLDNFDNLIKFIELLTDEKGLNISQRNITVSTCGLTENIKRLADKKFAITLAISL 218
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++ R ++PI KY + +++A +Y + RRI++EY ++ G ND+P +A L
Sbjct: 219 HAPTDEDRKRIMPIANKYTISEIMEATDYYFDKT-GRRISYEYSLIDGENDTPENAEKLA 277
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+LKG +NLIP NP Y S K ++ F + ++ G + IR G DI AACG
Sbjct: 278 VLLKGKNCHVNLIPVNPIKERTYRSSTPKGVIRFKKILENRGINVTIREEMGQDIDAACG 337
Query: 364 QLKSLSKRIPK 374
QL+ +
Sbjct: 338 QLRKEYMENTE 348
>gi|167464611|ref|ZP_02329700.1| Radical SAM family enzyme [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322384327|ref|ZP_08058025.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae
subsp. larvae B-3650]
gi|321150829|gb|EFX44266.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae
subsp. larvae B-3650]
Length = 343
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 205/366 (56%), Gaps = 26/366 (7%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ ++ + L + G P R QI+ W+YV+ + D MS++S+ +R + +F
Sbjct: 2 YDLTYDDWKTWLKENGEPA----FRADQIFDWLYVKRVTDVNQMSNLSKALREKIKTNFE 57
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+ + + + S DGT K+L + IETV + ++CV++QVGC + C+
Sbjct: 58 FVVLKEIANQRSQDGTVKFLFELSDKNA-----IETVIMKHNYGNSVCVTTQVGCRVGCT 112
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC + L R+L+A EI+ Q++ A+ LL + ++S+IV+MG+GE
Sbjct: 113 FCASTLGGLKRDLSAGEIVAQIVKAQKLLDE--------------TDERVSSIVIMGIGE 158
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
P N++ + K L I D GL +R IT+STSG VPNI R +E + LAIS+HA ++
Sbjct: 159 PFENYEAMMKFLKIMIDPKGLHIGQRHITVSTSGIVPNIYRFADEKTQINLAISIHAPND 218
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
LR+ L+P+NR++P LI+AC++Y + RRITFEY ++ G+ND A L ++L+
Sbjct: 219 ALRSKLMPVNRRFPFADLIEACKYYTQ-TTGRRITFEYALMGGVNDQAEHAEELAQVLQQ 277
Query: 309 IP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
P +NLIP N +Y+ + ++DI F ++R+ ++ IR +G DI AACGQL++
Sbjct: 278 FPMCHVNLIPVNYVMERKYVRTPREDIFNFQRILERNKINATIRREQGSDIAAACGQLRA 337
Query: 368 LSKRIP 373
Sbjct: 338 KHMDRK 343
>gi|225569231|ref|ZP_03778256.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM
15053]
gi|225162030|gb|EEG74649.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM
15053]
Length = 356
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 124/378 (32%), Positives = 201/378 (53%), Gaps = 29/378 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+ + +L+ + +G R+ QI++W++VR F M+++S+++R
Sbjct: 1 MIKKDICSYDHGQLKNEIEAMG----EKSFRSRQIYEWLHVRLADSFDEMTNLSKKLREQ 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L+ + I + + +IS D T K+L R +E+V + ++C+SSQ
Sbjct: 57 LSAEYEIREVTLTERQISSVDPTEKFLFRLC-----EGNMVESVLMRYSYGNSVCISSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + L+RNLT E+L Q+ + L+G+ +ISN+
Sbjct: 112 GCRMGCRFCASTLDGLMRNLTPSEMLRQIYQIQKLIGE-----------------RISNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N+DN + + + SD GL+ S+R IT ST G VPN+ R+ EE + LA+
Sbjct: 155 VVMGTGEPLDNYDNFLQFIRMVSDEHGLNISQRNITASTCGIVPNMRRLAEEDLQITLAL 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH + + R L+P+ KY L +++AC +Y + RRITFEY +++G+ND P D
Sbjct: 215 SLHGSTQEKRKALMPVANKYELAEVLEACDYYFEKT-GRRITFEYSLVQGVNDQPEDVRE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +LK +NLIP NP ++ D K+ F ++++G + IR RG DI A
Sbjct: 274 LTALLKRRNCHLNLIPVNPIKERNFVRPDSKNAHEFKNKLEKNGINVTIRRERGSDIDGA 333
Query: 362 CGQLKSLSKRIPKVPRQE 379
CGQL+ + + E
Sbjct: 334 CGQLRRRYTAVTEGESDE 351
>gi|325694144|gb|EGD36062.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150]
Length = 362
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 207/372 (55%), Gaps = 26/372 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIP 373
CGQL+S + +
Sbjct: 340 CGQLRSNTMKRD 351
>gi|325105966|ref|YP_004275620.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM
12145]
gi|324974814|gb|ADY53798.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM
12145]
Length = 351
Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 189/365 (51%), Gaps = 24/365 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + E L +++ R +QI++WI+ + F M++IS+++R L
Sbjct: 7 KLDIRSFSLENLRSKFIEL----NEKPFRANQIYEWIWKKSATTFDEMTNISKDLRDKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I +I + S D T K IE V IP R T CVSSQVGCS
Sbjct: 63 EIFVINAVKINSSQFSSDKTIKNSFILHDT-----HLIEGVLIPTPERMTACVSSQVGCS 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTC FC TG RNL +EI QV+L + + G ++NIV M
Sbjct: 118 LTCKFCATGYMDRKRNLNPDEIYDQVVLIDKQAKE-------------NYGIPLTNIVYM 164
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N+ NV KS+ + GL+ + +RIT+ST+G I ++G++ LA+SLH
Sbjct: 165 GMGEPLLNYANVLKSIERITSEDGLNMASKRITVSTAGIAKMIKKLGDDNVKFNLALSLH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ RN ++PIN + L+ L +A +++ + +T+EY++ ND DA L K
Sbjct: 225 AANDQKRNEIMPINEQNSLQALAEALKYFYAKT-KNPVTYEYIVFNDFNDGIEDARELAK 283
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K IP K+N+I +NP ++ + + I F+E +++ G ++ IR RG DI AACGQ
Sbjct: 284 FCKHIPCKVNIIEYNPISFADFANAQEDKIEAFAEHLRKQGVTTNIRRSRGKDIDAACGQ 343
Query: 365 LKSLS 369
L
Sbjct: 344 LAVKE 348
>gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [NC10
bacterium 'Dutch sediment']
Length = 372
Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats.
Identities = 151/369 (40%), Positives = 215/369 (58%), Gaps = 26/369 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K L G+ EE+E + G P R Q++ WIY R F M+D+ +R L
Sbjct: 20 NKIDLKGLSLEEMERVVSDHGEPV----YRGRQLFHWIYARDAHTFAEMTDLPIALRARL 75
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+H +I + ++IS DGTRK+LL +IETV IP++ R T C+S+QVGC
Sbjct: 76 AEHTAIGALTPLAKEISRDGTRKYLL-----GCTDERQIETVLIPDERRLTACLSTQVGC 130
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C+FC TG VR+L + E++ QVL + L G +I N+V+
Sbjct: 131 ALACAFCLTGKMGFVRHLQSGEVVDQVLALQRDL---------------QPGERIGNLVL 175
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N+D K+L+I S MGL++ RRITLST G VP I R+G+ GV LA+SL
Sbjct: 176 MGMGEPLHNYDATVKALTILSHPMGLAYPPRRITLSTVGLVPEIVRLGQSGLGVNLAVSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR+ LVPINR+YPL+ L+ A R YP L + RR+TFEYV++ G+ND DA L+
Sbjct: 236 HASTDELRDRLVPINRRYPLKELMVALRAYP-LPSRRRLTFEYVLIDGVNDRSEDARELV 294
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ K+NL+ N P + Q+ + F ++ + + IR RGLDI AACG
Sbjct: 295 KLLRGLRCKVNLLSLNEAPAIPFRRPSQERVEMFQRILRSADILATIRESRGLDISAACG 354
Query: 364 QLKSLSKRI 372
L + +
Sbjct: 355 LLATEPDQK 363
>gi|218132885|ref|ZP_03461689.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC
43243]
gi|217991758|gb|EEC57762.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC
43243]
Length = 360
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 114/370 (30%), Positives = 195/370 (52%), Gaps = 29/370 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+ M E+ E ++ +G + R QI++W++ + + + M+++ +R L
Sbjct: 7 DIKSMTPSEVSELIVSLG----DKKFRAKQIYQWMHQKLVASYDEMTNVPAALRQKLAAE 62
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + E V +IS DGTRK+L R IE+V + ++C+SSQVGC +
Sbjct: 63 YPLTVLEPVRVQISQIDGTRKYLFRLS-----DGNLIESVLMKYHHGNSVCISSQVGCRM 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + LVR L E+L Q+ + +G+ ++ N+V+MG
Sbjct: 118 GCRFCASTIDGLVRGLLPSEMLEQIYRIQKDIGE-----------------RVDNVVVMG 160
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP NFDN+ + + + ++ GL+ S R +T+ST G VP I + + + LAISLH+
Sbjct: 161 SGEPFDNFDNLLRFIELLNNEEGLNISARNLTVSTCGIVPKIYELADMQPQITLAISLHS 220
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR ++P+ KY ++ ++ ACR+Y + RRITFEY ++K +ND+ A+ L+ +
Sbjct: 221 PNDELRRSIMPVANKYSIDEIMKACRYYVEKT-GRRITFEYSLVKDVNDTDECAMQLVHL 279
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KGI +NLIP NP +Y + Q + F +++ G ++ +R G DI ACGQL
Sbjct: 280 VKGIKCHVNLIPVNPIKERDYKQTAQAGVSHFRSRLEKCGVNATVRREMGRDIDGACGQL 339
Query: 366 KSLSKRIPKV 375
+
Sbjct: 340 RRSYMESTDS 349
>gi|227539135|ref|ZP_03969184.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC
33300]
gi|300770634|ref|ZP_07080513.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC
33861]
gi|227240817|gb|EEI90832.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC
33300]
gi|300763110|gb|EFK59927.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC
33861]
Length = 352
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 126/367 (34%), Positives = 197/367 (53%), Gaps = 24/367 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + ++L++ L+++G R QI++W++ + DF MS++S+ +R L
Sbjct: 8 IDIRSLTLDQLKQKLVEMG----EQGFRAKQIYEWLWQKSCTDFDEMSNLSKALRDTLKA 63
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F+I + + ++S D T K IE V IP R T CVSSQVGCSL
Sbjct: 64 NFAINAVTVKESQVSSDRTIKSSFWLY-----DNNVIEGVLIPTTDRMTACVSSQVGCSL 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TC FC TG RNL A+EI QV+L + G+ ++NIV MG
Sbjct: 119 TCKFCATGYMDRKRNLNADEIYDQVVLISKQAEE-------------KYGQPLTNIVYMG 165
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
MGEPL N+ N+ KS+ + GL+ + +RIT+ST+G I ++G++ + LA+SLHA
Sbjct: 166 MGEPLLNYANMMKSVERITSPDGLNMAAKRITVSTAGIAKMIKKLGDDGVKFNLALSLHA 225
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ RN ++PIN + L+ L +A +++ L ITFEY++ ND DA L +
Sbjct: 226 ANDQKRNEIMPINEQNTLKALAEALKYFY-LKTKSPITFEYIVFNNFNDELEDAKELARF 284
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
K +P+K+NLI +NP ++ +D I F+E ++ G + +R RG DI AACGQL
Sbjct: 285 CKHVPSKVNLIEYNPISLADFTNADADKIDVFAEYLRSQGIITNVRRSRGKDIDAACGQL 344
Query: 366 KSLSKRI 372
+
Sbjct: 345 AIKEEEA 351
>gi|223934018|ref|ZP_03625972.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591]
gi|302024309|ref|ZP_07249520.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis
05HAS68]
gi|330833298|ref|YP_004402123.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3]
gi|223897307|gb|EEF63714.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591]
gi|329307521|gb|AEB81937.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3]
Length = 370
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 129/373 (34%), Positives = 211/373 (56%), Gaps = 26/373 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + L + +L+ G + R +QIW+W+Y ++ F M+++ + + L
Sbjct: 2 KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EHFVVNPLKQRIVQESKDGTIKYLFELP-----DGMLIETVLMHQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G R+LT+ EI+ Q++L + L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEPL N+DNV L + +D GL+ R IT+STSG P I E + V LA+SLH
Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFACEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INRK+P+E+L +A Y ++N R+TFEY+ML +ND A L
Sbjct: 221 APNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPK 374
CGQL+S + + +
Sbjct: 340 CGQLRSNTLKKDR 352
>gi|255525649|ref|ZP_05392582.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
gi|296185409|ref|ZP_06853819.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
gi|255510635|gb|EET86942.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
gi|296050243|gb|EFG89667.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
Length = 349
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 202/368 (54%), Gaps = 29/368 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ + EEL++ + G R Q++ WIY DF+ M ++ + + L +
Sbjct: 3 NILDLSLEELKQWMKDNG----ESEFRAKQVFHWIYKNNQWDFEKMDNLPKGTKEKLIKC 58
Query: 68 FSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I P+I++ S + K+L + IETV + K ++CVS+QVGC +
Sbjct: 59 FEIDIPQIIEVYKSENDDTHKFLYEYK-----DGNIIETVVMKYKHGNSICVSTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + + +VRNL++ EI+ Q+L A+ +G+ +ISNIV+MG
Sbjct: 114 GCKFCASTVEGMVRNLSSGEIIAQILKAQEKIGE-----------------RISNIVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
GEPL N++NV K LS+ + L+ +R ITLST G VP I + + + + LAISLHA
Sbjct: 157 SGEPLDNYENVIKFLSLVNAEYCLNIGQRHITLSTCGIVPKIKELADKDYQITLAISLHA 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR ++PI KY + +I+AC++Y +N RITFEY ++K +NDS + A L+K+
Sbjct: 217 ANDELRKTMMPIANKYSINEIIEACKYYISKTNR-RITFEYALVKDVNDSAQSAEELVKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGI +NLIP N + S +I FS + + G + IR G DI AACGQL
Sbjct: 276 LKGILCHVNLIPVNKVRENNFEKSPTNNIKNFSNILIKKGIETTIRREMGSDINAACGQL 335
Query: 366 KSLSKRIP 373
+ +
Sbjct: 336 RRSYLKSK 343
>gi|239626555|ref|ZP_04669586.1| radical SAM enzyme [Clostridiales bacterium 1_7_47_FAA]
gi|239516701|gb|EEQ56567.1| radical SAM enzyme [Clostridiales bacterium 1_7_47FAA]
Length = 354
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 127/363 (34%), Positives = 205/363 (56%), Gaps = 29/363 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++ + M EE+ E + +G R QI+ WI+V+ F GMS +S+E+R L
Sbjct: 10 RKDIKSMTLEEVTEEMAALG----EKPFRAKQIYDWIHVKLAGSFDGMSSLSKELRQKLK 65
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++S+ I +E+IS DGTRK+L IE+V++ ++C+SSQVGC
Sbjct: 66 DNYSLTCLSITEERISQVDGTRKYLFCLE-----DGNIIESVWMQYHHGNSVCISSQVGC 120
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + L RNL E+L Q+ ++ G+++SN+V+
Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLDQIYRIQAH-----------------TGQRVSNVVV 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEP N+DNV + L + S GL+ S+R +T+ST G VP I + +E V LA+SL
Sbjct: 164 MGSGEPFDNYDNVIRFLRLISHEKGLNISQRNLTVSTCGIVPGILQFAQEGLAVTLALSL 223
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++++R L+PI +Y L+ +++AC +Y + RR+TFEY +++G+ND+ +A L
Sbjct: 224 HAPNDEVRKTLMPIANRYKLKDVLEACHYYYEKT-GRRLTFEYSLVQGVNDNLDEARALS 282
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++K +NLIP NP +Y+ S +K I F + ++++G + IR G DI ACG
Sbjct: 283 RLIKDQHGHVNLIPVNPIKERDYVQSGRKAIADFKDLLEKNGINVTIRREMGRDIGGACG 342
Query: 364 QLK 366
QL+
Sbjct: 343 QLR 345
>gi|78223881|ref|YP_385628.1| ribosomal RNA large subunit methyltransferase N [Geobacter
metallireducens GS-15]
gi|123742801|sp|Q39S71|RLMN_GEOMG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78195136|gb|ABB32903.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter metallireducens
GS-15]
Length = 346
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 156/370 (42%), Positives = 216/370 (58%), Gaps = 30/370 (8%)
Query: 3 FLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ K + + ++L L G R R QI+KW+Y + R F M+D+++++R
Sbjct: 1 MMNGKIDIKNLTLDDLIAFLAGKG----KERYRARQIFKWLYQKDARSFAEMTDLAKDLR 56
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + I E ++S DGTRK+L R +E+V IPE+ R TLC+SSQ
Sbjct: 57 RDLEETAVISDLEPEAMEVSRDGTRKYLFRLE-----DGNTVESVLIPEEDRTTLCISSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC++ C FC TGT +L RNLTA EI+ Q+ R + + N
Sbjct: 112 VGCAMACEFCLTGTFRLTRNLTAGEIVNQICAVRRDV-------------------PVRN 152
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
IV MGMGEPL N DNV K+L I GL FS RR+T+STSG VP + R+G E+ V LA+
Sbjct: 153 IVFMGMGEPLANLDNVVKALKIILHDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLAV 212
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL+A ++++R+ ++P+NR+YPL +L+DACR YP L R+IT EYVM+KG+NDS DA
Sbjct: 213 SLNATTDEVRDRIMPVNRRYPLRLLLDACRSYP-LPGRRKITIEYVMIKGLNDSLEDAKR 271
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+K+L I +KINLIPFN GC + DQ I F + ++ R+ RG DI AA
Sbjct: 272 LVKLLSDISSKINLIPFNEHDGCSFKSPDQGAIDVFHSYLLSKHFTVITRSSRGSDISAA 331
Query: 362 CGQLKSLSKR 371
CGQLK +
Sbjct: 332 CGQLKGKLDK 341
>gi|307703606|ref|ZP_07640548.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
gi|331266156|ref|YP_004325786.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme
[Streptococcus oralis Uo5]
gi|307623013|gb|EFO02008.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
gi|326682828|emb|CBZ00445.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme
[Streptococcus oralis Uo5]
Length = 361
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|306829710|ref|ZP_07462899.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
gi|304428061|gb|EFM31152.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
Length = 361
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN
Sbjct: 2 KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDSLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|322388131|ref|ZP_08061736.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
gi|321141038|gb|EFX36538.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
Length = 361
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRHGMQEWILEQG----EKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|15675432|ref|NP_269606.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes M1 GAS]
gi|21910720|ref|NP_664988.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS315]
gi|28895590|ref|NP_801940.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes SSI-1]
gi|56807972|ref|ZP_00365785.1| COG0820: Predicted Fe-S-cluster redox enzyme [Streptococcus
pyogenes M49 591]
gi|71903862|ref|YP_280665.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS6180]
gi|71911074|ref|YP_282624.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS5005]
gi|94994765|ref|YP_602863.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS10750]
gi|209559696|ref|YP_002286168.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes NZ131]
gi|81620716|sp|Q99YU5|RLMN_STRP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81706663|sp|Q7CEX7|RLMN_STRP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|122986830|sp|Q1J5R7|RLMN_STRPF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123747764|sp|Q48SK0|RLMN_STRPM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807217|sp|B5XMB1|RLMN_STRPZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|13622621|gb|AAK34327.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|21904923|gb|AAM79791.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810839|dbj|BAC63773.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|71802957|gb|AAX72310.1| radical SAM family enzyme [Streptococcus pyogenes MGAS6180]
gi|71853856|gb|AAZ51879.1| radical SAM family enzyme [Streptococcus pyogenes MGAS5005]
gi|94548273|gb|ABF38319.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10750]
gi|209540897|gb|ACI61473.1| hypothetical protein Spy49_1185c [Streptococcus pyogenes NZ131]
Length = 359
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + D G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L
Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSKTMKKDREK 354
>gi|325261901|ref|ZP_08128639.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
gi|324033355|gb|EGB94632.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
Length = 345
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 119/370 (32%), Positives = 198/370 (53%), Gaps = 29/370 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + E+L+ + IG + R Q+++W++V+ F M+++S+E+R L+
Sbjct: 2 KKDIRAYTYEQLQAEMAAIG----EKKFRAKQLYEWLHVKLAGSFDEMTNLSRELREKLD 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + I+ +++ + S DGT K+L +E+V + K ++C+SSQVGC
Sbjct: 58 REYEILPVRMLERQESQMDGTNKFLFMLH-----DQNVVESVLMRYKHGNSVCISSQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + LVRNL+ E+L Q+ + + G ++SN+V+
Sbjct: 113 RMGCRFCASTIGGLVRNLSPSEMLGQIYEIQKV-----------------TGERVSNVVI 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEPL N++N + + +D GL S+R +T+ST G VP + + EE + LA+SL
Sbjct: 156 MGTGEPLDNYENFLCFIRLLTDEHGLHISQRNVTVSTCGIVPKMLELAEENLQITLALSL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H + + R L+P+ KY L ++ AC Y + RRITFEY ++ G+ND+ DA LI
Sbjct: 216 HGTTQEKRKELMPVANKYELSDVLHACDEYFRKT-GRRITFEYSLVHGVNDTDEDAGELI 274
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ILK +NLIP NP ++ +K+ + F +++SG + IR G DI ACG
Sbjct: 275 RILKPRNCHLNLIPVNPVKERSFVRPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334
Query: 364 QLKSLSKRIP 373
QL+ +
Sbjct: 335 QLRRRYVQTN 344
>gi|306827020|ref|ZP_07460318.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
gi|304430766|gb|EFM33777.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
Length = 359
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + D G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L + +D GL+ R IT+STSG I E + LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQANLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L
Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSKTMKKDREK 354
>gi|323352763|ref|ZP_08087733.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
gi|322121799|gb|EFX93545.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
Length = 362
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R SQIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIARLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKTGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|134299564|ref|YP_001113060.1| radical SAM protein [Desulfotomaculum reducens MI-1]
gi|205829746|sp|A4J582|RLMN_DESRM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|134052264|gb|ABO50235.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfotomaculum reducens
MI-1]
Length = 350
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 126/359 (35%), Positives = 194/359 (54%), Gaps = 29/359 (8%)
Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
+ E++ + +G R QI +W++ +G+ F M+++S+ +R LN+ ++
Sbjct: 16 QSEIQHFIKDLG----EKPFRADQICRWVFAQGVSSFDEMTNLSKGLRAKLNELTTLSQA 71
Query: 74 EIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
I+ ++S T K+L P +E+V + ++CVS+QVGC + C FC
Sbjct: 72 TILTSQVSAKGDTIKFLFGLP-----DGHAVESVLMKHTYGNSVCVSTQVGCRMGCLFCA 126
Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
+ LVRNL+ EI QVL + G ++S+IV+MG GEPL
Sbjct: 127 STINGLVRNLSPGEIYDQVLGIQR-----------------ETGERVSHIVIMGAGEPLD 169
Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251
NFDNV K L GL+ R ITLST G VP + + ++ + LA+SLHA ++DLR
Sbjct: 170 NFDNVLKFLENIHAEYGLNIGYRHITLSTCGLVPRMQELALRKLPITLAVSLHAPNDDLR 229
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
+ LVPINR+Y + LI+AC +Y ++ RRITFEY +L GINDS L +LK +
Sbjct: 230 DKLVPINRRYKIHQLIEACSNYIEIT-GRRITFEYALLSGINDSDEHVRQLAALLKNLLC 288
Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
INLIP NP E++ + + + F + +++ G + +R G DI AACGQL+ +
Sbjct: 289 HINLIPVNPVEEKEFIRTPPEKVERFRQYLEKVGLNVTVRRELGGDIDAACGQLRRRYE 347
>gi|108757013|ref|YP_631737.1| radical SAM protein [Myxococcus xanthus DK 1622]
gi|123074312|sp|Q1D6I6|RLMN2_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=23S rRNA m2A2503 methyltransferase 2
gi|108460893|gb|ABF86078.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
Length = 378
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 146/364 (40%), Positives = 205/364 (56%), Gaps = 18/364 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E L + + R QI++W++ RG F M+D+S+ +R L
Sbjct: 24 VDVASLSLEALSRFVTE---ELGERAFRAPQIYRWLHQRGATSFDEMTDLSKVLREKLRA 80
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I+ E S DGT K+ + IE+VY+P + R TLCVS+QVGC++
Sbjct: 81 RAEIVPLVKDCELRSTDGTIKYRWKTR-----DGRYIESVYMPTEDRRTLCVSTQVGCAM 135
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TGT L RNLT EI+ QV + G E + R +SN+V MG
Sbjct: 136 ACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRKNEGHETL---------RPLSNLVFMG 186
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF+N+K +LSI G +FS R IT+ST G VP I R G+E V LAISL+A
Sbjct: 187 MGEPLHNFENLKTALSILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNAS 246
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++ R+ +P+NRK+ + L+DACR +P L RRITFEYV++KG ND+ DA LI++L
Sbjct: 247 TDEQRSKTMPVNRKWNIAALLDACRKFP-LRQGRRITFEYVLIKGFNDADEDAHRLIELL 305
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KGIP K+NLIP+N PG + + ++ F + ++ IR RG DI ACGQL
Sbjct: 306 KGIPVKVNLIPYNENPGLGFHTTGEERAEEFRAILADGHVAAYIRRNRGRDIAGACGQLA 365
Query: 367 SLSK 370
+ +
Sbjct: 366 NRGE 369
>gi|322389001|ref|ZP_08062571.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
903]
gi|321144306|gb|EFX39714.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
903]
Length = 362
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+++ + + G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|225418643|ref|ZP_03761832.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme
DSM 15981]
gi|225041830|gb|EEG52076.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme
DSM 15981]
Length = 368
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 32/382 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + M EELE L ++G R QI+ W++V+ F+ M+ IS+E++ L+
Sbjct: 10 KIDIKSMTPEELEAFLKELG----EKPFRAKQIYDWLHVKLAERFEEMTSISKELQRKLD 65
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
S+ +VDEKIS DGTRK+L IE+V++ ++C+SSQ GC
Sbjct: 66 AACSLTCLRVVDEKISTIDGTRKYLFAL-----ADGNIIESVWMQYHHGNSVCISSQAGC 120
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + L RNL E+L Q+ + + G ++SN+V+
Sbjct: 121 RMGCRFCASTLDGLARNLRPSEMLDQIYRIQRI-----------------TGERVSNVVV 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG GEP+ N+DN+ + + + S GL+ S+R +T+ST G VP I R+ EE + LA+SL
Sbjct: 164 MGSGEPMDNYDNLVRFIRLISHEKGLNISQRNLTVSTCGLVPEIRRLAEEGFQITLALSL 223
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++R L+PI +Y L+ ++ ACR+Y + RR+TFEY ++ G+ND+ R+A L
Sbjct: 224 HAPDDEVRKTLMPIANRYCLKDVLAACRYYYQQT-GRRLTFEYSLVHGVNDNLREAAALA 282
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+++ +NLIP NP +++ S QK+I F ++++G + IR G DI ACG
Sbjct: 283 KLIRHEHGHVNLIPVNPIKERDFVQSGQKEIQDFKNLLEKNGINVTIRREMGRDIGGACG 342
Query: 364 QLKS---LSKRIPKVPRQEMQI 382
QL+ ++ R EM
Sbjct: 343 QLRKGFLDEEKAQSGRRDEMTE 364
>gi|331004330|ref|ZP_08327805.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
oral taxon 107 str. F0167]
gi|330411396|gb|EGG90811.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
oral taxon 107 str. F0167]
Length = 346
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 205/370 (55%), Gaps = 29/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M EEL+ + ++G R Q+++W++ I F S++S+ R L +
Sbjct: 2 TDIKSMDLEELKTFVKELG----EAEFRAKQLFEWLHKSLIDSFDECSNLSKAFREKLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
S+ E ++ S D T+K+L IE+V + + ++C+SSQVGC
Sbjct: 58 VASLTGMEAIEVFESKIDDTKKYLFALE-----DGNIIESVRMKYEHGNSVCISSQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + LVRNL+ E+L QV + LLG+ ++SNIV+M
Sbjct: 113 MGCKFCASTLDGLVRNLSVSEMLDQVYKIQKLLGE-----------------RVSNIVVM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP+ N+DN+ K + I S MGL+ S+R IT+ST G VP I + +E + LA+SLH
Sbjct: 156 GSGEPMDNYDNIVKFVKIISSDMGLNISQRNITVSTCGIVPKIRELADEGLSITLALSLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++++R ++P+ KY L+ +I AC +Y + RR+++EY ++ GIND+ ++A+NL+K
Sbjct: 216 APNDEIRKTIMPVANKYALKDVISACDYYFKKT-GRRVSYEYSLVAGINDNIKEAMNLVK 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++ G INLIP NP ++ SD+ I F + +++ G ++ +R G DI ACGQ
Sbjct: 275 LVNGRNIHINLIPVNPIKERDFKQSDKLKIKEFKDFLEKKGVNATVRREMGRDIDGACGQ 334
Query: 365 LKSLSKRIPK 374
L+ + +
Sbjct: 335 LRRRFIQSER 344
>gi|300776949|ref|ZP_07086807.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910]
gi|300502459|gb|EFK33599.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910]
Length = 344
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 117/364 (32%), Positives = 196/364 (53%), Gaps = 24/364 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + ++L++ + +G R Q++ W++ + + M+++S+ +R +++
Sbjct: 2 KDIRTLSLDQLKDYFVSLG----EKPFRAKQVYDWLWSKNLHSIDEMTNLSKSLREKISE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++I + + S DGT K ++ + +E+V IP ++R T CVSSQVGCSL
Sbjct: 58 EYTINPVSVDLLQKSSDGTIKNGVKLH-----DGLMVESVLIPTETRTTACVSSQVGCSL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC T K +RNL EI+ QV L + R +SNIV MG
Sbjct: 113 NCEFCATARLKRMRNLEVAEIVDQVALI-------------DSQSRMYFDRPLSNIVFMG 159
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEP+ N+ NV +++ + GL S RRIT+STSG I + ++ V LA+SLH+
Sbjct: 160 MGEPMMNYKNVVEAIKKITQPEGLGMSPRRITVSTSGIPKMIKMLADDELRVKLALSLHS 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
RN ++P + K+PL +++A +++ + + ITFEY + KGIND D LIK
Sbjct: 220 AIESKRNEIMPFSDKFPLTDIMEALQYWYQKTGSV-ITFEYCVWKGINDGDEDIKALIKY 278
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
K +P+K+NLI +NP +Y +++ + ++ +G + +R RG DI AACGQL
Sbjct: 279 CKQVPSKVNLIQYNPIGDGKYDQCNKQAEENYIRQLENAGITVMVRRSRGGDIDAACGQL 338
Query: 366 KSLS 369
+ +
Sbjct: 339 ANKT 342
>gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|205829871|sp|A1AW44|RLMN_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 356
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 152/373 (40%), Positives = 204/373 (54%), Gaps = 24/373 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K++L+ + L + + +G RT QI +WIY DF+ M + S+ +R
Sbjct: 1 MNKKNLLSFNQNALNDFFVGLG----EKPYRTKQIMQWIYKDHEFDFEKMLNFSKSLRDE 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L++ + +V + DG KW+L IE +YIPEK+RGTLC+SSQVG
Sbjct: 57 LSKVVCVELLRVVKQNFILDGVIKWVLAL-----DKNNHIEMIYIPEKNRGTLCISSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C L C+FC TG Q +NLT EI+ QVL+A L S ++ISN+V
Sbjct: 112 CGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRYLN--------------SKTKRISNVV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N V + + D + S+R++T+STSG VP + R+ E V LA+SL
Sbjct: 158 FMGMGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTPVSLAVSL 217
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNL 302
HA + LRN LVPIN+KY LE L+ AC+ Y +R I FEYVMLKG+NDS A L
Sbjct: 218 HASDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANKL 277
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K+LKGI AKINLIPFN + +Y S + I F + G + R RG DI AC
Sbjct: 278 VKLLKGISAKINLIPFNSFEKTQYQTSSAQTIEKFQNILYHQGIRTMTRRTRGEDIGGAC 337
Query: 363 GQLKSLSKRIPKV 375
GQL K
Sbjct: 338 GQLAGKVLDKTKR 350
>gi|225868978|ref|YP_002744926.1| radical SAM superfamily protein [Streptococcus equi subsp.
zooepidemicus]
gi|259491996|sp|C0MD67|RLMN_STRS7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|225702254|emb|CAX00012.1| radical SAM superfamily protein [Streptococcus equi subsp.
zooepidemicus]
Length = 360
Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 201/375 (53%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL + G R +QIW W+Y + ++ F M++IS+E +L
Sbjct: 2 KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRVQSFDEMTNISKEFLAILK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCINPLKQRVAQESADGTVKYLFELP-----DGMLIETVLMRQHYGQSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q+++ ++ ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDQ------------RGQDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PL+ L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKKDRQK 354
>gi|225870018|ref|YP_002745965.1| radical SAM superfamily protein [Streptococcus equi subsp. equi
4047]
gi|254807212|sp|C0MBZ4|RLMN_STRE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|225699422|emb|CAW92902.1| radical SAM superfamily protein [Streptococcus equi subsp. equi
4047]
Length = 360
Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 125/380 (32%), Positives = 203/380 (53%), Gaps = 26/380 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL + G R +QIW W+Y + ++ F M++IS+E +L
Sbjct: 2 KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRVQSFDEMTNISKEFVAILK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCINPLKQRVAQESADGTVKYLFELP-----DGMLIETVLMRQHYGQSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q+++ ++ + ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDK------------RAQDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PL+ L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+S + + + +
Sbjct: 340 CGQLRSNTMKKDRQKAAAAR 359
>gi|91215990|ref|ZP_01252959.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC
700755]
gi|91185967|gb|EAS72341.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC
700755]
Length = 348
Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 124/364 (34%), Positives = 195/364 (53%), Gaps = 24/364 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + + ++EL E + G R SQ++ W++ + +F+ M+++S+E R +L
Sbjct: 5 KKDIRALSKQELNEFFVSQG----DKSFRGSQVYNWLWNKATYNFEDMTNLSKETRQMLE 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I + E+ + + S DGT K ++ +E+V IP SR T CVSSQVGCS
Sbjct: 61 DNFVINHIEVDEMQRSKDGTIKNAVKLH-----DGFTVESVLIPTLSRTTACVSSQVGCS 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T K +RNL A+EI QV+ + G +SNIV M
Sbjct: 116 LDCKFCATAKLKRMRNLNADEIFDQVVAI-------------DKESRLYNGIPLSNIVFM 162
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N+ NV KS+ + GL S +RITLSTSG I ++ ++ LA+SLH
Sbjct: 163 GMGEPLMNYKNVLKSVEKITSPDGLGMSPKRITLSTSGVPKMIKKLADDDVKFHLAVSLH 222
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ +++R ++P N K+PL L D+ ++ + +T+EY++ KGIND+ D L+K
Sbjct: 223 SAIDEIRTQIMPFNAKFPLADLKDSLLYWYEKTGKS-VTYEYIVWKGINDTQEDISALVK 281
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ IP K+N+I +NP ++ + ++ + + +R RG DI AACGQ
Sbjct: 282 FCQLIPCKVNIIEYNPIDDGQFQQGSDDAVAKHVNALEANHITVTLRHSRGKDIDAACGQ 341
Query: 365 LKSL 368
L +
Sbjct: 342 LANK 345
>gi|296876970|ref|ZP_06901014.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
15912]
gi|296432005|gb|EFH17808.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
15912]
Length = 362
Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+++ + + G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDREK 354
>gi|293402260|ref|ZP_06646398.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291304367|gb|EFE45618.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 352
Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 131/373 (35%), Positives = 197/373 (52%), Gaps = 25/373 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SL E++ E L + R QI++W+Y + + MSD+S+E R +L
Sbjct: 2 KSLYDFNYEQMAELALSH----EWKKFRGHQIFQWLYRKRVTSIDEMSDLSKETREILKA 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++++ + D+++S DGT K+L IE+V + ++CV+SQVGC++
Sbjct: 58 NYALKPLTLKDKQVSSDGTTKYLFALE-----DGSLIESVLMQFDYGKSICVTSQVGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
+C+FC +G K RNLT+ E++ QV+ + L ++S+IV+MG
Sbjct: 113 SCAFCASGLTKKKRNLTSGEMVAQVMYVQQDLD--------------KQEERLSHIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N++NV LS + GL R IT+ST G VP I +E LAISLHA
Sbjct: 159 TGEPFDNYENVMNFLSTVNHDRGLGIGARHITISTCGVVPKIYEFSKEHTQYNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N LR+ L+PIN YPLE L+ A R Y +N R+TFEY++L+G+ND L K+
Sbjct: 219 PNNTLRDELMPINHAYPLEELMKAIRQYAAENNR-RLTFEYILLRGVNDQKEHVKQLAKL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ A +NLIP+N + D + F + + + G IR G DI AACGQL
Sbjct: 278 LRGLNAYVNLIPYNAVDEKGFQGVDHAHAMVFYDALMKEGIRCTIRKEHGADIDAACGQL 337
Query: 366 KSLSKRIPKVPRQ 378
+ R RQ
Sbjct: 338 RVKHLRKEAKERQ 350
>gi|253580148|ref|ZP_04857415.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848667|gb|EES76630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 346
Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 115/373 (30%), Positives = 197/373 (52%), Gaps = 30/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M +EL++ + +G R QI+ W++ + + M+++S+ +R L +
Sbjct: 2 TDIKSMTIDELKKLMTTLG----DKPFRAKQIYSWLHEHLVTSYDEMTNLSKSLREKLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + ++V + S DGT+K+L R IE+V + K ++C+SSQVGC
Sbjct: 58 -YPVTALKMVKVQTSRIDGTQKYLFRLS-----DGNVIESVLMRYKHGNSVCISSQVGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + L R L E+L Q+ ++L G ++SN+V+M
Sbjct: 112 MGCRFCASTIGGLTRCLLPSEMLDQIYRIQAL-----------------TGERVSNVVVM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N++N+ + + I ++ GL S+R +T+ST G VP I + +E + LA+SLH
Sbjct: 155 GTGEPLDNYENLLRFIHILTEDGGLHISQRNLTVSTCGLVPKIYDLAKEKLQMTLALSLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ R L+PI KY ++ +++ACR+Y + RRITFEY ++ G+NDS DA L
Sbjct: 215 APNDVKRRELMPIANKYSMDEVLEACRYYFKET-GRRITFEYSLVAGVNDSDEDARELSG 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++ + +NLIP NP ++ S ++ + F +++ G + IR G DI ACGQ
Sbjct: 274 RIRDMNCHVNLIPVNPIKERSFVRSTRQAVENFKIKLEKCGINVTIRREMGSDIDGACGQ 333
Query: 365 LKSLSKRIPKVPR 377
L+ + +
Sbjct: 334 LRKSYMEKTESEK 346
>gi|260584540|ref|ZP_05852286.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
gi|260157563|gb|EEW92633.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
Length = 375
Score = 342 bits (876), Expect = 8e-92, Method: Composition-based stats.
Identities = 128/382 (33%), Positives = 210/382 (54%), Gaps = 26/382 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + G E+L + G + R Q+W W+Y + + F+ M+++S+++ LN
Sbjct: 15 KPIIYGYPYEDLVAWFEEHG----EKKFRAGQLWDWLYRKRVTSFEEMTNLSKDLIAKLN 70
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F+ ++ S DGTRK+L + IETV +P++ ++CV++QVGC+
Sbjct: 71 ETFTFPVLNEKIKQQSTDGTRKFLFEL-----ADGLLIETVLMPQEYGLSICVTTQVGCN 125
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G R+L A EI+ QV+ + L + + G ++S+IV+M
Sbjct: 126 IGCTFCASGIIAKQRDLVAGEIVAQVMHVQRTLDEV------------APGDRVSHIVVM 173
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+DNV K L + + GL+ R IT+STSG P I +E V LA+SLH
Sbjct: 174 GIGEPFDNYDNVIKFLKVVNSDTGLAIGARHITVSTSGLAPKILDFAKEGLQVNLALSLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ND R+ ++ INRKYP+E++++A Y +N R+TFEY+ML +NDS A L
Sbjct: 234 APDNDTRSKIMRINRKYPIEVVMEAINEYIRTTNR-RVTFEYIMLDHVNDSVEQAQQLAD 292
Query: 305 IL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+L K + +NLIP+N +Y S + +V F + +K++ + +R G DI AA
Sbjct: 293 LLADKKRLSYVNLIPYNKVREHDQYERSSKDRVVAFYDVLKKNHINCVVRKEFGHDIEAA 352
Query: 362 CGQLKSLSKRIPKVPRQEMQIT 383
CGQL+S + + +++ +
Sbjct: 353 CGQLRSSQMKRDRDRKRKSEED 374
>gi|220903723|ref|YP_002479035.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868022|gb|ACL48357.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 386
Score = 342 bits (876), Expect = 8e-92, Method: Composition-based stats.
Identities = 134/366 (36%), Positives = 195/366 (53%), Gaps = 17/366 (4%)
Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+L+ + ELE ++G P + R Q+W+WI+ R RDF M++IS+ R LL
Sbjct: 24 TNLLNLTLPELEAWTQSELGEP----KFRAMQLWQWIWQRMARDFDTMTNISRPCRELLA 79
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I++PE+ + S DGT K+LLR V I + R T C+S QVGC+
Sbjct: 80 AKACIVWPEVSAVEESRDGTTKFLLRLEDGAQIETVLIPSDSREGVRRWTQCLSCQVGCT 139
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG RN+T EIL Q+L+AR LGD I + N+V M
Sbjct: 140 MGCTFCSTGQMGFERNMTMGEILGQILVAREHLGDTRLHWPI-----------LRNLVFM 188
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N V +SL ++ GL FS RRIT+ST G + +GE LA+SLHA
Sbjct: 189 GMGEPLLNLKEVMRSLESLNNDKGLGFSPRRITVSTCGIEKGLKELGESGLAFLAVSLHA 248
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +R ++P ++ L L+ A + YP L ITFEY+ML G+NDS A L +
Sbjct: 249 PNQAVRERIMPKAARWRLNDLMAALKSYP-LKTREHITFEYLMLGGVNDSLEHARELAPL 307
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ + K+N+I +N G Y ++ I+ F + + ++ IR +G DI AACGQL
Sbjct: 308 VSAVKGKLNIIVYNAAEGSPYQAPSEERILAFEKYLWSKDITAIIRKSKGQDIKAACGQL 367
Query: 366 KSLSKR 371
K+ ++
Sbjct: 368 KAARQK 373
>gi|291534141|emb|CBL07254.1| 23S rRNA m(2)A-2503 methyltransferase [Megamonas hypermegale
ART12/1]
Length = 345
Score = 342 bits (876), Expect = 8e-92, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 198/365 (54%), Gaps = 26/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ G+ EL + + +P + R QI +W+Y + F M+++S+++R L Q
Sbjct: 2 TNIFGLNLTELTSLITDLNLP----KFRAKQIIEWLYQKHATSFDEMTNLSKDLREKLAQ 57
Query: 67 HFSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F+I + D S T K+LL F G + +ETV + + ++CVSSQ GC+
Sbjct: 58 EFTIERAKSCDRLDSSDGKTTKFLLEF-----GDGIGVETVLMRQPYGNSICVSSQAGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC + + RNL+ EIL Q + + LL G +I+NIV+M
Sbjct: 113 MGCSFCASTLHGMARNLSTGEILAQAMFIQELLNQ--------------TGEQINNIVIM 158
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP+ N+DNV + + + L+ R IT+STSG VP I ++ +E + L+ISLH
Sbjct: 159 GSGEPMLNYDNVLNFIRLVHEPYCLNLGYRNITISTSGIVPGINKLAQENLPITLSISLH 218
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N LR L+PIN++YP+E +I A +Y + RRIT+EY+++ ND+ +A+ L K
Sbjct: 219 APNNVLRTELMPINKRYPIEEVIKAAVNY-ANTTKRRITYEYILIDKYNDNMTEAVELCK 277
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LK A +NLIP NP Y I F++ + ++ IR G DI AACGQ
Sbjct: 278 LLKNQLANVNLIPINPVKERNYNRPSLARIKAFAKYLNDHHLTATIRQEMGTDIQAACGQ 337
Query: 365 LKSLS 369
L++
Sbjct: 338 LRNKH 342
>gi|317501928|ref|ZP_07960112.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
gi|316896608|gb|EFV18695.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
Length = 348
Score = 342 bits (876), Expect = 8e-92, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 195/370 (52%), Gaps = 29/370 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + EEL++ L ++G R QI++W++V+ F M+++S ++R L
Sbjct: 2 KKDIRAYEYEELQKELERLG----EKPFRAKQIYEWLHVKLADRFDEMTNLSVKLREKLA 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + I ++ + + S DGT K+L R +E+V + K ++C+SSQ GC
Sbjct: 58 EEYDIFPVQMAERQQSKLDGTNKFLFRLY-----DGNMVESVLMRYKHGNSVCISSQAGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + L RNL+A E+L Q+ + ++G+ ++SN+V+
Sbjct: 113 RMGCVFCASTIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVI 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEPL N++N K + I +D GL+ S+R +T+ST G VP I + EE + LA+SL
Sbjct: 156 MGTGEPLDNYNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H + + R L+P+ KY L ++ AC Y + RR+TFEY ++ +ND+ DA L
Sbjct: 216 HGSTQEKRRKLMPVANKYELGEVLSACDTYFKKT-GRRVTFEYSLVHEVNDTDEDAKELS 274
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L +NLIP NP + +K + F +++SG + IR G DI ACG
Sbjct: 275 ELLAPRNCHLNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACG 334
Query: 364 QLKSLSKRIP 373
QL+ +
Sbjct: 335 QLRRRYEEET 344
>gi|222056625|ref|YP_002538987.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32]
gi|221565914|gb|ACM21886.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32]
Length = 345
Score = 342 bits (876), Expect = 8e-92, Method: Composition-based stats.
Identities = 140/370 (37%), Positives = 207/370 (55%), Gaps = 29/370 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K + +LE + G R R QI+KW+Y + F M+++S++ R
Sbjct: 1 MEKVDIKNFTLSQLEAHITGQG----KERFRAKQIFKWLYQQNATSFAQMTNLSKDFRAE 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + I E + S DGT+K+L R +E+V IP++ R TLC+SSQVG
Sbjct: 57 LEKTARISNLEAEAVESSADGTKKYLFRLS-----DGNAVESVLIPDEDRNTLCISSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TGT +L RNLT EI+ QV + + NIV
Sbjct: 112 CAMGCEFCLTGTFRLTRNLTTAEIVNQVCAVKK-------------------NEPVRNIV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N +NV +L I +D G FS R++TLST+G VP +A +G + V LAIS+
Sbjct: 153 FMGMGEPLANLENVIGALRILTDPDGFQFSTRKVTLSTAGLVPEMAELGAAVMVNLAISM 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+A ++++R+ ++P+NR+YPL+ L+ AC+ +P S IT EYVM+KG+NDS DA L+
Sbjct: 213 NATTDEVRDRIMPVNRRYPLKELLAACKAFPLPSRRW-ITVEYVMIKGVNDSLDDAKRLV 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++ P+K+NLIPFN GC+ Q I F + + + R+ RG DI AACG
Sbjct: 272 RLISTFPSKVNLIPFNEHEGCDLRTPTQDSIDRFHKFLLDKHVTVITRSSRGSDISAACG 331
Query: 364 QLKSLSKRIP 373
QLK ++
Sbjct: 332 QLKGRLDKVT 341
>gi|312892339|ref|ZP_07751834.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM
18603]
gi|311295123|gb|EFQ72297.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM
18603]
Length = 350
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 193/367 (52%), Gaps = 24/367 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K + + E L++ L++G R Q+++W++ + F MS++S+E+R L
Sbjct: 4 NKTDIRSLSYEALQKLFLELG----EKSFRAKQVYEWLWKKSCFSFNEMSNLSKELRQKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F+I ++ + S D T K IE V IP R T CVSSQVGC
Sbjct: 60 EEQFTINNVKVNTSQFSADKTIKNSFILH-----DGHLIEGVLIPADDRMTACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SLTC FC TG + RNL +EI QV+L + + ++NIV
Sbjct: 115 SLTCKFCATGYMERKRNLNPDEIYDQVVLI-------------DQQARQNYDHHLTNIVY 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N+ NV KS+ + GL+ + +RIT+ST+G I ++G++ LA+SL
Sbjct: 162 MGMGEPLLNYANVLKSIERITAEDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLALSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ RN ++PIN + L+ L +A ++Y + +T+EY++ ND +DA+ L
Sbjct: 222 HAANDAKRNEIMPINEQNSLKALAEALKYYYAKT-KNPVTYEYIVFNDFNDEIQDAVELA 280
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K IP K+N+I +NP Y +D I F++ +++ ++ +R RG DI AACG
Sbjct: 281 AFCKHIPCKVNIIEYNPISFASYTNADVDKIEAFADYLRKQDINTNVRRSRGKDIDAACG 340
Query: 364 QLKSLSK 370
QL K
Sbjct: 341 QLAIKEK 347
>gi|332366108|gb|EGJ43864.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
Length = 357
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 208/375 (55%), Gaps = 31/375 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLITKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE-----------------RVSHIVVM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 156 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L +
Sbjct: 216 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 274
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 275 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 334
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 335 CGQLRSNTMKRDREK 349
>gi|50914628|ref|YP_060600.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS10394]
gi|139473446|ref|YP_001128162.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes str. Manfredo]
gi|81371810|sp|Q5XAZ6|RLMN_STRP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829905|sp|A2RDK1|RLMN_STRPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|50903702|gb|AAT87417.1| Florfenicol resistance protein [Streptococcus pyogenes MGAS10394]
gi|134271693|emb|CAM29926.1| radical SAM superfamily protein [Streptococcus pyogenes str.
Manfredo]
Length = 359
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + D G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L
Sbjct: 221 APNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSKTMKKDREK 354
>gi|297584286|ref|YP_003700066.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
gi|297142743|gb|ADH99500.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
Length = 358
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 133/379 (35%), Positives = 210/379 (55%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K S+ G+ ELE+ G + R Q+W W+YV+ IRDF M++I ++ L
Sbjct: 1 MNKTSIYGLTFNELEDWFEGKG----EKKFRAKQVWDWLYVKRIRDFDDMTNIKKDTISL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ HF + E+ ++ S DGT+K+L + IETV + ++CV++QVG
Sbjct: 57 IKDHFYLESLELHSKQESKDGTKKFLFKLS-----DGNLIETVLMKFDYGNSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+LT+ EI+ Q+L + + D ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKDRDLTSAEIVEQILKVQFDMDD------------KQTEERVSHIV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+DN+ L I + GL+ R IT+STSG V I +E V LA+S
Sbjct: 160 VMGIGEPFDNYDNLMSFLRIVNSDRGLAIGARHITVSTSGLVEKIRAFADENLQVNLAVS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +NDLR+ ++ IN+ P+E ++ A +Y +N RIT EY++L G+ND P A L
Sbjct: 220 LHAPNNDLRSSIMKINKGQPIEDVMSAIDYYLEKTNR-RITLEYILLDGVNDKPEHAKEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+++ K INLIP+NP +Y S++ I+TF + + ++G +R +G DI
Sbjct: 279 AELVRDKKKLTYINLIPYNPVDEYIQYKQSEKGAILTFYDLLMKNGVQCGVRHEQGSDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + + +
Sbjct: 339 AACGQLRSKQMKKDREKAK 357
>gi|291526151|emb|CBK91738.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale DSM
17629]
Length = 341
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 201/365 (55%), Gaps = 29/365 (7%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M +EL E ++ +G + R QI++WI+V+ + F M++IS++ +L + +I
Sbjct: 1 MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISKKFIQVLKDNAILI 56
Query: 72 YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
+ + ++S DGTRK+L IE+V + K ++C+SSQVGC + C F
Sbjct: 57 SLKKEEVQVSKLDGTRKYLFAL-----DDGNVIESVLMKYKHGNSVCISSQVGCRMGCRF 111
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C + LVR L E++ Q+ +G+ +ISN+V+MG GEP
Sbjct: 112 CASTLDGLVRGLRPSEMIDQIYQIGKDIGE-----------------RISNVVVMGTGEP 154
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
L N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E + LA+SLHA + +
Sbjct: 155 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLSITLALSLHASNQE 214
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
R L+P+ Y + ++DAC++Y + RR+TFEY ++ G+ND+ DA L ++ G+
Sbjct: 215 KRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTAEDAAELSALVHGM 273
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
INLIP NP +Y+ S++ I F ++++G + IR G DI ACGQL+
Sbjct: 274 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLRKKH 333
Query: 370 KRIPK 374
+
Sbjct: 334 IDKER 338
>gi|195977717|ref|YP_002122961.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol
resistance protein [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|254807213|sp|B4U1T1|RLMN_STREM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|195974422|gb|ACG61948.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol
resistance protein [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 360
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 126/380 (33%), Positives = 202/380 (53%), Gaps = 26/380 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ R+EL + G R +QIW W+Y + I+ F M++IS+E +L
Sbjct: 2 KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRIQSFDEMTNISKEFLAILK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCINPLKQRVAQESADGTVKYLFELP-----DGMLIETVLMRQHYGQSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q+++ ++ ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDQ------------RGQDERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +PL+ L A +Y +N R+TFEY+ML +ND A L
Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+S + + + +
Sbjct: 340 CGQLRSNTMKKDRQKAAAAR 359
>gi|319939639|ref|ZP_08013998.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
anginosus 1_2_62CV]
gi|319811228|gb|EFW07534.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
anginosus 1_2_62CV]
Length = 367
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R++L + G + R +QIW+W+Y + ++ F M++IS+++ L
Sbjct: 9 KPSIYSLTRQDLIDWTESKG----EKKFRATQIWEWLYRKRVQSFAEMTNISKDLLAKLE 64
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 65 DEFVVNPLRQRVVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 119
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + G ++S+IV+M
Sbjct: 120 IGCTFCASGLIKKQRDLNNGEIMSQIMLVQKYFDE------------RGQGERVSHIVVM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 168 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 227
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 228 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 286
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAA 346
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + K
Sbjct: 347 CGQLRSNTMKQDKEK 361
>gi|19746482|ref|NP_607618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS8232]
gi|81632611|sp|Q8P058|RLMN_STRP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|19748687|gb|AAL98117.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 359
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVPILN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + D G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L
Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSKTMKKDREK 354
>gi|328866638|gb|EGG15021.1| putative ribosomal RNA large subunit methyltransferase N
[Dictyostelium fasciculatum]
Length = 432
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 172/369 (46%), Positives = 246/369 (66%), Gaps = 20/369 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++LIG+ +EE+E +G+ + R Q+WKWIY +G ++ + ++S++ R +L+
Sbjct: 57 KKNLIGLSKEEIETQFETLGLE----KYRAKQVWKWIYNKGTKNIDHIDNLSKKHRDILS 112
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ ++I + + + +S DGTRK L+ F E+ETV+IPE++RGTLC+SSQVGC+
Sbjct: 113 EVYNIDHGVVNKDSLSIDGTRKLLVEFK------GDEVETVFIPERNRGTLCISSQVGCT 166
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
C+FC+TGTQKLVRNLTA EI+ QV ARSL+ DF + R ++N+V+M
Sbjct: 167 FQCTFCHTGTQKLVRNLTAGEIVSQVFTARSLMHDFGPTTN---------KRLLTNVVLM 217
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
G GEPL N+ NV K+L I +D G+S SK +ITLSTSG VP I R+G++ + LAISLH
Sbjct: 218 GQGEPLYNYRNVSKALKILTDGEGISISKSKITLSTSGVVPLIERLGQDFPGIGLAISLH 277
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N R+ +VPIN+++P+E L+ AC ++ RIT EYVMLKGIND+ +DA NLI+
Sbjct: 278 ASNNKTRSEIVPINQQWPIEELVQACINFTQKYTKDRITIEYVMLKGINDAKQDAYNLIQ 337
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ P+ INLIPFNPWPG Y C+ I +F+ ++R G +R PRG DILAACGQ
Sbjct: 338 LASQFPSLINLIPFNPWPGTIYECTPIDQIESFARILERGGLKVTVRQPRGTDILAACGQ 397
Query: 365 LKSLSKRIP 373
L S S++
Sbjct: 398 LVSSSQKKK 406
>gi|255038476|ref|YP_003089097.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053]
gi|254951232|gb|ACT95932.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053]
Length = 350
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 125/371 (33%), Positives = 194/371 (52%), Gaps = 25/371 (6%)
Query: 1 MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
M ++ K+ + + ++++ + + G R QI++WI+ + F M+++S
Sbjct: 1 MTTIQQKQDIRKLNVDQIKTWMTEHG----EKAFRAKQIYEWIWKKSAHSFDEMTNLSLA 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R L+N+HF I ++ ++ S DGT K + +E V IP R T CVS
Sbjct: 57 TRELMNEHFVIHSLDVAKKQHSNDGTVKSAFKL-----FDGNLVEGVLIPAADRMTACVS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGCSLTC FC TG RNL A EI QV+ + +
Sbjct: 112 SQVGCSLTCKFCATGYMDRKRNLEAGEIYDQVVAIAR-------------QAEATFNAPL 158
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
+NIV MGMGEPL N+ NV KS+ + GL+ S +RIT+ST+G I ++ ++
Sbjct: 159 TNIVYMGMGEPLLNYANVLKSIEYITSPKGLNMSPKRITVSTAGIAKMITKLADDEVRFR 218
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA ++ RN ++PIN L+ L DA ++ + RITFEY++ NDS +D
Sbjct: 219 LALSLHAANDKKRNQIMPINESNSLDNLADALNYFYKKT-GNRITFEYIVFNNFNDSLQD 277
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L + K +PA++N+I +NP ++ ++ + F+ ++ G S +R RG DI
Sbjct: 278 AKELWEFCKRVPARVNIIEYNPIAEADFKNTEADRLDKFAAFLEDRGVSVHVRRSRGKDI 337
Query: 359 LAACGQLKSLS 369
AACGQL +
Sbjct: 338 DAACGQLANKE 348
>gi|284039833|ref|YP_003389763.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74]
gi|283819126|gb|ADB40964.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74]
Length = 349
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 188/365 (51%), Gaps = 19/365 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + + +L++ K G R Q+ +W++ + F+ M+++S R LLN
Sbjct: 2 KQDIRKLTAVQLKDWFTKNG----EQGFRAKQVHEWLWKKSALSFEQMTNLSLSTRELLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F I + ++ S DGT K + + V I + + R T CVSSQVGCS
Sbjct: 58 ANFEIRPLTVDQQQRSNDGTIKSSFKLFDGNLVEGVLIPALRNDDLDRMTACVSSQVGCS 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTC FC TG RNL A EI QV+ + + ++NIV M
Sbjct: 118 LTCKFCATGYMDRKRNLDAAEIYDQVVAIDRQAKE-------------NYDAPLTNIVYM 164
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N+ NV +S+ + GL S +RIT+ST+G I ++G++ LA+SLH
Sbjct: 165 GMGEPLLNYKNVLESVDRITSPDGLGMSPKRITVSTAGIAKMIRQLGDDDVKFNLALSLH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ R+ ++PIN LE L DA ++ + RITFEY++ ND+ +DA L K
Sbjct: 225 AANDQKRDQIMPINESNTLEALGDALTYFYKKT-GTRITFEYILFYNFNDTLQDAQELWK 283
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K +PAK+N+I +NP + +D + + F+ ++ G +R RG DI AACGQ
Sbjct: 284 FTKRVPAKVNIIEYNPIAEANFKNTDPQTLDKFAGFLESKGVIVNVRRSRGKDIDAACGQ 343
Query: 365 LKSLS 369
L +
Sbjct: 344 LAGKT 348
>gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
Length = 352
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 129/371 (34%), Positives = 201/371 (54%), Gaps = 24/371 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M ++K + + EELEE L G + R Q++ W++ + +++F MS+IS E
Sbjct: 1 MEEIQKSDVRKLSLEELEEFFLAHG----EKKFRAKQVYDWLWNKSLKNFDDMSNISLET 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LL ++F I + + + S DGT K ++ +E+V IP R T CVSS
Sbjct: 57 RELLKKYFKINHILVDLMQHSSDGTIKNAVKLY-----DDKIVESVLIPTSKRITACVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSL C+FC T K +RNL +EI QV+ + R ++
Sbjct: 112 QVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKE-------------EAEKYFERPLT 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N+ NV ++ + GL + RRITLST G I ++ ++ L
Sbjct: 159 NIVFMGMGEPLLNYANVLAAIDKITSPEGLGMAARRITLSTVGVTKMIRKMADDEVKFNL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ N+ R+ L+PIN P+E L ++ +++ + R++T+EYV+ G+ND R A
Sbjct: 219 AVSLHSAINETRSRLMPINDSNPVEELGESLKYWYKKT-GRKVTYEYVIWDGVNDDERHA 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L K K IP+K+N+I +NP E+ + Q+ + + ++ G + +R RG DI
Sbjct: 278 RALAKFCKLIPSKVNIIQYNPIDEGEFRQAKQEAVDMYIRVLESQGVIAKVRKSRGQDID 337
Query: 360 AACGQLKSLSK 370
AACGQL + ++
Sbjct: 338 AACGQLANKNE 348
>gi|71892305|ref|YP_278039.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|123761466|sp|Q492D9|RLMN_BLOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 373
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 160/367 (43%), Positives = 208/367 (56%), Gaps = 18/367 (4%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ M +EEL K+G R+ QI +WIY DF M++IS+ ++ L
Sbjct: 12 KKVNLLNMNKEELLIFFDKLG----EKPFRSHQIMRWIYHYYCDDFNYMTNISKSLKERL 67
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I P I+ E++S DGT KW ++ +IETVYIPE R TLCVSSQ+GC
Sbjct: 68 KQIAEIRAPIIIKEQLSSDGTIKWAMKI------DEQQIETVYIPENKRTTLCVSSQIGC 121
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L CSFC T Q RNL EI+ QV A L+ + + I + I+NIV
Sbjct: 122 PLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQLIN------LNKKIKIKNNRFPITNIVF 175
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N NV ++ I D G SKR ITLST+G VP I ++ I + LAISLH
Sbjct: 176 MGMGEPLLNIVNVVSAIRIILDDFGFKLSKRHITLSTAGIVPGIEKLKNMIDIPLAISLH 235
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302
A ++ +RN ++PIN+KY + +++A R Y SN RIT EYV+LK IND A L
Sbjct: 236 APNDIIRNKIMPINKKYNINSVLEAARRYSMDTKSNHGRITIEYVLLKNINDDVLHAHQL 295
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K L+GIP KINLIP+NP P Y CS Q + F + + + + IR RG DI AAC
Sbjct: 296 AKQLQGIPCKINLIPWNPIPNIRYACSSQIRMRAFLKVLLKYNIVTIIRKIRGADINAAC 355
Query: 363 GQLKSLS 369
GQL
Sbjct: 356 GQLTGEV 362
>gi|257438998|ref|ZP_05614753.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii
A2-165]
gi|257198583|gb|EEU96867.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii
A2-165]
Length = 346
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 127/373 (34%), Positives = 201/373 (53%), Gaps = 28/373 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K + + EL AL +G P R QI+ W++ + + +F M+D + +
Sbjct: 1 MEQKRCISSLTLAELTAALKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + F I P+I + + DGT K+LLR IETV + T+CVS+QV
Sbjct: 57 KLEEQFYIAAPKIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + VRNL A EI ++ A+ +G+ +IS+I
Sbjct: 112 GCRMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RISHI 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEPL NFD V + L S G++ R I+LST G VP I ++ E+ + L++
Sbjct: 155 VLMGIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSV 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +N++R+ ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A
Sbjct: 215 SLHAPNNEIRSGMMPVNDAYPVEVLMPAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQ 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AA
Sbjct: 274 LADLIRGMGAHVNLIPINPVDGSPYSATDAANVQRFQKKLESLGVNATVRRRLGSEISAA 333
Query: 362 CGQLKSLSKRIPK 374
CGQL+
Sbjct: 334 CGQLRRDEMNGKA 346
>gi|323705502|ref|ZP_08117077.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535404|gb|EGB25180.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 343
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 139/365 (38%), Positives = 200/365 (54%), Gaps = 31/365 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L M +ELE+ L IG + R Q+++WIY RGI +F M+DI +++R L
Sbjct: 2 IDLKNMTIDELEKFFLDIG----ETKYRAKQVFRWIY-RGITNFDDMTDIKKDLRQKLKN 56
Query: 67 HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I +I + +S + K+L +E V I T C+S+QVGC+
Sbjct: 57 MAFISNLQIAKKVVSSEDGTAKYLFLL-----DDENIVEGVAIKYSFGNTSCISTQVGCN 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC +G VRNL A E++ +VL+ G KISNIV+M
Sbjct: 112 MRCSFCASGIGGKVRNLKASEMVDEVLIMNKDYG------------------KISNIVLM 153
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N+D V K + I ++ G+ R IT+ST G VP I + +E GV L+ISLH
Sbjct: 154 GSGEPFDNYDEVMKFIKIVNNPFGMGIGVRHITISTCGIVPKIYKFADEGLGVNLSISLH 213
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++DLR+ L+PIN+ YP++ LIDACR+Y ++ RITFEY ++K +NDS +L L
Sbjct: 214 APTDDLRSQLMPINKVYPIKDLIDACRYYIDKTHR-RITFEYSLIKSVNDSYDMSLKLSN 272
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +NLIP N Y +D + I+ F ++RSG + +R G DI AACGQ
Sbjct: 273 LLKGLLCHVNLIPVNYVSEIGYEKADNEKIMAFKNVLERSGITCTVRRELGSDIDAACGQ 332
Query: 365 LKSLS 369
L+
Sbjct: 333 LRRKY 337
>gi|153815685|ref|ZP_01968353.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756]
gi|331088258|ref|ZP_08337177.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 3_1_46FAA]
gi|145846926|gb|EDK23844.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756]
gi|330408502|gb|EGG87968.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 3_1_46FAA]
Length = 355
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 119/375 (31%), Positives = 196/375 (52%), Gaps = 31/375 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K+ + EEL++ L ++G R QI++W++V+ F M+++S ++
Sbjct: 6 MRM--KKDIRAYEYEELQKELERLG----EKPFRAKQIYEWLHVKLADRFDEMTNLSVKL 59
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R L + + I ++ + + S DGT K+L R +E+V + K ++C+S
Sbjct: 60 REKLAEEYDIFPVQMAERQQSKLDGTNKFLFRLY-----DGNMVESVLMRYKHGNSVCIS 114
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQ GC + C FC + L RNL+A E+L Q+ + ++G+ ++
Sbjct: 115 SQAGCRMGCVFCASTIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RV 157
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
SN+V+MG GEPL N++N K + I +D GL+ S+R +T+ST G VP I + EE +
Sbjct: 158 SNVVIMGTGEPLDNYNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQIT 217
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLH + + R L+P+ KY L ++ AC Y + RR+TFEY ++ +ND+ D
Sbjct: 218 LALSLHGSTQEKRRKLMPVANKYELGEVLSACDTYFKKT-GRRVTFEYSLVHEVNDTDED 276
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L ++L +NLIP NP + +K + F +++SG + IR G DI
Sbjct: 277 AKELSELLAPRNCHLNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDI 336
Query: 359 LAACGQLKSLSKRIP 373
ACGQL+ +
Sbjct: 337 DGACGQLRRRYEEET 351
>gi|149277498|ref|ZP_01883639.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39]
gi|149231731|gb|EDM37109.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39]
Length = 349
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 130/371 (35%), Positives = 197/371 (53%), Gaps = 24/371 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M KK + + +L+E + + R Q+++W++ + R F MS++S+++
Sbjct: 1 MLTTKKTDIRSLELPQLQEHFKSM----QEPSYRAKQVYQWLWEKSARTFDEMSNLSKDL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L++H++I E+ + + S D T K R +E V IP R T CVSS
Sbjct: 57 RKKLDEHYAINVVEVNNSQFSNDHTIKNAFRLY-----DGNIVEGVLIPMDDRMTACVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSLTC FC TG RNL A+EI QV+L + + ++
Sbjct: 112 QVGCSLTCKFCATGYMDRKRNLNADEIYDQVVLI-------------DQQAKKNYNAPLT 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N+ NV KS+ + GL+ S +RIT+ST+G I ++G++ L
Sbjct: 159 NIVYMGMGEPLLNYANVMKSIERITAPDGLNMSYKRITVSTAGISKMIKKLGDDGAKFNL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++ RN ++PIN L+ L +A ++Y + IT+EY++ ND DA
Sbjct: 219 ALSLHAANDKKRNEIMPINEHNSLKALEEALKYYFSKT-KNPITYEYIVFNDFNDEIEDA 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L K K +P K+NLI +NP +++ + I FS +K G ++ IR RG DI
Sbjct: 278 MELAKFCKHVPCKVNLIEYNPIQFADFINAQGDKIDAFSNYLKSQGVNTNIRRSRGKDID 337
Query: 360 AACGQLKSLSK 370
AACGQL +
Sbjct: 338 AACGQLAVKEQ 348
>gi|218782479|ref|YP_002433797.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans
AK-01]
gi|218763863|gb|ACL06329.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans
AK-01]
Length = 359
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 147/373 (39%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N + +I EEL L + R QI +W+Y R F M+++++ R
Sbjct: 3 NSSDQTDIISCTHEELVRWLADH----KLKPYRAFQILQWVYQRQADSFDVMTNLAKRHR 58
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
LL+ HF+I +I+ + S DG+RK+L + IETV IPEK TLCVS+Q
Sbjct: 59 QLLSDHFTIGRLKILQTQDSSDGSRKFLFQ-----CADGASIETVLIPEKGHHTLCVSTQ 113
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC++ C FC T + L R+L A EI+ Q+ ++ + D + N
Sbjct: 114 VGCAMGCKFCCTASMGLTRSLQANEIISQIRDVQATMED---------------PEHLRN 158
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
+V MGMGEPL N+DNVK+++ I +D GL FS RR+T+ST G VP +A VG++ V LA
Sbjct: 159 LVFMGMGEPLANWDNVKQAMDIITDNDWGLRFSGRRVTISTVGLVPKMAAVGKDTRVKLA 218
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SL+A N++R+ ++P+N+K+P+E L+ AC+ +P L RR+TFEYV+LKG+NDSP A
Sbjct: 219 VSLNAPDNEIRDQIMPVNKKHPIEELLQACKDFP-LRPGRRVTFEYVLLKGVNDSPAHAR 277
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K+L P KINLIP+NP + D + + F + + Y+ +R +GLDI A
Sbjct: 278 KLGKLLAHQPCKINLIPYNPHENSPFERPDPEAVDAFYKVLMDKNYTVIVRHSKGLDIKA 337
Query: 361 ACGQLKSLSKRIP 373
ACGQLK+ ++
Sbjct: 338 ACGQLKAANQAKK 350
>gi|78358007|ref|YP_389456.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|123727640|sp|Q30X35|RLMN_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78220412|gb|ABB39761.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 358
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 139/367 (37%), Positives = 203/367 (55%), Gaps = 25/367 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ + EELE L++ + R QIW+W++ + +RDF M+++S++ R L +
Sbjct: 2 VDILNLTFEELETFLVE---KLGEKKFRARQIWQWLWNKYVRDFDQMTNVSKQTRAQLKE 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCS 125
H I +PE+V S DGT K+LLR +ETV IP + R T C+S QVGC+
Sbjct: 59 HARIFWPEVVTTSKSQDGTTKFLLRL-----ADGALVETVLIPGSQGRITQCLSCQVGCA 113
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TGT RN+T EIL QVL+AR L D + N+V M
Sbjct: 114 MGCTFCATGTLGFERNMTMSEILGQVLVAREYLNDVAERPI------------LRNLVFM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIARVGEEIGVMLAISLH 244
GMGEPL N D + +SL + +GL FS RRIT+ST G + R+GE LA+SLH
Sbjct: 162 GMGEPLLNLDEIMRSLHTLNSELGLQFSPRRITVSTCGVNPEGLRRLGESGLAYLAVSLH 221
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +LR ++P ++ L I+A + YP L RITFEY++L G+NDS A L++
Sbjct: 222 APTQELRRTIMPKAARWELNDFIEALQSYP-LKTRERITFEYLLLGGVNDSLEHAKQLVR 280
Query: 305 ILKGIPAKINLIPFNPWPG--CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ AK+NLI +NP Y ++ I+ F + + ++ IR +G DI AAC
Sbjct: 281 LVSRTKAKLNLIVYNPSGDEADPYAAPTEERILAFEQYLWSKHVTAIIRKSKGADIKAAC 340
Query: 363 GQLKSLS 369
GQLK+
Sbjct: 341 GQLKAAE 347
>gi|150390541|ref|YP_001320590.1| radical SAM protein [Alkaliphilus metalliredigens QYMF]
gi|205829711|sp|A6TRW3|RLMN_ALKMQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|149950403|gb|ABR48931.1| radical SAM enzyme, Cfr family [Alkaliphilus metalliredigens QYMF]
Length = 352
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 131/376 (34%), Positives = 202/376 (53%), Gaps = 30/376 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+ + EE+E L+IG + R Q ++W+ +GI+ ++ M+++S+++
Sbjct: 1 MDKVDLLSLTMEEMESLFLEIG----EKKFRAKQAFQWV-NKGIKQYEEMTNLSKKLIKQ 55
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L++ I + I ++ +S DGT K+L IE V + K T C+S+QV
Sbjct: 56 LSEETRITHNRIEEKFVSKIDGTVKYLFLL-----DDGHIIEGVLMKYKHGFTACISTQV 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC + T L+RNL A E++ Q+LL + G +ISNI
Sbjct: 111 GCAMGCQFCASTTGGLIRNLRAGEMIDQILLMQQ-----------------DQGERISNI 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
V+MG GEPL N+D + L I +D GL+ R ITLST G VP I ++ +I + LAI
Sbjct: 154 VLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLSTCGLVPEIKKLGALQIPINLAI 213
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++ LR +PI +KY ++ LI +C Y +N RITFEY +++ +ND ++A
Sbjct: 214 SLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLENNNR-RITFEYALIEDVNDGEKEAHE 272
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L K+LKG+ +NLIP NP Y S + F + +K +G + IR G DI A
Sbjct: 273 LSKLLKGLLCHVNLIPINPIEERTYQKSKDSQVKKFQQILKSNGIEATIRREMGTDIQGA 332
Query: 362 CGQLKSLSKRIPKVPR 377
CGQL+ +
Sbjct: 333 CGQLRRKYVDDQEKKE 348
>gi|317472521|ref|ZP_07931841.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA]
gi|316899998|gb|EFV21992.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA]
Length = 354
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 122/377 (32%), Positives = 204/377 (54%), Gaps = 31/377 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L M EELE A+ ++G + R QI++W + R M+++ + ++ L +
Sbjct: 2 RDLKSMTLEELELAVKELG----EKKFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + V+ +S DGTRK+L + IE+V + K ++C+SSQ GC
Sbjct: 58 KYEAAELKEVETYVSRIDGTRKYLFQLN-----DGNMIESVLMKYKHGNSVCISSQAGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + L RNL E+L Q+ + G ++SN+V+M
Sbjct: 113 MGCRFCASTLGGLDRNLLPSEMLGQIYYIQK-----------------DTGERVSNVVVM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N++N+ + + + +D GL+ S+R +T+ST G VP I + +E + LAISLH
Sbjct: 156 GTGEPLDNYENLLRFIRLLTDEKGLNLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++++R L+P+ +Y +E L+ AC++Y + RRITFEY ++ +NDSP++A L +
Sbjct: 216 ASNDEMRKSLMPVANQYSMEDLLAACKYYFDRT-GRRITFEYSLVAEVNDSPQNAKELCR 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
L G P +NLIP NP ++ S + + F ++++ + IR G DI AACGQ
Sbjct: 275 FLGGFPCHVNLIPVNPIKERDFRQSMPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQ 334
Query: 365 LKSLSKRIPKVPRQEMQ 381
L+ ++ V +QE++
Sbjct: 335 LRRK--KLNSVEKQEIR 349
>gi|15672161|ref|NP_266335.1| hypothetical protein L184159 [Lactococcus lactis subsp. lactis
Il1403]
gi|81621772|sp|Q9CJ27|RLMN_LACLA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|12723031|gb|AAK04277.1|AE006255_7 hypothetical protein L184159 [Lactococcus lactis subsp. lactis
Il1403]
Length = 365
Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN
Sbjct: 10 RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF + E V + S DGT K+L P + + IETV + + ++CV++QVGC+
Sbjct: 66 EHFILNPLEQVVVQESADGTVKYLFMLPDQMM-----IETVLMRQSYGLSVCVTTQVGCN 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R++TA EI+ Q++L + + + ++S++V+M
Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
G+GEP N++++ L + +D GL+ R IT+ST GF+P + E + + LAISL
Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP A L
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287
Query: 304 KILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A
Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347
Query: 361 ACGQLKSLSKRIPKVP 376
ACGQL+S + K
Sbjct: 348 ACGQLRSKQIKKNKAK 363
>gi|281490670|ref|YP_003352650.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147]
gi|281374439|gb|ADA63960.1| Radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147]
Length = 365
Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN
Sbjct: 10 RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF + E V + S DGT K+L P + + IETV + + ++CV++QVGC+
Sbjct: 66 EHFILNPLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCN 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R++TA EI+ Q++L + + + ++S++V+M
Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
G+GEP N++++ L + +D GL+ R IT+ST GF+P + E + + LAISL
Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP A L
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287
Query: 304 KILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A
Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347
Query: 361 ACGQLKSLSKRIPKVP 376
ACGQL+S + K
Sbjct: 348 ACGQLRSKQIKKNKAK 363
>gi|167757025|ref|ZP_02429152.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402]
gi|237735905|ref|ZP_04566386.1| ribosomal RNA large subunit methyltransferase N [Mollicutes
bacterium D7]
gi|167703200|gb|EDS17779.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402]
gi|229381650|gb|EEO31741.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
D7]
Length = 342
Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 122/363 (33%), Positives = 198/363 (54%), Gaps = 28/363 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ E+L E I + R Q++ W+Y + R F MSD+S+++R+ L
Sbjct: 2 KNIYDYSLEQLTEYFASI----KQKPFRAKQVFSWLYQKDARSFDDMSDLSKDLRNQLKV 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FS+ +I ++++S DGT K+L IE+V + +LCV+SQ+GC++
Sbjct: 58 EFSLDVLKIKEKQVSRDGTIKYLFELL-----DGSLIESVLMIHDYGKSLCVTSQIGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC +G + R+LT EI+ Q++ + + ++S++V+MG
Sbjct: 113 KCTFCASGLLRKQRDLTPGEIVAQIIKVQQDIDQ-----------------RVSHVVVMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEP N+DNV + + I + GL+ R IT+ST G + I R EE I LAISLHA
Sbjct: 156 TGEPFDNYDNVMEFVRIINHPHGLAIGARHITISTCGLIKGIKRYSEEGIQTNLAISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R+ L+PIN+ +P++ L +A Y +N R+TFEY+MLKG+ND A L
Sbjct: 216 ANDEIRDELMPINKVHPMDDLREAISEYIDKTNR-RVTFEYIMLKGVNDDIVYARQLAHY 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ A +NLIP+N Y SD++ + F + R + +R G DI ACGQL
Sbjct: 275 LRGLNAYVNLIPYNSVDEHGYQPSDKETVEIFKNELLRLHINVTLRKEHGRDIDGACGQL 334
Query: 366 KSL 368
++
Sbjct: 335 RAK 337
>gi|253701168|ref|YP_003022357.1| ribosomal RNA large subunit methyltransferase N [Geobacter sp. M21]
gi|251776018|gb|ACT18599.1| radical SAM enzyme, Cfr family [Geobacter sp. M21]
Length = 351
Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 29/374 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K + + + LE + +G R R QI+KW+Y F+ M+++S+E R +
Sbjct: 1 MQKTDIKNLTLQGLESYISGLG----KERFRAKQIFKWLYQLDAGSFEEMTNVSKEFRSM 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + I + S DGTRK+L R +E+V IP++ R TLC+SSQVG
Sbjct: 57 LGEIAQISNLTPEVVEASEDGTRKYLFRL-----FDGSAVESVLIPDEGRNTLCISSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC TG+ L RNLT EI+ QV + + +SNIV
Sbjct: 112 CAMGCAFCLTGSFGLSRNLTTAEIVNQVCAVKR-------------------DQPVSNIV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N + V ++ I +D G FS R++T+STSG VP +A +G V LA+SL
Sbjct: 153 FMGMGEPLANLNGVIPAVQILTDPDGFQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+A ++++R+ ++P+NR+YPL L+ AC+ +P S IT EYVM++ +NDS DA L+
Sbjct: 213 NATTDEVRSRIMPVNRRYPLAELLAACKAFPLPSRRW-ITMEYVMIRDLNDSLEDAKRLV 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++ IP+K+NLIPFN GC++ C Q+ I F + + + R+ RG DI AACG
Sbjct: 272 RLISNIPSKVNLIPFNEHEGCDFKCPTQESIDRFHKYLLDKNVTVITRSSRGSDISAACG 331
Query: 364 QLKSLSKRIPKVPR 377
QLK + R
Sbjct: 332 QLKGRLDQGDGERR 345
>gi|261409887|ref|YP_003246128.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
gi|261286350|gb|ACX68321.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
Length = 353
Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K S+ G+ ++L L + G H + R +Q+W+W+Y + + F M+D+ E L
Sbjct: 1 MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +H++I+ E ++ S DGT K+L + IETV + K ++CV++QVG
Sbjct: 57 LEEHYTILTLEEHTKQESLDGTVKFLFKLV-----DGNLIETVLMRHKFGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+L+A EI+ QV+ + L ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLHLD------------RRGSSERVSHLV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N++N+ + + D GL+ R IT+STSG I + ++GV LAIS
Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++++R ++ IN+ P+E L+ A +Y +N RIT EY++LK +ND AL L
Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTNR-RITLEYILLKDVNDQREHALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+++ + A +NLIP+NP +Y S ++ I F + +K+ G S +R G DI
Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITAFYDTLKKQGISCSVRLEHGTDID 338
Query: 360 AACGQLKSLSKRI 372
AACGQL+S +
Sbjct: 339 AACGQLRSKQIKK 351
>gi|149194715|ref|ZP_01871810.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
gi|149135138|gb|EDM23619.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
Length = 355
Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats.
Identities = 132/362 (36%), Positives = 212/362 (58%), Gaps = 25/362 (6%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
L E LL++GI + R Q++ W+Y + + DF+ MS++ +++R L + F I E++
Sbjct: 8 LPEELLELGI---QPKFRVKQLYNWVYRKYVDDFEKMSNLPKDLREKLKKEFYINPLELI 64
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIET------VYIPEKSRGTLCVSSQVGCSLTCSF 130
+ +I+ DGT K+L + V I+ ++++ T+CVS+QVGC + C+F
Sbjct: 65 NHEIASDGTEKFLFKLNDNHTIETVLIKMKDDRVENGKKKEAKYTVCVSTQVGCKVGCAF 124
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C T VRNL+A EI+ QV + K N+V MGMGEP
Sbjct: 125 CLTAKGGFVRNLSAGEIVAQVWFMKKF--------------KNFDENKALNVVFMGMGEP 170
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
L N++N+ K++ I + + GL+ + RR T+STSG P I ++GEE GV LAISLHAV +
Sbjct: 171 LDNYNNLVKAIKIIAHTDGLNIAPRRQTVSTSGIAPKIKKLGEENLGVNLAISLHAVDDK 230
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR L+P+N+ Y ++ +I+A R +P + +++ FEY+++K +ND+ A L+K+L GI
Sbjct: 231 LREQLIPLNKAYNIQSVIEAIREFP-IDKRKKVMFEYLVIKDVNDNLDSAKKLVKLLNGI 289
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
P+K+NLI FNP+PG + D++ + F + G + IR +G+DI AACGQL+
Sbjct: 290 PSKVNLIYFNPYPGSPFKRPDEETMKKFQRYLLDRGITCTIRQSKGIDISAACGQLREKE 349
Query: 370 KR 371
+
Sbjct: 350 LK 351
>gi|304316971|ref|YP_003852116.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778473|gb|ADL69032.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 343
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 31/365 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L M +ELE+ + IG + R Q+++WIY RG+ +F+ M+D+ E+R LN
Sbjct: 2 VDLKNMTIDELEKFFVDIG----ETKYRAKQVFQWIY-RGVTNFEEMTDLKIELRKKLNS 56
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I +I + +S D T K+L +E V I T C+S+QVGC+
Sbjct: 57 IAYISSLKIAQKLVSDADETAKYLFLL-----DDENIVEGVAIKYSYGNTSCISTQVGCN 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC +G VRNL A E++ +VL+ + G KISNIV+M
Sbjct: 112 MKCSFCASGIGGKVRNLKASEMVDEVLIMDNDYG------------------KISNIVLM 153
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N++ V K + I ++ G+ R IT+ST G VP I E GV L+ISLH
Sbjct: 154 GSGEPFDNYEEVMKFIKIVNNPFGMGVGIRHITISTCGIVPKIYDFANEGLGVNLSISLH 213
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++DLR L+PIN+ YP++ LI AC++Y ++ R+TFEY ++K +ND+ ++ L K
Sbjct: 214 APTDDLRTQLMPINKVYPIKDLIKACKYYIDKTHR-RVTFEYSLIKDVNDNYEMSVKLSK 272
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+ +NLIP N Y +D + I+ F ++++G + +R G DI AACGQ
Sbjct: 273 LLRGLLCHVNLIPINYVDEIGYKKADNEKIIAFKNTLEKNGITCTVRRELGSDINAACGQ 332
Query: 365 LKSLS 369
L+
Sbjct: 333 LRRKY 337
>gi|259047489|ref|ZP_05737890.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
gi|259035680|gb|EEW36935.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
Length = 371
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 129/379 (34%), Positives = 205/379 (54%), Gaps = 26/379 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + GM E L G + R Q+W W+Y + + F+ M+++ + + L
Sbjct: 15 KPIIYGMPLENLTAWFEAKG----EKKFRAGQLWDWLYRKRVTSFEEMTNLPKALIEELQ 70
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F+ ++ S DGTRK+L + IETV +P++ ++CV++QVGC+
Sbjct: 71 EEFTFPVLNERIKQQSTDGTRKFLFEL-----ADGLLIETVLMPQEYGLSICVTTQVGCN 125
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G R+L A EI+ QV+ + L + S G ++S+IV+M
Sbjct: 126 IGCTFCASGIIAKQRDLVAGEIVAQVMHVQRTLDEV------------SPGDRVSHIVVM 173
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+DNV K L + + GL R IT+STSG P I +E V LA+SLH
Sbjct: 174 GIGEPFDNYDNVIKFLKVVNSDKGLGIGARHITVSTSGLAPKIREFADEGLQVNLALSLH 233
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ND R+ ++ INRKYP+E+++DA Y +N R+TFEY+ML +NDS A L
Sbjct: 234 APDNDTRSRIMRINRKYPIEVVMDAINEYIAKTNR-RVTFEYIMLDHVNDSVEQAQQLAD 292
Query: 305 IL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+L K + +NLIP+N +Y S ++ +V F + +K++ + +R G DI AA
Sbjct: 293 LLADKKRLSYVNLIPYNKVREHDQYERSGKERVVAFYDVLKKNHINCVVRKEFGHDIEAA 352
Query: 362 CGQLKSLSKRIPKVPRQEM 380
CGQL+S + + + ++
Sbjct: 353 CGQLRSSQMKRDRAEKTKV 371
>gi|307704572|ref|ZP_07641477.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
gi|307621869|gb|EFO00901.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
Length = 361
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFHADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++TF + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLTFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|260437315|ref|ZP_05791131.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876]
gi|292810227|gb|EFF69432.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876]
Length = 349
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 118/375 (31%), Positives = 190/375 (50%), Gaps = 29/375 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++ + +EL E ++ +G P + R Q+++W++VR + + M++I ++
Sbjct: 1 MELTDIKSFDLDELTEYIVSLGEP----KFRAKQLYEWMHVRLVPGYDEMTNIPASLKAK 56
Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L ++ ++S + T K+L R IE+V + ++C+SSQ
Sbjct: 57 LKENTFYASLYPERVQVSKEDGTSKYLFRLY-----DGNYIESVLMHYHHGDSVCISSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + L RNL E+L Q+ +SL G ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLARNLYPSEMLDQIYRIQSL-----------------TGNRVSNV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEP NFDN K + +D GL+ S R +T+ST G VP I + + + LAI
Sbjct: 155 VVMGSGEPFDNFDNFIKFEKLLTDENGLNISARNLTVSTCGLVPRIYELADMRLQITLAI 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ ++++R L+P+ KY + ++DAC +Y + RRITFEY ++KG ND AL
Sbjct: 215 SLHSPTDEMRKKLMPVANKYSISEIMDACSYYIEKT-GRRITFEYSLVKGENDGSEHALI 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ++KG+ INLIP NP +Y SD K I F + ++++ +R G DI A
Sbjct: 274 LADLVKGMNCHINLIPVNPIKERDYRQSDTKSIKKFKDILEKNRIQVTVRREMGRDIDGA 333
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+
Sbjct: 334 CGQLRKRYMDDNAAK 348
>gi|160945217|ref|ZP_02092443.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii
M21/2]
gi|158442948|gb|EDP19953.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii
M21/2]
gi|295105558|emb|CBL03102.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii
SL3/3]
Length = 346
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 126/373 (33%), Positives = 198/373 (53%), Gaps = 28/373 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K + + EL + L +G P R QI+ W++ + + +F M+D + +
Sbjct: 1 MEQKRCISSLTLAELTDELKALGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + F I P+I + + DGT K+LLR IETV + T+CVS+QV
Sbjct: 57 KLEETFYIAAPQIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + VRNL A EI ++ A+ +G+ +IS+I
Sbjct: 112 GCRMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RISHI 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEPL NFD V + L + G++ R I+LST G VP I ++ E+ + L+I
Sbjct: 155 VLMGIGEPLDNFDEVMRFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSI 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +N +R+ ++P+N YP+E LI R Y + RR++FEY M++G+NDS A
Sbjct: 215 SLHAPTNQIRSSMMPVNDAYPVEQLIQTVRRYQE-TTGRRVSFEYSMVRGVNDSDVCAKQ 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AA
Sbjct: 274 LADLIRGMGAHVNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAA 333
Query: 362 CGQLKSLSKRIPK 374
CGQL+
Sbjct: 334 CGQLRRDEMNGKA 346
>gi|326405757|gb|ADZ62828.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis CV56]
Length = 365
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN
Sbjct: 10 RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF + E V + S DGT K+L P + + IETV + + ++CV++QVGC+
Sbjct: 66 EHFILNTLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCN 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R++TA EI+ Q++L + + + ++S++V+M
Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
G+GEP N++++ L + +D GL+ R IT+ST GF+P + E + + LAISL
Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP A L
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287
Query: 304 KILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A
Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347
Query: 361 ACGQLKSLSKRIPKVP 376
ACGQL+S + K
Sbjct: 348 ACGQLRSKQIKKNKAK 363
>gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster
bacterium]
Length = 358
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 159/379 (41%), Positives = 216/379 (56%), Gaps = 26/379 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K++L G+ + EL+ K+G RT Q KWIY + DF M ++S+E+R
Sbjct: 1 MQNKQNLFGLSQSELDTFFSKLG----EKPYRTKQFMKWIYHQHEFDFNQMLNLSKELRQ 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L Q ++ P+I + + DG KWL+ G IE VYIPEK RGTLC+SSQV
Sbjct: 57 KLLQVATLELPKISSQNFASDGLIKWLIDL-----GSDNHIEMVYIPEKDRGTLCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCSL C+FC TG Q RNLT EI+ Q+++A L +KISN+
Sbjct: 112 GCSLACTFCSTGMQGFNRNLTTAEIIAQIIIANEHLS--------------HENKKISNV 157
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N +V + + D + S+R++T+STSG VP + R+ + V LAIS
Sbjct: 158 VFMGMGEPLLNEKSVYSACDLLLDDLAFGLSRRKVTISTSGVVPALYRMAQTTPVSLAIS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301
LHA ++LR+ LVPIN+KYP+E L+ AC++Y R I FEYVML G+ND+ A
Sbjct: 218 LHAPDDELRDELVPINQKYPIEELMAACKNYLTSGTQERHILFEYVMLDGVNDTMEHAKK 277
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L K+L+GI AK+NLIPFNP+P +Y S I F + + ++G + R RG D+ A
Sbjct: 278 LAKLLRGISAKVNLIPFNPFPKTQYKTSKAFTIKQFQDVLFQAGIRTMTRRTRGEDVDGA 337
Query: 362 CGQLKSLSKRIPKVPRQEM 380
CGQL I K R E
Sbjct: 338 CGQLAGKV--IDKTRRTEN 354
>gi|126663212|ref|ZP_01734210.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
gi|126624870|gb|EAZ95560.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
Length = 346
Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats.
Identities = 121/367 (32%), Positives = 199/367 (54%), Gaps = 24/367 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ + + +E+L + G R +Q+++W++ + F+ M+++S+E R +
Sbjct: 3 IEKKDIRALTKEQLRTFFVSNG----DKAFRGNQVYEWLWSKRAHTFEDMTNVSKETRAM 58
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F I + ++ + S DGT K +R + +E+V IP ++R T CVSSQVG
Sbjct: 59 LQANFVINHIKVDTLQRSEDGTVKNAVRLH-----DDLIVESVLIPTETRTTACVSSQVG 113
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL C+FC T K +RNL EI QV + R +SNIV
Sbjct: 114 CSLDCNFCATARLKRMRNLEPGEIYDQVAAI-------------DNESRLYYDRPLSNIV 160
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N+ NV K++ + + S GL S +RIT+STSG I ++ ++ LA+S
Sbjct: 161 FMGMGEPLMNYPNVMKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAVS 220
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ ++RN ++P + +PL L +A ++ + + ++T+EYV+ KGIND + L
Sbjct: 221 LHSAIEEIRNEIMPFTKSFPLTELREALEYWYRKTKS-KVTYEYVVWKGINDDKKSIDAL 279
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K K +P K+NLI +NP + + + + + +S + +R RG DI AAC
Sbjct: 280 VKFCKYVPCKVNLIEYNPIDDGMFQQASEDATNAYITALAKSNIVAKVRRSRGKDIDAAC 339
Query: 363 GQLKSLS 369
GQL + S
Sbjct: 340 GQLANKS 346
>gi|313205950|ref|YP_004045127.1| 23S rRNA m(2)a-2503 methyltransferase [Riemerella anatipestifer DSM
15868]
gi|312445266|gb|ADQ81621.1| 23S rRNA m(2)A-2503 methyltransferase [Riemerella anatipestifer DSM
15868]
gi|315022263|gb|EFT35291.1| radical SAM enzyme, Cfr family protein [Riemerella anatipestifer
RA-YM]
gi|325336610|gb|ADZ12884.1| Predicted Fe-S-cluster redox enzyme [Riemerella anatipestifer
RA-GD]
Length = 345
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 195/366 (53%), Gaps = 24/366 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + +EL++ + IG R Q++ W++ + + M+++S+ +R + Q
Sbjct: 2 KDIRTLSLDELKDYFISIG----EKPFRAKQVYDWLWSKNGHSIEEMTNLSKNLRERIAQ 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I ++ + S DGT K ++ + +E+V IP +R T CVSSQVGCSL
Sbjct: 58 DFVIKPVKVDLLQKSKDGTIKNGVKLH-----DGLMVESVLIPTDTRTTACVSSQVGCSL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC T K +RNL EI+ QV L + R +SNIV MG
Sbjct: 113 NCEFCATARLKRMRNLEVAEIVDQVALI-------------DQQSKAYFDRPLSNIVFMG 159
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEP+ N+ NV +++ ++ GL S RRIT+STSG I + +E V LA+SLH+
Sbjct: 160 MGEPMMNYKNVVEAIRKITEPEGLGMSPRRITVSTSGIPKMIKMLADENLKVKLALSLHS 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
RN ++P + K+PL ++++ +++ + + IT EY + KGIND+ D LIK
Sbjct: 220 AIESKRNEIMPFSTKFPLTDIMESLQYWYEKTGSI-ITLEYCIWKGINDTDEDIKALIKF 278
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
K +P K+NLI +N +Y S+ K + E ++R G + IR RG DI AACGQL
Sbjct: 279 CKKVPTKVNLIEYNSIGDGKYDRSNPKATQNYVEQLERHGITVMIRRSRGGDIDAACGQL 338
Query: 366 KSLSKR 371
+ S +
Sbjct: 339 ANKSTQ 344
>gi|118578868|ref|YP_900118.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
propionicus DSM 2379]
gi|205829797|sp|A1AL40|RLMN_PELPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|118501578|gb|ABK98060.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter propionicus DSM
2379]
Length = 347
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 150/372 (40%), Positives = 210/372 (56%), Gaps = 30/372 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K L + LE+ L G R R +Q++KWIY R FQ M++IS+++R
Sbjct: 1 MTEKTDLKNLTLPALEQFLRGQG----KERFRATQVFKWIYQHDARSFQEMTNISKDLRA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L I E ++ DGTRK+L +E+V IP++ R TLC+SSQV
Sbjct: 57 ELEAKAYISNLEPEAVEVGGDGTRKYLFGLE-----DGNSVESVLIPDEGRNTLCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C+FC TGT +L RNLT EI+ Q++ R + +I NI
Sbjct: 112 GCAMGCAFCLTGTFRLTRNLTTAEIVNQIMAVRRDV-------------------EIRNI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
VMMGMGEPL N DNV ++ I D GL S RR+T+ST G P + R+G E V LA+
Sbjct: 153 VMMGMGEPLHNLDNVIPAIHIMIDGNGLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAV 212
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL+A +++LR+ ++PINR+YPL+ L+ ACR +P L R++TFEYVML G+ND+ DA
Sbjct: 213 SLNATTDELRDRIMPINRRYPLKELLSACREFP-LPGRRKVTFEYVMLGGLNDTLEDAKR 271
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++ IP K+NLIPFN + GCE+ + I F + + + R RG DI AA
Sbjct: 272 LLRLTSDIPNKVNLIPFNEFQGCEFRSPTRAAIDAFHKYLIDRHVTVITRDSRGSDISAA 331
Query: 362 CGQLKSLSKRIP 373
CGQLK
Sbjct: 332 CGQLKGKLDAAR 343
>gi|94988886|ref|YP_596987.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS9429]
gi|94992778|ref|YP_600877.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS2096]
gi|122986917|sp|Q1JAS5|RLMN_STRPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123382514|sp|Q1JKX6|RLMN_STRPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|94542394|gb|ABF32443.1| radical SAM family enzyme [Streptococcus pyogenes MGAS9429]
gi|94546286|gb|ABF36333.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS2096]
Length = 359
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN
Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELP-----DGMLIETVLMRQHYGHSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L + EI Q++L + D G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L
Sbjct: 221 APNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ K I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSLKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSKTMKKDREK 354
>gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
Length = 371
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 156/388 (40%), Positives = 220/388 (56%), Gaps = 27/388 (6%)
Query: 1 MN-FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
MN KK L + +E+L + +G P R QI WIY GI DF M+D+++E
Sbjct: 1 MNVAAKKTDLKNLTQEQLVRFVESLGQPA----FRGRQILAWIYRPGIIDFTQMTDLAKE 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R +L Q + + + S DG K+ R IE+V IPE+ R TLCVS
Sbjct: 57 FRAILTQSAFMSRFDDCMVECSRDGAVKFAFRL-----DDGQIIESVLIPEEDRNTLCVS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC++ CSFC TG RNLT EI+ QV R + +
Sbjct: 112 SQVGCAMGCSFCLTGAMGFCRNLTTAEIVNQVCAVRDW-------------TLAHDKGLL 158
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+NIV MGMGEPL NFDN+ +++I ++ GL FS RRIT+ST G VP + R+GEE V L
Sbjct: 159 TNIVFMGMGEPLANFDNLLDAIAILTEQRGLDFSNRRITVSTCGLVPQMRRLGEETDVNL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHAV++++R+ L+P+N++YP+ LI+ CR Y +RI FEY +L+GINDS DA
Sbjct: 219 AVSLHAVNDEVRSRLMPVNKRYPIAELIEVCRTY-RQKRRKRIMFEYTLLQGINDSDADA 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L ++L+ +P KINL+ NP G Y ++ ++ F ++ GY+ IRT RG DI
Sbjct: 278 VQLAELLREVPCKINLLAVNPGSGSAYQSPGEERVLCFQRILRDRGYTVFIRTSRGEDIS 337
Query: 360 AACGQLKSL---SKRIPKVPRQEMQITG 384
AACGQL ++ + + +Q TG
Sbjct: 338 AACGQLAGKGWNEEQAISLDKTTLQSTG 365
>gi|255505596|ref|ZP_05347103.3| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
gi|255266841|gb|EET60046.1| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
Length = 354
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 126/378 (33%), Positives = 198/378 (52%), Gaps = 29/378 (7%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ + ++ L + EEL+ L +G R QI++W++ + Q M+++ ++R
Sbjct: 4 DGMNRKDLRSLGYEELQRELEALG----EKPFRAKQIYQWLHEKLADGVQEMTNLPAKLR 59
Query: 62 HLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L+ + E+VD S DGTRK+L R IE+V + ++C+SS
Sbjct: 60 ETLDVRYLCSSLEMVDVLESKADGTRKYLFRLQ-----DGNVIESVLMKYHHGNSVCISS 114
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC + L R+L E+L Q+ + G ++S
Sbjct: 115 QAGCRMGCRFCASTLGGLTRSLLPGEMLDQIYKIQKH-----------------SGERVS 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
N+V+MG GEPL N++N+ K + + SD GL+ S+R IT+ST G VPNI R+ E + L
Sbjct: 158 NVVVMGTGEPLDNYENLVKFIHMLSDEHGLNISQRNITVSTCGIVPNIYRLAAEKLQITL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA + + R L+PI RKY L +++ACR Y + RR+TFEY ++ G+NDS DA
Sbjct: 218 ALSLHAPTQEKRMELMPIARKYELSEVMEACRAYFRET-GRRLTFEYSLVGGVNDSQEDA 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +L G+ +NLIP NP ++ S+++ I F +++ G + IR G DI
Sbjct: 277 RELAVLLDGLNCHVNLIPVNPIKERSFVQSERRVIADFKTKLEKYGINVTIRREMGRDIG 336
Query: 360 AACGQLKSLSKRIPKVPR 377
ACGQL+ +
Sbjct: 337 GACGQLRKSYLDRTEGEE 354
>gi|256830852|ref|YP_003159580.1| Cfr family radical SAM protein [Desulfomicrobium baculatum DSM
4028]
gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM
4028]
Length = 360
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 139/364 (38%), Positives = 217/364 (59%), Gaps = 22/364 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ + ELEEA+ +G H R Q+W+W++ +G+R+F M++++++ R L +
Sbjct: 2 RNILELTCPELEEAVQAMG----HQSFRARQLWQWLWRKGVREFSAMTNLARDFREQLMR 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+++ +PE+ + + S DGT K LLR +ETV IP+K R T C+S Q+GC +
Sbjct: 58 EWALDWPEVHEVQTSSDGTVKLLLRL-----ADGALVETVLIPDKERYTQCLSCQIGCPM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG RN+T EI QVL+AR L +G ++ N+V MG
Sbjct: 113 GCTFCSTGLMGFSRNMTGGEIAAQVLVARDYLR------------AHGLGDEVKNLVYMG 160
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N+D V++SL I S++ GL FS+RRITLST + G E + AISLHA
Sbjct: 161 MGEPLTNWDEVRRSLQILSNAEGLEFSRRRITLSTCAIKGKMDVFGIEGLALPAISLHAP 220
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ ++R L+P ++P+E LI A + L R+T EY+++KG+NDS + A L+++L
Sbjct: 221 TQEIRESLMPGAARWPIEELIAALQG-MELKARERVTIEYILIKGVNDSLQHARQLVRLL 279
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ KINLI +NP PG EY D++ F E +++ G++ +R +G DI AACGQLK
Sbjct: 280 SHLKCKINLIAYNPGPGIEYAAPAPGDVLAFEELLRKKGFTVTLRKSKGQDIAAACGQLK 339
Query: 367 SLSK 370
+ ++
Sbjct: 340 TEAQ 343
>gi|149371549|ref|ZP_01890965.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49]
gi|149355176|gb|EDM43736.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49]
Length = 346
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 191/365 (52%), Gaps = 24/365 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+ + + +EEL + + +G R +Q+++W++ +G F+ M+++S E R L
Sbjct: 4 EKKDIRALTKEELRDFFVALG----DKAFRGNQVYEWLWSKGAHTFEAMTNLSLETRSHL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+F I + ++ + S DGT K ++ + +E+V IP KSR T CVSSQVGC
Sbjct: 60 EANFVINHIKVDSIQRSNDGTIKNAVKLH-----DGLIVESVLIPTKSRTTACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C FC T K +RNL +EI QV+ + +SNIV
Sbjct: 115 SLDCLFCATSRLKRMRNLNPDEIYDQVVAI-------------DKESRLYHNIPLSNIVY 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N+ NV S+ + GL S +RI +STSG I ++ ++ + LA+SL
Sbjct: 162 MGMGEPLMNYKNVLASIEKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDGVRFNLAVSL 221
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ + R ++P + + L+ L DA ++ +N IT+EYV+ K IND D L+
Sbjct: 222 HSAIQETREEIMPFAKSFTLDDLRDALIYWYEKTNR-AITYEYVVWKDINDKKVDIDALV 280
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ +P K+NLI +NP ++ + + + ++++ +R RG DI AACG
Sbjct: 281 RFCAHVPCKVNLIEYNPIDDGKFQQAQDAAVDAYISSLEKARVPVTVRRSRGKDIDAACG 340
Query: 364 QLKSL 368
QL +
Sbjct: 341 QLANK 345
>gi|295100693|emb|CBK98238.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii
L2-6]
Length = 346
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 130/375 (34%), Positives = 200/375 (53%), Gaps = 30/375 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K + + E+L L +G P R QI+ W++ + + DF M+D + +
Sbjct: 1 MEM--KRCISSLTLEQLTAELKAMGQPG----FRAKQIFHWVHQKLVTDFSAMTDQPKAL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L + F I P I + + DGT K+LLR IETV + T+CVS+
Sbjct: 55 LARLEEAFYIAAPIIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVST 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC + VRNL A EI ++ A+ +G+ +IS
Sbjct: 110 QVGCRMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RIS 152
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
+IV+MG+GEPL NFD V + L S G++ R I+LST G VP I R+ E+ + L
Sbjct: 153 HIVLMGIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDRLAEKKLQLTL 212
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
++SLHA +ND+R+ ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A
Sbjct: 213 SVSLHAPNNDIRSGMMPVNDAYPVEVLMQAVRRYQE-TTGRRVSFEYSMVRGVNDSDACA 271
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I
Sbjct: 272 RQLADLIRGMGAHVNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEIS 331
Query: 360 AACGQLKSLSKRIPK 374
AACGQL+
Sbjct: 332 AACGQLRRDEMNGKA 346
>gi|223940814|ref|ZP_03632646.1| radical SAM enzyme, Cfr family [bacterium Ellin514]
gi|223890519|gb|EEF57048.1| radical SAM enzyme, Cfr family [bacterium Ellin514]
Length = 378
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 118/374 (31%), Positives = 194/374 (51%), Gaps = 14/374 (3%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ EEL+ ++ P R Q+ +W+YV + + M+++ + +R +L +
Sbjct: 3 TDIKSYTSEELQARFKELNQPG----YRVGQLLEWLYVHRVASWDAMTNLPKGLREVLQK 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET---VYIPEKSRGTLCVSSQVG 123
F++ E+V + S D T+K+L + + V I +Y R TLCVS+QVG
Sbjct: 59 EFTLQTLELVRRQGSRDTTQKFLWKLNDGAMIESVLIPANPALYGEASDRHTLCVSTQVG 118
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-----RK 178
C+ C FC +G + RNL EEI+ Q+L P R
Sbjct: 119 CAYGCKFCASGLEGWKRNLRVEEIVEQILAIERWNAAEEAKGSKPPEANPKPKTTEVTRF 178
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
I+N+V+MGMGEPL N++N+ K+L I + G R+IT+STSG P I ++ ++
Sbjct: 179 INNLVIMGMGEPLANYENLLKALRILNAPWGGGIGARKITISTSGLAPQIRKLADDPLQF 238
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLH ++++RN ++P+N+KYPL+ L AC +Y + ITFEY+++ G+ND
Sbjct: 239 RLAISLHGATDEVRNKIMPVNKKYPLKELTAACEYYQQKKDRM-ITFEYILIAGVNDGLD 297
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L ++ + AK+NLIP+N + + F +++ + +R +G D
Sbjct: 298 QVKPLAQLAHRLNAKVNLIPYNKVEDLTWERPTEAAQEAFLATLEKERVVATLRREKGHD 357
Query: 358 ILAACGQLKSLSKR 371
I AACGQL+ ++R
Sbjct: 358 IDAACGQLRLKTER 371
>gi|187778899|ref|ZP_02995372.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC
15579]
gi|187772524|gb|EDU36326.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC
15579]
Length = 348
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 29/366 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+K E+++ + EEL+E L+ + R QI+ WIY + I DF M +I ++ ++L
Sbjct: 5 VKMENILDLTLEELKEWLVS----KEEKAFRAKQIFNWIYDKLIFDFNNMKNIPEKTKNL 60
Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L +F I P++V + IS T K+L + IE+V + K ++CVS+QV
Sbjct: 61 LYDNFYIGVPKVVKKLISQDKNTYKFLFEYK-----DGNIIESVVMKYKHGNSICVSTQV 115
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+
Sbjct: 116 GCRMGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNV 158
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
V+MG GEPL NF NV K L + L+ +R ITLST G VP I + ++ + LAI
Sbjct: 159 VLMGSGEPLDNFGNVTKFLDSVTSENTLNIGQRHITLSTCGIVPKIKELADKNYNITLAI 218
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ + LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A
Sbjct: 219 SLHSPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKE 277
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L+G +NLIP N Y S K+I +F +K +G + IR G DI AA
Sbjct: 278 LSSVLRGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAA 337
Query: 362 CGQLKS 367
CGQL+
Sbjct: 338 CGQLRR 343
>gi|255533736|ref|YP_003094108.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366]
gi|255346720|gb|ACU06046.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366]
Length = 348
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 126/370 (34%), Positives = 195/370 (52%), Gaps = 24/370 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K + + +L++ + + P R Q+++W++ + R F MS++ +++
Sbjct: 1 MPATNKIDIRSLDLSQLQQHFIAMQEPA----YRAKQVYQWLWEKSARSFAEMSNLPKDL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L+ ++I E+ +IS D T K R +E V IP R T CVSS
Sbjct: 57 RAKLDAQYAINVVEVNKSQISNDHTIKNAFRLY-----DGNIVEGVLIPMDDRMTACVSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSLTC FC TG RNL A+EI QV+L + + ++
Sbjct: 112 QVGCSLTCKFCATGYMDRKRNLNADEIYDQVVLI-------------DQQAKKNYNAPLT 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
NIV MGMGEPL N+ NV KS+ + GL+ S +RIT+ST+G I ++G++ + L
Sbjct: 159 NIVYMGMGEPLLNYANVLKSIERITAPDGLNMSYKRITVSTAGISKMIKKLGDDGVKFNL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++ RN ++PIN L+ L ++ ++Y + +T+EY++ ND DA
Sbjct: 219 ALSLHAANDKKRNEIMPINEHNSLKALAESLKYYFAKT-KNPVTYEYIVFNHFNDEIEDA 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L K K +P K+NLI +NP +++ ++ I FS +K G ++ IR RG DI
Sbjct: 278 MELAKFCKHVPCKVNLIEYNPIQFADFINAEGDKIDAFSNYLKSQGITTNIRRSRGKDID 337
Query: 360 AACGQLKSLS 369
AACGQL
Sbjct: 338 AACGQLAVKE 347
>gi|227824650|ref|ZP_03989482.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
sp. D21]
gi|226905149|gb|EEH91067.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
sp. D21]
Length = 352
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 197/374 (52%), Gaps = 28/374 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+ ++G+ E++++ L +G+ + R Q+++WIY +G F+ M+++S+E R L
Sbjct: 1 MTKKEILGLTLEQMQDEFLALGL----KKFRAEQVFRWIYEKGATTFEEMTNLSKENRSL 56
Query: 64 LNQHFSI--IYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L +SI +++ S T K LL +ETV + + C+SS
Sbjct: 57 LEGTYSILSGAVKVLRTYDSADRLTHKVLLGLS-----DGASVETVLMHHDYGYSACLSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C+FC +G +RNLTA EIL Q+ +L G ++S
Sbjct: 112 QVGCAMNCTFCASGLHGFMRNLTAGEILAQLYYFDHVL--------------LPKGERVS 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
IV+MG GEP+ N DNV +L + G S R +T+ST G VP I + + + L
Sbjct: 158 RIVIMGSGEPMLNLDNVLAALDLMHHDKGQCISYRNMTISTCGIVPGIEEMTRQGRTINL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA + LR+ L+PIN KYP +IDA Y N R++ +EY++L GIND DA
Sbjct: 218 AVSLHAATGALRDRLMPINGKYPFPEVIDAASRY-EKMNGRQVMYEYILLAGINDREEDA 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L + L G +NLIP NP P + + +D+ F + +K+ + +R G DI
Sbjct: 277 RALAEALSGKECVVNLIPANPVPEKGFRRPEDRDVDRFFQYLKKRHINVTVRKEMGKDIN 336
Query: 360 AACGQLKSLSKRIP 373
AACGQL++ +
Sbjct: 337 AACGQLRASQLKEE 350
>gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|81741588|sp|Q8D1Y5|RLMN_WIGBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 382
Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats.
Identities = 158/374 (42%), Positives = 221/374 (59%), Gaps = 23/374 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +++G REEL + +KIG + R QI KWIY R D M+D S+ +++ L
Sbjct: 24 KKINILGKTREELYDFFIKIG----EEKFRAEQIMKWIYKRYCDDVSLMTDFSKNLKNKL 79
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I + +I E IS DGT KW+L+ + IETVYIPE +R TLC+SSQ+GC
Sbjct: 80 KNIIKIDHLDIESENISQDGTIKWVLKINDQN------IETVYIPEINRATLCISSQIGC 133
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL + EI+ Q+ A ++ D + +KI+NIVM
Sbjct: 134 ALNCKFCATSYQGFNRNLNSYEIISQIWYAMKIINDRNNFKL----------KKITNIVM 183
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N N+ ++ I D+ G SKRRIT+ST+G P I ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKLGKLIDVKLAISLH 243
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302
A ++ +RN ++PIN+KY ++ ++ + + Y +N +I+ EY+ML IND A L
Sbjct: 244 APNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDKTEHAYQL 303
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
I LK IP KINLIP+NP+P +Y CS+ I F + + + G ++ IR RG+DI AAC
Sbjct: 304 INCLKNIPCKINLIPWNPFPYVKYKCSNFNKINNFYKILIKHGITTTIRKQRGIDIKAAC 363
Query: 363 GQLKSLS-KRIPKV 375
GQL RI K
Sbjct: 364 GQLSGNVINRINKR 377
>gi|302872121|ref|YP_003840757.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis
OB47]
gi|302574980|gb|ADL42771.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis
OB47]
Length = 344
Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats.
Identities = 121/365 (33%), Positives = 189/365 (51%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + + +EL++ L IG R SQI++W+Y + D +++ E+R +
Sbjct: 2 KKLIKDLTFDELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREKIG 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I +I+ + S + K+L G IE+V++P + +CVS+QVGC
Sbjct: 58 DEFLINSLQILQHQ-SDGESIKFLFEL-----GDKNGIESVFLPYRYGNAICVSTQVGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + VRNL+A E++ Q++ + G++I+N+V+M
Sbjct: 112 MNCRFCASAIGGFVRNLSAGEMVDQIINVENF-----------------TGKRITNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N +NV K + I + G + R IT+ST G I R+ + V LAISLH
Sbjct: 155 GSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N LR+ LVP+N+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L +
Sbjct: 215 APNNRLRDKLVPMNKKYPVEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIECAEELGQ 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG +NLIP NP + ++ I F E ++ IR G I AACGQ
Sbjct: 274 MLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACGQ 333
Query: 365 LKSLS 369
L+
Sbjct: 334 LRRRY 338
>gi|255656559|ref|ZP_05401968.1| radical SAM protein [Clostridium difficile QCD-23m63]
gi|296449989|ref|ZP_06891753.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
gi|296878370|ref|ZP_06902378.1| cfr family radical SAM enzyme [Clostridium difficile NAP07]
gi|296261259|gb|EFH08090.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
gi|296430668|gb|EFH16507.1| cfr family radical SAM enzyme [Clostridium difficile NAP07]
Length = 343
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 200/367 (54%), Gaps = 28/367 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK L +EL+E + I R SQI+ WIY +G + F+ M++I + +R+ L
Sbjct: 4 KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFEDMNNIPKSLRNKL 58
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I + +I + S K L IETV + SR T+CVS+QVGC
Sbjct: 59 EEISCIGHIDIELKLESKVDNTKKYLFLLD----DGNIIETVMMDYDSRVTVCVSNQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L+RNL EIL QV+ + G+++SN+V+
Sbjct: 115 RMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLVL 157
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG GEPL NF+N K+ L I ++ GL+ R ITLST G VP + + + EI + LA+SL
Sbjct: 158 MGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALSL 217
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ ++ R ++P+ Y ++ ++DACR+Y +N R+TFEY ++KG+NDS ++A L
Sbjct: 218 HSPYDEERRKIMPVANAYSIKEILDACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKALA 276
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG+ +NLIP N EY D+ I F + ++++ + +R G DI ACG
Sbjct: 277 KLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGACG 336
Query: 364 QLKSLSK 370
QL+ K
Sbjct: 337 QLRRKYK 343
>gi|126700199|ref|YP_001089096.1| radical SAM protein [Clostridium difficile 630]
gi|255101744|ref|ZP_05330721.1| radical SAM protein [Clostridium difficile QCD-63q42]
gi|255307613|ref|ZP_05351784.1| radical SAM protein [Clostridium difficile ATCC 43255]
gi|123066578|sp|Q182S0|RLMN_CLOD6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|115251636|emb|CAJ69469.1| putative radical SAM-family protein [Clostridium difficile]
Length = 343
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 199/367 (54%), Gaps = 28/367 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK L +EL+E + I R SQI+ WIY +G + F M++I + +R+ L
Sbjct: 4 KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKL 58
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I + +I + S K L IETV + SR T+CVS+QVGC
Sbjct: 59 EEVSCIGHIDIELKLESKVDNTKKYLFLLD----DGNIIETVMMDYDSRVTVCVSNQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L+RNL EIL QV+ + G+++SN+V+
Sbjct: 115 RMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLVL 157
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG GEPL NF+N K+ L I ++ GL+ R ITLST G VP + + + EI + LA+SL
Sbjct: 158 MGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALSL 217
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ ++ R ++P+ Y +E +++ACR+Y +N R+TFEY ++KG+NDS ++A L
Sbjct: 218 HSPYDEERRKIMPVANAYSIEEILNACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKALA 276
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG+ +NLIP N EY D+ I F + ++++ + +R G DI ACG
Sbjct: 277 KLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGACG 336
Query: 364 QLKSLSK 370
QL+ K
Sbjct: 337 QLRRKYK 343
>gi|302392191|ref|YP_003828011.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
5501]
gi|302204268|gb|ADL12946.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
5501]
Length = 350
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 144/370 (38%), Positives = 207/370 (55%), Gaps = 24/370 (6%)
Query: 3 FLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
K LI ELE + ++G R QI+ WIY +G +F+ M+++SQ +R
Sbjct: 1 MTDKAELISFDLTELENFINNELG----EASFRAEQIFNWIYKQGAVNFEEMTNLSQGLR 56
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSS 120
L I + S DGT K+L EIETV++P + R ++CVS+
Sbjct: 57 SRLQSKAYIQQLTEITRAKSEDGTVKFLFELEDNK-----EIETVFLPYQDGRNSICVST 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C+FC TG Q L RNLT EI+ Q+L + L+G + IS
Sbjct: 112 QVGCGMGCNFCATGQQGLERNLTTGEIVSQILKVQQLMGSNGYDPSL-----------IS 160
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
N+V MGMGEPL N+DN + + I + L+ S RRIT+ST G VP I R+ + E+ ++L
Sbjct: 161 NVVFMGMGEPLANYDNFLRVIDILNSEKALNISMRRITVSTCGLVPQIKRLADKELQLVL 220
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLHA + LR+ ++PIN++YPLE LI AC +Y +N RITFEY ++ G+N+ +DA
Sbjct: 221 AISLHAAEDKLRSEMMPINKRYPLEELIAACEYYLQKTNR-RITFEYALVDGVNNRRQDA 279
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L G+ +NLIP NP ++K I F E + R + +R RG DI
Sbjct: 280 EKLAQLLSGLLCHVNLIPVNPVKELGLTRPNRKAIKEFKEILDRHNIQATVRQERGNDIE 339
Query: 360 AACGQLKSLS 369
AACGQL++ +
Sbjct: 340 AACGQLRTEN 349
>gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98]
Length = 358
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 153/364 (42%), Positives = 207/364 (56%), Gaps = 26/364 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ L + ELE AL G R QI++W+Y RG+ D Q M+D+S+ +R
Sbjct: 1 MTTRPDLAELEPGELEAALDARGFE----RFHARQIYRWVYKRGVTDLQRMTDLSRALRG 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L+ F+ P +V +++S DGTRK+LL IE V+IP+ T C+S+QV
Sbjct: 57 VLDTDFTASSPRVVTDELSVDGTRKFLLAL-----ADGKRIEAVFIPDTPAMTFCISTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG LVRNLTA EI QV + + G NI
Sbjct: 112 GCAMACGFCLTGKMGLVRNLTAGEIAGQVRVLAAATGLADQAF---------------NI 156
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MGMGEPL N+DN K+L + GLS S RR+TLST G VP + R+ E LA+
Sbjct: 157 VLMGMGEPLHNYDNTMKALRMLHSEHGLSISPRRVTLSTVGIVPGLERLAREPLMPNLAV 216
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +++ R+ LVP NRKYPL +I AC+ +P L RITFEYV+L G+NDSP DA
Sbjct: 217 SLHATTDEQRSALVPPNRKYPLADIIAACQRFP-LKQRSRITFEYVLLDGVNDSPEDARR 275
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++L GI AK+NLIP NP PG + + F++ + + +R RG DI AA
Sbjct: 276 LVRLLAGIRAKVNLIPLNPAPGIPFERPSDARVDRFAQILADRHLTVSVRKSRGQDIRAA 335
Query: 362 CGQL 365
CGQL
Sbjct: 336 CGQL 339
>gi|300854446|ref|YP_003779430.1| hypothetical protein CLJU_c12600 [Clostridium ljungdahlii DSM
13528]
gi|300434561|gb|ADK14328.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 345
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 121/369 (32%), Positives = 192/369 (52%), Gaps = 29/369 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EEL+ + R QI WIY G DF M++I +++ L +
Sbjct: 3 NILDFDMEELKSWMRDN----CESEFRAKQIMDWIYKNGQCDFDNMTNIPKKLLEKLKTN 58
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I E+V + S T K+L + +ETV + K ++C+S+QVGC +
Sbjct: 59 FYIGTTELVKKCESKFRDTFKFLYEYK-----DGNMVETVVMKYKHGNSICISTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + +VRNLTA E+L Q+L +++ +G+ +ISNIV+MG
Sbjct: 114 GCKFCASTIDGMVRNLTAGEMLGQILKSQNEIGE-----------------RISNIVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
GEPL N++NV K L I + + +R ITLST G VP I + ++ + LAISLHA
Sbjct: 157 SGEPLDNYENVLKFLKIVNSEYSFNIGQRHITLSTCGIVPKIKDLADRDLQITLAISLHA 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R ++PI KY ++ +IDAC++Y + R++FEY ++ G+NDS + L ++
Sbjct: 217 PNDVMRKKIMPIANKYSIKDVIDACKYYIDKTGK-RVSFEYALVSGVNDSLKCCDELTEL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ G+ +NLIP N S D+ F + ++ + IR G DI AACGQL
Sbjct: 276 ISGLLCHVNLIPVNEVKENNLKKSSSDDVKKFYHRLIKNKIETTIRREMGSDIDAACGQL 335
Query: 366 KSLSKRIPK 374
+ + K
Sbjct: 336 RRSYLKSKK 344
>gi|116511012|ref|YP_808228.1| hypothetical protein LACR_0188 [Lactococcus lactis subsp. cremoris
SK11]
gi|123025653|sp|Q032R6|RLMN_LACLS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|116106666|gb|ABJ71806.1| 23S rRNA m(2)A-2503 methyltransferase [Lactococcus lactis subsp.
cremoris SK11]
Length = 365
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 211/376 (56%), Gaps = 27/376 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN
Sbjct: 10 RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVFIDKLN 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + E V + S DGT K+L P + V IETV + + ++CV++QVGC+
Sbjct: 66 EAFILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTTQVGCN 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R++TA EI+ Q++L + + + ++S++V+M
Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
G+GEP N++++ L + +D GL+ R IT+ST GF+P + E + + LAISL
Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP A L
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287
Query: 304 KILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A
Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347
Query: 361 ACGQLKSLSKRIPKVP 376
ACGQL+S + K
Sbjct: 348 ACGQLRSKQIKKNKAK 363
>gi|227872151|ref|ZP_03990521.1| Fe-S-cluster redox protein [Oribacterium sinus F0268]
gi|227842009|gb|EEJ52269.1| Fe-S-cluster redox protein [Oribacterium sinus F0268]
Length = 359
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 115/372 (30%), Positives = 190/372 (51%), Gaps = 34/372 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ + EL+ + G P R Q++ W++ + + ++ M++I + +R L +
Sbjct: 13 KNIRDLELIELKSLCKEEGFPA----YRAEQLFSWLHEKAVEEYTEMTNIPKAMREKLAE 68
Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+S+ PE S D T K+L R +IE+V++ + + C+S+QVGC
Sbjct: 69 GYSVALPEADLHLCSKMDDTEKFLFRLS-----DGHKIESVFMRYQHGNSACISTQVGCR 123
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L RN T E+L Q+ L G++IS++V+M
Sbjct: 124 MGCAFCASTLDGLARNCTTGEMLGQIYAMEKL-----------------TGQRISHVVLM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
G GEPL N++ V + L I SD G + S R ITLST G VP I + +E + LA+SLH
Sbjct: 167 GSGEPLDNYEEVTRFLRIISDEKGKNLSIRNITLSTCGLVPRIYDLAKENYGITLALSLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++ R ++PI +Y L ++ A + Y + RR++FEY ++ G+ND D L
Sbjct: 227 APTDEQRRKIMPIANRYSLSEIMPAVKEYFKKT-GRRVSFEYALVLGVNDGEEDRKALAD 285
Query: 305 ILK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+LK P +NLIP NP + D+K + F E +++ G + +R G DI
Sbjct: 286 LLKGEKGEHFPCHVNLIPVNPIKERTFAPPDRKRVYAFQEYLQKRGITCTVRREMGADIA 345
Query: 360 AACGQLKSLSKR 371
ACGQL+ +
Sbjct: 346 GACGQLRRDGTK 357
>gi|291522861|emb|CBK81154.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus catus GD/7]
Length = 352
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 201/369 (54%), Gaps = 28/369 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K + M ELE ++ + R QI++W++VR F M+++S+++R
Sbjct: 1 MSDKTDIKSMTLPELEVFTTEV---LGEKKFRAKQIYEWMHVRLADSFDEMTNLSKDLRQ 57
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L++ + + E+V++ +S DGT K+L + IE+V + K ++C+SSQ
Sbjct: 58 KLSEQCVLTHLEMVEKYVSAIDGTAKYLFKLS-----DDRIIESVLMHYKHGNSVCISSQ 112
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C FC + L R + A E+L ++ + G ++SN
Sbjct: 113 VGCRMGCRFCASTLGGLERQMLASEMLDEIYQIQK-----------------DSGERVSN 155
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
+V+MG GEPL N+D + + + I + + GL S+R +T+ST G VP I + + ++ + LA
Sbjct: 156 VVVMGTGEPLDNYDALVRMIDILTHAPGLDISQRNVTVSTCGLVPKIYELADLKLQITLA 215
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHAV+++ R L+PI Y +E ++ ACR+Y +N RITFEY ++KG+NDS DA
Sbjct: 216 ISLHAVNDEKRRELMPIANTYSIEEILKACRYYYSQTNR-RITFEYSLVKGVNDSREDAK 274
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +L+GI INLIP NP Y ++ ++ F +++ G + IR G DI A
Sbjct: 275 ALAALLEGINCHINLIPVNPIEERSYRQTEADAVLKFKNMLEKYGRNVTIRREMGRDIQA 334
Query: 361 ACGQLKSLS 369
ACGQL+
Sbjct: 335 ACGQLRKKY 343
>gi|329926694|ref|ZP_08281104.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|328939034|gb|EGG35400.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 353
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K S+ G+ ++L L + G H + R +Q+W+W+Y + + F M+D+ E L
Sbjct: 1 MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +H++I+ E ++ S DGT K+L + IETV + K ++CV++QVG
Sbjct: 57 LEEHYTILTLEEHTKQESLDGTVKFLFKLV-----DGNLIETVLMRHKFGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+L+A EI+ QV+ + L ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLHLD------------RRGSSERVSHLV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N++N+ + + D GL+ R IT+STSG I + ++GV LAIS
Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++++R ++ IN+ P+E L+ A +Y +N RIT EY++LK +ND AL L
Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTNR-RITLEYILLKDVNDQREHALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+++ + A +NLIP+NP +Y S ++ I F + +K+ G S +R G DI
Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITGFYDTLKKQGISCSVRLEHGTDID 338
Query: 360 AACGQLKSLSKRI 372
AACGQL+S +
Sbjct: 339 AACGQLRSKQIKK 351
>gi|125623071|ref|YP_001031554.1| hypothetical protein llmg_0194 [Lactococcus lactis subsp. cremoris
MG1363]
gi|205829781|sp|A2RHR3|RLMN_LACLM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|124491879|emb|CAL96800.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069818|gb|ADJ59218.1| ribosomal RNA large subunit methyltransferase N [Lactococcus lactis
subsp. cremoris NZ9000]
Length = 365
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 127/376 (33%), Positives = 211/376 (56%), Gaps = 27/376 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN
Sbjct: 10 RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVFIDKLN 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + E V + S DGT K+L P + V IETV + + ++CV++QVGC+
Sbjct: 66 EAFILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTTQVGCN 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R++TA EI+ Q++L + + + ++S++V+M
Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
G+GEP N++++ L + +D GL+ R IT+ST GF+P + + + + LAISL
Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHDNLQINLAISL 228
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP A L
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287
Query: 304 KILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A
Sbjct: 288 DLIKSRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347
Query: 361 ACGQLKSLSKRIPKVP 376
ACGQL+S + K
Sbjct: 348 ACGQLRSKQIKKNKAK 363
>gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 315
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 148/331 (44%), Positives = 194/331 (58%), Gaps = 18/331 (5%)
Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW +
Sbjct: 1 KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD----- 55
Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
+ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G
Sbjct: 56 -QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 114
Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
+ R I+N+VMMGMGEPL N NV ++ I D G SKRR+TL
Sbjct: 115 ----------AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTL 164
Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
STSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E + A R Y SNA
Sbjct: 165 STSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNA 224
Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y S I F
Sbjct: 225 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRF 284
Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
S+ + G+++ +R RG DI AACGQL
Sbjct: 285 SKVLMSYGFTTIVRKTRGDDIDAACGQLAGD 315
>gi|28210911|ref|NP_781855.1| ribosomal RNA large subunit methyltransferase N [Clostridium tetani
E88]
gi|75542526|sp|Q895P8|RLMN_CLOTE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|28203350|gb|AAO35792.1| florfenicol resistance protein [Clostridium tetani E88]
Length = 349
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 127/376 (33%), Positives = 199/376 (52%), Gaps = 30/376 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+L+ + E+L++ +++ + R Q+ W+Y +G+ +F+ M +I + + +
Sbjct: 1 MFNMINLLDLSLEDLKKWMIEN----KEKEFRAKQVLDWVY-KGVYNFEAMKNIPKVITN 55
Query: 63 LLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L ++F + P +V + +S + T K+L + IE+V + K T+CVS+Q
Sbjct: 56 KLQENFYLSVPSVVQKYVSKDESTVKFLFK-----YNDGNIIESVVMKYKHGNTICVSTQ 110
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C+FC + +VR+L+ EIL QVL A+ G +ISN
Sbjct: 111 VGCKMGCTFCASTIGGIVRSLSHGEILGQVLKAQE-----------------ETGERISN 153
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
IVMMG GEPL N+DN + + + GL+ +R ITLST G VP I ++ EE + LA
Sbjct: 154 IVMMGSGEPLDNYDNSLNFIRMVNAENGLNIGQRHITLSTCGIVPKIRQLAEENLQITLA 213
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHA ++++R +PI Y +E LI+AC +Y +N RITFEY ++ +ND A
Sbjct: 214 ISLHAPNDNIRRKTMPIASVYSVEELIEACNYYINKTNR-RITFEYALVSNLNDKEVHAE 272
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +LKG+ +NLIP N ++ S I FS + +SG + IR G DI A
Sbjct: 273 ELATLLKGMLCHVNLIPVNKIDEKDFKSSSTNRIKNFSNILLKSGIQTTIRREMGSDINA 332
Query: 361 ACGQLKSLSKRIPKVP 376
ACGQL+ +
Sbjct: 333 ACGQLRRRYVKNNSKE 348
>gi|333001958|gb|EGK21524.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
Length = 336
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 149/343 (43%), Positives = 199/343 (58%), Gaps = 19/343 (5%)
Query: 42 IYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101
+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW +
Sbjct: 1 MYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------Q 54
Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
+ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G
Sbjct: 55 RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-- 112
Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
+ R I+N+VMMGMGEPL N +NV ++ I D G SKRR+TLST
Sbjct: 113 --------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLST 164
Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR- 280
SG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y SNA
Sbjct: 165 SGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 224
Query: 281 -RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
R+T EYVML +ND A L ++LK P KINLIP+NP+P Y S I FS+
Sbjct: 225 GRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSK 284
Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381
+ G+++ +R RG DI AACGQL R + R+ MQ
Sbjct: 285 VLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 327
>gi|299821377|ref|ZP_07053265.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601]
gi|299817042|gb|EFI84278.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601]
Length = 367
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 127/384 (33%), Positives = 211/384 (54%), Gaps = 26/384 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K S+ G+ E+L + L++ + R QIW W+Y + +R F M+++ +E L
Sbjct: 1 MSKSSIYGITLEKLTDWLVE----RDQKGFRAKQIWDWLYRKRVRSFAEMTNVPKETLAL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + F + E + S DGT K+L + IETV + +K ++CV++QVG
Sbjct: 57 LEESFVMETLEKEIIQESKDGTTKYLFKLQ-----DGNLIETVLMKQKYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+L+A EI+ Q++ + L D ++S+IV
Sbjct: 112 CNIGCTFCASGILKKSRDLSAGEIVEQIMNVQYYLDD------------RGSDERVSHIV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N++N+ L + + GL+ R IT+STSG P I +E V LAIS
Sbjct: 160 VMGIGEPFDNYENLMNFLHVVNSDSGLAIGARHITVSTSGLAPKIKEFADEDLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ INR + +E L++A +Y +N R+TFEY+MLK +ND ++A L
Sbjct: 220 LHAPNNELRTQIMRINRTFSIETLMEAIEYYIEKTNR-RVTFEYIMLKDVNDHVKEAEEL 278
Query: 303 IKILKGI--PAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++ A +N+IP+NP +Y S ++ I F +K++G + +R G DI
Sbjct: 279 AQLIRPYSQLAYVNMIPYNPVAEHIDYERSTEESINAFYHVLKKNGINCVVRREHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL+S + + + +
Sbjct: 339 AACGQLRSKQIKRVGIRERMRRAA 362
>gi|219847237|ref|YP_002461670.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
aggregans DSM 9485]
gi|219541496|gb|ACL23234.1| radical SAM enzyme, Cfr family [Chloroflexus aggregans DSM 9485]
Length = 361
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 124/374 (33%), Positives = 189/374 (50%), Gaps = 28/374 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+++ L EL E L G P R Q+++ +YV + M+D+ +R
Sbjct: 1 MEQRCLYDYNLAELTELLKAWGEP----PFRARQLYRHLYVNLTASVERMTDLPTTLRRR 56
Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + + + +I G TRK L R P +ETV + R T+CVS+Q
Sbjct: 57 LAE-LPLSTLRLERVQIGDAGLTRKALFRLP-----DGAVVETVLMVYPDRSTVCVSTQA 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L+RNL++ EI+ Q + A L +++N+
Sbjct: 111 GCGMGCVFCATGRLGLLRNLSSGEIVAQAIWASQELRAMNAAGPSG---------RVTNL 161
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEP N+D +++ D G + R +T+ST G V I R+ E + LAI
Sbjct: 162 VFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAI 221
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + LR+ L+P+NR+YP+ L+ A R Y + RR++FEYV+L+G ND P A+
Sbjct: 222 SLHAPDDTLRSELMPVNRRYPIAELMAATRQYIAKT-RRRVSFEYVLLQGKNDHPHQAIA 280
Query: 302 LIKILK------GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L ++L+ I +NLIP+NP PG S+ + + F + + G +R RG
Sbjct: 281 LARLLRREAPPGPILVHVNLIPWNPVPGTPLGRSEWERVNAFQQILTDYGIPCTVRVERG 340
Query: 356 LDILAACGQLKSLS 369
++I AACGQL +
Sbjct: 341 VEIAAACGQLAGQT 354
>gi|139439867|ref|ZP_01773232.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC
25986]
gi|133774795|gb|EBA38615.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC
25986]
Length = 350
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 118/375 (31%), Positives = 192/375 (51%), Gaps = 29/375 (7%)
Query: 1 MNFLKK-ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
MN K + + + + ++ E + ++G P R Q+ +W++ + + F M+++ +
Sbjct: 1 MNPRTKSQDIRDLSQNDIRELVAELGQPA----FRAKQLIEWVFEKNVCSFDDMTNLPKA 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R L + F+ P + +++S DG+RK+LL V +ETV +P +++ ++CVS
Sbjct: 57 FREQLKEAFAFDTPTELTKQVSKDGSRKYLLE-----YHDGVSVETVGMPRRNKLSVCVS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+Q GC + C+FC TG L R+LTA+EI+ QVL + G+ +
Sbjct: 112 TQAGCGMGCAFCATGLNGLKRSLTAQEIVDQVLHVSNDFGE-----------------RA 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
+++V MG GEP N+D V K+L I +D G+ R +T+STSG +P I + +
Sbjct: 155 TSVVFMGQGEPFANYDEVLKALRILNDPDGIGIGARHLTVSTSGVIPGIRKFADIPEQFT 214
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLH+ RN L+P +KY L L +A + Y + RR T+EY M++G+ND+ +
Sbjct: 215 LAVSLHSAIQSTRNKLMPGVKKYTLFRLHEALQLYTEKT-GRRPTYEYAMIEGVNDTNPE 273
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L +G +NLI N G S + ++ G + IR RG DI
Sbjct: 274 MQALCDFCEGTLCHVNLIQLNDIEGSPLKPSPIHKVEDLQRRLESRGIETTIRNSRGNDI 333
Query: 359 LAACGQLKSLSKRIP 373
AACGQLK K
Sbjct: 334 DAACGQLKQRFKVQK 348
>gi|75376338|sp|Q6XK03|RLMN_SPICI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|34396189|gb|AAP55653.1| unknown [Spiroplasma citri]
gi|110005241|emb|CAK99567.1| conserved hypothetical upf0063 transmembrane protein [Spiroplasma
citri]
Length = 345
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 136/365 (37%), Positives = 213/365 (58%), Gaps = 27/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ G +EEL+ L+ G + QI+ WIYV+ I F M++IS+ R+ L +
Sbjct: 2 TSIFGYPKEELQLDLVAHGF----KKYLAEQIFDWIYVKNIYSFDEMTNISKTDRNKLQE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+++I +IV ++ S D T K+L + +IETV +P+ ++CV++QVGC++
Sbjct: 58 YYTIEPLKIVVQQQSKDWTVKFLFQL-----ADGYKIETVLMPQSYGNSVCVTTQVGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC +G K RNL+ EI+ QV++ L + ++S+IV+MG
Sbjct: 113 ACTFCASGLLKKTRNLSTAEIVQQVMMVNRYLA--------------TTNERVSHIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
+GEP NFDN K ++I +D G R IT+ST G VP I + E + V LAISLHA
Sbjct: 159 IGEPFDNFDNTLKFVNIINDPKGYQIGARHITISTCGLVPKIKQFAELKTQVNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N +RN L+PIN+ YP+E L+DA R+Y L+N R+TFEY++++ +NDS AL L K+
Sbjct: 219 PNNTIRNQLMPINKAYPVEKLMDAVRYYIELTNR-RVTFEYILIENVNDSRETALELAKL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G+ A +NLIP+N + S I F E +++ + +R G DI AACGQL
Sbjct: 278 IRGLNAYVNLIPYNTVAENGHQRST--KINKFFETLQQQKINCIVRREFGHDIDAACGQL 335
Query: 366 KSLSK 370
++ ++
Sbjct: 336 RAKNE 340
>gi|312134889|ref|YP_004002227.1| radical sam enzyme, cfr family [Caldicellulosiruptor owensensis OL]
gi|311774940|gb|ADQ04427.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor owensensis OL]
Length = 344
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 120/365 (32%), Positives = 190/365 (52%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + +EL++ L IG R SQI++W+Y + D +++ E+R ++
Sbjct: 2 KRLIKDLTFDELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREKID 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I +I++ + S + K+L + IE+V++P + +CVS+QVGC
Sbjct: 58 DEFLINSLQILEHQ-SDGKSIKFLFELCDKNG-----IESVFLPYRYGNAICVSTQVGCK 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + VRNL+A E++ Q++ + G++I+N+V+M
Sbjct: 112 MNCRFCASAIGGFVRNLSAGEMVDQIINVENF-----------------TGKRITNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N +NV K + I + G + R IT+ST G I R+ + V LAISLH
Sbjct: 155 GSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N LR+ LVP+N+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L +
Sbjct: 215 APNNRLRDKLVPMNKKYPVEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIECAEELGQ 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG +NLIP NP + ++ I F E ++ IR G I AACGQ
Sbjct: 274 MLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACGQ 333
Query: 365 LKSLS 369
L+
Sbjct: 334 LRRRY 338
>gi|229828531|ref|ZP_04454600.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM
14600]
gi|229793125|gb|EEP29239.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM
14600]
Length = 392
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 127/368 (34%), Positives = 200/368 (54%), Gaps = 29/368 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+++ + M EEL + +G + R Q+++WI+ R D+ MS++S+++R
Sbjct: 38 MRRIDIKSMNLEELTAYVEAMG----EKKFRARQLYEWIHRRQAADWDEMSNLSRDLRGR 93
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + + + D +IS DGTRK+L +E+V +P ++C+SSQV
Sbjct: 94 LMREADLTVLQEADCQISRLDGTRKYLFALS-----DGNMVESVLMPYHHGNSVCISSQV 148
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + +RNLT E+L Q+ + + ++SN+
Sbjct: 149 GCRMGCRFCASTIDGWLRNLTPAEMLDQIYRIQRDSKE-----------------RVSNL 191
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V+MG GEPL NFDNV K + + SD GL+ S+R IT+ST G VP I + + + + LAI
Sbjct: 192 VLMGTGEPLDNFDNVVKLIGLVSDENGLNISQRNITVSTCGIVPRIRELADLNLSITLAI 251
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA S + R L+PI +Y L+ ++DACR+Y + RR+TFEY ++ G+NDS DA
Sbjct: 252 SLHASSQETRRKLMPIAERYDLKEILDACRYYFSRT-GRRLTFEYALVAGVNDSREDAAR 310
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L + +NLIP NP + SD++ ++ F +++ G + IR G DI A
Sbjct: 311 LAGLLGDLNCHVNLIPVNPIKERNFHQSDRRALLAFRTQLEKYGVNVTIRREMGRDIDGA 370
Query: 362 CGQLKSLS 369
CGQL+
Sbjct: 371 CGQLRRRK 378
>gi|170757229|ref|YP_001782049.1| radical SAM protein [Clostridium botulinum B1 str. Okra]
gi|205829641|sp|B1IIL7|RLMN_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|169122441|gb|ACA46277.1| radical SAM enzyme, Cfr family [Clostridium botulinum B1 str. Okra]
Length = 342
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 132/362 (36%), Positives = 202/362 (55%), Gaps = 29/362 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ +
Sbjct: 3 NILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDN 58
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I P++V + +S T K+L + IE+V + K ++CVS+QVGC +
Sbjct: 59 FYIGVPKVVKKLMSQDKNTYKFLFEYK-----DGNIIESVVMKYKHGNSICVSTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+MG
Sbjct: 114 GCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH+
Sbjct: 157 SGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L +
Sbjct: 217 PEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSTV 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQL
Sbjct: 276 LKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQL 335
Query: 366 KS 367
+
Sbjct: 336 RR 337
>gi|225010483|ref|ZP_03700954.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C]
gi|225005312|gb|EEG43263.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C]
Length = 353
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 128/366 (34%), Positives = 196/366 (53%), Gaps = 24/366 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + + +E L + G R +Q+++W++ +G F+ M++IS+E R L
Sbjct: 7 KKDIRALDKEALRTFFVTQGQSA----FRGNQVYEWLWQKGAHSFESMTNISKETRAFLE 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HF I + + + S DGT K +R + +E+V IP K+R T CVSSQVGCS
Sbjct: 63 THFVINHIRVDQMQRSNDGTIKNAVRLH-----DNLVVESVLIPTKTRTTACVSSQVGCS 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T K +RNL +EI QV+ + R +SNIV M
Sbjct: 118 LDCKFCATSRLKRMRNLQPDEIYDQVVAI-------------DQQSRLYFNRPLSNIVFM 164
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GMGEPL N++NV K++ +D GL+ S +RI +STSG I ++ E+ + LA+SLH
Sbjct: 165 GMGEPLMNYNNVLKAIEKITDPEGLAMSPKRIIVSTSGVPKMIRKMAEDGVKFKLAVSLH 224
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + +R ++P N +PL L +A + + + + RIT+EYV+ KGIND+ L++
Sbjct: 225 SAIDSVRTTIMPFNETFPLAQLREALQFWYEKTKS-RITYEYVVWKGINDNKAAIDALVE 283
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K PAK+NLI +NP + + Q I + ++R + +R RG DI AACGQ
Sbjct: 284 FCKFAPAKVNLIEYNPIDDGMFSQASQAAIDAYVNTLERHNITCTVRRSRGKDIDAACGQ 343
Query: 365 LKSLSK 370
L +
Sbjct: 344 LANKQD 349
>gi|257461212|ref|ZP_05626310.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
gi|257441586|gb|EEV16731.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
Length = 369
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 136/376 (36%), Positives = 209/376 (55%), Gaps = 32/376 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ +ELE + + R QI++WIY + + DF M ++ +E+R L Q
Sbjct: 2 KNIFDFTMKELENFV--------EPKFRAKQIYEWIYKKNVDDFAQMLNLPKEIRQSLAQ 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARC--------IGGPVEIETVYIPEKSRGTLCV 118
+F + + V + S DG+ K+L + + E I +R ++CV
Sbjct: 54 NFYLDPLKCVRSETSSDGSIKYLFALKDGKTIESVLLPMKDELRDENEKIIRHARYSICV 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + CSFC T VRNLT EI+ Q+ L + + R+
Sbjct: 114 SSQVGCKIGCSFCLTAKGGFVRNLTPGEIVAQIWLIKKM-------------NAIPYERR 160
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
+ N+V MGMGEPL N DNV K++ I ++ GL+ + RR T+STSG I ++G ++GV
Sbjct: 161 V-NVVYMGMGEPLNNLDNVAKAVQILKENDGLAIAPRRQTISTSGLSTQIKKLGEMDLGV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+LAISLHAV ++LR L+PINR Y + ++ A R +P + +R+ FEY+M+ G+ND P
Sbjct: 220 LLAISLHAVDDELREKLMPINRAYNIASIMQAVREFP-IDLRKRVMFEYLMIDGVNDRPS 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L+K+L GI AK+NLI FNP G + ++++ F + + G + IR +GLD
Sbjct: 279 DAKTLVKLLHGIRAKVNLIYFNPHEGSSFGRPSPENMIKFQDYLCAHGITCTIRQSKGLD 338
Query: 358 ILAACGQLKSLSKRIP 373
I AACGQLK +++
Sbjct: 339 ISAACGQLKQRNEQGK 354
>gi|168182583|ref|ZP_02617247.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf]
gi|237795945|ref|YP_002863497.1| ribosomal RNA large subunit methyltransferase N [Clostridium
botulinum Ba4 str. 657]
gi|182674240|gb|EDT86201.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf]
gi|229262363|gb|ACQ53396.1| radical SAM enzyme, Cfr family [Clostridium botulinum Ba4 str. 657]
Length = 342
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 132/362 (36%), Positives = 201/362 (55%), Gaps = 29/362 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ +
Sbjct: 3 NILDFTLEELKEWLIS----KEEKGFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDN 58
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I P++V + +S T K+L + IE+V + K ++CVS+QVGC +
Sbjct: 59 FYIGVPKVVKKLMSQDKNTYKFLFEYK-----DGNVIESVVMKYKHGNSICVSTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+MG
Sbjct: 114 GCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL NF NV K L + + L+ +R ITLST G VP I + ++ + LAISLH+
Sbjct: 157 SGEPLDNFKNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L +
Sbjct: 217 PEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSTV 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQL
Sbjct: 276 LKGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAACGQL 335
Query: 366 KS 367
+
Sbjct: 336 RR 337
>gi|77919618|ref|YP_357433.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
carbinolicus DSM 2380]
gi|123729427|sp|Q3A2Z4|RLMN_PELCD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|77545701|gb|ABA89263.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter carbinolicus DSM
2380]
Length = 371
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 147/368 (39%), Positives = 210/368 (57%), Gaps = 28/368 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ + L EEL E L +G R R Q+ +W+Y R + DF MSD+S+ +
Sbjct: 5 MDQDTRIDLKNFTLEELTEFLAGMG----KERFRAGQVMRWMYHRLVDDFDAMSDLSKVL 60
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L+Q I + S DGTRK+L R V I + +R TLC+S+
Sbjct: 61 RAELHQRARISRLTPEATEDSRDGTRKYLFRLEDGETIESVRIPM----DDNRATLCIST 116
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC+TG+ LVRNLT EI+ QV A ++
Sbjct: 117 QVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAA-------------------LADGPVN 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIV+MGMGEPL N DNV K+L I GL +S R++TLST+G VP + +G+ + V LA
Sbjct: 158 NIVLMGMGEPLHNLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLA 217
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SL+A ++++RN L+P+N++YPL+ L+ ACR YP L +RITFEY++++ +NDS +DA
Sbjct: 218 VSLNATTDEVRNRLMPVNQRYPLQQLMAACRQYP-LHAKKRITFEYILIRDVNDSDQDAR 276
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+K+L GI AK+N+IPFN E+ ++ I F + G + R +G DI A
Sbjct: 277 RLVKLLHGIKAKVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDISA 336
Query: 361 ACGQLKSL 368
ACGQLK
Sbjct: 337 ACGQLKGK 344
>gi|291560509|emb|CBL39309.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
SSC/2]
Length = 343
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 194/368 (52%), Gaps = 29/368 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L M +E++E + IG + R QI++W + M+++ ++++ + Q
Sbjct: 2 DLKSMTLQEMQEYMESIG----EKKFRAKQIYEWFHKHLALSLDEMNNVPKKLKEKIEQT 57
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I + VD IS DGTRK+L IE+V + K ++C+SSQ GC +
Sbjct: 58 QEIYGVKPVDCFISKIDGTRKYLFELY-----DGNIIESVLMKYKHGNSVCISSQAGCRM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + L RNLT E+L Q+ + ++SN+VMMG
Sbjct: 113 GCKFCASTLGGLDRNLTPSEMLSQIYYIQR-----------------DTEERVSNVVMMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP+ N+DNV + L + + GL+ S+R IT+ST G VP I + ++ + LAISLH+
Sbjct: 156 TGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKELAQKHLQITLAISLHS 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++R L+PI KY ++ L+DAC +Y +N R+TFEY ++ G+ND P A L
Sbjct: 216 PNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEYSLVAGVNDQPVHAEELAGR 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG P +NLIP NP ++ S K ++ F + ++++ + IR G DI AACGQL
Sbjct: 275 LKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVTIRREMGADINAACGQL 334
Query: 366 KSLSKRIP 373
+ +
Sbjct: 335 RRKKLQSR 342
>gi|254976171|ref|ZP_05272643.1| radical SAM protein [Clostridium difficile QCD-66c26]
gi|255093561|ref|ZP_05323039.1| radical SAM protein [Clostridium difficile CIP 107932]
gi|255315304|ref|ZP_05356887.1| radical SAM protein [Clostridium difficile QCD-76w55]
gi|255517972|ref|ZP_05385648.1| radical SAM protein [Clostridium difficile QCD-97b34]
gi|255651088|ref|ZP_05397990.1| radical SAM protein [Clostridium difficile QCD-37x79]
gi|260684153|ref|YP_003215438.1| radical SAM protein [Clostridium difficile CD196]
gi|260687812|ref|YP_003218946.1| radical SAM protein [Clostridium difficile R20291]
gi|260210316|emb|CBA64637.1| radical SAM protein [Clostridium difficile CD196]
gi|260213829|emb|CBE05812.1| radical SAM protein [Clostridium difficile R20291]
Length = 343
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 28/367 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK L +EL+E + I R SQI+ WIY +G + F M++I + +R+ L
Sbjct: 4 KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKL 58
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I +I + S K L IETV + SR T+CVS+QVGC
Sbjct: 59 EEVSCIGNIDIELKLESKVDNTKKYLFLLD----DGNIIETVMMDYDSRVTVCVSNQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L+RNL EIL QV+ + G+++SN+V+
Sbjct: 115 RMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLVL 157
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG GEPL NF+N K+ L I ++ GL+ R ITLST G VP + + + EI + LA+SL
Sbjct: 158 MGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALSL 217
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ ++ R ++P+ Y +E +++ACR+Y +N R+TFEY ++KG+NDS ++A L
Sbjct: 218 HSPYDEERRKIMPVANAYSIEEILNACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKALA 276
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG+ +NLIP N EY D+ I F + ++++ + +R G DI ACG
Sbjct: 277 KLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGACG 336
Query: 364 QLKSLSK 370
QL+ K
Sbjct: 337 QLRRKYK 343
>gi|312910636|ref|ZP_07769477.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516]
gi|311289012|gb|EFQ67568.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516]
Length = 360
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 130/368 (35%), Positives = 212/368 (57%), Gaps = 26/368 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L
Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG
Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+ NV L +D GL+ R IT+STSG VP I + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+L K + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338
Query: 360 AACGQLKS 367
AA GQ++S
Sbjct: 339 AAFGQIRS 346
>gi|332799418|ref|YP_004460917.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
sp. Re1]
gi|332697153|gb|AEE91610.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
sp. Re1]
Length = 343
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 30/366 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K +L + ++EE + ++G P R QI+KWIY +G +F+ M+D+S+++
Sbjct: 1 MEKTNLKSLTLTQMEEFIKQLGEPV----YRAKQIFKWIY-KGQTEFEKMTDLSKDLIAR 55
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + +I + S D T K++ +E+V + T C+SSQV
Sbjct: 56 LKDCAYVGKIDIYKKYESEIDETTKYVFALE-----DGQMVESVKMKYSFGTTACISSQV 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCS+ C+FC + +VRNL E+ +V+ KIS +
Sbjct: 111 GCSMGCAFCASTEGGMVRNLAWWEMADEVIAIEK-----------------DSNVKISRV 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL N+D + + L I + + + S RR+T+ST G VP I R+ EE + LA+
Sbjct: 154 VVMGSGEPLLNYDELIQFLRILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPITLAV 213
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++D+R+ L+PIN +YP+ L+DAC++Y + RRITFEY+++ IND+ + A
Sbjct: 214 SLHAPNDDIRSSLMPINERYPILQLLDACKYYI-MKTKRRITFEYILISDINDTEQCACE 272
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +LK + +NLIP NP G ++ SD I F + + +G S+ +R G DI AA
Sbjct: 273 LSNLLKDLLCHVNLIPLNPVEGKKFKKSDDSRIRKFEQILLNNGISATVRREMGSDINAA 332
Query: 362 CGQLKS 367
CGQL+
Sbjct: 333 CGQLRR 338
>gi|312130260|ref|YP_003997600.1| 23S rRNA m(2)a-2503 methyltransferase [Leadbetterella byssophila
DSM 17132]
gi|311906806|gb|ADQ17247.1| 23S rRNA m(2)A-2503 methyltransferase [Leadbetterella byssophila
DSM 17132]
Length = 368
Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 199/366 (54%), Gaps = 24/366 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK+ L + E+L+ L ++G P R QI +W++ + Q M+++S+ +R L
Sbjct: 25 KKKDLRKVKWEDLQAWLKQVGEPA----FRAKQIREWLWQKSAWSIQDMTNLSKSLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
F I + + S DGT K + +E V IP +R T C+SSQVGC
Sbjct: 81 EAEFEIRPVTVHTAQYSADGTIKSGFKLY-----DGHLVEGVLIPTDTRMTACISSQVGC 135
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SLTC FC TG RNL A EI QV+L ++ + + ++NIV
Sbjct: 136 SLTCKFCATGYMNRERNLDAAEIYDQVILIKNQAEE-------------RYSQPLTNIVY 182
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N+ V +S+ + GL++S +RIT+ST+G I ++G++ + LA+SL
Sbjct: 183 MGMGEPLLNYAAVLESVERITSPEGLNWSPKRITVSTAGIAKMIKKLGDDGVKFNLALSL 242
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++ RN ++PIN L+ L +A +++ + +IT EY++ G ND DA L+
Sbjct: 243 HAANDEKRNTIMPINESNSLKNLSEALQYFYKKT-GNKITLEYIVFHGFNDKIADAKELL 301
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ +K +P+K+N+I +NP ++ +D + I F++ ++ + + IR RG DI AACG
Sbjct: 302 EFVKRVPSKVNIIEYNPISEANFVNADPEAIDKFAKYLEDNRVTVNIRRSRGKDIDAACG 361
Query: 364 QLKSLS 369
QL
Sbjct: 362 QLAIKE 367
>gi|197118042|ref|YP_002138469.1| ribosomal RNA large subunit methyltransferase N [Geobacter
bemidjiensis Bem]
gi|197087402|gb|ACH38673.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 351
Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 139/375 (37%), Positives = 209/375 (55%), Gaps = 29/375 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K + + + LE + +G R R QI+KW+Y F+ M+++S+E R +
Sbjct: 1 MQKTDIKNLTLQGLESYISGLG----KERFRAKQIFKWLYQMDAGSFEEMTNVSKEFRVM 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + I + S DGTRK+L R +E+V IP++ R TLC+SSQVG
Sbjct: 57 LGEIAQISNLTPEVVEASEDGTRKYLFRLS-----DGSAVESVLIPDEGRNTLCISSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC TG+ L RNLT EI+ QV + + ++NIV
Sbjct: 112 CAMGCAFCLTGSFGLSRNLTTAEIVNQVCAVKR-------------------DQPVNNIV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N V ++ I +D G FS R++T+STSG VP +A +G V LA+SL
Sbjct: 153 FMGMGEPLANLKGVIPAVQILTDPDGFQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+A ++++R+ ++P+NR YPL L+ AC+ +P S IT EYVM++ +NDS DA L+
Sbjct: 213 NATTDEVRSRIMPVNRTYPLAQLLAACKAFPLPSRRW-ITMEYVMIRDLNDSLEDAKRLV 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++ IP+K+NLIPFN GC++ C Q+ I F + + + R+ RG DI AACG
Sbjct: 272 RLISNIPSKVNLIPFNEHEGCDFKCPTQESIDRFHKYLLDKNVTVITRSSRGSDISAACG 331
Query: 364 QLKSLSKRIPKVPRQ 378
QLK + R
Sbjct: 332 QLKGRLDQEDGERRN 346
>gi|149010606|ref|ZP_01831977.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae
SP19-BS75]
gi|147765087|gb|EDK72016.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae
SP19-BS75]
Length = 361
Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLPHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + +IS+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|332702335|ref|ZP_08422423.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
africanus str. Walvis Bay]
gi|332552484|gb|EGJ49528.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
africanus str. Walvis Bay]
Length = 362
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 133/380 (35%), Positives = 204/380 (53%), Gaps = 21/380 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ K +L+ + +EL + ++ R R R Q+W+W++ +G+ DF+ MS++S+ +
Sbjct: 1 MDT--KINLLDLSLDELRGFIAEL----REPRFRAEQVWQWMWQKGVSDFEEMSNVSKAL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L +H I P I + S DGT K+LLR IETV +P ++ T C+S+
Sbjct: 55 RGKLAEHAVIRPPTIDTVRESDDGTVKFLLRL-----ADGALIETVLLPSRTHYTQCLST 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C+FC TGT L RNL EI QVLL R L + E R +
Sbjct: 110 QVGCAMGCAFCSTGTMGLARNLAHSEICGQVLLGRKWLEQKNSQDKGE--------RSLR 161
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V MGMGEPL N+D + KSL D FS RR+T+ST+G + + LA
Sbjct: 162 NLVFMGMGEPLMNYDTLVKSLHTLRDDKAFGFSSRRMTVSTAGVPGRMTELVTSGLARLA 221
Query: 241 ISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+SLHA + +LR ++P + +PL L++ + P L R TFEY+++ G+ND+ + A
Sbjct: 222 VSLHAPTQELRERIMPRAARMHPLPALMEELKKLP-LRPQERTTFEYILIGGLNDTQQHA 280
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+++L + AKINLI NP + + I F + ++ G + +R +G DI
Sbjct: 281 RELVRLLSHVRAKINLIACNPAKDSPFAAPTMEAIEAFQQVLRDKGLVAMLRKSKGQDIE 340
Query: 360 AACGQLKSLSKRIPKVPRQE 379
AACGQL + ++ Q
Sbjct: 341 AACGQLVTQKQKEQARTEQA 360
>gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
Length = 371
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 128/362 (35%), Positives = 195/362 (53%), Gaps = 25/362 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SL+ + +EL E + P+ R Q+W+ IY + D + M+ + + +R +L+
Sbjct: 19 KSLLDLSLQELREWIRLRDYPE----YRAVQVWQAIYRQLEVDPEKMTSLPKALREVLSA 74
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V ++ T K L + G + R T+CVSSQ GC+
Sbjct: 75 EFPFPNITPVRTFVADGGDTEKVLFQLED----GNAIESVLMEYMDGRATVCVSSQAGCA 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG RNL+A EI+ Q+L L D G++++NIV M
Sbjct: 131 IGCTFCATGLGGFYRNLSAGEIVYQILYFSKKLRD--------------KGKRLTNIVYM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
GMGEPL N D V +S+ + G++FS RRIT+ST+G V I R ++ V LAISLH
Sbjct: 177 GMGEPLANLDAVWRSVENLHEPTGMNFSARRITISTAGLVHQIDRFPPTDLQVNLAISLH 236
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++DLR ++PINR++P+ LI + + Y ++ RITFEYV++ G N S A +L
Sbjct: 237 APNDDLRTSIMPINRRWPISELIASAKRYVERTHR-RITFEYVLIAGCNSSKEHARDLSN 295
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+ +NLIP N PG + +++ TF + + +G +R RG DILAACGQ
Sbjct: 296 LLRGLLCHVNLIPLNRVPGSPFEPPSTEEVNTFRDILLSAGIPCTVRLERGADILAACGQ 355
Query: 365 LK 366
L+
Sbjct: 356 LR 357
>gi|313899948|ref|ZP_07833450.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
gi|312955256|gb|EFR36922.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
Length = 351
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 128/373 (34%), Positives = 201/373 (53%), Gaps = 25/373 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SL +++ + L+ G + R QI++W+Y + MSD+S++ R L Q
Sbjct: 2 KSLYDFTYDQMGDMALEQGW----KKFRAHQIFQWLYRKRAVSIDDMSDLSKDTRETLKQ 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FS+ ++ D++++ DGT K+L IE+V + ++CV+SQVGC++
Sbjct: 58 QFSLTPLKLRDKQVASDGTTKYLFALE-----DGSLIESVLMQFDYGKSICVTSQVGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC +G K RNLT+ E++ QVL + L ++S+IV+MG
Sbjct: 113 ACAFCASGLTKKKRNLTSGEMVAQVLYVQRDLD--------------KQEDRLSHIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N+++V LS + GL R IT+ST G VP I +E LAISLHA
Sbjct: 159 TGEPFDNYEHVMNFLSTVNHDRGLGIGARHITISTCGVVPKIYEFAKEHTQYNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+LR+ L+P+NR YPLE L++A ++Y +N R+TFEY++L+G+ND L K+
Sbjct: 219 PNNELRDRLMPVNRAYPLEELMEAIQYYARENNR-RLTFEYILLRGVNDQKEHVAQLAKL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ A +NLIP+N + D + F + + + G IR G DI AACGQL
Sbjct: 278 LKGLNAYVNLIPYNAVDENGFQGVDHAHAMVFYDALMKQGVRCTIRKEHGADIDAACGQL 337
Query: 366 KSLSKRIPKVPRQ 378
+ + + +
Sbjct: 338 RVKHLKKEQEGSR 350
>gi|222529035|ref|YP_002572917.1| ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor bescii DSM 6725]
gi|222455882|gb|ACM60144.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor bescii DSM
6725]
Length = 341
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 124/365 (33%), Positives = 191/365 (52%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + +EL++ L IG RTSQI++W+Y + D +++ E+R +
Sbjct: 2 KRLIKDLTFDELKKWLENIG----EKPFRTSQIFEWLYKKNATDVMQFTNLPLELREKIE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I +I+ + S + K+L + +E+V++P + +CVS+QVGC
Sbjct: 58 DEFLINSLQILKHQ-SDGESIKFLFELCDKNG-----VESVFLPYRYGNAICVSTQVGCK 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + VRNL+A E++ Q++ + G++I+N+V+M
Sbjct: 112 MNCRFCASAIGGFVRNLSAGEMVDQIINVENF-----------------TGKRITNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISLH
Sbjct: 155 GSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L K
Sbjct: 215 APNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELGK 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG +NLIP NP + ++ I F E +K + IR G I AACGQ
Sbjct: 274 MLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKVFFETLKSYQINVTIRRELGSSISAACGQ 333
Query: 365 LKSLS 369
L+
Sbjct: 334 LRKRY 338
>gi|149180610|ref|ZP_01859114.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1]
gi|148851763|gb|EDL65909.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1]
Length = 358
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 130/379 (34%), Positives = 206/379 (54%), Gaps = 26/379 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ ++L +++ G + R +QIW W+Y + + +F M +I L
Sbjct: 1 MEKNSIYGLTIDQLTSWIVENG----EKKFRAAQIWDWLYKKRVTNFADMKNIGANCITL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++F + + ++ S DGT K+L + IETV + ++CV++QVG
Sbjct: 57 LEENFHLGTLKEEIKQESKDGTIKFLFKLQ-----DGNLIETVLMKFNYGYSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+L++ EI+ Q++ + L ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKNRDLSSGEIVEQIMNVQLHLD------------SKGNDERVSHIV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N+DN+ L + +D GLS R IT+STSG I +E V LA+S
Sbjct: 160 VMGIGEPFDNYDNLMDFLRVVNDQKGLSIGARHITVSTSGLANRIYDWADENIQVNLAVS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ YPLE L+ A +Y +N RITFEY++L+ +ND +AL L
Sbjct: 220 LHAPNNELRTQIMKINKAYPLEKLMPAIDYYLEKTNR-RITFEYILLQDVNDHKAEALQL 278
Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K+LK + +NLIP+NP Y S ++ IV F + G + +RT G DI
Sbjct: 279 AKLLKNKKHLSYVNLIPYNPVDEHGQYQRSTKEAIVEFYGTLLDQGINCGVRTEHGTDID 338
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL+S + K +
Sbjct: 339 AACGQLRSKQIKKDKEKIR 357
>gi|163848485|ref|YP_001636529.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
aurantiacus J-10-fl]
gi|222526414|ref|YP_002570885.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus sp.
Y-400-fl]
gi|205829697|sp|A9WFY6|RLMN_CHLAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|163669774|gb|ABY36140.1| radical SAM enzyme, Cfr family [Chloroflexus aurantiacus J-10-fl]
gi|222450293|gb|ACM54559.1| radical SAM enzyme, Cfr family [Chloroflexus sp. Y-400-fl]
Length = 376
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 189/374 (50%), Gaps = 28/374 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+++ L EL E L G P R Q+++ +YV R M+D+ +R
Sbjct: 5 MEQRCLYDYNLSELTELLQSWGEPA----FRARQLYRHLYVNLARQVDQMTDLPLALRSR 60
Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + +I +G TRK L R P +ETV + R T+CVS+Q
Sbjct: 61 LAEI-PFSTLRCEQVQIGDNGMTRKALFRLP-----DGAVVETVLMVYPDRSTVCVSTQA 114
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L+RNL++ EI+ Q + A L ++SN+
Sbjct: 115 GCGMGCVFCATGQLGLLRNLSSGEIVAQAIWASQELRAMGMAGPTG---------RVSNL 165
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEP N+D +++ D G + R +T+ST G V I R+ E + LAI
Sbjct: 166 VFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAI 225
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + LR+ L+P+NR+YP+ L+ A R+Y + RR++FEYV+L+G ND P A+
Sbjct: 226 SLHAPDDALRSELMPVNRRYPIADLMAATRNYIAKT-RRRVSFEYVLLQGKNDHPHQAIA 284
Query: 302 LIKILKG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L ++L+ + +NLIP+NP PG S+ + + TF + + G +R RG
Sbjct: 285 LARLLRHSAPRGPLLFHVNLIPWNPVPGTPLGRSEWERVTTFQQILTDYGIPCTVRVERG 344
Query: 356 LDILAACGQLKSLS 369
++I AACGQL
Sbjct: 345 VEIAAACGQLAGRH 358
>gi|312127903|ref|YP_003992777.1| radical sam enzyme, cfr family [Caldicellulosiruptor hydrothermalis
108]
gi|311777922|gb|ADQ07408.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor hydrothermalis
108]
Length = 344
Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats.
Identities = 121/365 (33%), Positives = 190/365 (52%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + +EL + L +G R +Q+++W+Y + D +++ E+R ++
Sbjct: 2 KRLIKDLTIDELRKWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKID 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I +I+ + S + K+L + +E+V++P + +CVS+QVGC
Sbjct: 58 DEFLINSLQILQHQ-SDGESIKFLFELCDKNG-----VESVFLPYRYGNAICVSTQVGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + VRNLT E++ Q++ A + G++I+N+V+M
Sbjct: 112 MNCRFCASAIGGFVRNLTPGEMVDQIINAENF-----------------TGKRITNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISLH
Sbjct: 155 GSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L K
Sbjct: 215 APNNSLRDKLVPINKKYPIEDIMKAVDYYIQRTNR-RVTFEYALIDGVNDSIECAQELGK 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG +NLIP NP + ++ I TF E ++ IR G I AACGQ
Sbjct: 274 MLKGKLVHVNLIPVNPVEEKGFKRPSKEKIKTFFETLRSYQIQVTIRRELGSSISAACGQ 333
Query: 365 LKSLS 369
L+
Sbjct: 334 LRRRY 338
>gi|258515524|ref|YP_003191746.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM
771]
gi|257779229|gb|ACV63123.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM
771]
Length = 349
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 29/373 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++ L+ + ++E +L+ +P + R QI +W++ +G+ F M+++ ++R
Sbjct: 1 MESTGLMDLTLPQIENWVLQEAMP----KFRARQIAEWMFQKGVDSFDQMTNLPLDLRKK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LNQ + +++ +++S K+L + +ETV + + ++CVSSQV
Sbjct: 57 LNQTAYLEDLQVIKKQVSAQTGTVKYLFKLK-----DGQAVETVLMRQVYGLSVCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC ++C C + LVRNL+A EI QV+ + +IS++
Sbjct: 112 GCRMSCRLCASTLSGLVRNLSAGEIYAQVMSVQK-----------------EQSSRISHV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG GEPL NF + ++ + GL+ R ITLST G VP I + E+ + LA+
Sbjct: 155 VIMGSGEPLDNFQHTLAFMTNINADYGLNIGYRHITLSTCGLVPEILALAEKKLPLTLAV 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +N LR+ +VP+NRKYPL++L+ AC+ Y L+ RR++FEY ++KG+ND+ A
Sbjct: 215 SLHAPNNKLRDSIVPVNRKYPLQVLLKACKDYTKLT-GRRVSFEYALIKGLNDTTVCAQE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +LK INLIP NP P + ++I F + +++ G +R G DI AA
Sbjct: 274 LADLLKNFSCHINLIPVNPVPERGLQRTPVQNIQRFKDILEKEGLKVTVRREMGSDIDAA 333
Query: 362 CGQLKSLSKRIPK 374
CGQL+ K
Sbjct: 334 CGQLRHSFVDRRK 346
>gi|148380460|ref|YP_001255001.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC
3502]
gi|153932990|ref|YP_001384683.1| radical SAM protein [Clostridium botulinum A str. ATCC 19397]
gi|153937048|ref|YP_001388204.1| radical SAM protein [Clostridium botulinum A str. Hall]
gi|226949859|ref|YP_002804950.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str.
Kyoto]
gi|205829625|sp|A7FW72|RLMN_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829626|sp|A5I4T4|RLMN_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|148289944|emb|CAL84057.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC
3502]
gi|152929034|gb|ABS34534.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC
19397]
gi|152932962|gb|ABS38461.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. Hall]
gi|226842641|gb|ACO85307.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str.
Kyoto]
Length = 342
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 202/362 (55%), Gaps = 29/362 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ +
Sbjct: 3 NILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDN 58
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + P++V + +S T K+L + IE+V + K ++CVS+QVGC +
Sbjct: 59 FYVGVPKVVKKLMSQDKNTYKFLFEYK-----DGNIIESVVMKYKHGNSICVSTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+MG
Sbjct: 114 GCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH+
Sbjct: 157 SGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L +
Sbjct: 217 PEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSTV 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQL
Sbjct: 276 LKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQL 335
Query: 366 KS 367
+
Sbjct: 336 RR 337
>gi|269127610|ref|YP_003300980.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
gi|268312568|gb|ACY98942.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
Length = 388
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 120/367 (32%), Positives = 181/367 (49%), Gaps = 21/367 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E A+ ++G R Q+ + + R + D M+D+ VR L
Sbjct: 40 RHLADLTPAERRAAVAELG----EKPFRAQQLSRHYFTRLVDDPAQMTDLPAAVREHLAA 95
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ P ++ E + D + R IE+V + R T+CVSSQ GC +
Sbjct: 96 E---LLPTLLTEVRALDCDGGATRKTLWRAF-DGTLIESVLMRYPDRITMCVSSQAGCGM 151
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV+ L +ISNIV MG
Sbjct: 152 NCPFCATGQAGLTRNLSTGEIVEQVVAGARALARGKIAGGPG---------RISNIVFMG 202
Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V ++ +D GL S+R +T+ST G VP IAR+ +E V LA+SL
Sbjct: 203 MGEPLANYKAVLGAIRRITDPAPDGLGISQRSVTVSTVGLVPAIARLADEGLSVRLAVSL 262
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ + ++DA Y + RR++ EY +++ +ND A L
Sbjct: 263 HAPDDELRDELVPVNTRWKVREVLDAAWAYADRT-GRRVSIEYALIRDVNDQAWRADLLG 321
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG +NLIP NP PG ++ S +D F ++ G +R RG +I ACG
Sbjct: 322 RLLKGHLVHVNLIPLNPTPGSKWTASRPRDEREFVARLQAHGVPVTVRDTRGREIDGACG 381
Query: 364 QLKSLSK 370
QL + +
Sbjct: 382 QLAAATD 388
>gi|219854612|ref|YP_002471734.1| hypothetical protein CKR_1269 [Clostridium kluyveri NBRC 12016]
gi|219568336|dbj|BAH06320.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 362
Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats.
Identities = 132/379 (34%), Positives = 205/379 (54%), Gaps = 31/379 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M ++ +++ EELE + + R SQI WIY + DF M++IS+ V
Sbjct: 1 MQYMY--NILNFNIEELENWMK----VNDESKFRASQIMDWIYKKNQYDFNYMTNISKNV 54
Query: 61 RHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
L ++F I PE+++++ S T K+L +F + IETV + + ++CVS
Sbjct: 55 IEKLKKNFYIGIPELIEKQKSKSQDTFKFLYKFQDKN-----IIETVVMKYRHGNSICVS 109
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+QVGC + C FC + +VRNLT+ EIL Q+L +++ + + +I
Sbjct: 110 TQVGCRMGCKFCASTVNGMVRNLTSGEILAQILKSQTEINE-----------------RI 152
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
SNIV+MG GEPL N+DNV K L++ + L+ +R ITLST G VP I + E +
Sbjct: 153 SNIVLMGSGEPLDNYDNVLKFLNMVNSKYSLNIGQRHITLSTCGIVPKIMDLANENLQIT 212
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLH+ N R ++PI KY +E +I AC++Y + RR++FEY ++KG+NDS
Sbjct: 213 LAISLHSPDNFSRRDMMPIANKYSIEEIIYACKYYINKT-GRRVSFEYALVKGVNDSLEF 271
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+++LKG+ +NLIP N ++ S + +I F + + + IR G DI
Sbjct: 272 AERLVQLLKGLLCHVNLIPVNEVKENDFKKSSEDNIKKFYNKLIENKIETTIRREMGSDI 331
Query: 359 LAACGQLKSLSKRIPKVPR 377
AACGQL+ +
Sbjct: 332 DAACGQLRRRYLESKSYRK 350
>gi|307244457|ref|ZP_07526566.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM
17678]
gi|306492150|gb|EFM64194.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM
17678]
Length = 345
Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats.
Identities = 140/369 (37%), Positives = 205/369 (55%), Gaps = 30/369 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L + EEL++ L++IG + R SQI+ WIY R IRDF M++I + +R L
Sbjct: 5 KFVLKNLTEEELKDFLVEIG----EKKFRGSQIYSWIY-RNIRDFDEMNNIPKSLRTKLQ 59
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+H I E S DGT+K+L R IETV + +R T+CVS+QVGC
Sbjct: 60 EHAVIGNIEKDLRLDSKIDGTKKYLFRLN-----DGNIIETVAMDYDTRLTVCVSNQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + L RNL A EIL Q++ + L G+++SNIVM
Sbjct: 115 RMGCRFCASTIDGLSRNLEAWEILDQIIKVQEDL-----------------GKRVSNIVM 157
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG GEPL N++N + L + ++ GL+ R ITLST G V I + + EI + LAISL
Sbjct: 158 MGSGEPLDNYENSIRFLKLVNEKNGLNIGNRHITLSTCGIVDRIRDLADLEIPINLAISL 217
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ ++ R ++P+ KY +E +I+AC +Y G +N RITFEY ++KG+NDS ++A ++
Sbjct: 218 HSPFDEERQKIMPVANKYKVEQIIEACHYYIGKTNR-RITFEYSLIKGVNDSKKEAERIV 276
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG+ +NLIP NP ++ D I F ++++ IR G DI ACG
Sbjct: 277 KLLKGMLCHVNLIPINPIEERDFEKPDILYINKFKAYLEKNNIPVTIRNSMGADISGACG 336
Query: 364 QLKSLSKRI 372
QL+ +
Sbjct: 337 QLRRSVSKR 345
>gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
Length = 365
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 129/372 (34%), Positives = 200/372 (53%), Gaps = 26/372 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+N ++K ++GM E L++ ++IG+ + SQ++ W++ + + DF S+IS++
Sbjct: 11 INTIEKIDILGMDLESLQKKFVEIGL----KKFNASQVFDWLHNKLVFDFDEFSNISKKD 66
Query: 61 RHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R +L + F + E ++S T K+L R IE+V I K+R TLCVS
Sbjct: 67 REILKERFYVAKLEFKTHQVSEDGDTEKFLFELKDR-----RLIESVLISHKNRHTLCVS 121
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQ+GC + C FC T T RNL+ EILLQ + L G K+
Sbjct: 122 SQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKHL--------------LQRGEKL 167
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
N+V MGMGEP N+D V S+++ + G +FSKR T+STSG V I R E +
Sbjct: 168 GNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQIN 227
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLH+V +D+R+ ++PIN+++ ++ L ++ Y + RITFEY+++ +N P D
Sbjct: 228 LAISLHSVKDDVRSEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILIDDLNCEPED 286
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L L +NLIP+NP G Y ++ F + +K + +R +G DI
Sbjct: 287 ARELAGFLNSFSCLVNLIPYNPVGGKPYKRPSKQKQREFYKLLKDKNVNVTLRETKGQDI 346
Query: 359 LAACGQLKSLSK 370
AACGQLK+ +
Sbjct: 347 AAACGQLKAKKQ 358
>gi|237650461|ref|ZP_04524713.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
CCRI 1974]
gi|237821909|ref|ZP_04597754.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
CCRI 1974M2]
Length = 361
Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats.
Identities = 123/375 (32%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|313113578|ref|ZP_07799166.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310624093|gb|EFQ07460.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 346
Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats.
Identities = 125/373 (33%), Positives = 199/373 (53%), Gaps = 28/373 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K + EL L +G P R QI+ W++ + + +F M+D + +
Sbjct: 1 MEQKRCISSFTLAELTAELKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + F I P+I + + DGT K+LLR IETV + T+CVS+QV
Sbjct: 57 KLEESFYIAAPKIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + VR+L A EI ++ A+ +G+ +IS+I
Sbjct: 112 GCRMGCRFCASTQAGRVRDLEAGEICSEIYTAQKDIGE-----------------RISHI 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEPL NFD V K L + G++ R I+LST G VP I ++ E+ + L++
Sbjct: 155 VLMGIGEPLDNFDEVMKFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSV 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +N++R+ ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A
Sbjct: 215 SLHAPNNEIRSGMMPVNDAYPVEVLMQAVRRYQD-TTGRRVSFEYSMVRGVNDSDACARQ 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AA
Sbjct: 274 LANLIRGMGAHVNLIPINPVDGSPYSATDAANVHRFQQKLESLGVNATVRRRLGSEISAA 333
Query: 362 CGQLKSLSKRIPK 374
CGQL+
Sbjct: 334 CGQLRRDEMNGKA 346
>gi|168180611|ref|ZP_02615275.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916]
gi|182668374|gb|EDT80353.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916]
Length = 342
Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 202/362 (55%), Gaps = 29/362 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ +
Sbjct: 3 NILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDN 58
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + P++V + +S T K+L + IE+V + K ++CVS+QVGC +
Sbjct: 59 FYVGVPKVVKKLMSQDKNTYKFLFEYK-----DGNIIESVVMKYKHGNSICVSTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+MG
Sbjct: 114 GCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH+
Sbjct: 157 SGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L +
Sbjct: 217 PEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSIV 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQL
Sbjct: 276 LKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQL 335
Query: 366 KS 367
+
Sbjct: 336 RR 337
>gi|332686368|ref|YP_004456142.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius ATCC 35311]
gi|332370377|dbj|BAK21333.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius ATCC 35311]
Length = 357
Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats.
Identities = 125/371 (33%), Positives = 215/371 (57%), Gaps = 26/371 (7%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ ++K+++ G+ +E L L+ G + R +Q+W+W+Y++ + F+ M+++S+ +
Sbjct: 4 DIMQKQTIYGLTKEALVNWFLENG----EKKFRANQVWEWLYIKRVESFEDMTNLSKTLI 59
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
LL+QHF I + + DGT K+L P + + IETV + ++ ++CV++Q
Sbjct: 60 SLLDQHFVIQVLRQTIIQEAKDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 114
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC++ C+FC +G K RNLTA EI+ Q+++ + +G ++S+
Sbjct: 115 VGCNMGCTFCASGLLKKNRNLTAGEIVAQIMMVQRYFDQ------------RKLGERVSH 162
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+V+MG+GEP N++ + + + I +D GL+ R +T+ST G VP I + + V LA
Sbjct: 163 VVVMGIGEPFDNYEQLMQFIQIINDEKGLAIGARHLTVSTCGLVPQIKKFAQTGLQVNLA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHA +N +R+ ++ IN +P+E L+ Y +N R+TFEY+ML+ +ND P A
Sbjct: 223 ISLHASNNQIRSSIMRINHTFPIEKLMQTIDEYIEQTNR-RVTFEYIMLQKVNDYPEHAQ 281
Query: 301 NLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L +LK A +NLIP+NP + Y S++ ++ F + +K++G + IR G D
Sbjct: 282 ELADLLKDKKKLAYVNLIPYNPVNEHDQYCRSEKASVLKFYDILKKNGINCVIRKEHGTD 341
Query: 358 ILAACGQLKSL 368
I AACGQL+S
Sbjct: 342 IDAACGQLRSK 352
>gi|160893331|ref|ZP_02074118.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50]
gi|156865023|gb|EDO58454.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50]
Length = 361
Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats.
Identities = 120/376 (31%), Positives = 195/376 (51%), Gaps = 28/376 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ +KK + MM +EL + +G P R QI++W++ +GI + M+++ +++
Sbjct: 12 IEDIKKLDIRSMMFDELAVWVKSVGQPA----FRAKQIFEWVHAKGIAHAEDMTNVPKKL 67
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
+ + E+ DGT K+L R +E+V + K ++C+SS
Sbjct: 68 IEEIKKQHMYGVEEVTRLVSKQDGTNKFLFRLQ-----DGNVLESVLMRYKHGNSVCISS 122
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC + L+RNL A E+L Q+ + G ++S
Sbjct: 123 QVGCRMGCRFCASTIGGLIRNLEASEMLDQIYAIERI-----------------TGERVS 165
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV+MG GEPL N+DN+ + + I +D G + S+R IT+S+ G VP I R+ +E +
Sbjct: 166 NIVVMGTGEPLDNYDNLIRFIRIINDEQGKNISQRNITVSSCGLVPQIKRLADEGLSITF 225
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +++ R L+PI KY + L+D CR+Y + RR+TFEY ++K ND+P A
Sbjct: 226 ALSLHSPTDEDRRKLLPIANKYSIAELMDVCRYYFEKT-GRRVTFEYSLVKDENDTPEHA 284
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++LK + +NLIP NP +Y S + F +++ + IR G DI
Sbjct: 285 YKLAELLKNMHGHVNLIPVNPIKERKYCRSLNDSVEKFKYILEKKDINVTIRRSMGRDID 344
Query: 360 AACGQLKSLSKRIPKV 375
AACGQL+ +
Sbjct: 345 AACGQLRRKYEEAKDT 360
>gi|83816743|ref|YP_446232.1| radical SAM protein [Salinibacter ruber DSM 13855]
gi|294508165|ref|YP_003572223.1| Conserved hypothetical protein containing radical SAM domain
[Salinibacter ruber M8]
gi|123753375|sp|Q2S0P9|RLMN_SALRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|83758137|gb|ABC46250.1| radical SAM enzyme, Cfr family [Salinibacter ruber DSM 13855]
gi|294344493|emb|CBH25271.1| Conserved hypothetical protein containing radical SAM domain
[Salinibacter ruber M8]
Length = 369
Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 196/372 (52%), Gaps = 22/372 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ L M R L++ + + G P R R Q++ W+Y +G+ DF MS++ + +R L
Sbjct: 16 DRVDLKTMGRAGLKDFVAEHGAP----RYRGDQLFNWVYGKGVSDFDRMSNLPKRMRRGL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVG 123
+ ++ EIV+++ + D T K L P+ V I + E R T+CVSS+VG
Sbjct: 72 QRDATVEDIEIVEQQQAADRTVKALFELPSGREAETVLIPAIDERGEARRLTVCVSSEVG 131
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG NLT I QV + + GR ++NIV
Sbjct: 132 CAMGCEFCATGRMGFRENLTPGAIFDQVWHMNEVAQE-------------HFGRPVTNIV 178
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N+D V S+SI +D L+ S ++IT+ST G I + ++ LA+S
Sbjct: 179 FMGMGEPLLNYDAVLDSISILTDEDSLNLSAQKITVSTVGLARRIKDLADDQLRTNLAVS 238
Query: 243 LHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
LHA N+ R+ ++P+N K L L +A ++Y + + IT+EY + KG+NDS DA
Sbjct: 239 LHAPDNETRSRIMPVNEAEKTSLPALKEALQYYFDKTGRQ-ITYEYCLFKGVNDSETDAR 297
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
NL + + P+K+NL+ +NP G + + + + F + + + G + +R RG DI A
Sbjct: 298 NLADVTRWAPSKVNLLMYNPVEGLNFERTSEAQLDRFVQVLVQEGVTVTVRRSRGQDIDA 357
Query: 361 ACGQLKSLSKRI 372
ACGQL + +
Sbjct: 358 ACGQLANEGEDA 369
>gi|225847963|ref|YP_002728126.1| ribosomal RNA large subunit methyltransferase N
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644008|gb|ACN99058.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 353
Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats.
Identities = 138/369 (37%), Positives = 207/369 (56%), Gaps = 29/369 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L + +ELE +++ G P + R QI KW+Y + + F M+D+S+E+R L +
Sbjct: 2 INLKNLNFKELENFVVENGWP----KFRAKQIAKWLYNKKVESFDQMTDLSKEIRQTLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I +++ + S DG+ K+L + IETV I EK+ TLCVS+QVGC+
Sbjct: 58 KCEINSLKLLTYQQSKIDGSIKFLWQLK-----DGNTIETVLINEKNHKTLCVSTQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FCYT L+RNL EI+ Q + + LGD +ISNIV M
Sbjct: 113 VGCKFCYTTKDGLIRNLETAEIVDQYINVQRFLGD-------------EEENRISNIVYM 159
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAIS 242
GMGEPL N+DNVKKS+ I + S R+IT+S+SG + I R+ E+ V LA+S
Sbjct: 160 GMGEPLANYDNVKKSVQIFTHPDMCKLSHRKITISSSGILHQIKRMFEDKDFPQVKLAVS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A R+ L+PI++ LE L+D R P L RIT EYV++K +ND+ DA L
Sbjct: 220 LNASHQSQRSYLMPISQTNTLEDLMDLLRKLP-LKPGWRITLEYVLIKNVNDTVEDAKRL 278
Query: 303 IKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ ++K K+NLIPFNP+PG ++ ++ ++ F + + + ++ IR +G DI A
Sbjct: 279 VNLIKKDKHRFKVNLIPFNPYPGSDFERPEESRVLAFEKVLWDNNIATFIRWSKGRDIDA 338
Query: 361 ACGQLKSLS 369
ACGQL+
Sbjct: 339 ACGQLRKKE 347
>gi|170759295|ref|YP_001787821.1| radical SAM protein [Clostridium botulinum A3 str. Loch Maree]
gi|205829629|sp|B1KX56|RLMN_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|169406284|gb|ACA54695.1| radical SAM enzyme, Cfr family [Clostridium botulinum A3 str. Loch
Maree]
Length = 342
Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 200/362 (55%), Gaps = 29/362 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ +
Sbjct: 3 NILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDN 58
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I P++V + +S T K+L IE+V + K ++CVS+QVGC +
Sbjct: 59 FYIGVPKVVKKLMSQDKNTYKFLFE-----YNDGNIIESVVMKYKHGNSICVSTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+MG
Sbjct: 114 GCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL NF NV + L + + L+ +R ITLST G VP I + ++ + LAISLH+
Sbjct: 157 SGEPLDNFKNVTEFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L +
Sbjct: 217 PEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSTV 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQL
Sbjct: 276 LKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQL 335
Query: 366 KS 367
+
Sbjct: 336 RR 337
>gi|317121759|ref|YP_004101762.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
DSM 12885]
gi|315591739|gb|ADU51035.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
DSM 12885]
Length = 448
Score = 335 bits (858), Expect = 8e-90, Method: Composition-based stats.
Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 26/360 (7%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
G++ EEL L G P R QI+ W++ RG+ F M+D+ +++R L
Sbjct: 103 GLLPEELGRVLSAWGEPA----YRGRQIFAWLHRRGVTRFAEMTDLPKDLRRRLEALGDP 158
Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+ P + ++ TRK+LL IETV + + +LCVSSQVGC++ C
Sbjct: 159 VVPAVRRLQVDPQDGTRKYLLELE-----DGQLIETVLMRHRYGLSLCVSSQVGCAMGCR 213
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC + LVRNLTA E+ Q+L+ L + G+++S++V+MG+GE
Sbjct: 214 FCASTLGGLVRNLTAAEMAGQLLVVNRDLAE--------------RGQRVSHVVVMGIGE 259
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL N D + L +A G S R +T+STSG VP I ++ + LA+SLHA ++
Sbjct: 260 PLQNLDATLQFLRVAHHPQGAGISYRHMTVSTSGLVPRIRQLAHAGLPITLAVSLHAPND 319
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
LR+ L+P+NR++P+ L+DACR Y + RRITFEYV+++ +ND P A L ++ G
Sbjct: 320 ALRSWLMPVNRRWPIAELMDACREYVERT-GRRITFEYVLIEDVNDRPEHAAELADLVAG 378
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ +NLIP+NP + + + F ++R G + +R G I AACGQL+
Sbjct: 379 LNGHVNLIPWNPVSERPFRAPSPERVQAFVAALRRRGVNVTVRRELGQRIEAACGQLRRR 438
>gi|330752186|emb|CBL87145.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria
bacterium]
Length = 349
Score = 335 bits (858), Expect = 8e-90, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK + G+ +E + E R Q+++W++ + F M+++S R LL
Sbjct: 4 KKRDIRGLSQEAIIEFFEAH----NEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N +F+ E+ + S DGT K ++ +E+V IP + R T CVSSQVGC
Sbjct: 60 NANFNFNLLEVDLMQRSKDGTIKNAVKLH-----DGAFVESVLIPTEKRITACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C+FC T + K +RNL +EI QV++ GR ++NIV
Sbjct: 115 SLDCTFCATASLKRMRNLGPDEIYDQVVVI-------------HNQGKEYFGRPLTNIVF 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N++NV ++ +D GL S RRITLST G I R+ ++ + LAISL
Sbjct: 162 MGMGEPLLNYNNVLAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISL 221
Query: 244 HAVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
H+ + R L+P+ K L L ++ +++ + +TFEYV+ K +ND+ +D L
Sbjct: 222 HSAIEEKRAKLMPLAHKSATLVDLRESLQYWYAKTGRG-VTFEYVIWKDLNDTEQDVKAL 280
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K IP K+N+I +NP Y + Q+ + + E ++ G + IR RG DI AAC
Sbjct: 281 AKFCGAIPTKVNIIQYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAAC 340
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 341 GQLANKVE 348
>gi|307330070|ref|ZP_07609221.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu
4113]
gi|306884331|gb|EFN15366.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu
4113]
Length = 368
Score = 335 bits (858), Expect = 8e-90, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 180/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E EA+ +G R SQ+ + + R + D SDI R L
Sbjct: 20 RHLADLTPAERREAVAALG----EKPFRASQVSRHYFARYVDDPAQWSDIPAAAREKLAA 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 76 GLLPELMSVVRHISCDDDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEIPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGVSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY ++K IND A L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRVSIEYALIKDINDQAWRADLL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F ++ G +R RG +I AC
Sbjct: 301 GRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAASER 368
>gi|313901449|ref|ZP_07834906.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus
DSM 13965]
gi|313468277|gb|EFR63734.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus
DSM 13965]
Length = 353
Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 129/383 (33%), Positives = 203/383 (53%), Gaps = 36/383 (9%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ +G++ EEL L G P R QI+ W + RG+ F M+D+ +E+R
Sbjct: 1 MSTRDWVGLLPEELARELEAWGQPA----YRGRQIFAWFHRRGVTRFSAMTDLPRELRER 56
Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + P + ++ + TRK+LL IETV + + +LCVSSQV
Sbjct: 57 LAEQGDPAVPAVRRLQVDPEDGTRKYLLEL-----ADGQLIETVLMRHRYGLSLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC + LVRNLTA E+ Q+L+ L + G ++S++
Sbjct: 112 GCAMGCRFCASTLGGLVRNLTAAEMAGQLLVVNRDLAE--------------RGERVSHL 157
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEPL N D + L +A +G S R +T+STSG VP I ++ E + LA+
Sbjct: 158 VVMGIGEPLQNLDATLQFLRVAHHPLGAGISYRHMTVSTSGLVPRIRQLAREGLPITLAV 217
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++ LR+ L+P+NR++P+ L+ ACR Y + RRITFEYV+++ +ND P A
Sbjct: 218 SLHAPNDALRSWLMPVNRRWPIAELMAACREYVEET-GRRITFEYVLIEDVNDRPEHARE 276
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +++ + A +NLIP+NP + + + F+ ++R G + +R G I AA
Sbjct: 277 LARLVGPLHAHVNLIPWNPVSERPFKAPSPERVQAFAAELRRQGVNVTVRRELGQRIEAA 336
Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
CGQL+ R+ ++ G
Sbjct: 337 CGQLR----------RRALEEAG 349
>gi|153953998|ref|YP_001394763.1| ribosomal RNA large subunit methyltransferase N [Clostridium
kluyveri DSM 555]
gi|146346879|gb|EDK33415.1| Hypothetical protein CKL_1373 [Clostridium kluyveri DSM 555]
Length = 359
Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 131/372 (35%), Positives = 202/372 (54%), Gaps = 29/372 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EELE + + R SQI WIY + DF M++IS+ V L ++
Sbjct: 3 NILNFNIEELENWMK----VNDESKFRASQIMDWIYKKNQYDFNYMTNISKNVIEKLKKN 58
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I PE+++++ S T K+L +F + IETV + + ++CVS+QVGC +
Sbjct: 59 FYIGIPELIEKQKSKSQDTFKFLYKFQDKN-----IIETVVMKYRHGNSICVSTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + +VRNLT+ EIL Q+L +++ + + +ISNIV+MG
Sbjct: 114 GCKFCASTVNGMVRNLTSGEILAQILKSQTEINE-----------------RISNIVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEPL N+DNV K L++ + L+ +R ITLST G VP I + E + LAISLH+
Sbjct: 157 SGEPLDNYDNVLKFLNMVNSKYSLNIGQRHITLSTCGIVPKIMDLANENLQITLAISLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
N R ++PI KY +E +I AC++Y + RR++FEY ++KG+NDS A L+++
Sbjct: 217 PDNFSRRDMMPIANKYSIEEIIYACKYYINKT-GRRVSFEYALVKGVNDSLEFAERLVQL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +NLIP N ++ S + +I F + + + IR G DI AACGQL
Sbjct: 276 LKGLLCHVNLIPVNEVKENDFKKSSEDNIKKFYNKLIENKIETTIRREMGSDIDAACGQL 335
Query: 366 KSLSKRIPKVPR 377
+ +
Sbjct: 336 RRRYLESKSYRK 347
>gi|255657702|ref|ZP_05403111.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544]
gi|260849890|gb|EEX69897.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544]
Length = 347
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 194/365 (53%), Gaps = 24/365 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + G+ EEL+EAL P + R QI +W+Y RG F M+++S+++R L+
Sbjct: 2 KDIFGLTVEELQEAL----QPFSLPKYRARQIAEWMYQRGATGFADMTNLSKKLREELSG 57
Query: 67 HFSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I P+ D S T K+LL F +ETV + + ++CVS+Q GC+
Sbjct: 58 AFVIGRPKCKDRLDSSDGHTTKFLLEFT-----DGTAVETVLMRQPYGNSICVSTQAGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + + RNLT EIL Q ++ +L G K+ +V+M
Sbjct: 113 MGCAFCASTLHGMARNLTTGEILSQAIVISDMLR------------AEGQGEKVDTVVIM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G GEPL N++NV + + + L S R ITLSTSG VP + ++ EE I + L++SLH
Sbjct: 161 GSGEPLMNYENVLGFIRLLHEDYVLGLSYRSITLSTSGIVPQMYKLAEEGIPISLSVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +LR+ L+PINRKYPL ++ A RHY ++ R+T+EY+++ +ND A L+
Sbjct: 221 APEQELRSTLMPINRKYPLVDVVRAARHYAEVTKR-RVTYEYILIDRVNDGEEQARELVS 279
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G A +NLIP NP L I F + + +R G DI AACGQ
Sbjct: 280 LLRGQLASVNLIPINPVAERHLLRPSAARIDWFEHYLTAHHINVTVRREMGTDIQAACGQ 339
Query: 365 LKSLS 369
L++
Sbjct: 340 LRNKH 344
>gi|149003387|ref|ZP_01828276.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae
SP14-BS69]
gi|303255819|ref|ZP_07341860.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae
BS455]
gi|303260232|ref|ZP_07346203.1| hypothetical protein CGSSp9vBS293_03308 [Streptococcus pneumoniae
SP-BS293]
gi|303261439|ref|ZP_07347387.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae
SP14-BS292]
gi|303264106|ref|ZP_07350027.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae
BS397]
gi|303266283|ref|ZP_07352174.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae
BS457]
gi|303268722|ref|ZP_07354512.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae
BS458]
gi|147758570|gb|EDK65568.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae
SP14-BS69]
gi|302597203|gb|EFL64308.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae
BS455]
gi|302637573|gb|EFL68060.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae
SP14-BS292]
gi|302638556|gb|EFL69020.1| hypothetical protein CGSSpBS293_03308 [Streptococcus pneumoniae
SP-BS293]
gi|302641782|gb|EFL72139.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae
BS458]
gi|302644213|gb|EFL74469.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae
BS457]
gi|302646511|gb|EFL76737.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae
BS397]
Length = 361
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+S SG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|315640014|ref|ZP_07895140.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
gi|315484223|gb|EFU74693.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
Length = 359
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 136/370 (36%), Positives = 212/370 (57%), Gaps = 26/370 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + EL + +L+ G + R +Q+W+W+Y + ++ F M+++S+ L+
Sbjct: 8 KASIYELPLNELTDWVLEQG----EKKFRATQLWEWLYQKRVQSFTQMTNLSKGFIEKLD 63
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I V + + DGT K+L + P IETV + ++ ++CV++QVGC+
Sbjct: 64 ETFIINPLHQVVVQEAQDGTVKYLFQLP-----DNHMIETVMMTQEYGLSVCVTTQVGCN 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+LTA EI+ Q++L + L D + G ++S+IV+M
Sbjct: 119 IGCTFCASGILKKQRDLTAGEIVAQIMLVQHYLDD------------KNEGSRVSHIVVM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+ NV L+I +D+ GL+ R IT+STSG VP I E V LAISLH
Sbjct: 167 GIGEPFDNYQNVMNFLTIVNDAKGLAIGARHITVSTSGLVPKIREFAENGLQVNLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +ND+R ++ INR +P+E L+DA +Y +N RITFEY+ML +ND A L
Sbjct: 227 APNNDVRTSIMRINRTFPIEKLMDAVDYYLEKTNR-RITFEYIMLSHVNDRVEHAQQLAD 285
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK +NLIP+NP + Y S + D++ F + +K++G + IR G DI AA
Sbjct: 286 LLKDKKKLTYVNLIPYNPVSEHDQYARSSRNDVMKFYDVLKKNGINCVIRKEYGTDIDAA 345
Query: 362 CGQLKSLSKR 371
CGQL+S +
Sbjct: 346 CGQLRSKQMK 355
>gi|257792840|ref|YP_003183446.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243]
gi|257476737|gb|ACV57057.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243]
Length = 353
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 126/373 (33%), Positives = 194/373 (52%), Gaps = 31/373 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M + K S+ EL + ++G P R Q+ +W+Y R + M+++ +
Sbjct: 6 MAAMDK-SIKTYSLPELASVMKELGQPA----FRAQQLQEWLYQRHASSYDEMTNLPGSL 60
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCV 118
R L + F + P +VD +IS DGTRK+L+ F + +ETV IP ++ R T+C
Sbjct: 61 RATLAERFPLTMPTVVDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCF 115
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
S+Q GC + C+FC TG + RNL EI+ QVL+ + + G++
Sbjct: 116 STQAGCPIACAFCATGQEGFARNLIPGEIVDQVLIVQEDM-----------------GKR 158
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
++N V MG GEP N+DN +L I + GL R I++ST G +P + R E
Sbjct: 159 VTNAVGMGQGEPFLNYDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSGEPEQF 218
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLHA +R++++P +Y L L +A ++Y +N RIT EY+M++G+ND+P
Sbjct: 219 TLAVSLHAARQPIRDLIMPNVARYKLPSLKEALQNYVAKTNR-RITLEYIMIEGVNDAPV 277
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
D L K + +NLIP N G E+ S + I + I + G + +R RG D
Sbjct: 278 DLKALQKFCSNLLCHVNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSD 337
Query: 358 ILAACGQLKSLSK 370
I ACGQLK+ K
Sbjct: 338 ISGACGQLKNTFK 350
>gi|153939514|ref|YP_001391802.1| radical SAM protein [Clostridium botulinum F str. Langeland]
gi|205829628|sp|A7GG92|RLMN_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|152935410|gb|ABS40908.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str.
Langeland]
gi|295319828|gb|ADG00206.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str.
230613]
Length = 342
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 201/362 (55%), Gaps = 29/362 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ +
Sbjct: 3 NILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDN 58
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + P++V + +S T K+L + IE+V + K ++CVS+QVGC +
Sbjct: 59 FYVGVPKVVKKLMSQDKNTYKFLFEYK-----DGNIIESVVMKYKHGNSICVSTQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+MG
Sbjct: 114 GCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL NF NV K L + + L+ +R ITLST G VP I + ++ + LAISLH+
Sbjct: 157 SGEPLDNFQNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L +
Sbjct: 217 PEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSTV 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQL
Sbjct: 276 LKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQL 335
Query: 366 KS 367
+
Sbjct: 336 RR 337
>gi|254442505|ref|ZP_05055981.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
gi|198256813|gb|EDY81121.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
Length = 368
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 129/375 (34%), Positives = 196/375 (52%), Gaps = 17/375 (4%)
Query: 1 MNFL-KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
M +L +K + G E L+ ++G P + R Q+ +W+Y + + M+++ +
Sbjct: 1 MKYLPEKPPIYGETLESLQARFAELGEP----KFRAKQVLEWLYKKRAETWDAMTNLPKP 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI---PEKSRGTL 116
+R L F I + V K S D T K LL+ + V I I E SR T+
Sbjct: 57 LREKLAAAFEIAPSKRVLAKESSDETEKLLLQMGDNSMIETVVIRAPQIGVGQENSRKTI 116
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+S+QVGC+ C FC +G R+L+ EI+ Q++ ED
Sbjct: 117 CISTQVGCAYGCKFCASGLLGWKRDLSVGEIVSQLIHV-------CHMEDATTERASEEI 169
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI- 235
NIV+MGMGEP+ N+ N+ +L I + GL+F RRIT+STSG VP I + +E
Sbjct: 170 ASFDNIVVMGMGEPMANYKNLLPALRILNADWGLNFGARRITISTSGVVPRILELADERE 229
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
LA+SLH +N++R+ ++P+NRKYPLE L+ A + Y + R IT E+++++ IND+
Sbjct: 230 QFRLAVSLHGATNEVRDQIMPVNRKYPLEKLLPAIQKYAQ-TKGRMITLEFILIEEINDT 288
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A L KI + A +NLIP+N G ++ F +K G S+ IR +G
Sbjct: 289 LEQADALTKIALDLKAHVNLIPYNTVDGLDWKRPSITRQDVFYNRLKNRGVSATIRREKG 348
Query: 356 LDILAACGQLKSLSK 370
DI AACGQLK ++
Sbjct: 349 HDIAAACGQLKLKTE 363
>gi|167772290|ref|ZP_02444343.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM
17241]
gi|167665393|gb|EDS09523.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM
17241]
Length = 359
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 126/383 (32%), Positives = 196/383 (51%), Gaps = 29/383 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+++ L +++E+ ++G+P R R QI+ W++ + + DF M+++ +R
Sbjct: 1 MEQIDLKSYTYQQMEKLTAEMGLP----RFRAGQIFGWLHEKRVSDFDEMTNLPAALRSQ 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + F I + +S DGT K+L +E+V + TLC+SSQV
Sbjct: 57 LAEKFYINAIRVKKRLVSSIDGTVKYLYELR-----DGNCVESVLMHYHHGNTLCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + VR+LTA E+L +V +A+ G ++ +
Sbjct: 112 GCRMGCRFCASTIGGRVRDLTASEMLDEVYMAQ-----------------ADSGERVDGV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
VMMG+GEPL NFDNV L I SD GL+ R ++LST G V I + E + L++
Sbjct: 155 VMMGIGEPLDNFDNVMAFLEILSDPRGLNLGLRHVSLSTCGLVDRIYALAERRLQLTLSV 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++ +R+ +P+N +Y ++ L+ ACR Y + RRI+FEY ++ G ND+P A
Sbjct: 215 SLHAPNDAIRSRSMPVNARYNVDTLLRACRDYFAAT-GRRISFEYALIAGENDAPEHAAE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L L+G+ A +NLIP NP Y D+ I F ++ G ++ IR G DI AA
Sbjct: 274 LAARLRGMGAHVNLIPVNPVAETGYRRGDRAAIERFQNELRLRGVNATIRRELGADISAA 333
Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
CGQL+ R + G
Sbjct: 334 CGQLRRQDADASTSGRVPVTEGG 356
>gi|148989849|ref|ZP_01821143.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae
SP6-BS73]
gi|147924791|gb|EDK75875.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae
SP6-BS73]
Length = 361
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R I +STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHIMISTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|153809821|ref|ZP_01962489.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174]
gi|149833999|gb|EDM89079.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174]
Length = 346
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 124/373 (33%), Positives = 198/373 (53%), Gaps = 30/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M +EL+E + +IG R QI+ W++ + + M+++ + ++ L
Sbjct: 2 TDIKSMTIDELKELMTQIG----EKPFRAKQIYSWLHEHLVTSYDEMANLPKNLKQKLAD 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I E +D +IS DGTRK+L R IE+V + K ++C+SSQ GC
Sbjct: 58 -YPITALETLDVQISKVDGTRKYLFRLS-----DGNMIESVLMRYKYGNSVCISSQAGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + L RNL E+L Q+ + S+G +ISN+V+M
Sbjct: 112 MGCRFCASTIGGLTRNLLPSEMLDQIYRIQ-----------------TSIGERISNVVVM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+DN+ + + I ++ G+ S+R +T+ST G VP I + EE + LA+SLH
Sbjct: 155 GTGEPLDNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPKIYELAEEKLQMTLAVSLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++ R L+PI KY ++ L+ ACR+Y + RRITFEY ++ G+NDS +A L
Sbjct: 215 APNDEKRRELMPIANKYSIDELLAACRNYFDKT-GRRITFEYSLVAGVNDSKENAQELAG 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
LKG+ +NLIP NP ++ S ++ + F +++ G + IR G DI ACGQ
Sbjct: 274 RLKGLNCHVNLIPVNPVRERSFVRSTREAVENFKINLEKCGINGTIRREMGSDIDGACGQ 333
Query: 365 LKSLSKRIPKVPR 377
L+ + +
Sbjct: 334 LRKRYMEKTESEK 346
>gi|317489233|ref|ZP_07947750.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA]
gi|325832221|ref|ZP_08165220.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1]
gi|316911634|gb|EFV33226.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA]
gi|325486057|gb|EGC88511.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1]
Length = 353
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 128/373 (34%), Positives = 197/373 (52%), Gaps = 31/373 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M + K S+ EL + ++G P RT Q+ +W+Y R + M+++ +
Sbjct: 6 MAAMDK-SIKTYSLPELASVMKELGQPA----FRTQQLQEWLYQRHASSYDEMTNLPGSL 60
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCV 118
R L + F + P +VD +IS DGTRK+L+ F + +ETV IP ++ R T+C
Sbjct: 61 RATLAERFPLTMPTVVDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCF 115
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
S+Q GC + C+FC TG + RNLT EI+ QVL+ + + G++
Sbjct: 116 STQAGCPIACAFCATGQEGFARNLTPGEIVDQVLIVQEDM-----------------GKR 158
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
++N V MG GEP N+DN +L I + GL R I++ST G +P + R EE
Sbjct: 159 VTNAVGMGQGEPFLNYDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSEEPEQF 218
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLHA +R++++P +Y L L +A ++Y +N R+T EY+M++G+ND+P
Sbjct: 219 TLAVSLHAARQPIRDLIMPNVARYELPSLKEALQNYVAKTNR-RVTLEYIMIEGVNDAPA 277
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
D L K + +NLIP N G E+ S + I + I + G + +R RG D
Sbjct: 278 DLKALQKFCSNLLCHVNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSD 337
Query: 358 ILAACGQLKSLSK 370
I ACGQLK+ K
Sbjct: 338 ISGACGQLKNTFK 350
>gi|229816215|ref|ZP_04446525.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM
13280]
gi|229808223|gb|EEP44015.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM
13280]
Length = 348
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 117/375 (31%), Positives = 193/375 (51%), Gaps = 32/375 (8%)
Query: 4 LKKES----LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
+++ + + ++L+E + ++G P R Q+++W++ + + F M+++
Sbjct: 1 MERTNRSRDIRQFDLDDLKELMKELGQPA----FRAKQLYEWVHEKNVCSFDEMTNLPAG 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
+R L + F+ P + +++S DG+RK+LL F V +ETV +P +++ +C+S
Sbjct: 57 LRQSLTETFAFKVPTELVKQVSKDGSRKYLLEFS-----DGVSVETVGMPNRNKLAVCIS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQ GC++ C+FC TG L R+LTA+E++ QVL G+ ++
Sbjct: 112 SQAGCAMGCAFCATGLAGLSRSLTAQEMVDQVLHVSRDFGE-----------------RV 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
+++V MG GEP NFDN ++L + +D GL+ R +T+ST G +P I R E
Sbjct: 155 TSVVFMGQGEPFANFDNTVEALRMLNDPEGLAIGARHLTVSTCGVIPGIRRFAELPEQFT 214
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLH+ RN L+P +K+ L L +A + Y + RR T+E+ M+ GIND+ +
Sbjct: 215 LAISLHSAIQTTRNQLMPGVKKFTLLRLHEAIQEYVEKT-GRRPTYEFAMIDGINDTSPE 273
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L+ G +NLI N P + S + + G + IR RG DI
Sbjct: 274 MQALVDFCAGTLCHVNLIQLNDIPDSPFRPSPIDKVEALQRRLTMHGVETTIRNSRGGDI 333
Query: 359 LAACGQLKSLSKRIP 373
AACGQLK R
Sbjct: 334 DAACGQLKQRRFRAR 348
>gi|291458606|ref|ZP_06597996.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078
str. F0262]
gi|291419139|gb|EFE92858.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078
str. F0262]
Length = 362
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 130/384 (33%), Positives = 202/384 (52%), Gaps = 43/384 (11%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + EL E + ++ R QI+ W++ R F MS++S +R L +HF
Sbjct: 4 IRELSLPELREKMREL----SEKPFRAEQIYSWLHERLCASFDEMSNLSLPLREKLREHF 59
Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ PE V S DGTRK++ R IE+V++ + T+C+SSQVGC +
Sbjct: 60 RLFLPEPVRILSSSLDGTRKFIFRLE-----DGHIIESVFMRYRHGNTVCISSQVGCRMG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC + + L RNL+A E+L QV + LLG+ +ISN+V+MG
Sbjct: 115 CRFCASTLEGLARNLSAAEMLTQVYQIQRLLGE-----------------RISNVVVMGS 157
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
GEPL N++N+ K + + SD GL S+R +T+ST G VP + R+ EE + LA+SLHA
Sbjct: 158 GEPLDNYENLTKFVRMISDERGLHLSQRNLTVSTCGLVPELFRLSEEGFQLTLALSLHAP 217
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R L+PI +YPL L+ A RHY + RR++FEY +++ +ND+ +A L +L
Sbjct: 218 NDEIRRRLMPIAARYPLSELLPAVRHYFERT-GRRVSFEYSVVRDLNDTREEAEALSSLL 276
Query: 307 KG--------------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
K P +NLIP NP + +++ I F ++++G S+ IR
Sbjct: 277 KKLRDEGEGSAGQQKGFPLHVNLIPVNPIRERSWERPERRRIEDFQHILEKNGISATIRR 336
Query: 353 PRGLDILAACGQLKSLSKRIPKVP 376
G DI ACGQL+ +
Sbjct: 337 EMGADISGACGQLRRDYLGEKRSE 360
>gi|313676931|ref|YP_004054927.1| 23S rRNA m(2)a-2503 methyltransferase [Marivirga tractuosa DSM
4126]
gi|312943629|gb|ADR22819.1| 23S rRNA m(2)A-2503 methyltransferase [Marivirga tractuosa DSM
4126]
Length = 360
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 127/367 (34%), Positives = 197/367 (53%), Gaps = 24/367 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
L K+ + M + + E L G R QI++W++++ F+ M+++S+ +R
Sbjct: 17 LSKKDIRKMSIDAIAEDLTASG----EKAFRAKQIYEWLWMKSAASFEEMTNLSKNLREW 72
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+Q++ I I D+++S D T K R E+E V IP ++R T CVSSQVG
Sbjct: 73 LDQNYCINRITIADKQLSSDRTIKVAFRLH-----DGNEVEGVLIPTENRMTACVSSQVG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL+C FC TG K +RNL A EI QV++ + L +SNIV
Sbjct: 128 CSLSCKFCATGYLKRMRNLEAAEIYDQVVMIKEL-------------AETHYDMPLSNIV 174
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N+ N+ +S+ + GL S +RIT+ST+G I ++ ++ LA+S
Sbjct: 175 YMGMGEPLLNYKNMMESIEHITSEKGLHMSPKRITVSTAGISKMIKKLADDDAKFNLALS 234
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++ R+ ++ IN L +L +A +Y + R+TFEY + NDS DA L
Sbjct: 235 LHAANDEKRSQIMSINDSNNLPVLREALEYYHSKT-KNRVTFEYCVFNNFNDSLEDAKEL 293
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ K +PAK+NLI +NP ++ +D+ + F+ ++ G +R RG DI AAC
Sbjct: 294 WQFTKYVPAKVNLIEYNPIDQADFTNTDEDKLDKFAAFLEDRGVIVNVRRSRGKDIDAAC 353
Query: 363 GQLKSLS 369
GQL +
Sbjct: 354 GQLANKH 360
>gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
Length = 332
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 143/353 (40%), Positives = 198/353 (56%), Gaps = 21/353 (5%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
++ L + G P R Q+W+WI+ + DFQ M++IS+ +R L Q F + P +V
Sbjct: 1 MQNLLKERGEPA----YRADQLWQWIWQKKAGDFQEMTNISKALRSSLQQEFVLQRPAVV 56
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+K S DGT K LL IETV IPEK T C+S+QVGC + C FC TG
Sbjct: 57 QKKESIDGTVKLLLGLN-----DGFFIETVIIPEKDYYTQCISTQVGCPMGCVFCSTGCM 111
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLT EI QVL+A L D +++N+V+MGMGEPL N+D
Sbjct: 112 GFKRNLTPGEIASQVLVACRHLEDTGLDST-----------RLTNVVLMGMGEPLLNWDA 160
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256
VKK++ + +DS+GL S+RR+TLST G + G MLA+SLHA DLR L+P
Sbjct: 161 VKKAMYMMTDSLGLGISRRRLTLSTVGVRDRLQEFGSSRLGMLAVSLHAPDQDLRRRLMP 220
Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
+ ++ L+ A YP L+ RIT EYV+LK INDSP A L+++L + K+NL+
Sbjct: 221 GAATWDIKDLVRALEQYP-LAPRERITIEYVLLKDINDSPAQARALVRLLSRVKCKVNLL 279
Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+NP Y +K I+TF E ++ G + +R +G DI AACGQL + S
Sbjct: 280 AYNPGEQEGYQPPQEKTILTFEEVLRSKGLTVTLRKSKGQDISAACGQLIADS 332
>gi|88803607|ref|ZP_01119132.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P]
gi|88780619|gb|EAR11799.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P]
Length = 345
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 197/368 (53%), Gaps = 24/368 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
KK+ + + +EEL ++ R +Q+++W++ + + F M++IS+E R
Sbjct: 1 MSKKKDIRALTKEELRFFFVEN----NDQAFRGNQVYEWLWSKSLHTFDAMTNISKETRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L +F I + ++ + S DGT K ++ + +E+V IP + R T CVSSQV
Sbjct: 57 MLAANFVINHIKVDSMQKSKDGTIKNGIKLH-----DGLIVESVLIPTEKRTTACVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCSL C FC T K +RNL +EI QV++ + G K+SNI
Sbjct: 112 GCSLDCKFCATSRLKRMRNLNPDEIYDQVVVI-------------DKQSQLYFGHKLSNI 158
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEPL N+ N+ KS+ + + GL S +RIT+STSG I ++ +E LA+
Sbjct: 159 VFMGMGEPLMNYKNMMKSIQMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAV 218
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ +++R ++P N +PL+ L ++ ++ + R IT+EY++ GIND D
Sbjct: 219 SLHSAIDEVRTSIMPFNATFPLKDLKESLEYWYEKT-GRAITYEYIVWDGINDRKEDIKA 277
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+ K IP K+NLI +NP E+ + I + ++ + +R RG DI AA
Sbjct: 278 LVAFCKAIPCKVNLIEYNPIDDGEFQQASSAAINNYISNLEMHDITVNVRRSRGKDIDAA 337
Query: 362 CGQLKSLS 369
CGQL + S
Sbjct: 338 CGQLANKS 345
>gi|225858576|ref|YP_002740086.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae 70585]
gi|254807216|sp|C1C6B0|RLMN_STRP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|225721405|gb|ACO17259.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 70585]
Length = 361
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMCQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N +TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia
profundicola AmH]
gi|259491991|sp|B9L721|RLMN_NAUPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH]
Length = 354
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 134/373 (35%), Positives = 206/373 (55%), Gaps = 29/373 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+ + + EEL E + RT Q+++W+Y + + DF+ M +I ++++
Sbjct: 1 MDKKIFMDYLPEELMEF-------GIQPKFRTKQLYQWVYRKYVDDFEEMKNIPKDLKAK 53
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR------GTLC 117
L + F I E+++ +I+ DGT K+L + V I+ K T+C
Sbjct: 54 LKKEFIINPLELINHEIATDGTEKFLFKMHDNHTVETVLIKMKDEEIKDGKIKEAKYTVC 113
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VS+QVGC + C+FC T VRNL+A EI+ QV +
Sbjct: 114 VSTQVGCKVGCAFCLTAKGGFVRNLSAGEIVAQVWWMKKF--------------KNFDEN 159
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
K N+V MGMGEPL N+D + K++ I ++ G++ S RR T+STSG P I R+G E G
Sbjct: 160 KALNVVYMGMGEPLDNYDALVKAIKILANPDGMNISPRRQTVSTSGIAPKIKRLGNENLG 219
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V LAISLHAV ++LR L+P+N+ Y +E +IDA R +P + +++ FEY+++K +ND
Sbjct: 220 VNLAISLHAVDDELREQLIPLNKAYNIESVIDAIREFP-IDKRKKVMFEYLVIKDVNDDI 278
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+L GIP+K+NLI FNP+PG + D + F + + G IR +G+
Sbjct: 279 ESAKKLVKLLNGIPSKVNLIYFNPYPGTNFKRPDDATMKKFQDYLINKGIMCTIRKSKGM 338
Query: 357 DILAACGQLKSLS 369
DI AACGQL+
Sbjct: 339 DISAACGQLREKE 351
>gi|168484426|ref|ZP_02709378.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
CDC1873-00]
gi|172042321|gb|EDT50367.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
CDC1873-00]
gi|332077182|gb|EGI87644.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17545]
gi|332203922|gb|EGJ17989.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47368]
Length = 361
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N +TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|282861394|ref|ZP_06270459.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE]
gi|282564052|gb|EFB69589.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE]
Length = 368
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 179/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E +EA+ IG R Q+ + + R D ++I R L +
Sbjct: 20 RHLADLTPDERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTNIPAGSRDRLAE 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L + +E+V + R T+C+SSQ GC
Sbjct: 76 AMFPDLMSVVRHISCDDDTTRKTLWKLH-----DGTLVESVLMRYPYRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRISIEYALIRDINDQAWRGDLL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAAAER 368
>gi|149007648|ref|ZP_01831265.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae
SP18-BS74]
gi|147760803|gb|EDK67774.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae
SP18-BS74]
Length = 361
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N +TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|42522317|ref|NP_967697.1| hypothetical protein Bd0733 [Bdellovibrio bacteriovorus HD100]
gi|81618236|sp|Q6MPV7|RLMN_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|39574848|emb|CAE78690.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 399
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 133/378 (35%), Positives = 211/378 (55%), Gaps = 26/378 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E+L+ + G Q R QI+KW+Y + + D + M+++S+E R L
Sbjct: 28 VNFYSLTLEDLKAYIKSKGKEQ----FRAQQIFKWVYEQRVTDPEQMTNLSKEFRQDLPS 83
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
S P ++ S DGT+K+L + +E V IP + R TLC+SS+VGC++
Sbjct: 84 MLSFDLPPVLQHLKSVDGTQKFLFDMK-----DGMSVEAVVIPSEDRLTLCISSEVGCNM 138
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC+TG QKL R L E+I+ Q + L + G++I+NIV MG
Sbjct: 139 ACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLAE---------------GQRITNIVFMG 183
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N + V K++ + G++ S+++IT+STSG VP + RV + V LA+SL+
Sbjct: 184 MGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWRVA-DAKVRLAVSLNGP 242
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++++R+ ++PIN+++ + L++AC+ + +S +ITFEYV+LKGI D A L+K++
Sbjct: 243 NDEIRSQVMPINKRWDTKALLEACKEHYRVS-KDKITFEYVLLKGITDQLEHARQLVKLV 301
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K +P KIN+IPFN PG Y D I F + G +R G DI AACGQL
Sbjct: 302 KDVPCKINIIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQLT 361
Query: 367 SLSKRIPKVPRQEMQITG 384
++ +R + ++ G
Sbjct: 362 TVKERPQTMDISNSRLAG 379
>gi|66806177|ref|XP_636811.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
gi|60465214|gb|EAL63309.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
Length = 407
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 168/381 (44%), Positives = 240/381 (62%), Gaps = 21/381 (5%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ +KK +LIG+ ++ELE+ +LK+G P + + QIW ++Y +GI D +S+E R
Sbjct: 44 DIIKKINLIGIQKDELEDKVLKLGYP----KYLSEQIWAFMYNKGIVDINSFERVSKEKR 99
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ + + EI ++S DGTRK L+ F E+E+V+IPE RGTLCVSSQ
Sbjct: 100 EEIKSKYEVNIGEITKHQLSVDGTRKLLISF------DGAEVESVFIPEGKRGTLCVSSQ 153
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC+ C+FC+TGTQK +RNLTA EI+ QV+ R +L DF S+ R ++N
Sbjct: 154 VGCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDS---------SIKRTLTN 204
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240
IV MG GEP N+ NV K++ I +D GL+ K +IT+STSG VP I R+G + + LA
Sbjct: 205 IVFMGQGEPFYNYRNVSKAIKIITDPNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLA 264
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH+ ++ R+ +VP NR++P+ L++AC + RIT EYVMLKG+NDS +DA
Sbjct: 265 ISLHSANDKTRSEIVPANRQWPISELVEACIKFSKNC-KERITIEYVMLKGVNDSEQDAY 323
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+L+K+ K P+ +NLIPFNPWPG +Y S ++ I FS+ + G IR PRG DILA
Sbjct: 324 DLVKLSKSFPSFVNLIPFNPWPGSQYKSSSKETISQFSKILDDKGIKVTIRQPRGRDILA 383
Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
ACGQL + S + P Q ++
Sbjct: 384 ACGQLNTESIKEINKPIQPLE 404
>gi|148997156|ref|ZP_01824810.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae
SP11-BS70]
gi|168575427|ref|ZP_02721363.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016]
gi|194397178|ref|YP_002037414.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae G54]
gi|307067370|ref|YP_003876336.1| putative Fe-S-cluster redox enzyme [Streptococcus pneumoniae AP200]
gi|254807215|sp|B5E369|RLMN_STRP4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|147756856|gb|EDK63896.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae
SP11-BS70]
gi|183578600|gb|EDT99128.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016]
gi|194356845|gb|ACF55293.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
G54]
gi|306408907|gb|ADM84334.1| Predicted Fe-S-cluster redox enzyme [Streptococcus pneumoniae
AP200]
gi|332202631|gb|EGJ16700.1| radical SAM superfamily protein [Streptococcus pneumoniae GA41317]
Length = 361
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 123/375 (32%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMCQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCSSGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|268611643|ref|ZP_06145370.1| radical SAM protein [Ruminococcus flavefaciens FD-1]
Length = 352
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 125/374 (33%), Positives = 202/374 (54%), Gaps = 30/374 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K ++ + ELE L ++G + R QI++W++V+ + DF M+DIS ++R +
Sbjct: 1 MEKIDILSLSLTELENVLTELG----EKKFRAKQIFQWLHVKRVTDFDKMTDISVQLRTV 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + F I + + SC D T K+L R +ETV + ++CVS+QV
Sbjct: 57 LKEKFCINGLFVEKKLESCMDNTVKYLYRLS-----DGNFVETVLMEYNYGHSICVSTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + VR+L EIL+Q+ G ++S +
Sbjct: 112 GCKMGCRFCASAIAGYVRDLEPSEILMQIYETER-----------------DSGVRVSGV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V+MG+GEPL N+DNV + LS+ SD G + S R ++LST G VP I + + +GV L +
Sbjct: 155 VLMGIGEPLDNYDNVVRFLSLLSDKNGNNMSLRHVSLSTCGIVPRIYDLAKLRLGVTLCV 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH N+ R+ ++P+N KY ++ LI AC+ Y + RRITFEY ++ G+N + DA
Sbjct: 215 SLHCPDNEGRSKIMPVNNKYDIDSLITACKDYIDAT-GRRITFEYAVIDGVNSTDADADK 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L+GI +NLIP N Y + + + F++ + + G ++ +R G DI AA
Sbjct: 274 LADLLRGINCHVNLIPVNKVKERNY-RTARSGVADFAKRLGKRGINATVRRTLGSDIEAA 332
Query: 362 CGQLKSLSKRIPKV 375
CGQL+ + + +
Sbjct: 333 CGQLRRDAAKSSEK 346
>gi|295109190|emb|CBL23143.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus obeum A2-162]
Length = 346
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 125/373 (33%), Positives = 199/373 (53%), Gaps = 30/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M EEL+E +++IG R QI+ W++ + + M++I + ++ L
Sbjct: 2 TDIKSMNMEELKELMVQIG----EKPFRAKQIYGWLHEHLVTSYDEMANIPKSLKEKLKD 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I E +D + S DGTRK+L R IE+V + K ++C+SSQ GC
Sbjct: 58 -YPITVLEELDVQTSKVDGTRKYLFRLS-----DGNMIESVLMRYKYGNSVCISSQAGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + L RNL E+L Q+ + S+G +ISN+V+M
Sbjct: 112 MGCRFCASTIGGLTRNLLPSEMLDQIYRIQ-----------------TSIGERISNVVVM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+DN+ + + I ++ G+ S+R +T+ST G VP I + +E + LA+SLH
Sbjct: 155 GTGEPLDNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPRIYELADEKLQMTLAVSLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++ R L+PI KY ++ L+DACR+Y + RRITFEY ++ G+NDS +A L
Sbjct: 215 APNDEKRRELMPIANKYSVDELLDACRYYFDKT-GRRITFEYSLVAGVNDSKENAQELAG 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
LKG+ +NLIP NP ++ S ++ + F +++ G + IR G DI ACGQ
Sbjct: 274 RLKGLNCHVNLIPVNPVRERSFVRSTRQAVENFKINLEKCGINGTIRREMGSDIDGACGQ 333
Query: 365 LKSLSKRIPKVPR 377
L+ + +
Sbjct: 334 LRKRYMEKTESEK 346
>gi|154497983|ref|ZP_02036361.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC
29799]
gi|150272973|gb|EDN00130.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC
29799]
Length = 340
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 119/367 (32%), Positives = 191/367 (52%), Gaps = 32/367 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M + E+ + ++G P R Q+++W++ RG F M+++S+ +R L+
Sbjct: 2 TDIKSMNQAEMADYFRELGEPA----FRAKQVFQWLH-RGAVSFDDMTNLSKGLREKLSG 56
Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I P + +++S T K+L + IETV + T+C+SSQVGC
Sbjct: 57 SCYITAPAVERKQVSAQDGTIKYLWKLR-----DGNCIETVLMRYHHGNTVCISSQVGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + VRNLT E+L QVL + G ISNIV+M
Sbjct: 112 MGCAFCASTLGGKVRNLTPSEMLDQVLFTQ-----------------LDSGVPISNIVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
G+GEPL NFD V + L + + GL+ R I+LST G V I ++ + + + L++SLH
Sbjct: 155 GIGEPLDNFDTVMRFLELVNHPDGLNIGMRHISLSTCGLVEKIDKLADLRLQLTLSVSLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ R+ ++P+N+ +E L +CR Y + RRI++EY M+ G+NDS A L K
Sbjct: 215 APDDETRSRIMPVNKAVGVERLFRSCRQYFEKT-GRRISYEYAMIDGVNDSDWQADLLAK 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
LKG P +NLIP N S + + F + +++ G + +R G DI A+CGQ
Sbjct: 274 HLKGTPGHVNLIPLNEVKESPLKPS--RRVEAFQKRLEQHGITVTVRRKLGGDIDASCGQ 331
Query: 365 LKSLSKR 371
L+ + +
Sbjct: 332 LRRKAMQ 338
>gi|308274581|emb|CBX31180.1| Ribosomal RNA large subunit methyltransferase N [uncultured
Desulfobacterium sp.]
Length = 347
Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats.
Identities = 155/370 (41%), Positives = 221/370 (59%), Gaps = 25/370 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K+++I + ++E L ++GI RT QI+KWIY + + F+ M+DI E+
Sbjct: 1 MNSESKKNIIELTKDEFSFWLKEMGIEA----YRTHQIFKWIYSKQVDTFEEMTDIGLEL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LL H++I +IS DG++K+L IE+V IPEK+ TLC+SS
Sbjct: 57 RKLLLNHYTINRLNKQKVEISSDGSKKYLFGLT-----DGNYIESVLIPEKNHYTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+ C FC T RNLT EI+ QV ++ + ++S
Sbjct: 112 QVGCAQGCRFCLTAKGGFARNLTKAEIVSQVRDIQNDVA--------------GEKLRLS 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSM-GLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
NIV MGMGEPL N+ NV K++ S GL FSKR+IT+ST+G VP + +G++ GV L
Sbjct: 158 NIVFMGMGEPLANYKNVIKAIDTISAKDTGLGFSKRKITISTAGLVPFLKDLGKDAGVNL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISL+A N R++L+PINRKYP++ LI+ACR Y L RITFEY+++KG+NDSP DA
Sbjct: 218 AISLNAADNSTRDMLMPINRKYPVKELIEACRTY-DLKPRNRITFEYILIKGVNDSPADA 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L K+L+ + +KINLIPFN + E+ ++ I F + Y++ IR +G DI
Sbjct: 277 NRLAKLLRPVKSKINLIPFNEYETSEFKRPEESVIHHFLNILLNENYTAVIRNSKGQDIS 336
Query: 360 AACGQLKSLS 369
AACGQL++ +
Sbjct: 337 AACGQLRARN 346
>gi|149176961|ref|ZP_01855570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797]
gi|148844216|gb|EDL58570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797]
Length = 368
Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 26/366 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + R++L + ++ R QI +WI+ + + DF M DIS++ R LL ++F
Sbjct: 22 ITDLTRDQLAQWCIEH----ESSSYRADQIRRWIFTKRVNDFDAMHDISKKFRDLLKENF 77
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ IV + S D T K LL +E V + E R T+C+S+QVGC++ C
Sbjct: 78 RLFSTRIVKHQTSKDRTEKLLLALH-----DGHHVECVLMREPKRNTVCISTQVGCAMGC 132
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC +G L RNLT EIL Q+L ++G+ +ISNIV+MG+G
Sbjct: 133 VFCASGLLGLTRNLTMGEILEQILRLDRIIGE---------------EERISNIVVMGIG 177
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
EPL N + +L + G+ R+IT+ST G I + + +LA+SLHA +
Sbjct: 178 EPLANLSALIPALDTLNHKGGMGIGARKITVSTVGLPVKIRELADVNKSYILAVSLHAPN 237
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ LR+ +VP N K ++ ++DA +Y ++ RR+TFEY++L G+NDSP A L +LK
Sbjct: 238 DTLRDQIVPTNNKIGIQKILDATDYYY-VTTGRRVTFEYILLAGVNDSPAHAHELACLLK 296
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
A +NLIP N Y +D+ F + + G + +R +G DI AACGQL+
Sbjct: 297 HRNAHVNLIPANGVEETGYKTPTTEDVDRFFMTLAKGGVNVTVRKRKGDDIDAACGQLRL 356
Query: 368 LSKRIP 373
++
Sbjct: 357 NREKEK 362
>gi|317151954|ref|YP_004120002.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2]
gi|316942205|gb|ADU61256.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2]
Length = 344
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 134/361 (37%), Positives = 195/361 (54%), Gaps = 22/361 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+LI + + +LE + + R R QIW+W++ + +R +GM+++S+ +R L
Sbjct: 3 NLIELTKSDLEAFVAD---ELKEPRFRAEQIWQWLWQKRVRGVEGMTNLSKPLREKLAAM 59
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I +PE+ + S DGT K+LLR G +ETV IP + R + C+S+QVGC++
Sbjct: 60 AVITWPEVARVQQSEDGTIKFLLRL-----GDGKLVETVLIPMQDRYSQCLSTQVGCAMG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC TG RN+T EIL QVL+ R L D + N+V MGM
Sbjct: 115 CTFCSTGQLGFERNMTYGEILGQVLVGRQYLEDRGM-------------NPLKNLVFMGM 161
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N D + K L+ GLS S RR +ST GF + +GE + AISLHA +
Sbjct: 162 GEPLLNLDTLLKVLNDLPCERGLSLSWRRSMVSTVGFPEQLRILGEMEVALPAISLHAPT 221
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+LR ++P + L+ L+ A R YP + RITFEY++LKG+NDS A L +++
Sbjct: 222 QELRARIMPKAARVHLDDLMAALRAYP-MRPRERITFEYLLLKGVNDSLEHADQLARLID 280
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
KINLI +N G Y D+ + F + + G ++ IR G DI AACGQLK+
Sbjct: 281 RKKGKINLIAYNATEGLPYEAPDRAQVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLKA 340
Query: 368 L 368
Sbjct: 341 A 341
>gi|221632343|ref|YP_002521564.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
gi|221156232|gb|ACM05359.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
Length = 379
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 135/369 (36%), Positives = 209/369 (56%), Gaps = 25/369 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+++E+L ELE + G+P R R Q++ W Y + + +++ MS + + VR
Sbjct: 24 VQRETLHDYTLGELEAWVEGRGLP----RYRARQLFHWAYQQLVLEYESMSVLPKAVRSE 79
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L++ I V +++S D ++ R +ETV + R T+CVS Q+G
Sbjct: 80 LSETLPISGLVPVRQRVSDDRE---TIKLLFRTRDD-HFVETVVMFYPDRTTVCVSCQIG 135
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC TG L+RNL+A E++ QV+ + R+ISNIV
Sbjct: 136 CAIGCSFCATGLSGLIRNLSAGEMVSQVVH--------------AARLARERERRISNIV 181
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
+MGMGEP N+D V + ++I +D GL R ITLST+G VP I R+ EE V LA+S
Sbjct: 182 VMGMGEPFHNYDAVMRFVAIVNDRQGLGIGARHITLSTAGVVPFIDRLAEEPYQVKLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ LR+ LVPINR++P++ L+ ACR Y + RR+TFEYV+++ +ND R A L
Sbjct: 242 LHAPNDALRSQLVPINRRWPIDELLAACRRYVART-GRRVTFEYVLIEDVNDDERTAAEL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ L+G+ +NLIP+NP P + + I F ++R G + +R RG++I AA
Sbjct: 301 ARRLRGLLCHVNLIPYNPTPAAPLFRRPGPERIERFRAVLERYGIPATVRYSRGVEIAAA 360
Query: 362 CGQLKSLSK 370
CGQL++ +
Sbjct: 361 CGQLRAQEE 369
>gi|312793230|ref|YP_004026153.1| radical sam enzyme, cfr family [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180370|gb|ADQ40540.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 344
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 187/365 (51%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + +E + L +G R +Q+++W+Y + D +++ E+R +
Sbjct: 2 KRLIKDLTIDEFKIWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I +I+ + S + K+L + +E+V++P + +CVS+QVGC
Sbjct: 58 DEFLINSLQILKYQ-SDGESIKFLFELCDKNG-----VESVFLPYRYGNAICVSTQVGCK 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + VRNL+ E++ Q++ A + G++I+N+V+M
Sbjct: 112 MNCRFCASTIGGFVRNLSPGEMVDQIINAENF-----------------TGKRITNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISLH
Sbjct: 155 GSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L K
Sbjct: 215 APNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELGK 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG +NLIP NP + ++ I F E ++ IR G I AACGQ
Sbjct: 274 MLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACGQ 333
Query: 365 LKSLS 369
L+
Sbjct: 334 LRRRY 338
>gi|332976466|gb|EGK13312.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
Length = 350
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 125/364 (34%), Positives = 198/364 (54%), Gaps = 25/364 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + + +G P R Q+ W+YV+ + F M+++S+ +R L +
Sbjct: 3 PNAYDWTHADWKRWMKGVGEPA----FRADQVMNWLYVKRVPSFADMTNLSRGLRERLER 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + E + + S DGT K+L + IETV + ++CV++QVGC +
Sbjct: 59 DFQLKPLETITVRQSADGTIKFLFQL-----FDGHAIETVIMRHNYGNSVCVTTQVGCRV 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L R+L A E++ QVL A+ L + G ++ ++V+MG
Sbjct: 114 GCTFCASTLGGLKRDLKAGEVVAQVLEAQRYLDRW--------------GERVHSVVIMG 159
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
+GEP N+D + + + D GL+ ++RRIT+STSG VP+I R EE V LAISLHA
Sbjct: 160 IGEPFENYDASVQFMRVIQDEKGLNLAQRRITVSTSGIVPSIYRFAEEGLQVGLAISLHA 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P++ +YPLE L+ ACR+Y + RRIT+EY ++ G ND+P A L ++
Sbjct: 220 PNQALRKRLMPVSYRYPLEELLAACRYYVQKT-GRRITYEYALIGGKNDAPEHAHELGRL 278
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + INLIP N P Y + + I F + ++ ++ IR G DI AACGQL
Sbjct: 279 LEGSGSLINLIPVNHVPERNYTRTPRNRIFKFRDILQSYNLNTTIRREHGSDIEAACGQL 338
Query: 366 KSLS 369
++
Sbjct: 339 RAQH 342
>gi|297191769|ref|ZP_06909167.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721713|gb|EDY65621.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
pristinaespiralis ATCC 25486]
Length = 368
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 177/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E ++A+ IG R Q+ + + R D +DI R L
Sbjct: 20 RHLADLTPAERKDAVASIG----EKPFRAKQLSQHYFARYAHDPAQWTDIPAAAREKLAT 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 76 ELLPDLMSVVRHISCDDDTTRKTLWRLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRISIEYALIRDINDQAWRGDLL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAAQER 368
>gi|330752065|emb|CBL80576.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria
bacterium]
Length = 349
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 25/368 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK + G+ +E + E R Q+++W++ + F M+++S R LL
Sbjct: 4 KKRDIRGLSQEAIIEFFEAH----NEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N +F+ E+ + S DGT K ++ +E+V IP + R T CVSSQVGC
Sbjct: 60 NANFNFNLLEVDLMQRSKDGTIKNAVKLH-----DGAFVESVLIPTEKRITACVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C+FC T + K +RNL +EI QV++ GR ++NIV
Sbjct: 115 SLDCTFCATASLKRMRNLGLDEIYDQVVVI-------------HNQGKEYFGRPLTNIVF 161
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N++NV ++ +D GL S RRITLST G I R+ ++ + LAISL
Sbjct: 162 MGMGEPLLNYNNVLAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISL 221
Query: 244 HAVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
H+ + R L+P+ K L L ++ +++ + +TFEYV+ K +ND+ +D L
Sbjct: 222 HSAIEEKRAKLMPLAHKSATLVDLRESLQYWYAKTGRG-VTFEYVIWKDLNDTEQDVKAL 280
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K IP K+N+I +NP Y + Q+ + + E ++ G + IR RG DI AAC
Sbjct: 281 AKFCGAIPTKVNIIQYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAAC 340
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 341 GQLANKVE 348
>gi|297156855|gb|ADI06567.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
bingchenggensis BCW-1]
Length = 368
Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 178/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E EA+ +G R Q+ + + R D +DI R L
Sbjct: 20 RHLADLSPAERREAVAALG----EKPFRAGQVSRHYFARYSHDPAQWTDIPAAAREKLAA 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 76 GLLPDLMSVVRHISCDDDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEIPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA + LR+ LVP+N ++ + ++DA Y ++ RR++ EY +++ IND A L
Sbjct: 242 LHAPDDGLRDTLVPVNTRWKVREVLDAAWEYAE-TSGRRVSIEYALIRDINDQAWRADLL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F ++ G +R RG +I AC
Sbjct: 301 GRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAATER 368
>gi|114566753|ref|YP_753907.1| hypothetical protein Swol_1227 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|122318220|sp|Q0AXL8|RLMN_SYNWW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|114337688|gb|ABI68536.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 357
Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats.
Identities = 146/376 (38%), Positives = 216/376 (57%), Gaps = 24/376 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN ++K+ L+G+ ++EE LL + P R R Q++KWIY + F MSD+ + +
Sbjct: 1 MNSIEKKQLLGLDLNQMEEFLLGLEEP----RFRGRQVYKWIYQKECSSFYEMSDLPRSL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTL 116
R L++ + P ++ +++ DG+RK+L+ +IE V +P+ TL
Sbjct: 57 RKKLDEKARVSIPRVLKQRVGKDGSRKFLMEL-----DDKKKIECVLLPQSRDKKSSYTL 111
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+S+QVGC + CSFC TG RNL A EI+ Q L ++ L E
Sbjct: 112 CLSTQVGCPIACSFCATGQSGFQRNLKAFEIIGQYLGSKKELSKRLKSPRAEL------- 164
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI- 235
ISN+V MGMGEPL N+D V KS+ + +D G++ +RRIT+STSG V I ++ +E
Sbjct: 165 --ISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITISTSGEVAGIKKLAQENI 222
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+ LAISLHA N LR+ L+P+NRKYPLE+L A Y + RR+TFEY++L +N S
Sbjct: 223 QLTLAISLHACDNSLRDQLIPLNRKYPLEVLFPAIEDYIAFT-GRRVTFEYLLLDEVNMS 281
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
DA ++K+LK + A +NLIP+N G + + I F + ++ G + IR RG
Sbjct: 282 RNDANKMVKLLKPLLANLNLIPYNEIEGLPFKKPETAKIWQFYQWLQDGGLNVSIREERG 341
Query: 356 LDILAACGQLKSLSKR 371
DI AACGQL+S +R
Sbjct: 342 SDINAACGQLRSDYRR 357
>gi|220928956|ref|YP_002505865.1| ribosomal RNA large subunit methyltransferase N [Clostridium
cellulolyticum H10]
gi|254807165|sp|B8I259|RLMN_CLOCE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|219999284|gb|ACL75885.1| radical SAM enzyme, Cfr family [Clostridium cellulolyticum H10]
Length = 349
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 136/362 (37%), Positives = 195/362 (53%), Gaps = 30/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ M EELE+ L ++G + R QI+KWI GIR F M++IS+++R L +
Sbjct: 2 INLMNMTLEELEQMLSEMG----QQKFRAKQIFKWI-NSGIRSFSDMTNISKQLRDELEK 56
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I +IVD S D T K+L IE+V + K T C+SSQ GC
Sbjct: 57 VSKISRLKIVDRLQSKIDSTVKYLFELE-----DGNIIESVLMEYKHGFTACISSQAGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + RNLT E+L QV+ + G +I +IV+M
Sbjct: 112 MGCKFCASTGAGFSRNLTPGEMLDQVMTMQE-----------------DSGNRIGHIVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEPL N++NV K L I + GL R I+LST G VP I ++ +E + L++SLH
Sbjct: 155 GIGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRILQLAKENIPITLSVSLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ +D R+ ++P+N+ Y ++ LI AC+ Y +S RRITFEY M+ G NDS +DA L
Sbjct: 215 SARDDKRSAMMPVNKTYCIDKLISACKIYT-VSTKRRITFEYAMILGENDSEQDARELAG 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +NLIP N G Y S + I F ++ G + +R G DI AACGQ
Sbjct: 274 LLKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQ 333
Query: 365 LK 366
L+
Sbjct: 334 LR 335
>gi|210634763|ref|ZP_03298291.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279]
gi|210158703|gb|EEA89674.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279]
Length = 348
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 121/375 (32%), Positives = 195/375 (52%), Gaps = 32/375 (8%)
Query: 4 LKKE----SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
+++ + + EEL++ + ++G P R Q+ +WI+ + + F M+++
Sbjct: 1 MERITRSRDIRLLTLEELQDLVKELGQPA----FRAKQLNEWIHDKNVCSFDEMTNLPAA 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
+R L++ FS P + +++S DG+RK+LL+F V +ETV +P +++ +C+S
Sbjct: 57 LREKLSERFSFNVPVELVKQVSKDGSRKYLLQFS-----DGVSVETVGMPNRNKLAVCIS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQ GC++ C+FC TG L R+LTA+E++ QVL G+ ++
Sbjct: 112 SQAGCAMGCAFCATGLAGLSRSLTAQEMVDQVLHVARDFGE-----------------RV 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
+++V MG GEP NFD ++L I +D GL+ R +T+ST G +P I R E
Sbjct: 155 TSVVFMGQGEPFANFDATVQALRILNDPDGLAIGARHLTVSTCGVIPGIRRFAELPEQFT 214
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLH+ RN L+P +KY L L +A + Y + RR T+E+ M+ GIND+ +
Sbjct: 215 LAISLHSAIQGTRNQLMPGVKKYTLLRLHEAIQLYVEKT-GRRPTYEFAMIDGINDTSPE 273
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L+ G +NLI N P + S + + + + G + IR RG DI
Sbjct: 274 MQALVDFCAGTLCHVNLIQLNNIPDSPFRPSPIEKVESLQRRLTMHGVETTIRNSRGSDI 333
Query: 359 LAACGQLKSLSKRIP 373
AACGQLK R
Sbjct: 334 DAACGQLKQRRFRAQ 348
>gi|312622709|ref|YP_004024322.1| radical sam enzyme, cfr family [Caldicellulosiruptor kronotskyensis
2002]
gi|312203176|gb|ADQ46503.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kronotskyensis
2002]
Length = 341
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 122/365 (33%), Positives = 189/365 (51%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + +EL+ L +G R +QI++W+Y + D +++ E+R +
Sbjct: 2 KRFIKDLTIDELKIWLESVG----EKPFRATQIFEWLYKKNATDVMQFTNLPLELRKKIY 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + +I+ + S + K+L + IE+V++P + +CVS+QVGC
Sbjct: 58 DEFLMNSLQILQHQ-SDGESIKFLFELCDKNG-----IESVFLPYRYGNAVCVSTQVGCK 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + VRNLT E++ Q++ A + G++I+N+V+M
Sbjct: 112 MNCGFCASAIGGFVRNLTPGEMVDQIISAENF-----------------TGKRITNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISLH
Sbjct: 155 GSGEPFDNIENVFKFIEIINSKDGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L +
Sbjct: 215 APNNSLRDKLVPINKKYPIEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIDCAQELGR 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
ILKG +NLIP NP + ++ I F E +K + IR G I AACGQ
Sbjct: 274 ILKGKLVHVNLIPVNPVEEKGFRRPSKEKIKVFFETLKSYQINVTIRRELGSSISAACGQ 333
Query: 365 LKSLS 369
L+
Sbjct: 334 LRKRY 338
>gi|118475734|ref|YP_892923.1| radical SAM protein [Campylobacter fetus subsp. fetus 82-40]
gi|261886280|ref|ZP_06010319.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
fetus subsp. venerealis str. Azul-94]
gi|205829691|sp|A0RRU0|RLMN_CAMFF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|118414960|gb|ABK83380.1| radical SAM enzyme, Cfr family [Campylobacter fetus subsp. fetus
82-40]
Length = 354
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 139/373 (37%), Positives = 208/373 (55%), Gaps = 32/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + ++EL L + R QI++W+Y + R F M++IS++VR L
Sbjct: 2 RNLLDLSQDELANLLS--------PKFRAKQIYEWVYKKNARSFDEMTNISKDVRENLKS 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
F + V + S DG+ K+L + V + + +R T+CV
Sbjct: 54 EFYLDPLTCVRSETSKDGSIKYLFKLTDGKTIESVLLPMKEEISSEDGSVERHARYTICV 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + CSFC T VRNL+A EI+ Q+L + R+
Sbjct: 114 SSQVGCKMGCSFCLTAKGGFVRNLSAGEIVAQILWIKR-------------ENNIPYERR 160
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237
+ N+V MGMGEPL N NV K++SI D+ GL+ RR T+STSG I ++GE ++GV
Sbjct: 161 V-NVVYMGMGEPLDNLTNVSKAVSILKDNDGLAIGARRQTISTSGLASQIKKLGELDLGV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ +ND+
Sbjct: 220 LLAISLHAVTDELRAKLMPINKAYNIAAVMDAVRAFP-IDMRKRVMFEYLIMDKVNDNLS 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L+K+L GI AK+NLI FNP G +Y +++ F ++ G + IR +GLD
Sbjct: 279 DAKALVKLLHGIKAKVNLILFNPHEGSQYQRPSIENVDNFRTYLQSRGVTCTIRQSKGLD 338
Query: 358 ILAACGQLKSLSK 370
I AACGQLK SK
Sbjct: 339 ISAACGQLKERSK 351
>gi|148992431|ref|ZP_01822126.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae
SP9-BS68]
gi|168488437|ref|ZP_02712636.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195]
gi|147928748|gb|EDK79761.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae
SP9-BS68]
gi|183572944|gb|EDT93472.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195]
gi|332073108|gb|EGI83587.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17570]
Length = 361
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +NDS AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDSVEQALELTE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYANLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|147678122|ref|YP_001212337.1| Fe-S-cluster redox protein [Pelotomaculum thermopropionicum SI]
gi|205829798|sp|A5D1B6|RLMN_PELTS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|146274219|dbj|BAF59968.1| predicted Fe-S-cluster redox enzyme [Pelotomaculum
thermopropionicum SI]
Length = 368
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 126/367 (34%), Positives = 188/367 (51%), Gaps = 30/367 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ ++ + LE L +G R R Q+ W++ +G F+ M+++ +R L
Sbjct: 17 DRINVKDLTLAGLERLLTGMGAE----RYRAGQVAIWVFQKGAESFREMTNLPANLREKL 72
Query: 65 NQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ I PEI+ +K+S K+L P +E+V++ ++CVS+Q G
Sbjct: 73 DAAAVISRPEILAKKVSSKKDAVKYLFGLP-----DGQAVESVFMKHAYGNSVCVSTQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC + L RNL+ EI QVL R G +IS++V
Sbjct: 128 CRMGCRFCASALGGLTRNLSPGEIYDQVLGIRR-----------------DTGERISSVV 170
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG GEPL N+D + + GL R IT+ST G VP I R+ E + LA+S
Sbjct: 171 LMGSGEPLDNYDATLTFIKNVTAPYGLHIGCRHITVSTCGLVPGIRRLAREKLALTLAVS 230
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ LR+ILVP+NRKYPL L+ ACR Y + RR+TFEY +L G+ND A L
Sbjct: 231 LHAPNDRLRDILVPVNRKYPLTELMAACRDYAQET-GRRVTFEYALLAGVNDRKEHAEEL 289
Query: 303 IKILK-GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+++LK +P +NLIP NP P + + F + ++R G + +R G DI AA
Sbjct: 290 VRLLKGKMPCHVNLIPANPVPERGVKTPSRLQVELFKKILERHGLAVTVRRGLGADIDAA 349
Query: 362 CGQLKSL 368
CGQL+
Sbjct: 350 CGQLRRK 356
>gi|163784065|ref|ZP_02179018.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880664|gb|EDP74215.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1]
Length = 355
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 126/372 (33%), Positives = 204/372 (54%), Gaps = 31/372 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K +L + +ELE + + + R QI KW+Y + + + M+D+S+++R+
Sbjct: 1 MEKVNLKDLNFKELENWVKD----KNWHKFRAKQISKWLYNKKVSSYDEMTDLSKDIRNY 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L ++ ++V + S DG+ K+L R IE+V+IPE+ T+CVS+QV
Sbjct: 57 LKENTEFESLKLVSYEKSQIDGSIKFLWRLK-----DGNTIESVFIPERDHNTICVSTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C+FCYT L+RNLT EI+ Q L + +G+ +ISN+
Sbjct: 112 GCAVGCTFCYTTKDGLIRNLTTAEIIDQYLQVQRFVGN---------------ENRISNV 156
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---ML 239
V MGMGEPL N+DNV+K++ I +D L S R+IT+S+SG + I ++ + L
Sbjct: 157 VFMGMGEPLANYDNVRKAVQIMTDKNMLDLSNRKITISSSGIIAQILKMYNDPEFPQVRL 216
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SL+A +R ++PI++ +E L+ P RI EYV++K +ND+ DA
Sbjct: 217 AVSLNASDQKVRESIMPISKTNTIEDLMKTLNSLP-FKTGYRIMLEYVLIKDVNDTEEDA 275
Query: 300 LNLIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L+K++ K+NLIPFNP+ +Y D+K + F + + S+ IR +G D
Sbjct: 276 KKLVKLIGKNKKRYKVNLIPFNPFEESDYKRPDEKRVEKFQKILWEHNISAFIRWSKGRD 335
Query: 358 ILAACGQLKSLS 369
I AACGQL+
Sbjct: 336 ISAACGQLRKKE 347
>gi|29829163|ref|NP_823797.1| hypothetical protein SAV_2621 [Streptomyces avermitilis MA-4680]
gi|81719951|sp|Q82JY3|RLMN_STRAW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|29606269|dbj|BAC70332.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 368
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 179/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R D + +DI R L +
Sbjct: 20 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSRAKLQE 75
Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + T RK L R +E+V + R T+C+SSQ GC
Sbjct: 76 ALLPDLMTVVRHLSTDQDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTGEIVHQIVDGMRALRD---------GEIPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ + GL S+R IT+ST G VP I R +E LAIS
Sbjct: 182 GMGEPLANYKRVVGAIRALTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAIS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGWEYAARS-GRRLSIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 301 GRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAATER 368
>gi|284047696|ref|YP_003398035.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM
20731]
gi|283951917|gb|ADB46720.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM
20731]
Length = 353
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 133/372 (35%), Positives = 198/372 (53%), Gaps = 28/372 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+ ++G+ EEL+ L +G+ + R Q+++W+Y + DF MS++S++ R
Sbjct: 1 MCKKEIMGLTLEELQTELAGLGM----KKFRAEQVFRWLYEKAATDFSQMSNLSKDARQQ 56
Query: 64 LNQHFSIIY--PEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L ++I +++ E S T K LL +ETV + ++C+SS
Sbjct: 57 LADRYTIATAQVKVLKEYRSRDGLTHKVLLELT-----DGATVETVLMHHDYGYSVCLSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C+FC +G VRNLTA EIL Q+ +S L G ++S
Sbjct: 112 QVGCAMNCAFCASGLHGFVRNLTAAEILAQLYFFQSGL--------------QPGGERVS 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
IV+MG GEP+ N DNV K+L I G R +T+ST G VP I + + + L
Sbjct: 158 RIVVMGSGEPMLNLDNVLKALDILHSDRGQCIGYRNMTVSTCGVVPGIQELTAQGRNINL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLH S +LRN L+PINRKYP +I A Y SN R++ +EY++L GIND P DA
Sbjct: 218 AISLHGASQELRNRLMPINRKYPFPEVIQAADAY-EKSNGRQVMYEYILLAGINDRPEDA 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
NL L+ INLIP NP P + + + F + +K+ + +R G DI
Sbjct: 277 RNLADALEHKECVINLIPANPVPEKGFERPSDRAVDRFFQMLKKRRLNVTVRKEMGKDIN 336
Query: 360 AACGQLKSLSKR 371
AACGQL++ + +
Sbjct: 337 AACGQLRASALK 348
>gi|312876958|ref|ZP_07736933.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus
6A]
gi|311796273|gb|EFR12627.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus
6A]
Length = 344
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 186/365 (50%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + +E + L +G R +Q+++W+Y + D +++ E+R +
Sbjct: 2 KRLIKDLTIDEFKIWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I I+ + S + K+L + +E+V++P + +CVS+QVGC
Sbjct: 58 DEFLINSLHILKYQ-SDGESIKFLFELCDKNG-----VESVFLPYRYGNAICVSTQVGCK 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + VRNL+ E++ Q++ A + G++I+N+V+M
Sbjct: 112 MNCRFCASTIGGFVRNLSPGEMVDQIINAENF-----------------TGKRITNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISLH
Sbjct: 155 GSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L K
Sbjct: 215 APNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELGK 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG +NLIP NP + ++ I F E ++ IR G I AACGQ
Sbjct: 274 MLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACGQ 333
Query: 365 LKSLS 369
L+
Sbjct: 334 LRRRY 338
>gi|206900837|ref|YP_002251150.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12]
gi|254807170|sp|B5YF42|RLMN_DICT6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|206739940|gb|ACI18998.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12]
Length = 348
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 140/374 (37%), Positives = 209/374 (55%), Gaps = 31/374 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +++ +E+ + L G P R QI+ W+Y + I + M+++ + +
Sbjct: 1 MN-----NILSFDIDEIRDILRGWGEP----SYRADQIFDWVYKKLILNPSSMTNLPKGL 51
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R + ++FS P++V T+K+LL IETV I K+R T+CVS
Sbjct: 52 RQKIAEYFSFDIPKVVKI-TGEGNTKKYLLELE-----DGENIETVLISHKNRNTVCVSV 105
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TG L RNL EI+ Q++L + L + G +IS
Sbjct: 106 QVGCAIGCKFCATGLVGLRRNLNTHEIVGQIILIQKELFE--------------KGDRIS 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
N+V MGMGEPL N+DNV KS+ I + GL+ + ITLST G VP I ++GEE V L
Sbjct: 152 NVVYMGMGEPLLNYDNVVKSIRIINREWGLNIGSKHITLSTIGIVPKIYQLGEEDLKVRL 211
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLHA +N+LR+ ++PIN++YP+E L+++ +Y + RR+TFEYV++K ND A
Sbjct: 212 AISLHAPNNELRSKIIPINKEYPIEKLLESAFYYAEKT-GRRVTFEYVLIKNFNDREEHA 270
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L +LK P +NLIP+N P + SD KDI F + + +G + +R G I
Sbjct: 271 IELAGLLKNKPVHVNLIPWNKVPEYPWETSDLKDIFKFKKILSDAGINVTLRISYGSRIK 330
Query: 360 AACGQLKSLSKRIP 373
A CGQL++L +
Sbjct: 331 AGCGQLRALYLKSK 344
>gi|328885356|emb|CCA58595.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
venezuelae ATCC 10712]
Length = 368
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 177/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + R D +DI R L
Sbjct: 20 RHLADLTPAERKEAVAAIG----EKPFRAKQLSTHYFARYAHDPAEWTDIPAASREKLAG 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 76 ELLPDLMSVVRHISCDDDTTRKTLWRLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRISIEYALIRDINDQAWRGDLL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I AC
Sbjct: 301 GRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAAAER 368
>gi|327402251|ref|YP_004343089.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM
16823]
gi|327317759|gb|AEA42251.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM
16823]
Length = 359
Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats.
Identities = 131/371 (35%), Positives = 203/371 (54%), Gaps = 24/371 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ + EEL+ A++ G P R Q+++WI+ + + DF M++I + ++ L +
Sbjct: 6 INIRNLNLEELKAAIVGFGEPA----FRAKQVYEWIWKKNVHDFNAMANIGKSLQEKLQE 61
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F I D++IS D T K G +E V IP +R T C+SSQVGCSL
Sbjct: 62 NFYFDGITIEDQQISVDKTIKCAF----GIEGQSQVVEGVLIPTTNRMTACISSQVGCSL 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
+C+FC TG K++RNL+A EI+ QV+ ++L +SNIV MG
Sbjct: 118 SCAFCATGRLKMMRNLSAGEIVDQVVYLKNL-------------ATGKYNTNLSNIVYMG 164
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N+ NV +S+ I +D GL S +RIT+ST+G I ++G++ LA+SLHA
Sbjct: 165 MGEPLLNYKNVVRSVDILTDENGLGMSPKRITVSTAGIAKMIRKLGDDDVKFNLALSLHA 224
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R+ ++ IN L+ L +A ++ + R+TFEY++ K ND DA L
Sbjct: 225 ANDVKRSKIMDINDTNNLDELSEALLYFHEKT-GSRVTFEYIIFKDFNDGLEDARELADF 283
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQ 364
K +P KIN+I +NP EY +D++ + F+ ++ +R RG DI AACGQ
Sbjct: 284 AKVVPCKINIIEYNPIDDGEYQQADRQKVDDFARFLEEKCNLIVNVRRSRGKDIDAACGQ 343
Query: 365 LKSLSKRIPKV 375
L + +K I K
Sbjct: 344 LANKNKMIDKR 354
>gi|271963404|ref|YP_003337600.1| radical SAM protein [Streptosporangium roseum DSM 43021]
gi|270506579|gb|ACZ84857.1| radical SAM protein [Streptosporangium roseum DSM 43021]
Length = 374
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 116/367 (31%), Positives = 173/367 (47%), Gaps = 23/367 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E + ++G R Q+ + + + D + M+D+ R
Sbjct: 27 RHLADLTMAERRAVVAELG----EKPFRADQLSRHYFEKLNGDPELMTDLPATAREKFAA 82
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V E + TRK L R +E+V + R T+CVSSQ GC
Sbjct: 83 ALFPKLLTSVREMTTDAGTTRKTLWRL-----FDGALVESVLMRYTDRTTMCVSSQAGCG 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN+T EI+ QV+ L +P ++SN+V M
Sbjct: 138 MNCPFCATGQAGLTRNMTTAEIVEQVVAGARALA---------AGEVPGGPGRVSNVVFM 188
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V ++ GL S R +T+ST G VP I ++ E V LA+S
Sbjct: 189 GMGEPLANYKAVIGAVRRMVEPSPDGLGISARGVTVSTVGLVPAIGKLAAEGLPVTLALS 248
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVPIN ++ + ++DA +Y + RR++ EY ++K IND A L
Sbjct: 249 LHAPDDELRDTLVPINTRWKVAEVLDAAWNYAA-TTKRRVSIEYALIKDINDQEWRADLL 307
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K++K +NLIP NP PG ++ S +D F ++ G +R RG +I AC
Sbjct: 308 GKLIKNKLVHVNLIPLNPTPGSKWTASRPEDERAFVRRLEFHGVPVTVRDTRGREIDGAC 367
Query: 363 GQLKSLS 369
GQL +
Sbjct: 368 GQLAAAE 374
>gi|254392089|ref|ZP_05007278.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294815391|ref|ZP_06774034.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
clavuligerus ATCC 27064]
gi|326443743|ref|ZP_08218477.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
clavuligerus ATCC 27064]
gi|197705765|gb|EDY51577.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294327990|gb|EFG09633.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
clavuligerus ATCC 27064]
Length = 368
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 177/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R D +DI R L
Sbjct: 20 RHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAAWTDIPAAARERLAS 75
Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + T RK L R +E+V + R T+C+SSQ GC
Sbjct: 76 ELLPDLMSVVRHVSCDNDTTRKTLWRLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRVSIEYALIRDINDHAWRGDLL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAAAER 368
>gi|56962424|ref|YP_174150.1| hypothetical protein ABC0650 [Bacillus clausii KSM-K16]
gi|81601050|sp|Q5WKB6|RLMN_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|56908662|dbj|BAD63189.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 356
Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats.
Identities = 124/374 (33%), Positives = 209/374 (55%), Gaps = 26/374 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ KES+ G+ +L + L++ G H + R +Q+W W+Y + + F M++++++ L
Sbjct: 1 MSKESIYGLTMAQLTDWLMERG----HKKFRATQVWDWLYRKRVTTFAEMTNVNKDCLQL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L HF+I + S DGT K+L R IETV + K ++CV++QVG
Sbjct: 57 LEDHFAIETMSEHVRQESKDGTIKFLFRLQ-----DGNLIETVLMRHKYGFSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G R+L++ EI+ Q++ + L ++S++V
Sbjct: 112 CNIGCSFCASGLLTKNRDLSSGEIVEQIMKVQFHLDQV------------GKEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP NF N L I D GL+ R IT+STSG I + ++ V LA+S
Sbjct: 160 VMGIGEPFDNFQNTVDFLEIIKDHKGLAIGARHITVSTSGLAHKIYEFADLKLQVNLAVS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR+ ++ IN+ +P+E L+D+ +Y +N R+T+EY+++K +ND +AL L
Sbjct: 220 LHAPNNELRSRIMKINKAFPIEKLMDSINYYIEKTNR-RVTYEYILIKDVNDHKEEALQL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+++ K + +NLIP+NP +Y S+ + I F + +K+ G + +R G DI
Sbjct: 279 AELIGDKRHLSYVNLIPYNPVDEHSQYQRSEPEAISQFFDTLKKKGINCGVRLEHGTDID 338
Query: 360 AACGQLKSLSKRIP 373
AACGQL+S ++
Sbjct: 339 AACGQLRSKQEKKK 352
>gi|239944638|ref|ZP_04696575.1| hypothetical protein SrosN15_26832 [Streptomyces roseosporus NRRL
15998]
gi|239991102|ref|ZP_04711766.1| hypothetical protein SrosN1_27614 [Streptomyces roseosporus NRRL
11379]
gi|291448102|ref|ZP_06587492.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291351049|gb|EFE77953.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 368
Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats.
Identities = 120/368 (32%), Positives = 177/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ G R Q+ + + R D ++I R L +
Sbjct: 20 RHLADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAASREKLAE 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ D TRK L + +E+V + R T+C+SSQ GC
Sbjct: 76 ALFPELMSVIRHISCDDDTTRKTLWKLH-----DGTLVESVLMRYPERVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRISIEYALIRDINDQAWRGDLL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAASER 368
>gi|302542187|ref|ZP_07294529.1| cfr family radical SAM enzyme [Streptomyces hygroscopicus ATCC
53653]
gi|302459805|gb|EFL22898.1| cfr family radical SAM enzyme [Streptomyces himastatinicus ATCC
53653]
Length = 372
Score = 332 bits (850), Expect = 7e-89, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 180/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E EA+ +G R +Q+ + + R D +D+ R L
Sbjct: 24 RHLADLTPAERREAVAALG----EKPFRAAQVSRHYFARYTDDPAQWTDVPAAAREKLAA 79
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 80 GLLPDLMSVVRHISCDDDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 135 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEIPGGPARLSNIVFM 185
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 186 GMGEPLANYNRVIGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 245
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY ++K IND A L
Sbjct: 246 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRISIEYALIKDINDQAWRADLL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F ++R G +R RG +I AC
Sbjct: 305 GRLLKGHRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALERHGVPVTVRDTRGQEIDGAC 364
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 365 GQLAATER 372
>gi|15900662|ref|NP_345266.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae TIGR4]
gi|81620462|sp|Q97RN5|RLMN_STRPN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|14972243|gb|AAK74906.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
Length = 361
Score = 332 bits (850), Expect = 7e-89, Method: Composition-based stats.
Identities = 124/375 (33%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + +IS+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|119488056|ref|ZP_01621500.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106]
gi|119455345|gb|EAW36484.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106]
Length = 348
Score = 332 bits (850), Expect = 8e-89, Method: Composition-based stats.
Identities = 130/362 (35%), Positives = 187/362 (51%), Gaps = 31/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G+ EEL + + G P R Q+++WIY +G + ++ ++ R +
Sbjct: 9 VPLLGLSLEELTNWVQEQGQPA----YRGKQLYQWIYQKGSKSLSEITVFPKQWRETVA- 63
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+FSI I ++ D T K+LL+ IETV IP + R T+CVSSQVGC +
Sbjct: 64 NFSIGRSTIHYRSVAPDQTVKYLLKL-----ADNNIIETVGIPTEKRLTVCVSSQVGCPM 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG VRNL EI+ QVL + GR++S+IV MG
Sbjct: 119 ACDFCATGKGGFVRNLETHEIIDQVLTVQEDF-----------------GRRVSHIVFMG 161
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
MGEPL N NV ++ + +G+ +R IT+ST G I ++ V LA+SLHA
Sbjct: 162 MGEPLLNTKNVVAAIKSLNQDVGIG--QRMITVSTVGIPQQIRDFAGYQLQVTLAVSLHA 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P YPLE LI CR Y + RR++FEY++L ND P A+ L
Sbjct: 220 SNQKLREKLIPSADHYPLEKLIADCREYVN-TTGRRVSFEYILLANFNDKPEHAIELATH 278
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + +NLIP+NP +Y I TF + +K + +R RGL+ AACGQL
Sbjct: 279 LRGFQSHVNLIPYNPISEVDYQRPTSPQINTFMKALKERHIAVSVRYSRGLEADAACGQL 338
Query: 366 KS 367
++
Sbjct: 339 RA 340
>gi|302537211|ref|ZP_07289553.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
C]
gi|302446106|gb|EFL17922.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
C]
Length = 371
Score = 332 bits (850), Expect = 8e-89, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 178/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E EA+ IG R Q+ + + R D +DI R L Q
Sbjct: 23 RHLADLTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQ 78
Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + T RK L + +E+V + R T+C+SSQ GC
Sbjct: 79 ELLPELMNVVRHISCDNDTTRKTLWKLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 134 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 185 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 244
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 245 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRISIEYALIRDINDQAWRGDLL 303
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I AC
Sbjct: 304 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGAC 363
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 364 GQLAASER 371
>gi|95929456|ref|ZP_01312199.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
gi|95134572|gb|EAT16228.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
Length = 342
Score = 332 bits (850), Expect = 8e-89, Method: Composition-based stats.
Identities = 155/369 (42%), Positives = 211/369 (57%), Gaps = 30/369 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K L +EL E L +G R R Q+ +WIY RG+ D M+D+S+ +R
Sbjct: 1 MEKLDLKNFSPDELLEFLSGMG----KERFRCEQLLRWIYKRGVTDLDEMTDLSKTLRAE 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
L + I + + S DGTRK+L R IETV IP + R TLC+SSQV
Sbjct: 57 LKEKSYISDWQPEVVETSADGTRKYLFRL-----DDGQSIETVRIPMDNDRSTLCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG+ +RNLTA EI+ QV I+NI
Sbjct: 112 GCAMDCDFCVTGSFGFIRNLTAAEIVNQVCAVAK-------------------EGSINNI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V+MGMGEPL N DNV ++L I + G +S R++TLST G VP + +GE I V LA+S
Sbjct: 153 VLMGMGEPLHNLDNVVRALKIFYAAAGFDYSSRKVTLSTCGLVPQMKELGERIVVNLAVS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A +N++R+ L+PINR+YPLE L+DACR +P S+ RITFEY++++ +NDS DA L
Sbjct: 213 LNATTNEVRDKLMPINRRYPLEELMDACRRFPMASHR-RITFEYILIRDLNDSLADAKRL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K++ GI KINLIPFN G Y C DQ I F + + R +G DI AAC
Sbjct: 272 VKLMHGIRGKINLIPFNEHEGSPYRCPDQATIEAFQTYLLNRDIVAIRRASKGQDISAAC 331
Query: 363 GQLKSLSKR 371
GQLK ++
Sbjct: 332 GQLKGKLEK 340
>gi|290957076|ref|YP_003488258.1| hypothetical protein SCAB_25951 [Streptomyces scabiei 87.22]
gi|260646602|emb|CBG69699.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 368
Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats.
Identities = 126/368 (34%), Positives = 181/368 (49%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R D + +DI R L +
Sbjct: 20 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARAKLRE 75
Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + T RK L R +E+V + R T+C+SSQ GC
Sbjct: 76 ALLPELMTVVRHLSTDQDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEIPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LAIS
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAIS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGWEYTARS-GRRLSIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 301 GRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAGHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAATER 368
>gi|154175427|ref|YP_001407355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
curvus 525.92]
gi|205829690|sp|A7GVW3|RLMN_CAMC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|112802451|gb|EAT99795.1| radical SAM enzyme, Cfr family [Campylobacter curvus 525.92]
Length = 371
Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats.
Identities = 140/373 (37%), Positives = 207/373 (55%), Gaps = 32/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ ELE L + R QI++WIY + +F M ++ +++R L Q
Sbjct: 2 KNLLDYTLSELEAILS--------PKFRAKQIYEWIYKKNAENFDEMLNLPKDMRTNLAQ 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
F V + S DG+ K+L V + I +R T+CV
Sbjct: 54 EFYFDPLYCVKFEESSDGSIKYLFALKDGNTIESVLLPMKEVEVDEGGNISRHARYTICV 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + C FC T L RNL+ EI+ Q+L + R+
Sbjct: 114 SSQVGCKMGCLFCLTAKGGLKRNLSPGEIVGQILWIKK-------------TNHIPYERR 160
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
+ N+V MGMGEPL N NV K++ I + GL+ S RR T+STSG I ++G ++GV
Sbjct: 161 V-NVVYMGMGEPLDNLANVAKAIQILKEPDGLAISPRRQTVSTSGLGAQIKKLGEMDLGV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+LAISLHAV+N+LR+ L+P+N+ Y +E ++DA R +P + +R+ FEY++++G+NDS +
Sbjct: 220 LLAISLHAVTNELRSKLMPVNKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGMNDSVK 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L+K+L GI AK+NLI FNP G EY + D++ F E ++ G + IR +GLD
Sbjct: 279 DAKTLVKLLHGIKAKVNLIYFNPHEGSEYGRPELADMLEFQEYLRAHGVTCTIRQSKGLD 338
Query: 358 ILAACGQLKSLSK 370
I AACGQLK S+
Sbjct: 339 ISAACGQLKQRSQ 351
>gi|311898630|dbj|BAJ31038.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054]
Length = 366
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 115/366 (31%), Positives = 179/366 (48%), Gaps = 23/366 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ ++G R Q+ + R D + +DI R L +
Sbjct: 19 RHLADLSPAERKEAVAELG----EQPFRAKQLSNHYFGRMSADPESWTDIPAASRTKLTE 74
Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L + +E+V + R T+C+SSQ GC
Sbjct: 75 ALLPELMSVVRHVSCDDDATRKTLWKL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q+ L +P ++SN+V M
Sbjct: 130 MNCPFCATGQAGLTRNLSTAEIVEQIASGMRDLR---------TGAVPGGEARLSNVVFM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N++ V ++ +D G S+R IT+ST G VP + R +E LA+S
Sbjct: 181 GMGEPLANYNRVLSAIRRLTDPSPDGFGLSQRGITVSTVGLVPAMHRFADEGLSCRLALS 240
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ ++ ++DA +Y S RR++ EY ++K IND A L
Sbjct: 241 LHAPDDELRDELVPVNTRWKVDEVLDAAWNYAEKS-GRRVSIEYALIKDINDQAWRADLL 299
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++++ +NLIP NP PG ++ S +D F ++ G + +R RG +I AC
Sbjct: 300 GRLIRNRRVHVNLIPLNPTPGSKWTASRPEDEREFVRRLQAHGVPTTVRDTRGQEIDGAC 359
Query: 363 GQLKSL 368
GQL +
Sbjct: 360 GQLAAA 365
>gi|254382049|ref|ZP_04997411.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194340956|gb|EDX21922.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 371
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 126/368 (34%), Positives = 179/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L M E EA+ IG R Q+ + + R D +DI R L Q
Sbjct: 23 RHLADMTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQ 78
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ D TRK L + +E+V + R T+C+SSQ GC
Sbjct: 79 ELLPDLMNVLRHISCDDDTTRKTLWKLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 134 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 184
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 185 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 244
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 245 LHAPDDELRDTLVPVNTRWNVREVLDAAWEYAEKS-GRRISIEYALIRDINDQAWRGDLL 303
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K+LKG +NLIP NP PG ++ S +D F E I R G +R RG +I AC
Sbjct: 304 GKLLKGKRVHVNLIPLNPTPGSKWTASRPEDERAFVEAIARHGVPVTVRDTRGQEIDGAC 363
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 364 GQLAASER 371
>gi|169349817|ref|ZP_02866755.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552]
gi|169293385|gb|EDS75518.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552]
Length = 342
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 121/363 (33%), Positives = 189/363 (52%), Gaps = 28/363 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ E+L E I + R Q++ W+Y + R F MSD+S+E+R+ L
Sbjct: 2 KNIYDYSLEQLTEYFQSI----KQKPFRAKQVFSWLYQKDARSFDDMSDLSKELRNSLKD 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F+ +I ++++S DGT K+L IE+V + +LCV+SQVGC++
Sbjct: 58 EFNFDILKIKEKQVSRDGTIKYLFELL-----DGSLIESVLMIHDYGKSLCVTSQVGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC +G R+L+ EI+ Q++ + ++IS++V+MG
Sbjct: 113 KCKFCASGLLNKQRDLSPGEIVSQIIKIQQ-----------------DTNQRISHVVVMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEP N+DNV + I + GL+ R IT+ST G + I R +E I LAISLHA
Sbjct: 156 TGEPFDNYDNVMDFVRIINHPNGLAIGARHITISTCGLIKGIERYSDEGIQTNLAISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN L+PIN+ YP++ L Y +N R+TFEY++LK IND A L
Sbjct: 216 PNDEIRNELMPINKIYPMDKLRQVVSDYIDKTNR-RVTFEYILLKDINDDIIYARQLAHY 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ A +NLIP+N Y S ++ F + R + +R G DI ACGQL
Sbjct: 275 LRGLNAYVNLIPYNSVDEHGYQPSKKEQAELFKSELLRLHINVTMRKEHGRDIDGACGQL 334
Query: 366 KSL 368
++
Sbjct: 335 RAK 337
>gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis PHE/MN1-00]
gi|123082152|sp|Q1MQJ3|RLMN_LAWIP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis
PHE/MN1-00]
Length = 358
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 142/363 (39%), Positives = 204/363 (56%), Gaps = 15/363 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + E E ++ + R QIW+W++ + I D + M+++ Q++R L
Sbjct: 2 INLLNITYPEFESLIV---TTLQEKTYRAMQIWQWVWQKQITDIESMTNLPQKIRASLTA 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I PEIV + S DGT+K+LLR + V I ++ R T C+SSQVGCS+
Sbjct: 59 LIKINLPEIVTIQQSSDGTKKFLLRLSDGALIETVLIPSIDKAGNIRITQCLSSQVGCSM 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC T T +RNLTA EI+ QVLLA+ L D + I I NIV MG
Sbjct: 119 GCTFCSTATMGFIRNLTAGEIVSQVLLAKLHLNDNKPDKPI-----------IRNIVFMG 167
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N + ++L I GL+FS RRIT+ST G I + E LA+SLHA
Sbjct: 168 MGEPLLNLTELTRALHILHSEKGLNFSARRITVSTCGIKKGIQALSENGLAFLALSLHAS 227
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ +LR+ ++P K+ L+ LID ++Y L +ITFEY++L GINDSP A L K++
Sbjct: 228 NQELRSTIMPKAAKWDLKELIDTLKNY-SLKKREKITFEYLLLGGINDSPEHAKELAKLI 286
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
I K+NLIP+NP G YL +++I+ F + + G + +R +G DI AACGQLK
Sbjct: 287 TDIKGKLNLIPYNPAQGQPYLKPTEENILKFQKVLWSKGIVTILRKSKGQDINAACGQLK 346
Query: 367 SLS 369
+
Sbjct: 347 TTY 349
>gi|168486739|ref|ZP_02711247.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
CDC1087-00]
gi|168490855|ref|ZP_02714998.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
CDC0288-04]
gi|183570290|gb|EDT90818.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
CDC1087-00]
gi|183574611|gb|EDT95139.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
CDC0288-04]
Length = 361
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 121/375 (32%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QV C+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVDCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STS I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSVLAHKIRNFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALEFAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEYGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|239982588|ref|ZP_04705112.1| hypothetical protein SalbJ_24361 [Streptomyces albus J1074]
gi|291454431|ref|ZP_06593821.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291357380|gb|EFE84282.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 370
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 177/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R D +DI R L
Sbjct: 22 RHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAGSREKLRS 77
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 78 ELLPDLMSVVRHISCDDDTTRKTLWRLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 132
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 133 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 183
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+S
Sbjct: 184 GMGEPLANYNRVTGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVS 243
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++D+ Y S RR++ EY +++ IND L
Sbjct: 244 LHAPDDELRDTLVPVNTRWKVREVLDSAWEYAEKS-GRRVSIEYALIRDINDQAWRGDLL 302
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 303 GRLLKNKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIASHGVPVTVRDTRGQEIDGAC 362
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 363 GQLAATER 370
>gi|146297083|ref|YP_001180854.1| radical SAM protein [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|205829688|sp|A4XL78|RLMN_CALS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145410659|gb|ABP67663.1| 23S rRNA m(2)A-2503 methyltransferase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 344
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 122/365 (33%), Positives = 191/365 (52%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + +EL++ + + G R +QI++W+Y + D ++I ++R +
Sbjct: 2 KRLIKDFTFDELKKWVEETG----EKPFRANQIFEWLYKKNATDVNSFTNIPTQLRKRIE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + +V + S + K+LL IE+V++P K +C+S+QVGC
Sbjct: 58 EEFILNSLRVVKYE-SDGESIKFLLELV-----DGNAIESVFLPYKYGNAICISTQVGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + ++RNL+A E++ Q++ ++ +KISN+V+M
Sbjct: 112 MKCAFCASTIGGMIRNLSAGEMVDQIVNIENI-----------------TKKKISNVVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N +NV K + I + G + R IT+ST G V I ++ E V LAISLH
Sbjct: 155 GSGEPFDNIENVFKFIDIINSKEGKNIGARHITISTVGIVDGIYKLSEYPKQVNLAISLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LRN LVP+NRKY +E ++ A +Y +N R+TFEY ++ G+NDS A L K
Sbjct: 215 APNNNLRNKLVPMNRKYSIEDILKAVDYYISKTNR-RVTFEYALIDGVNDSIECANELAK 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
IL G +NLIP NP G + ++ + F + SG IR G I AACGQ
Sbjct: 274 ILSGKLVHVNLIPVNPVNGRNFKKPPKERVKEFYNVLILSGIQVTIRRELGSSIAAACGQ 333
Query: 365 LKSLS 369
L+S
Sbjct: 334 LRSRH 338
>gi|323490277|ref|ZP_08095492.1| ribosomal RNA large subunit methyltransferase N [Planococcus
donghaensis MPA1U2]
gi|323395947|gb|EGA88778.1| ribosomal RNA large subunit methyltransferase N [Planococcus
donghaensis MPA1U2]
Length = 357
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 129/375 (34%), Positives = 208/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ ++L+E L+ G + R Q+W W+Y++ + +F M+++S+E LL
Sbjct: 2 KNSIYGLTIDQLKEWFLENG----QKKYRAEQVWDWLYIKRVTEFAEMNNLSKECIQLLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F+I + ++ S DGT K+L + IETV + K ++CV++QVGC+
Sbjct: 58 DNFAIRTLKETVKQESADGTIKFLFQMQ-----DGNLIETVLMRFKYGNSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC +G K R+L A EI+ Q++ ++ ++S+IV+M
Sbjct: 113 IGCSFCASGLLKKSRDLNAGEIVEQIMQVQAHFD------------TQQKEERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+ N+ L + + GL+ R IT+STSG VP I +E V LAIS+H
Sbjct: 161 GIGEPFDNYTNLMDFLKVVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR ++ IN+ YP+E L+ + +Y SN RITFEY++L+ +ND +A L K
Sbjct: 221 APTNELRTRIMKINKAYPIEKLMASIDYYLEKSNR-RITFEYILLRDVNDHVEEANQLAK 279
Query: 305 IL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+L K + +NLIP+N + Y S + I F + +K+ G + +R +G DI AA
Sbjct: 280 LLEDKRHLSYVNLIPYNSVDEHDQYQQSTPEAISAFYDALKKKGINCGVRHEQGADIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + K
Sbjct: 340 CGQLRSKQIKKDKKE 354
>gi|260905210|ref|ZP_05913532.1| radical SAM enzyme, Cfr family protein [Brevibacterium linens BL2]
Length = 410
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 123/401 (30%), Positives = 188/401 (46%), Gaps = 48/401 (11%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L M +E +A+ ++G+P R QI + D + M+D+ +++R L
Sbjct: 19 KQHLADMTMDERIDAVKEMGLPA----FRAKQISTHYFSHYQTDVESMTDLPKDLRADLQ 74
Query: 66 QHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F V + + T K+L R +E+V + ++R TLCVSSQ GC
Sbjct: 75 ERFFPHLLTEVRRLRTANGDTIKFLWRLY-----DGALVESVLMRYRNRVTLCVSSQCGC 129
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-------- 176
+ C FC TG Q L RN++A EI+ QV+ A ++ +
Sbjct: 130 GMNCPFCATGQQGLTRNMSAAEIVEQVIRANQVIAAGELAPAPTSDMPAEGETALGAEAD 189
Query: 177 -----------------------RKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLS 211
++SNIV MGMGEPL N+ V ++ GL
Sbjct: 190 DEQGETSEATVDESGTSTSATGPERVSNIVFMGMGEPLANYKRVMNAVRRFVEPAPQGLG 249
Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
S RRIT+ST G VP I ++ E+I V A+SLHA ++LR+ ++P+N ++ + IDA
Sbjct: 250 MSARRITISTVGLVPGINKLAAEDIPVTFALSLHAPDDELRDEMIPVNTRWKADEAIDAA 309
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPGCEYL 327
+Y ++ RR++ EY ++K +ND P A L K L +N IP NP PG +
Sbjct: 310 YNYYQVT-GRRVSIEYALIKDMNDHPWRAELLAKKLNARGRGWVHVNPIPLNPTPGSVWT 368
Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
S+ + F + G + IR RG DI ACGQL +
Sbjct: 369 ASEPEVADEFVRRLIDQGIPTTIRDTRGSDIDGACGQLAAA 409
>gi|295396359|ref|ZP_06806525.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC
49030]
gi|294970799|gb|EFG46708.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC
49030]
Length = 441
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 123/406 (30%), Positives = 181/406 (44%), Gaps = 52/406 (12%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L + EEL +A+ G+P R Q+ YV D M+D+ + R L
Sbjct: 45 QHLADLSLEELTQAVKDKGLPG----FRAKQLATHYYVHNTTDPADMTDLPADQREELAA 100
Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V + T K+L R +E+V + ++R TLCVSSQ GC
Sbjct: 101 EFFPPLLTEVRRLRTEDGDTIKFLWRL-----FDGAMVESVLMRYRNRITLCVSSQCGCG 155
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARS----------------LLGDFPGCEDIEG 169
+ C FC TG Q L RN++ EI+ QV+ A LG+ E
Sbjct: 156 MNCPFCATGQQGLTRNMSTAEIVDQVIQANRVIAAGELAPTAGATTNYLGEEAAEVGSEA 215
Query: 170 MVIPSV-------------------GRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSM 208
+ +++N+V MGMGEPL N+ V ++
Sbjct: 216 DASDNSATLQAAGTPETSATTSAGVHDRVTNVVFMGMGEPLANYKRVMNAVRRFTTPAPA 275
Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
GL S RRIT+ST G VP I ++ E V A+SLHA +DLR+ ++P+N ++ + I
Sbjct: 276 GLGMSPRRITVSTVGLVPGIKKLAAENIPVTFALSLHAPDDDLRDEMIPVNTRWNADEAI 335
Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPGC 324
DA Y + RR++ EY ++K +ND A L K L +N IP NP PG
Sbjct: 336 DAAYDYYK-TTGRRVSIEYALIKDMNDHAWRAELLAKKLNARGRGWVHVNPIPLNPTPGS 394
Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
+ S+ + F + ++G + IR RG DI ACGQL + +
Sbjct: 395 VWTASEPEVAAEFVRRLVKAGVPTTIRDTRGKDIDGACGQLAAEDE 440
>gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073]
gi|123752954|sp|Q2RK16|RLMN_MOOTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC
39073]
Length = 354
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 144/372 (38%), Positives = 206/372 (55%), Gaps = 21/372 (5%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ L G++ +ELEE +++G R QI++W++ R + + MSD+ + R
Sbjct: 1 MTTRIDLRGLLPQELEELAVRLG----EAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRE 56
Query: 63 LLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + +++ ++ TRK LL + +Y + R T C+SSQ
Sbjct: 57 RLALVAELPPVRVLNRLVAADGLTRKLLLGLGDGNSIE--CVLMIYKDGRRRNTACLSSQ 114
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC++ CSFC TG L RNLTA EI+LQ L + L + G G +ISN
Sbjct: 115 VGCAMGCSFCATGQGGLQRNLTASEIILQALALGAELAEGEG------------GNRISN 162
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM-LA 240
IV MGMGEPL N++ V K + I D G S RRITLST G VP I R+ E + LA
Sbjct: 163 IVFMGMGEPLNNYEAVMKGVRIFEDPSGWGISHRRITLSTCGIVPGIERLAREKPPLELA 222
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHAV+N+LR+ L+PINR+YPLE LI ACR Y ++ RR+TFEY ++ G+ND DA
Sbjct: 223 VSLHAVTNELRDKLMPINRRYPLEELIPACRRYAEIT-GRRVTFEYALIAGVNDRREDAR 281
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++L+ + A +N+IP NP G + F ++ +G + IR RG DI A
Sbjct: 282 GLSRLLRDMLAFVNIIPLNPVAGSGFKGVPPAAARAFVALLQEAGLEAAIRDSRGQDIAA 341
Query: 361 ACGQLKSLSKRI 372
ACGQL+ S+ +
Sbjct: 342 ACGQLRFASREV 353
>gi|205829899|sp|A4X4J7|RLMN_SALTO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 372
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 117/370 (31%), Positives = 177/370 (47%), Gaps = 23/370 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + + ++G P R R Q+ + R +RD + M+D+ R
Sbjct: 20 MPPRHLADFDLAGRQTLVTELGEP----RFRARQVSTHYFGRLVRDPEQMTDLPAATREK 75
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L V E D T K L R +E+V + R T+C+SSQ
Sbjct: 76 LADQLLPTLLTPVRELACDDGATHKALWRLH-----DGSLVESVLMGYPDRVTVCLSSQA 130
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ Q + + ++S +
Sbjct: 131 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 181
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N++ V ++ A GL S+R IT+ST G VP I R+ E V L
Sbjct: 182 VFMGMGEPLANYNRVVAAIRRLVAPSPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 241
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ LVP+N+++ + +++A Y + RR++ EY M+K +ND P A
Sbjct: 242 ALSLHAPDDELRDELVPVNQRWKVSEVLEAAWEYAART-GRRVSIEYAMIKDVNDQPWRA 300
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L A +NLIP NP PG + S + F ++ +G S+ +R RG +I
Sbjct: 301 DLLGRLLADRLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 360
Query: 360 AACGQLKSLS 369
ACGQL +
Sbjct: 361 GACGQLAAAE 370
>gi|145593878|ref|YP_001158175.1| radical SAM protein [Salinispora tropica CNB-440]
gi|145303215|gb|ABP53797.1| radical SAM enzyme, Cfr family [Salinispora tropica CNB-440]
Length = 353
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 117/370 (31%), Positives = 177/370 (47%), Gaps = 23/370 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + + ++G P R R Q+ + R +RD + M+D+ R
Sbjct: 1 MPPRHLADFDLAGRQTLVTELGEP----RFRARQVSTHYFGRLVRDPEQMTDLPAATREK 56
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L V E D T K L R +E+V + R T+C+SSQ
Sbjct: 57 LADQLLPTLLTPVRELACDDGATHKALWRLH-----DGSLVESVLMGYPDRVTVCLSSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ Q + + ++S +
Sbjct: 112 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N++ V ++ A GL S+R IT+ST G VP I R+ E V L
Sbjct: 163 VFMGMGEPLANYNRVVAAIRRLVAPSPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 222
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ LVP+N+++ + +++A Y + RR++ EY M+K +ND P A
Sbjct: 223 ALSLHAPDDELRDELVPVNQRWKVSEVLEAAWEYAART-GRRVSIEYAMIKDVNDQPWRA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L A +NLIP NP PG + S + F ++ +G S+ +R RG +I
Sbjct: 282 DLLGRLLADRLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 341
Query: 360 AACGQLKSLS 369
ACGQL +
Sbjct: 342 GACGQLAAAE 351
>gi|320008274|gb|ADW03124.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC
33331]
Length = 368
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 179/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E +EA+ G R Q+ + + R D ++I R L +
Sbjct: 20 RHLADLTPDERKEAVAATG----EKPFRAKQLSQHYFTRYAHDPAEWTNIPAASRDKLAE 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ D TRK L + +E+V + R T+C+SSQ GC
Sbjct: 76 AMFPELMSVLRHISCDDDTTRKTLWKLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRISIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAASER 368
>gi|294054447|ref|YP_003548105.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
45221]
gi|293613780|gb|ADE53935.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
45221]
Length = 384
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 16/370 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL G E L EA+ G P R Q+ +W+Y + + + M+++ + R L+
Sbjct: 7 KPSLFGETLESLTEAVKAAGYPG----FRAKQVMEWLYKKRVGTWDAMTNLPKAFRGWLD 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI---PEKSRGTLCVSSQV 122
+ + + + + +K S D T+K+LL + + V I EKSR T+CVS QV
Sbjct: 63 ETYILYPTQPLLDKRSDDVTQKFLLELEDKSLIETVLIRAPQTGVGQEKSRKTVCVSIQV 122
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+ C FC +G RNL E++ Q++ + ED NI
Sbjct: 123 GCAYGCKFCASGLAGFRRNLGPAEVVSQLMHICRM-------EDAHTERAKDEIASFDNI 175
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
V MGMGEPL N+D + +++ I + GL+F RRIT+STSG P I ++ EE + V LAI
Sbjct: 176 VFMGMGEPLANYDTLVRTIKILNAEWGLNFGARRITVSTSGVAPKIKQLAEEGVAVRLAI 235
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH +N++RN ++P+N++YPLE LI A + + + R +T E++M++ INDS A
Sbjct: 236 SLHGATNEVRNKIMPVNKRYPLEELIPAAKAF-KERHGRMLTLEFIMIEDINDSIDQARE 294
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L KI K + A +N IP+N G E++ + F + ++++G S IR +G DI AA
Sbjct: 295 LAKIAKDLHAHVNCIPYNKVEGLEWVRPSVRKQDAFVDYLRKAGVSVTIRREKGHDINAA 354
Query: 362 CGQLKSLSKR 371
CGQL+ +++
Sbjct: 355 CGQLRLKTEK 364
>gi|320527283|ref|ZP_08028468.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204]
gi|320132307|gb|EFW24852.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204]
Length = 346
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 205/368 (55%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+S+ + + + L + G R Q+++W+Y + + FQ M+D+ + L Q
Sbjct: 2 QSIYDLNMKMAIDMLAEKG----QKSYRAKQLFQWLYRKRVDSFQEMTDMPASLLEELAQ 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+SI + + +++ DGT K+L + +ETV + +LCV+SQ+GC++
Sbjct: 58 EYSIEPVKEITRQVARDGTTKYLFQL-----ADGSSVETVLMHFHFGESLCVTSQLGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC +G K R+LTA EI+ QV+ + L G+++ N+V+MG
Sbjct: 113 GCTFCASGLLKKQRDLTAGEIVGQVMFVQKELDKI--------------GKRVDNVVIMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
GEP N+DNV + I + +GL+ R IT+ST G VP I + LAISLHA
Sbjct: 159 TGEPFDNYDNVMRFCEIINSDLGLAIGARHITISTCGIVPRIKDFAKGHYQYNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR L+PI++ YPL++L+DA Y +N RITFEY++L G+ND+ A+ L +
Sbjct: 219 PNDELRRKLMPIDQAYPLDVLMDALHEYSEGNNR-RITFEYILLHGVNDTDAHAIQLANL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G+ A +NLIP+N Y+ +++K + F + + + G + +R+ G DI AACGQL
Sbjct: 278 IRGMNAYVNLIPYNQVDENGYVSTNEKVALHFYDVLMKHGVKATLRSKHGDDIDAACGQL 337
Query: 366 KSLSKRIP 373
++ ++
Sbjct: 338 RAKHEKGK 345
>gi|326203176|ref|ZP_08193042.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782]
gi|325986822|gb|EGD47652.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782]
Length = 349
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 133/362 (36%), Positives = 194/362 (53%), Gaps = 30/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ M EELE+ L ++G + R QI+KW GIR F M++IS+++R L +
Sbjct: 2 INLMDMTLEELEQMLSEMG----QQKFRAKQIFKWT-NSGIRSFDDMTNISKQLRDELVK 56
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I +I D+ S D T K+L IE+V + K T C+SSQ GC
Sbjct: 57 VTKISRIKIADKLQSQIDSTVKYLFELE-----DGNIIESVIMEYKHGFTACISSQAGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + + RNLT E+L QV+ + G +I +IV+M
Sbjct: 112 MGCKFCASTGAEFSRNLTPGEMLDQVMTMQE-----------------DSGNRIGHIVLM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEPL N++NV K L I + GL R I+LST G VP + ++ +E + L++SLH
Sbjct: 155 GIGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRMLQLAQENIPITLSVSLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ +D R+ ++P+N+ Y ++ LI AC+ Y S RRITFEY M+ G NDS +DA L
Sbjct: 215 SARDDKRSAMMPVNKAYCIDKLISACKIYTE-STKRRITFEYAMISGENDSEQDARELAG 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +NLIP N G Y S + I F ++ G + +R G DI AACGQ
Sbjct: 274 LLKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQ 333
Query: 365 LK 366
L+
Sbjct: 334 LR 335
>gi|297202671|ref|ZP_06920068.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
sviceus ATCC 29083]
gi|197713246|gb|EDY57280.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
sviceus ATCC 29083]
Length = 368
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 126/368 (34%), Positives = 181/368 (49%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +E + +IG R Q+ + + R D +DI R L +
Sbjct: 20 RHLADLTPAERKEVVAEIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAGARGKLQE 75
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + TRK L R +E+V + R T+C+SSQ GC
Sbjct: 76 ALLPELMTVVRHLSTDQGTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V +S+ +D GL S+R IT+ST G VP I R +E LAIS
Sbjct: 182 GMGEPLANYKRVTQSIRALTDPAPDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAIS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGFEYVEKS-GRRLSIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P +NLIP NP PG ++ S +D F E I G + IR RG +I AC
Sbjct: 301 GRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVAVTIRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAATER 368
>gi|72161087|ref|YP_288744.1| ribosomal RNA large subunit methyltransferase N [Thermobifida fusca
YX]
gi|123760876|sp|Q47S46|RLMN_THEFY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|71914819|gb|AAZ54721.1| Conserved hypothetical protein 48 [Thermobifida fusca YX]
Length = 365
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 178/364 (48%), Gaps = 21/364 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E +A+ ++G R Q+ + + R D M+D+ R L +
Sbjct: 17 RHLADLDPQERRDAVAELG----EKPFRARQLAQHYFGRLEADTARMTDLPAASRERLGE 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
V +G + L V +E+V + R TLCVSSQ GC +
Sbjct: 73 ALLPQLLTPVKHVTCDNGMTRKTL----WRAFDGVLVESVLMRYPDRVTLCVSSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV+ + L +ISNIV MG
Sbjct: 129 NCPFCATGQAGLTRNLSTAEIVDQVVSSARDLARGTVAGGPG---------RISNIVFMG 179
Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
MGEPL N+ V ++ +D GL S+R IT+ST G VP I ++ E + V LA+SL
Sbjct: 180 MGEPLANYKRVLAAIRRITDPVPDGLGISQRGITVSTVGLVPAIEKLTAERMQVRLAVSL 239
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ + ++DA Y + RR++ EY +++ IND A L
Sbjct: 240 HAPDDELRDELVPVNHRWKVAEVLDAAWRYAD-TTGRRVSIEYALIRDINDQAWRADLLG 298
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+++ G A +NLIP NP PG ++ S + F ++ G S +R RG +I ACG
Sbjct: 299 RLVAGRLAHVNLIPLNPTPGSKWTASRPEVEREFVRRLRSHGVSVTVRDTRGREIDGACG 358
Query: 364 QLKS 367
QL +
Sbjct: 359 QLAA 362
>gi|333024150|ref|ZP_08452214.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071]
gi|332744002|gb|EGJ74443.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071]
Length = 369
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 180/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R +D +DI R L +
Sbjct: 21 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 77 ALLPELMSVVRHISCDDDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 131
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+A EI+ Q++ L D IP ++SNIV M
Sbjct: 132 MNCPFCATGQAGLDRNLSAAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVFM 182
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+S
Sbjct: 183 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVS 242
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 243 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRVSIEYALIRDINDQAWRGDLL 301
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK +NLIP NP PG ++ S +D F + I G +R RG +I AC
Sbjct: 302 GRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGAC 361
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 362 GQLAAAER 369
>gi|164687799|ref|ZP_02211827.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM
16795]
gi|164603074|gb|EDQ96539.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM
16795]
Length = 343
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 120/367 (32%), Positives = 194/367 (52%), Gaps = 28/367 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L EEL+E + +IG R +QI+ WIY +G + F M +I + +R L
Sbjct: 4 QKIALKNFTEEELKEFMKEIG----EKPFRGTQIYSWIY-KGAKTFDDMKNIPKSLREKL 58
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I E S K L + IE+V + R T C+S+QVGC
Sbjct: 59 EKVSYIGNLETELVLKSKVDKTKKYLF----ALNDGNIIESVMMDYDDRVTACISNQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + + L+RNL EIL Q++ + G+++SN+V+
Sbjct: 115 RMGCKFCASTMEGLIRNLEPWEILDQIIKIQE-----------------DTGKRVSNLVL 157
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG GEPL NF+N K+ L I +D GL+ R ITLST G +P + + + I + LA+SL
Sbjct: 158 MGSGEPLDNFENTKQFLKIVNDKNGLNIGYRHITLSTCGVIPKMYELADLNIPINLALSL 217
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ ++ R ++P+ + Y ++ LI AC++Y +N R+TFEY ++KG+NDS ++ +
Sbjct: 218 HSPFDEKRAEIMPVAKAYKVKDLIKACQNYIDKTNR-RVTFEYSLIKGVNDSKAESDEIS 276
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIP N ++ D+ I F + ++++ + +R G DI ACG
Sbjct: 277 RLLKGMLCHVNLIPINKVEERDFERPDKTYIYKFRDALEKNKIPTTVRNSMGSDIGGACG 336
Query: 364 QLKSLSK 370
QL+ K
Sbjct: 337 QLRRKHK 343
>gi|302341935|ref|YP_003806464.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075]
gi|301638548|gb|ADK83870.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075]
Length = 359
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 181/365 (49%), Gaps = 25/365 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K L + E+L L +G R Q+ +W++ G+ D M+ +S+ +R
Sbjct: 1 MAQKPDLRDLTAEQLARLLADLG----EKPFRARQVSQWLHGHGVDDIADMTSLSKALRA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L+ + S DGTRK L IE+V +PE TLCVS+QV
Sbjct: 57 KLSAVGRLTAMGPAKVLQSADGTRKLLFLLE-----DGQAIESVLMPEDGHHTLCVSTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC C FC T + L RNL EIL QVL AR L +F R ++N+
Sbjct: 112 GCRQGCRFCATASLGLRRNLRPAEILGQVLAARRLCDEF---------------RPLTNL 156
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N DNV +L GL S+RR+T+ST G V + + LAIS
Sbjct: 157 VFMGMGEPLDNLDNVIVALGHILGEHGLQMSQRRVTVSTVGLVDRLPLLAAASPCALAIS 216
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A + +R ++P+ +++ LE L A YP L RR+T EYV+L G+ND P A L
Sbjct: 217 LNAPNEHIRRQIMPVTKRFGLEALRRAIVDYP-LKPTRRVTLEYVLLGGVNDRPEHAREL 275
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ KG+P K+NLI FNP + + + F + ++ +R RG DI AAC
Sbjct: 276 ARWAKGLPVKVNLIAFNPHQAGPFQAPEAAAVEEFQNVLIEGHVTALLRRSRGQDIAAAC 335
Query: 363 GQLKS 367
GQL +
Sbjct: 336 GQLVA 340
>gi|295836269|ref|ZP_06823202.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74]
gi|197697366|gb|EDY44299.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74]
Length = 369
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 178/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R +D +DI R L +
Sbjct: 21 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 77 ELLPELMSVVRHISCDDDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 131
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 132 MNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVFM 182
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+S
Sbjct: 183 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVS 242
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 243 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRVSIEYALIRDINDQAWRGDLL 301
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK +NLIP NP PG + S +D F + I G +R RG +I AC
Sbjct: 302 GRLLKNKRVHVNLIPLNPTPGSRWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGAC 361
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 362 GQLAAAER 369
>gi|318056586|ref|ZP_07975309.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
SA3_actG]
gi|318075677|ref|ZP_07983009.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
SA3_actF]
Length = 369
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 179/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R +D +DI R L +
Sbjct: 21 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 77 ALLPELMSVVRHISCDDDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 131
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 132 MNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVFM 182
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+S
Sbjct: 183 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVS 242
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 243 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRVSIEYALIRDINDQAWRGDLL 301
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK +NLIP NP PG ++ S +D F + I G +R RG +I AC
Sbjct: 302 GRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGAC 361
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 362 GQLAAAER 369
>gi|169832893|ref|YP_001694228.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae Hungary19A-6]
gi|205829906|sp|B1IAU3|RLMN_STRPI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|168995395|gb|ACA36007.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
Hungary19A-6]
Length = 361
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 121/375 (32%), Positives = 207/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+ST G I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTLGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLI +NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLISYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|182435651|ref|YP_001823370.1| hypothetical protein SGR_1858 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|205829903|sp|B1VYT2|RLMN_STRGG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|178464167|dbj|BAG18687.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 368
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 118/368 (32%), Positives = 178/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E +EA+ G R Q+ + + R D ++I R L +
Sbjct: 20 RHIADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ D TRK L + +E+V + R T+C+SSQ GC
Sbjct: 76 ALFPDLMSVMRHISCDDDTTRKTLWKLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWNVREVLDAAWEYADKS-GRRISIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E + G +R RG +I AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAVAAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAAAER 368
>gi|304408290|ref|ZP_07389938.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
gi|304342759|gb|EFM08605.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
Length = 357
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 131/376 (34%), Positives = 208/376 (55%), Gaps = 26/376 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
S+ G+ +++L LL+ G H + R +Q+W+W+Y + + D+ M+D++ +
Sbjct: 2 MTNLPSIYGLTQDQLAAWLLERG----HKKFRATQVWEWLYRKRVTDYAAMTDVNPDCIA 57
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL +HF+I E ++ S DGT K+LLR IETV + K ++CV++QV
Sbjct: 58 LLAEHFAITTLEEHTKQESTDGTIKFLLRLT-----DGNLIETVLMRHKFGLSVCVTTQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ CSFC +G R+LT+ EI+ Q++ + L G ++++I
Sbjct: 113 GCNIGCSFCASGLLAKSRDLTSGEIVGQIMKVQLHLDQ------------AGQGERVTHI 160
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEP NF N+ +++ D GL+ R IT+STSG I + V LAI
Sbjct: 161 VVMGIGEPFDNFANMVDFINVVKDHKGLAIGPRHITVSTSGLANKIYEFTDSNLQVNLAI 220
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +++LR ++ INR P+ L++A +Y +N RIT EY++LK +ND AL
Sbjct: 221 SLHAPNDELRTRIMKINRAIPIAKLMEAIDYYLAKTNR-RITLEYILLKDVNDRKEHALE 279
Query: 302 LIKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L +++ + A +NLIP+NP +Y S+Q I F + +K+ G S +R G DI
Sbjct: 280 LAELVGERRSLANVNLIPYNPVDEHSQYQRSEQDSIREFYDTLKKQGVSCSVRLEHGTDI 339
Query: 359 LAACGQLKSLSKRIPK 374
AACGQL+S R +
Sbjct: 340 DAACGQLRSKQIRSAR 355
>gi|293365659|ref|ZP_06612368.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
gi|291316027|gb|EFE56471.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
Length = 349
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 121/364 (33%), Positives = 204/364 (56%), Gaps = 26/364 (7%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN F + +
Sbjct: 1 MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+ S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G
Sbjct: 57 IVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
K R+L EI+ Q++L + + ++S+IV+MG+GEP N++N
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVMGIGEPFDNYNN 159
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
V + +D G++ R IT+STSG I E + V LA+SLHA +N+LR+ ++
Sbjct: 160 VLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIM 219
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKI 313
INR +P+E L A +Y +N R+TFEY+ML +ND AL L ++LK I + +
Sbjct: 220 KINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYV 278
Query: 314 NLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AACGQL+S + +
Sbjct: 279 NLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMKR 338
Query: 373 PKVP 376
+
Sbjct: 339 DRQK 342
>gi|172058977|ref|YP_001815437.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
sibiricum 255-15]
gi|205829757|sp|B1YG36|RLMN_EXIS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|171991498|gb|ACB62420.1| radical SAM enzyme, Cfr family [Exiguobacterium sibiricum 255-15]
Length = 357
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 131/374 (35%), Positives = 206/374 (55%), Gaps = 26/374 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K S+ G+ E++ E L G H R Q+W W+Y + + F M++++++ L
Sbjct: 1 MNKPSIYGLTLEQMTEWLSHQG----HKPFRAKQVWDWLYRKRVTTFAEMTNVNKDCLEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+Q F+I ++ S DGT K+L + IETV + K ++CV++QVG
Sbjct: 57 LDQSFAIDSMTQAVKQESADGTIKFLFKLY-----DGSLIETVLMRHKYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+L+A EI+ Q++ + L ++S++V
Sbjct: 112 CNIGCSFCASGLIKKSRDLSAGEIVEQIMNVQHHLD------------AVGKEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP NFDN+ L++ D GL+ R IT+STSG I + + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFDNMVDFLNVIKDHNGLAIGARHITVSTSGLADKIYKFADLKLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ INR PLE L+ A +Y +N +IT EY++L+G+ND A+ L
Sbjct: 220 LHAPNNELRTQIMKINRAIPLEKLMPAIDYYVKTTNR-KITIEYILLRGVNDQKAQAIEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K+ K +NLIP+NP Y S +DI TF + +K++G + +R G DI
Sbjct: 279 AKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDISTFYDTLKKNGLNCGVRLEHGTDID 338
Query: 360 AACGQLKSLSKRIP 373
AACGQL+S +
Sbjct: 339 AACGQLRSKQIKKD 352
>gi|317125387|ref|YP_004099499.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM
43043]
gi|315589475|gb|ADU48772.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM
43043]
Length = 393
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 119/370 (32%), Positives = 179/370 (48%), Gaps = 19/370 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
L + E +E + +G H R Q+ + R + D + M+D+ + VR L
Sbjct: 35 RHLADLTPAERKEVVESLG----HQGFRARQLSTHYFERLVDDPEQMTDLPKAVRADLVR 90
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ IV + T K+ R +E+V + +R T+C+SSQ GC
Sbjct: 91 DLLPPLLAPIVRRQADDGQTMKYAWRLH-----DGAIVESVLMRYPNRVTICISSQAGCG 145
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EI+ QV+ A L +G + ++SN+V M
Sbjct: 146 MNCPFCATGQAGLTRNMSTAEIVEQVVWAARALRTGELAGGQDGDREHPL--RVSNVVFM 203
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGE L N+ ++ +D GL S R IT+ST G VP I ++ E I V LA+S
Sbjct: 204 GMGEALANYGAAIGAIRRLTDPAPDGLGISARGITMSTVGLVPAIDKLAAEGIPVTLALS 263
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVPIN ++ ++ IDA Y + RR++ EY +++ IND A L
Sbjct: 264 LHAPDDELRDELVPINTRWKVDEAIDAAHRYYE-TTGRRVSIEYALIRDINDQGWRADLL 322
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L +N IP NP PG ++ S F E ++ G + IR RG DI
Sbjct: 323 AQKLNRRGRGWVHVNPIPLNPTPGSKWTASRPGVEQNFVERLRAHGIPTTIRDTRGQDID 382
Query: 360 AACGQLKSLS 369
ACGQL + +
Sbjct: 383 GACGQLAAAT 392
>gi|160915438|ref|ZP_02077649.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991]
gi|158432558|gb|EDP10847.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991]
Length = 347
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 134/368 (36%), Positives = 202/368 (54%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SL +E+ E L G + R QI++W+Y + + MSD+S E R +L++
Sbjct: 2 KSLYDFNYDEMGEMALAHGW----KKFRGHQIFQWLYRKRVASIDEMSDLSLETRRVLSE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++ + E+ D+++S DGT K+L IE+V + ++CV+SQVGC++
Sbjct: 58 NYELTDLELRDKQVSSDGTTKYLFALK-----DGSLIESVLMQFDYGKSICVTSQVGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC +G K R+LT+ E++ QVL + L + ++S+IV+MG
Sbjct: 113 ACAFCASGLTKKKRDLTSGEMVSQVLYVQRDLD--------------AQKERLSHIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N+D+V L + GL R IT+ST G VP I +E LAISLHA
Sbjct: 159 TGEPFDNYDHVMNFLRTVNHDRGLGIGARHITISTCGVVPRIYDFSKEHTQYNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
SN+LRN L+PIN+ YPLE L+ A R+Y +N R+TFEY++LKG+ND + L K+
Sbjct: 219 PSNELRNQLMPINKAYPLEELMQAIRYYTSENNR-RLTFEYILLKGVNDGMKQVNELAKL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ A +NLIP+N +L ++ + F + + + G IR G DI AACGQL
Sbjct: 278 LKGLNAYVNLIPYNAVDENGFLGVKYEEAMVFYDALMKRGIRCTIRKEHGADIDAACGQL 337
Query: 366 KSLSKRIP 373
+ R
Sbjct: 338 RVKHLRKE 345
>gi|326776285|ref|ZP_08235550.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1]
gi|326656618|gb|EGE41464.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1]
Length = 368
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 119/368 (32%), Positives = 178/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E +EA+ G R Q+ + + R D ++I R L +
Sbjct: 20 RHIADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE 75
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ D TRK L + +E+V + R T+C+SSQ GC
Sbjct: 76 ALFPDLMSVMRHISCDDDTTRKTLWKLH-----DGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+S
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RRI+ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWNVREVLDAAWEYADKS-GRRISIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAAAER 368
>gi|255323622|ref|ZP_05364752.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
gi|255299336|gb|EET78623.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
Length = 363
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 135/375 (36%), Positives = 207/375 (55%), Gaps = 32/375 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ +EL++ L R QI++W+Y + F M ++ +++R L Q
Sbjct: 2 KNLLDFTLDELKDQLS--------PPFRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQ 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
F + + V + S DG+ K+L V + + +R T+CV
Sbjct: 54 EFYLDPLKCVKFERSADGSIKYLFELKDGLRIESVLLPMKEELNDENGEVTRHARYTICV 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + CSFC TG L RNLT EI+ Q+L + R+
Sbjct: 114 SSQVGCRMGCSFCLTGKSGLTRNLTPGEIVGQILCIKR-------------ENKIPYERR 160
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
+ N+V MGMGEPL N +NV K++ I ++ GL+ + RR T+STSG I ++G ++GV
Sbjct: 161 V-NVVYMGMGEPLDNLENVSKAIKILKENDGLAITPRRQTVSTSGLGSQIKKLGEMDLGV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+LAISLHAV+N+LR+ L+PIN Y +E +++A R +P + +R+ FEY+++K +ND +
Sbjct: 220 LLAISLHAVTNELRSKLMPINNAYKIESVMEAVRGFP-IDMRKRVMFEYLVIKDMNDGIK 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L+ +L GI AK+NLI FNP G EY + D+ F ++ G + IR +GLD
Sbjct: 279 DAKKLVSLLHGIKAKVNLIYFNPHEGSEYGRPNTADMEAFQTYLRDHGVTCTIRQSKGLD 338
Query: 358 ILAACGQLKSLSKRI 372
I AACGQLK ++
Sbjct: 339 ISAACGQLKERDNQM 353
>gi|154147902|ref|YP_001407255.1| radical SAM protein [Campylobacter hominis ATCC BAA-381]
gi|205829692|sp|A7I414|RLMN_CAMHC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|153803911|gb|ABS50918.1| radical SAM enzyme, Cfr family [Campylobacter hominis ATCC BAA-381]
Length = 358
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 135/376 (35%), Positives = 207/376 (55%), Gaps = 32/376 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ +EL E L + R QI++WIY + + DF M ++ ++R L
Sbjct: 2 KNLLDFSLDELGELLK--------PKFRAKQIYEWIYHKNVDDFLQMKNLPLQMREDLAN 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARC--------IGGPVEIETVYIPEKSRGTLCV 118
F I + + S DG++K+L + + E I R T+CV
Sbjct: 54 EFYIGGLNVSKCEQSVDGSKKYLFELKDGKTIESVLLPMKDEITDENGEILRHKRYTICV 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + C+FC T VRNL+A EI+ Q+ L + + R+
Sbjct: 114 SSQVGCKIGCAFCLTAKGGFVRNLSAGEIVEQIRLIKKI-------------NKIPYERR 160
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
I N+V MGMGEPL N +NV K++ I + GL+ S RR T+STSG I ++GE GV
Sbjct: 161 I-NVVYMGMGEPLNNLENVAKAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGEMNLGV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+LAISLHAV+++LR L+PINR Y + ++ A R +P + +R+ FEY+++ G+NDS
Sbjct: 220 LLAISLHAVNDELREKLMPINRAYNIASIMQAVREFP-IDLRKRVMFEYLVMDGVNDSIN 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L+++L GI AK+NLI FNP G ++ +++++ F + + G + IR +GLD
Sbjct: 279 DAKTLVRLLNGIKAKVNLIYFNPHIGSKFHRPSEENMIKFQDYLSVHGITCTIRQSKGLD 338
Query: 358 ILAACGQLKSLSKRIP 373
I AACGQL+ + +
Sbjct: 339 ISAACGQLREKNLKEK 354
>gi|302865911|ref|YP_003834548.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC
27029]
gi|315502468|ref|YP_004081355.1| radical sam enzyme, cfr family [Micromonospora sp. L5]
gi|302568770|gb|ADL44972.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC
27029]
gi|315409087|gb|ADU07204.1| radical SAM enzyme, Cfr family [Micromonospora sp. L5]
Length = 381
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 120/370 (32%), Positives = 180/370 (48%), Gaps = 23/370 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ L + + + ++G P R Q+ + R +RD + M+D+ R
Sbjct: 19 SMPPRHLADLDLPGRQALVAELGEPA----FRAKQVSNHYFGRLVRDPERMTDLPAATRE 74
Query: 63 LLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L V E D TRK L R +E+V + R T+C+SSQ
Sbjct: 75 RLAGELLPTLLTPVRELACDDGATRKALWRLH-----DGSLVESVLMGYPDRVTVCISSQ 129
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C FC TG L RNL+ EI+ Q + V+ ++S+
Sbjct: 130 AGCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGVVAGSPPRLSH 180
Query: 182 IVMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
+V MGMGEPL N+ V ++ A GL S+R IT+ST G VP I R+ E V
Sbjct: 181 VVFMGMGEPLANYSRVVAAIRRLVAPAPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVT 240
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA ++LR+ LVP+N+++ + ++DA Y + RR++ EY M+K +ND P
Sbjct: 241 LALSLHAPDDELRDELVPVNQRWKVSEVLDAAWDYAA-TTGRRVSIEYAMIKDVNDQPWR 299
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L ++L G A +NLIP NP PG + S + F ++ +G S+ +R RG +I
Sbjct: 300 ADLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREI 359
Query: 359 LAACGQLKSL 368
ACGQL +
Sbjct: 360 DGACGQLAAA 369
>gi|319937496|ref|ZP_08011901.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
29_1]
gi|319807336|gb|EFW03945.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
29_1]
Length = 342
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 125/364 (34%), Positives = 196/364 (53%), Gaps = 28/364 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+S+ +E+L + L++G + R +Q+++W+Y++ + F M++ISQ +R L+
Sbjct: 2 KSIYDYTQEQLIDEFLELG----EKKFRATQVFEWLYLKNVNSFHEMNNISQGLRQKLSA 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+SI +I +++S DGT K+L IE V + +LC++SQ+GC++
Sbjct: 58 LYSIGPLQINVKQVSKDGTIKYLFELEDGG-----LIEAVLMVHDYGRSLCITSQLGCNM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC +G K RNLTA E++ QVL G ++S++V+MG
Sbjct: 113 ACEFCASGLLKKQRNLTAGEMVNQVLTVMH-----------------DTGERVSHVVVMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEP N+DN+ + I + GL+ R IT+ST G I E I LAISLHA
Sbjct: 156 TGEPFDNYDNMMNFIHIINHPKGLAIGARHITISTCGLCDKIEMYAHEGIQSNLAISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN L+PIN+KYP++ L + +Y +N R+T EY++LKG+ND A L
Sbjct: 216 PNDEIRNQLMPINKKYPMDKLRETLAYYIQKTNR-RVTLEYILLKGVNDDITHARQLAHY 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ A +NLIP+N Y S QKD+ F + R + R G DI ACGQL
Sbjct: 275 VKGLNAYVNLIPYNAVDEHGYQQSLQKDVEAFKAELLRFHINVTQRKEHGRDIDGACGQL 334
Query: 366 KSLS 369
++
Sbjct: 335 RAKK 338
>gi|257065510|ref|YP_003145182.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM
20476]
gi|256793163|gb|ACV23833.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM
20476]
Length = 344
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 185/364 (50%), Gaps = 28/364 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + ++++ + L ++ P R Q+ +WIY RG + M+++S+ +R L++
Sbjct: 8 IKALSQQQIVDLLAEMEQPA----FRAKQLVQWIYGRGASTYDEMTNLSKALRQELSEKA 63
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ EI+D+++S DGTRK++++F +E V +P + R T+C S+QVGC + C
Sbjct: 64 PLRTAEIIDKQVSKDGTRKYVVQFY-----DGAAVEMVAMPYEDRMTVCFSTQVGCPMAC 118
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
SFC TG + RNL E+L Q+++A + R++SN+V MG G
Sbjct: 119 SFCATGKEGFTRNLLPGEMLDQIIIAEKDM-----------------NRRVSNLVGMGQG 161
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N+DNV +L A+ G R IT+ST G + I E LA+SLH+
Sbjct: 162 EPLLNYDNVMAALRFANSKDGRGIGARHITISTCGILKGIDDFSREKEQFTLAVSLHSAI 221
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ R+ L+P PL L A + Y + RR T EY+M+ G ND L+
Sbjct: 222 QETRDELMPKVANQPLFRLKSALQTYVKRT-GRRATLEYIMINGYNDDDDHLDALVDFCD 280
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
+ +NLIP N G + S +K F + SG + +R RG DI ACGQLK+
Sbjct: 281 DLLCHVNLIPLNNIEGSPWQPSSKKQTQKFLNVLNASGTEATLRDSRGADIDGACGQLKN 340
Query: 368 LSKR 371
K+
Sbjct: 341 KRKQ 344
>gi|148655521|ref|YP_001275726.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus sp.
RS-1]
gi|205829870|sp|A5UT23|RLMN_ROSS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|148567631|gb|ABQ89776.1| radical SAM enzyme, Cfr family [Roseiflexus sp. RS-1]
Length = 399
Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats.
Identities = 129/400 (32%), Positives = 194/400 (48%), Gaps = 41/400 (10%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +L + E+E + G P R QI++ +YV + M+D+ +
Sbjct: 2 MNQDTLPNLYDLSLAEMERLMTAWGQPA----YRARQIFRQLYVNLVDSPLAMTDLPLAL 57
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + ++ G + L + V IE+V + R T+CVS+
Sbjct: 58 RERLVAETRLAPLAPEQVHVADQGLTRKALF----RLENGVLIESVLMIYPDRATVCVST 113
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR--- 177
Q GC + C FC TGT L+RNL+ +I+ QV+ A + F I + P
Sbjct: 114 QAGCGMGCVFCATGTLGLLRNLSPGDIVAQVVWAAREMRRFAAERCISPSLAPPDDDSWW 173
Query: 178 -------------------KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
++SNIV MGMGEP N+D +++ I D GL+ R +T
Sbjct: 174 TPDTLEDQGSSEARSISVSRLSNIVFMGMGEPFANYDRWWRAVEILHDPRGLNMGARSMT 233
Query: 219 LSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+ST G +P I R+ E + LAISLHA + LR+ L+P+NR+YPL L++A R Y +
Sbjct: 234 VSTVGLIPGIRRLATETLPINLAISLHAPDDALRSALMPVNRRYPLAALLEATRDYLAAT 293
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKG---------IPAKINLIPFNPWPGCEYLC 328
RR++FEYV+L+G ND P A L +L G +NLIP+NP PG
Sbjct: 294 -GRRVSFEYVLLQGKNDEPEHAAKLAALLHGEAGTTPLPLHLVHVNLIPWNPVPGMPLGR 352
Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
S+++ ++TF ++ G + +R RG+ I AACGQL
Sbjct: 353 SERRRVLTFQRILRERGIACTVRVERGVSIAAACGQLAGA 392
>gi|217077834|ref|YP_002335552.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B]
gi|217037689|gb|ACJ76211.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B]
Length = 341
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 130/368 (35%), Positives = 202/368 (54%), Gaps = 30/368 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++++ EEL +G+ + R Q++ WIY + + DF+ M+++S+E R +L+
Sbjct: 2 KKNILDFNYEELVNEFKSLGLE----KYRVDQVFDWIYKKKVFDFKDMTNLSKEHRRILD 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++F I P+++D +IS D T K+L P IE+V + + R T C+S+QVGC
Sbjct: 58 ENFGIQIPKLLDMQISKIDRTTKFLWELP-----DGNTIESVALFHEGRVTACISTQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ CSFC TG VRNLTA EI+ Q+L ++ N+V
Sbjct: 113 PVKCSFCATGQSGYVRNLTAGEIVSQILGIE-----------------VHRKIRVGNVVY 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N++N KS+ + ++ RRIT+ST G I + E V LA+SL
Sbjct: 156 MGMGEPLLNYENTIKSVKMLNNKKMFGIGIRRITISTVGVPEKIIDLAESGLDVKLALSL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N R+ ++P+N++Y +E LI A + Y ++N R+T EY+++K ND P DA L
Sbjct: 216 HATTNFKRDQIIPLNKQYSIEELIFAVKKYQEITN-NRVTIEYILIKEFNDYPEDAEKLA 274
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIP NP Y + + F E + + G IR +G DI AACG
Sbjct: 275 ELLKGLSVYVNLIPVNPV-NPNYYRPSRWAMERFKEILTKYGIECEIRAEKGTDIDAACG 333
Query: 364 QLKSLSKR 371
QL+ + +
Sbjct: 334 QLRRRNLK 341
>gi|222099877|ref|YP_002534445.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
gi|254807220|sp|B9K7Z6|RLMN_THENN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
Length = 343
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 131/366 (35%), Positives = 205/366 (56%), Gaps = 30/366 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + +EL + +G+ R R QI W++ + + +F M+++S++ R LL +
Sbjct: 2 KNLLDLSYDELVSEITSLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKQHRALLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HF+I + +++++++S DGT K+L IE+V I R T C+S+QVGC
Sbjct: 58 HFTIPFLKLLEKRVSKIDGTTKFLWELE-----DGNTIESVMIFHPGRITACISTQVGCP 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG VRNLT EI+ Q+L G+KI N+V M
Sbjct: 113 VGCTFCATGMSGFVRNLTTGEIVSQILSMEK-----------------EEGKKIGNVVYM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N++N KS+ I + + RRIT+ST G I ++ +E V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N R+ LVP+NRKY +E +++A + Y + +R+T EYV+++G+ND DA L +
Sbjct: 216 APTNFKRDQLVPLNRKYSVEEILNAIKVY-QMKTGKRVTIEYVLIRGVNDEISDAKKLAE 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
ILKG+ +NLIP NP ++ I+ F + +G + IR +G DI AACGQ
Sbjct: 275 ILKGLKVFVNLIPVNPTV-AGLSKPSRQRILAFKRILLENGIEAEIRQEKGSDIEAACGQ 333
Query: 365 LKSLSK 370
L+ K
Sbjct: 334 LRLKRK 339
>gi|223038329|ref|ZP_03608623.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
gi|222880186|gb|EEF15273.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
Length = 416
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 141/376 (37%), Positives = 212/376 (56%), Gaps = 32/376 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ EL+E L R QI++W+Y + F M ++ +++R L Q
Sbjct: 2 KNLLDFTLNELKEQLS--------PPFRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQ 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
F + V + S DG+ K+L V + I +R T+CV
Sbjct: 54 EFYFDPLKCVKFEQSADGSIKYLFELKDGLRIESVLLPMKEEQTNEQGKISRHARYTVCV 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + C+FC T LVRNLTA EI+ Q+L + R+
Sbjct: 114 SSQVGCKMGCAFCLTAKGGLVRNLTAGEIVGQILWIKR-------------ENKIPYERR 160
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
I N+V MGMGEPL N +V K++ I +++ GL+ S RR T+STSG I ++G ++GV
Sbjct: 161 I-NVVYMGMGEPLDNLASVSKAVKILTENDGLAISPRRQTVSTSGLGNQIKKLGEMDLGV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+LAISLHAV+++LR+ L+PIN+ Y +E ++DA R +P + +R+ FEY++++G+NDS
Sbjct: 220 LLAISLHAVTDELRSRLMPINKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGLNDSLA 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L+++L GI AK+NLI FNP G E+ + D+V F + + G + IR +GLD
Sbjct: 279 DAKKLVRLLHGIRAKVNLIYFNPHEGSEFERPELSDMVKFQDYLCAHGITCTIRQSKGLD 338
Query: 358 ILAACGQLKSLSKRIP 373
I AACGQLK S++I
Sbjct: 339 ISAACGQLKQRSEKIN 354
>gi|297564808|ref|YP_003683780.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
gi|296849257|gb|ADH62272.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
Length = 344
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 129/347 (37%), Positives = 190/347 (54%), Gaps = 24/347 (6%)
Query: 24 IGIPQRHVR---MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80
+G+ + + R QI W+Y RG+R++ M+D+ + +R L + + + V +
Sbjct: 13 LGLAPQALPGEGYRKEQIAHWLYARGVREWSEMTDLPKGLRQELAEKYRVSEFAHVAPFV 72
Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
S DG K+L + E VY+P R T+C+SS VGC C+FC TG R
Sbjct: 73 SQDGAVKYLYTL-----WDGQKTEAVYMPYAGRKTICISSMVGCPAGCTFCATGKMGFGR 127
Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
NLTA EIL Q+L A G P R+I N+V+MGMGEPL N ++V ++
Sbjct: 128 NLTAAEILDQILFAAHHQGHSP--------------REIRNVVLMGMGEPLLNLNHVLEA 173
Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259
+ D GL+ S RRITLST G I R+ +E GV LA+SLHA + R ++P
Sbjct: 174 IRRMLDPQGLAMSPRRITLSTVGIPRGIYRLAQEDLGVRLALSLHAPDDQTRQKIIPTAH 233
Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
+Y + +++A RHY + R+T EY +LKG+ND P A L +L G+ A +NLIP+N
Sbjct: 234 RYSIAEIMEAVRHYYAQTKR-RVTLEYTLLKGLNDHPWQARALAGLLAGLSAHVNLIPWN 292
Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
PW G + + ++ I+ F+ ++R G +R RG D+ AACGQL
Sbjct: 293 PWEGAPHQGTGKEKILAFAAALERMGIPVSVRWSRGRDVGAACGQLA 339
>gi|110639497|ref|YP_679706.1| hypothetical protein CHU_3124 [Cytophaga hutchinsonii ATCC 33406]
gi|123354303|sp|Q11QF0|RLMN_CYTH3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|110282178|gb|ABG60364.1| 23S rRNA m(2)A-2503 methyltransferase [Cytophaga hutchinsonii ATCC
33406]
Length = 365
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 24/369 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+KK+ + + EEL++ + G R+ Q+++W++ R R F+ M+++S+E R L
Sbjct: 20 IKKKCIRSLSAEELKDFFVASG----EKAFRSRQVYEWLWKRSARSFEQMTNLSKETRTL 75
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +FSI I +++S DGT K+ + +E V IP R T C+SSQVG
Sbjct: 76 LENNFSINPVTISQKQVSTDGTIKFGFKLH-----DGYLVEGVLIPADDRMTACISSQVG 130
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSLTC FC TG RNL EI QV+L + + ++NIV
Sbjct: 131 CSLTCKFCATGYMDRKRNLEPYEIYDQVVLIKEAAEE-------------HYQTPLTNIV 177
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MGMGEPL N+ NV K + + GL + +RITLST+G I ++G+E LA+S
Sbjct: 178 LMGMGEPLLNYTNVLKGIDKVTSEEGLHIASKRITLSTAGIAKMITKLGDEKVKFRLALS 237
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ RN ++PIN L +L ++ H+ + + +TFEY++ G+ND+ +DA L
Sbjct: 238 LHAANDVKRNTIMPINETNNLNVLKESLLHFCKETGSS-VTFEYIVFDGVNDTAQDAKEL 296
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K IP KIN+I +NP +++ + + F + + G IR RG DI AAC
Sbjct: 297 YAFAKNIPCKINIIEYNPIQEADFMNTSVDKLEQFKKVLTDKGIIVNIRRSRGKDIDAAC 356
Query: 363 GQLKSLSKR 371
GQL +
Sbjct: 357 GQLAIKEVK 365
>gi|300726533|ref|ZP_07059979.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14]
gi|299776261|gb|EFI72825.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14]
Length = 349
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 136/379 (35%), Positives = 207/379 (54%), Gaps = 31/379 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN L+K+SL+G+ +EL++ +G+P QI KW+Y ++ M+++S+
Sbjct: 1 MN-LEKKSLLGLTLDELKDVAKSLGMPA----FTGGQIAKWLYEYHVKSIDEMTNLSKAN 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + ++I E +D + S DGT K+L +ETV+IP++ R TLCVSS
Sbjct: 56 RQKLEEQYTIGCAEAIDAQHSVDGTIKYLFPT-----ANGKFVETVFIPDEDRATLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG Q +L+A +IL Q+ K++
Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLSAADILNQIYSL-------------------PEVDKLT 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIV MG GEP+ N DNV ++ I + S G ++S +RIT+S+ G + R EE +A
Sbjct: 152 NIVFMGQGEPMDNLDNVLRATDILTASYGWAWSPKRITVSSVGVRNKLKRFLEESQCHVA 211
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
IS+H+ + R L+P R +E ++D R+Y S+ RR+TFEY++ G+NDS A
Sbjct: 212 ISMHSPIPEQRAELMPAQRGMSIEEVVDLLRNY-DFSHQRRLTFEYIVFGGVNDSTTHAR 270
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+IK+LKG+ +INLI F+ P +D+K + F + + G + IR RG DI A
Sbjct: 271 EIIKLLKGLDCRINLIRFHQIPEVALHGADEKTMENFRDYLTNHGIHTTIRASRGQDIFA 330
Query: 361 ACGQLKSLSKRIPKVPRQE 379
ACG L S SK+I K+ +
Sbjct: 331 ACGLL-STSKKIGKIRHDQ 348
>gi|172037640|ref|YP_001804141.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp.
ATCC 51142]
gi|205829743|sp|B1WU13|RLMN_CYAA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|171699094|gb|ACB52075.1| CHP48-containing protein [Cyanothece sp. ATCC 51142]
Length = 343
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 129/362 (35%), Positives = 187/362 (51%), Gaps = 31/362 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G +L + + + G P R Q+ +W+Y +G+R +S + R L +
Sbjct: 8 LLGKSVGQLTDWVKQQGQPA----YRGKQLHQWLYQKGVRSLTEISVFPKAWREELKD-Y 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I IV I+ D TRK+LL G + IETV IP R T+CVSSQVGC + C
Sbjct: 63 PIGRSNIVHCTIAPDQTRKYLLSL-----GDGLIIETVGIPTSKRLTVCVSSQVGCPMNC 117
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNLT EI+ QVL + R++S++V MGMG
Sbjct: 118 DFCATGKGGYTRNLTCAEIVDQVLTVQEDF-----------------QRRVSHVVFMGMG 160
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N V K++ I + +G+ +R +T+ST G I + V A+SLHA +
Sbjct: 161 EPLLNLKEVIKAVKILNQDVGIG--QRSLTISTVGVPKKILELAHHQLQVTFAVSLHAAN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P + YPL L+ CR Y ++ RR+TFEY++L G+ND P + L K L
Sbjct: 219 QTLREQLIPSAKSYPLPKLLADCRKYVEIT-GRRVTFEYILLGGVNDLPEQGIQLAKCLT 277
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y D + I F ++ + +R RGL+ AACGQL++
Sbjct: 278 GFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAVSVRYSRGLEANAACGQLRA 337
Query: 368 LS 369
+S
Sbjct: 338 MS 339
>gi|302522180|ref|ZP_07274522.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
SPB78]
gi|302431075|gb|EFL02891.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
SPB78]
Length = 372
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 179/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R +D +DI R L +
Sbjct: 24 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 79
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 80 ALLPELMSVVRHISCDDDTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 135 MNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVFM 185
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+S
Sbjct: 186 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVS 245
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 246 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKS-GRRVSIEYALIRDINDQAWRGDLL 304
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK +NLIP NP PG ++ S +D F + I G +R RG +I AC
Sbjct: 305 GRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGAC 364
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 365 GQLAAAER 372
>gi|158522322|ref|YP_001530192.1| radical SAM protein [Desulfococcus oleovorans Hxd3]
gi|205829745|sp|A8ZV25|RLMN_DESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|158511148|gb|ABW68115.1| radical SAM enzyme, Cfr family [Desulfococcus oleovorans Hxd3]
Length = 371
Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats.
Identities = 155/364 (42%), Positives = 210/364 (57%), Gaps = 26/364 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + R + L I R Q++KW++V F M++IS+ VR LL + F
Sbjct: 28 IQNLTRARFADWLNAHNI----APYRADQVFKWLFVHRAESFDQMTNISKPVRTLLAESF 83
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I +I + S DGTRK+L IE+V IPE+ TLCVS+QVGC+ C
Sbjct: 84 IIGRLKIARTQQSADGTRKYLFELS-----DGEHIESVLIPEEDHFTLCVSTQVGCAQGC 138
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+FC T + VRNLT EI QVL A L +++NIV+MGMG
Sbjct: 139 AFCMTAKKGFVRNLTPAEITGQVLGALKTLA---------------PEERLTNIVLMGMG 183
Query: 189 EPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
EPL N+DNV SL D GL FS RR+TLSTSG VP +A +G V LA+SL+A
Sbjct: 184 EPLANYDNVITSLDTICDGDCGLQFSTRRVTLSTSGLVPRMAPLGLATTVNLAVSLNATD 243
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
N R++L+PIN+ YP+E+L++ACR YP LSN R+ITFEY+++ G+NDS +DAL L+K+L+
Sbjct: 244 NKTRDMLMPINKTYPIEVLLEACRTYP-LSNRRKITFEYILMAGVNDSEKDALRLVKLLR 302
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
I AK+NLIPFN G + D I F + + Y+ R +G DI AACGQL +
Sbjct: 303 SIKAKVNLIPFNEHEGAAFKRPDDAAIERFKQILHDRQYTVMTRQSKGADISAACGQLAA 362
Query: 368 LSKR 371
K+
Sbjct: 363 DIKK 366
>gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
Length = 365
Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 184/365 (50%), Gaps = 27/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + M + E + + R Q+ +WIY + + DF+ M+++S+ +R L
Sbjct: 25 KRNAFEMTLADWERFVQE---ELDMPRYTADQLCQWIYKKKVFDFRAMTNLSKALRERLP 81
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I P++ + + DGTRK+L R +E+V + + T C+SSQVGC
Sbjct: 82 ELLEIRLPKLAKRQTAADGTRKYLWRL-----DDGEYVESVLMDHGNHYTACISSQVGCP 136
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC TG Q RNL+A EI+ S + G I+N+V M
Sbjct: 137 LRCEFCATGQQGFKRNLSAGEIVSHFAAMESDV-----------------GHDINNVVFM 179
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N++NV K++ + + S R +T+STSG I R+ +E + L +SLH
Sbjct: 180 GMGEPLLNYENVVKAVRMFLEPKMRGLSVRHVTISTSGIPEGIRRLADEGLDIYLCLSLH 239
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++P+N ++PL + A Y R+T EYVMLK +ND+P A L
Sbjct: 240 APNNELRSRIMPVNERFPLGAVFSAL-EYWQKKTGVRLTIEYVMLKNVNDTPDCAYELAT 298
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ + +NLIP+NP G ++ I F + +K +R G DI AACGQ
Sbjct: 299 LFSNLQVYVNLIPYNPVAGTQFARPSASRIAPFMKILKGLNVECEVRKEHGADIDAACGQ 358
Query: 365 LKSLS 369
L+ +
Sbjct: 359 LRGKT 363
>gi|170288910|ref|YP_001739148.1| radical SAM protein [Thermotoga sp. RQ2]
gi|205829920|sp|B1LAW7|RLMN_THESQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|170176413|gb|ACB09465.1| radical SAM enzyme, Cfr family [Thermotoga sp. RQ2]
Length = 343
Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats.
Identities = 131/369 (35%), Positives = 202/369 (54%), Gaps = 30/369 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + EEL + +G+ R R QI W++ + + +F M+++S++ R LL +
Sbjct: 2 KNLLDLSYEELVAEVTSLGLE----RYRADQILDWVFNKKVNNFDEMTNLSKQHRALLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HFSI + +++D+K+S DGT K+L IE+V + R T C+S+QVGC
Sbjct: 58 HFSIPFLKLLDKKVSRIDGTTKFLWELE-----DGNTIESVMLFHPDRITACISTQVGCP 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG VRNLT EI+ Q+L +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMER-----------------EEKKKIGNVVYM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N++N KS+ I + + RRIT+ST G I ++ EE V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N R+ LVP+N+KY +E +++A + Y + R+T EYV+++GIND DA L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQRKT-GNRVTIEYVLIRGINDEISDAKKLAE 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
ILK + +NLIP NP + ++ ++ F + +G + IR +G DI AACGQ
Sbjct: 275 ILKNMKIFVNLIPVNPTAE-DLKKPSRERLLAFKRILLENGIEAEIRREKGSDIEAACGQ 333
Query: 365 LKSLSKRIP 373
L+ +
Sbjct: 334 LRLKRIKST 342
>gi|325297954|ref|YP_004257871.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
salanitronis DSM 18170]
gi|324317507|gb|ADY35398.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
salanitronis DSM 18170]
Length = 348
Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats.
Identities = 127/376 (33%), Positives = 195/376 (51%), Gaps = 29/376 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G +EL +A+ ++G+P QI +W+Y + + M+++S R LL
Sbjct: 2 KTALLGKTLDELNDAVKELGMPA----FSARQIAQWLYGKKVSSIDEMTNLSLRNRELLK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+H+ + V S DGT K+L R P +E+VYIP+ R TLCVSSQVGC
Sbjct: 58 EHYEVGAALPVHAMRSADGTVKYLFRTP-----EGNFVESVYIPDGERATLCVSSQVGCK 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q +LT +IL Q+ ++N+V M
Sbjct: 113 MNCKFCMTGKQGYAGSLTVTQILNQIYSI-------------------PERDSLTNVVFM 153
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP N D V ++L I + G ++S +RIT+ST G + R E LA+SLH+
Sbjct: 154 GMGEPFDNLDAVLRALEILTSDYGYAWSPKRITVSTVGLRRGLERFLAESDCHLAVSLHS 213
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P R +P+ +++ R+Y S RR++FEY++ G+NDS A L+K+
Sbjct: 214 PFPSQRAELMPAERAFPITEIVNVLRNY-DFSKQRRLSFEYILFGGVNDSLVYAKELVKL 272
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ +INLI F+ PG + +D + + F + + + G + IR RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLQGADMETMTAFRDYLTKHGIFATIRASRGEDIFAACGML 332
Query: 366 KSLSKRIPKVPRQEMQ 381
+ ++ K Q
Sbjct: 333 STAEQQAEKERNLVKQ 348
>gi|294631675|ref|ZP_06710235.1| cfr family radical SAM enzyme [Streptomyces sp. e14]
gi|292835008|gb|EFF93357.1| cfr family radical SAM enzyme [Streptomyces sp. e14]
Length = 368
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 178/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R D + +DI R L +
Sbjct: 20 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSREKLRE 75
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + TRK L R +E+V + R T+C+SSQ GC
Sbjct: 76 ALLPELMSVVRHLSTDAGTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ + GL S+R +T+ST G VP I R +E LAIS
Sbjct: 182 GMGEPLANYKRVVGAIRALTDPEPDGLGLSQRGVTVSTVGLVPAIHRFSDEGFKCRLAIS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKS-GRRLSIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P +N IP NP PG ++ S +D F E I G IR RG +I AC
Sbjct: 301 GRLLKGRPVHVNCIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAATER 368
>gi|328953509|ref|YP_004370843.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca
acetoxidans DSM 11109]
gi|328453833|gb|AEB09662.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca
acetoxidans DSM 11109]
Length = 350
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 152/365 (41%), Positives = 213/365 (58%), Gaps = 26/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L + + + E+ ++ G R Q+ KW++ +G +F M+DI +EVRHLL +
Sbjct: 5 INLKELTQTDFEQLMVSWG----QAPFRARQVQKWLF-KGATEFNAMTDIGKEVRHLLQE 59
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I ++ + S DG+ K+ IE+V IPE TLC+SSQVGC+
Sbjct: 60 KSYISQLALLARRRSADGSEKFSFGLS-----DGEVIESVLIPENDHYTLCLSSQVGCAQ 114
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG + L RNL+ EI+ QVL ARSL+G ISN+V MG
Sbjct: 115 GCRFCLTGRRGLTRNLSPAEIINQVLAARSLVGKRQA---------------ISNLVFMG 159
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL NF N+ K+L+I GL+FS RR+T+ST G P I +G I V LA+SL+A
Sbjct: 160 MGEPLDNFANLVKALTIILAPWGLNFSYRRVTVSTVGLAPLIPALGHAIRVNLAVSLNAP 219
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ LR+ L+P+NRKYPL +I+ACR +P L RRITF YV+L+GIND+P A L ++L
Sbjct: 220 NDALRSQLMPVNRKYPLAQIIEACRAFP-LPPHRRITFCYVLLQGINDTPSHARELSRLL 278
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+G AKINLIPFNP + + ++ F + + + Y++ IR RG DI AACGQL
Sbjct: 279 QGFRAKINLIPFNPDSCLPFKRPTPEAVLAFQDILIQKHYTTLIRESRGADISAACGQLA 338
Query: 367 SLSKR 371
+R
Sbjct: 339 GEVQR 343
>gi|313894907|ref|ZP_07828467.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
gi|312976588|gb|EFR42043.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137
str. F0430]
Length = 346
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 126/363 (34%), Positives = 191/363 (52%), Gaps = 26/363 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ GM EEL AL GIP R R +QI + IY RG F ++ + + +R L ++
Sbjct: 2 NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57
Query: 68 FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F+I P +V+ + T K L F ETV + ++C+S+Q GC++
Sbjct: 58 FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + LVRNLT EI Q + L G ++ IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIGIADFLRQ--------------EGARVDTIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL N+DNV +L + + L R +TLSTSG VP I R+ +E I + LAISLHA
Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR+ ++P+NR+YPL ++ A RHY + R+T+EY++++ +ND R+A L +
Sbjct: 219 PTDELRSRIMPVNRRYPLADVLRAARHYAARTKR-RVTYEYILIRDVNDGVREAEQLAAL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+ A +NLIP NP I F ++ ++ +R G DI AACGQL
Sbjct: 278 LRDRLASVNLIPINPVAERSLHRPSSNAIRRFQRVLEERHITATLRREMGTDIRAACGQL 337
Query: 366 KSL 368
++
Sbjct: 338 RNR 340
>gi|297617050|ref|YP_003702209.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM
12680]
gi|297144887|gb|ADI01644.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM
12680]
Length = 371
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 135/365 (36%), Positives = 204/365 (55%), Gaps = 13/365 (3%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ LIGM + +LE + +G R+ Q+++W+Y + +F+ M+D+ +++R +
Sbjct: 2 KKELIGMTKTDLESMVKSLGGEA----FRSRQLYRWLYKNLVFEFENMTDLPRDLRDRVK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q SI P + E+IS DGT K LL V I + R TLC+SSQVGC
Sbjct: 58 QVASITLPVVERERISRDGTVKVLLGLQDGQHVEMVMIPQTRA-GRHRYTLCISSQVGCP 116
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG VRNL EI QVLL L + E +++N+V M
Sbjct: 117 IGCPFCATGRSGFVRNLAVNEITGQVLLGLLRLRNSNTFETQGSAT------RLTNVVFM 170
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEP N+ V K + + +D GL+ +R IT+ST+G V I R+ +E V LA+SLH
Sbjct: 171 GMGEPFLNYSAVMKCIRLMNDPDGLNIGQRHITVSTAGEVRGIRRLAQEGLQVTLAVSLH 230
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ +++R+ LVP+NRKYPL L +A R Y G++ R+T EYV+L+G+N S +D +LI
Sbjct: 231 SARDEVRDWLVPLNRKYPLSELEEALRFYCGVTKR-RVTLEYVLLEGVNTSRQDVASLID 289
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ + +NLIP+N E+ ++ F + +K +G +S +R RG DI ACGQ
Sbjct: 290 FARPLLCNVNLIPYNQIEKAEFRRPSPSTVLRFQQWLKEAGVNSVVREERGGDIEGACGQ 349
Query: 365 LKSLS 369
L++
Sbjct: 350 LRARV 354
>gi|225856442|ref|YP_002737953.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae P1031]
gi|254807219|sp|C1CJL5|RLMN_STRZP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|225724466|gb|ACO20318.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae P1031]
Length = 361
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 206/375 (54%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELP-----DGMLIETVLMCQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + +IS+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+S SG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL + + +
Sbjct: 340 CGQLLFNTMKRDRQK 354
>gi|320530185|ref|ZP_08031255.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399]
gi|320137618|gb|EFW29530.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399]
Length = 346
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 128/363 (35%), Positives = 192/363 (52%), Gaps = 26/363 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ GM EEL AL GIP R R +QI + IY RG F ++ + + +R L ++
Sbjct: 2 NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57
Query: 68 FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F+I P +V+ + T K L F ETV + ++C+S+Q GC++
Sbjct: 58 FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + LVRNLT EI Q + L G ++ IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIGIADFLRQ--------------EGARVDTIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL N+DNV +L + + L R +TLSTSG VP I R+ +E I + L+ISLHA
Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLSISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR+ ++P+NR+YPL ++ A RHY + RRIT+EY++++ +ND R A L +
Sbjct: 219 PTDELRSRIMPVNRRYPLADVMRAARHY-AVRTKRRITYEYILIRDVNDGVRAAEQLAAL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G A +NLIP NP I F ++ ++ +R G DI AACGQL
Sbjct: 278 LRGRLASVNLIPINPVAERNLHRPSSNVIRRFQRTLEERHITATLRREMGTDIQAACGQL 337
Query: 366 KSL 368
++
Sbjct: 338 RNR 340
>gi|148985883|ref|ZP_01818977.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae
SP3-BS71]
gi|147922029|gb|EDK73153.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae
SP3-BS71]
gi|301799783|emb|CBW32352.1| Radical SAM protein [Streptococcus pneumoniae OXC141]
Length = 361
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 120/375 (32%), Positives = 207/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IE V + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIEIVLMCQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++++IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVNHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+ + + +
Sbjct: 340 CGQLRFNTMKRDRQK 354
>gi|326790877|ref|YP_004308698.1| radical SAM protein [Clostridium lentocellum DSM 5427]
gi|326541641|gb|ADZ83500.1| radical SAM enzyme, Cfr family [Clostridium lentocellum DSM 5427]
Length = 345
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 185/367 (50%), Gaps = 29/367 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
++ ELEE +L G + R Q+++W + + + D+ M+++ ++R L +++
Sbjct: 4 ILNHTIAELEEIILAYG----ESKFRAKQLFEWFHKKMVWDYDEMNNLPLKLRDKLKENY 59
Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I IV++ S DGT K+L IE+V + K ++C+SSQVGC +
Sbjct: 60 PIQSLRIVEKLCSEIDGTIKYLFELSDS-----HIIESVLMRYKHGNSVCISSQVGCRMG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC + + VRNL E++ Q+ ++SNIV+MG
Sbjct: 115 CKFCASTVEGRVRNLLPAEMVGQIYAISK-----------------DTNERVSNIVIMGS 157
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL + + + + G + +R IT+ST G VP I + EE + LA+SLHA
Sbjct: 158 GEPLEELGVTLRFVELINHPSGQNIGQRHITVSTCGLVPEIKALAEEKLQINLALSLHAT 217
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++ R ++PI RKY LE ++ AC ++ +N R+TFEY +++G ND DA L +L
Sbjct: 218 TDERRQAIMPIARKYSLEEVLAACHYFIEKTNR-RVTFEYALIEGENDKEEDARRLGGLL 276
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KG+ +NLIP N Y S I F +++ G + +R G DI AACGQL+
Sbjct: 277 KGMLCHVNLIPVNQIDERSYKSSKASSIERFKGVLEQYGVPTTLRRTLGADIDAACGQLR 336
Query: 367 SLSKRIP 373
+
Sbjct: 337 RRYLKKR 343
>gi|289422335|ref|ZP_06424185.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius
653-L]
gi|289157280|gb|EFD05895.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius
653-L]
Length = 352
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 129/379 (34%), Positives = 198/379 (52%), Gaps = 30/379 (7%)
Query: 1 MN--FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
MN + K L + EE+ E +L +G + R +Q++ W+Y + IRDF M ++ +
Sbjct: 1 MNEGKIGKVVLKNLTEEEMVEFILSLG----EKKFRAAQVYSWVY-KNIRDFDEMKNVPK 55
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
+R L + I +I + S K L IETV + SR T+CV
Sbjct: 56 SLRDKLREKSIIGNLDIELKLESKIDNTKKYLFLLN----DGNIIETVAMDYDSRLTVCV 111
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
S+QVGC + C+FC + L R+L A EIL Q++ + L G++
Sbjct: 112 SNQVGCRMGCNFCASTIGGLSRHLEAWEILDQIMKVQEDL-----------------GKR 154
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
+SNIVMMG GEPL NFDN + L + ++ GL+ R ITLS G V I + + +
Sbjct: 155 VSNIVMMGSGEPLDNFDNSMRFLKLVNEKNGLNIGNRHITLSRCGLVDRILELADMQIPI 214
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLH+ ++ R ++PI +KY ++ L+DACR+Y +N R+TFEY ++K N++ R
Sbjct: 215 NLAISLHSPYDEERKEIMPIAKKYTIKELMDACRYYISKTNR-RVTFEYALIKDKNNTDR 273
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
+A L+++L+G+ +NLIP NP +Y + + I F + ++ IR G D
Sbjct: 274 EAKKLVELLRGMLCHVNLIPINPIAERDYEKPNIEYINKFKNYLDKNKIPVSIRNSMGSD 333
Query: 358 ILAACGQLKSLSKRIPKVP 376
I ACGQL+ K K
Sbjct: 334 ISGACGQLRRDYKGTSKEE 352
>gi|262199015|ref|YP_003270224.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
gi|262082362|gb|ACY18331.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
Length = 378
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 147/367 (40%), Positives = 212/367 (57%), Gaps = 23/367 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L + E L++G P R R QIW+W++ G+ + M+++ + +R LL
Sbjct: 17 RIDLRTLDLAETVALALELGQP----RYRGEQIWRWVHGAGVTRLEDMANLPRTLRELLA 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ ++ + + S DGTRK LR IETV IP+ + T C+SSQVGC+
Sbjct: 73 ERTTLGTLRVDAAQTSRDGTRKLRLRTR-----DGRAIETVLIPDGDKLTQCISSQVGCA 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T L R+L EI+ QV R+LL + R+I+N+V M
Sbjct: 128 LDCDFCATAKLGLTRHLDPGEIVDQVYRGRALLAEV------------EPERRITNLVYM 175
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N+ NV KSL + + +G + S+RRIT+ST G VP I ++G E LAISL+
Sbjct: 176 GMGEPLHNYANVVKSLRLLTSELGANLSQRRITVSTVGQVPGIEKLGREDVRPNLAISLN 235
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A S+++R+ ++P+NRK+ + L+ A R YP L RR+TFEYV+L G+NDS DA L +
Sbjct: 236 ASSDEIRDRIMPVNRKWNIARLLQAVRDYP-LERRRRVTFEYVLLAGVNDSMADAARLSR 294
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+GIP K+N+IP+NP PG Y + F KR G + +RTPRG DI AACGQ
Sbjct: 295 LLRGIPCKLNIIPWNPHPGAPYQRPSAHAVEAFQNEAKRLGLPTYLRTPRGDDIDAACGQ 354
Query: 365 LKSLSKR 371
L + ++
Sbjct: 355 LAARVEQ 361
>gi|330466309|ref|YP_004404052.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora
maris AB-18-032]
gi|328809280|gb|AEB43452.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora
maris AB-18-032]
Length = 383
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 120/372 (32%), Positives = 179/372 (48%), Gaps = 23/372 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ + L + + + +G P R QI + R +RD M+D+ R
Sbjct: 20 SMPPQHLADLDLAGRKALVTGLGEPA----FRARQISTHYFGRLVRDPAQMTDLPAASRA 75
Query: 63 LLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L V E D TRK L R +E+V + R T+C+SSQ
Sbjct: 76 RLADQLLPRLLNPVRELACDDGATRKALWRLH-----DGALVESVLMGYPDRVTVCISSQ 130
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C FC TG L RNL+ EI+ Q + + ++S+
Sbjct: 131 AGCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVVGSPARLSH 181
Query: 182 IVMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
+V MGMGEPL N++ V ++ A GL S+R IT+ST G VP I R+ E V
Sbjct: 182 VVFMGMGEPLANYNRVVAAIRRLVAPAPEGLGLSQRHITVSTVGLVPAIHRLASEDLSVT 241
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA ++LR+ LVP+N+++ + ++DA Y + RR++ EY M+K +ND P
Sbjct: 242 LALSLHAPDDELRDELVPVNQRWKVSEVLDAAWAYAART-GRRVSIEYAMIKDVNDQPWR 300
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L ++L G A +NLIP NP PG + S + F ++ +G S+ +R RG +I
Sbjct: 301 ADLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREI 360
Query: 359 LAACGQLKSLSK 370
ACGQL +
Sbjct: 361 DGACGQLAAAED 372
>gi|256390734|ref|YP_003112298.1| ribosomal RNA large subunit methyltransferase N [Catenulispora
acidiphila DSM 44928]
gi|256356960|gb|ACU70457.1| radical SAM enzyme, Cfr family [Catenulispora acidiphila DSM 44928]
Length = 395
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 118/368 (32%), Positives = 183/368 (49%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E ++AL ++G H R +Q+ + + D SD+ R L
Sbjct: 47 RHLADLTSAERKKALSELG----HQGFRAAQVSQHYFGHLADDPAQWSDVPAAKREELAG 102
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + E+ + + TRK L R +E+V + + R T+CVSSQ GC
Sbjct: 103 ILTPRLLTPIREQTADNGTTRKTLWRL-----FDGATVESVLMRYRDRTTMCVSSQAGCG 157
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EI+ QV+ + +P ++SN+V M
Sbjct: 158 MNCPFCATGQAGLTRNMSTGEIVEQVVAGARTMA---------RGEVPGGPGRVSNVVFM 208
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ ++ GL S R IT+ST G VP I ++ E I V LA+S
Sbjct: 209 GMGEPLANYKAVIGAVRRLTEPVPDGLGLSARHITVSTVGLVPAIEKLTAEAIPVTLAVS 268
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y ++ R++ EY ++K IND A L
Sbjct: 269 LHAPDDELRDTLVPVNTRWNVSEVLDAAWRYASVTKR-RVSIEYALIKDINDQAWRADRL 327
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L+ +NLIP NP PG ++ S +D F ++ G +R RG DI AC
Sbjct: 328 GRMLRNKLVHVNLIPLNPTPGSKWTASRPQDEAEFVRRLQEWGVPVTVRDTRGRDIDGAC 387
Query: 363 GQLKSLSK 370
GQL + K
Sbjct: 388 GQLAAAVK 395
>gi|78045218|ref|YP_360312.1| radical SAM protein [Carboxydothermus hydrogenoformans Z-2901]
gi|123770585|sp|Q3AC22|RLMN_CARHZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|77997333|gb|ABB16232.1| radical SAM enzyme, Cfr family [Carboxydothermus hydrogenoformans
Z-2901]
Length = 342
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 29/363 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + EE+ L + R QI +WI+ G DF M+++ +R L ++F
Sbjct: 4 FLDLNSEEIVAWLKEN----NEKSFRLKQINEWIFKHGELDFNKMTNLPVRLREKLKENF 59
Query: 69 SIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ +I+ K S + K+LL+ IE V + + T+C+S+QVGC +
Sbjct: 60 LLPSLKIIHSKKSRDGQSIKYLLKLKDNLG-----IEAVLLKYRYGNTVCLSTQVGCKMG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG RNLTA E++ Q+L+ + S KI+ +V+MG
Sbjct: 115 CKFCATGLGGFSRNLTAGEMIEQILVLK-----------------ASSSEKITRVVLMGS 157
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL NF V K + ++ L+ S R+IT+ST G VP I + EE V LAISLHA
Sbjct: 158 GEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAP 217
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LRN L+PIN+++ L L+DA ++ + RR++FEY +++ +ND+ AL L ++L
Sbjct: 218 DDALRNELIPINKRWGLAELLDAAWYFIDKT-GRRVSFEYALIENVNDTVEHALKLAQLL 276
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ +NLIP+N + + I F E +KR+G +R G +I ACGQLK
Sbjct: 277 QRKLVHVNLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGACGQLK 336
Query: 367 SLS 369
+
Sbjct: 337 AKY 339
>gi|300866402|ref|ZP_07111100.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp.
PCC 6506]
gi|300335612|emb|CBN56260.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp.
PCC 6506]
Length = 349
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 125/360 (34%), Positives = 182/360 (50%), Gaps = 31/360 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EL + + G P R Q+ +WIY +G+R +S S++ R L +
Sbjct: 17 LLGANLAELTAWVQEQGQPA----YRAKQLHQWIYEKGVRSLSEISVFSKQWRESLA-NV 71
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I ++ D T K+LL+ +E V IP + R T+CVSSQVGC + C
Sbjct: 72 PIGRSIIHHRSVAPDQTVKYLLKL-----ADGQIVEAVGIPTEKRLTVCVSSQVGCPMAC 126
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG R+L EI+ QVL + R++S+IV MGMG
Sbjct: 127 DFCATGKGGFQRHLAKHEIVDQVLTVQEDFK-----------------RRVSHIVFMGMG 169
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N +NV ++ ++ +G+ +R IT+ST G I + E V LA+SLH +
Sbjct: 170 EPLLNLENVVAAVKCLNEDVGIG--QRNITISTVGIRDRIRLLAEHHLQVTLAVSLHGSN 227
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P R Y + L++ CR Y ++ RR++ EY++L G+ND P A L L+
Sbjct: 228 QKLREKLIPSARNYRFDELMEECREYVKIT-GRRLSVEYILLAGVNDLPEHAAELADNLR 286
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G +NLIP+NP +Y Q I F E +K + +R RGLD AACGQL++
Sbjct: 287 GFQCHVNLIPYNPIAEADYERPSQYRIKVFVEALKARHIAVSVRYSRGLDADAACGQLRA 346
>gi|320161065|ref|YP_004174289.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1]
gi|319994918|dbj|BAJ63689.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1]
Length = 357
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 117/374 (31%), Positives = 186/374 (49%), Gaps = 26/374 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ ++ + E+L+ L+ G P R Q+W+ +Y + + + + +
Sbjct: 5 ITMSERPLIYDFDLEDLQNILVAWGEP----PFRAKQVWEGLYHSFWNSPEEFTHLPKTL 60
Query: 61 RHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R+ L + FS + + S T K L P IETV + K R TLC+S
Sbjct: 61 RNRLAEEFSFSHLSPIQTYASEDGETSKTLFHLP-----DNRSIETVLMRYKERRTLCIS 115
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+Q GC++ C FC TG R+L++ EI+ QV+ LL +
Sbjct: 116 TQSGCAMGCVFCATGQMGFGRHLSSGEIVEQVIYFARLLRKTNEVVTNVVV--------- 166
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
MGMGEP N++N K+++ + G + RR T+ST G VP I R +E +
Sbjct: 167 -----MGMGEPFHNYENTLKAIARLNHPEGFNLGARRFTISTVGLVPMIERFAQENHQIN 221
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLHA ++ LR+ L+P+N+KYP+ L+ A R Y + RR+TFE+ +++ INDSP
Sbjct: 222 LAISLHAANDTLRSSLLPVNKKYPISDLMRAVRQYVAQT-GRRVTFEWALIRDINDSPEH 280
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L +LKG+ +N+IP NP + ++ F ++++G + IR RG+DI
Sbjct: 281 ARELASLLKGLLCHVNVIPLNPTQKYHGKATTRERAEAFCSILQKAGIPATIRLRRGIDI 340
Query: 359 LAACGQLKSLSKRI 372
A CGQL + +
Sbjct: 341 QAGCGQLATQHTQT 354
>gi|268316491|ref|YP_003290210.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
gi|262334025|gb|ACY47822.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
Length = 364
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 179/347 (51%), Gaps = 19/347 (5%)
Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
R R Q++KWIY +G + M+D+ + R L + I E V + + D T K
Sbjct: 25 GEPRYRGRQLFKWIYGKGATSVEQMTDLPRAFRAELARRARITRLEPVRQLTAGDQTVKV 84
Query: 89 LLRFPARCIGGPVEIETV--YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
L R P+ V I R T+CVSSQVGC++ C+FC TG +NLTA E
Sbjct: 85 LFRLPSGRHVESVLIPDFDEETGRVRRLTVCVSSQVGCAMGCAFCATGLMGFQQNLTAGE 144
Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
I QV L + GR+I+N+V MGMGEPL N+D V +S+++ +D
Sbjct: 145 IYDQVWQLNRLAEE-------------RFGRRITNVVYMGMGEPLLNYDAVLRSVALLTD 191
Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP--INRKYPL 263
GL S RRIT+ST G I ++ ++ + LA+SLHA +N R+ ++P N + L
Sbjct: 192 RDGLGLSPRRITVSTVGLARRIRQLADDGVRFRLAVSLHAPTNAQRSAIMPVNRNEQTDL 251
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
+ LI+A R Y + IT+EY + +G ND P DA L + + P K+NLI +NP G
Sbjct: 252 DDLIEAIR-YFEARTGQTITYEYCLFEGFNDRPEDAHRLADLTEQAPGKVNLILYNPVEG 310
Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
+ ++ + F + G + +R RG DI AACGQL +
Sbjct: 311 LPFRRPSEERLQAFIRVLVDRGVTVTVRRSRGQDINAACGQLAVREQ 357
>gi|196228869|ref|ZP_03127735.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
gi|196227150|gb|EDY21654.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
Length = 359
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 191/365 (52%), Gaps = 26/365 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + +E+ E L +G P R Q+ +WIY + ++ F MSD+ +R L
Sbjct: 10 IKSLTLDEVSERLRTLGQPG----YRAKQVVQWIYGKRVKSFAEMSDLPAGLRQQLAAEL 65
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET---VYIPEKSRGTLCVSSQVGCS 125
S E V S D T K+L R + V I +Y R T+C+S+QVGC+
Sbjct: 66 SFSGLEPVRTLGSKDTTLKYLFRLDDGALIESVLIPASPALYGEASDRRTICISTQVGCA 125
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
C FC +G RNL EI+ QVL L G KI+NIV M
Sbjct: 126 YGCKFCASGLDGWSRNLQPGEIVDQVLRVEEL-----------------SGEKINNIVFM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEP+ NF N+ K+++I + G+ R IT+STSG P I + ++ V LAISLH
Sbjct: 169 GMGEPMANFTNLMKAITIINAPWGIGLGARHITISTSGLAPQIKLLADQPLQVRLAISLH 228
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+N++R ++P+NRKYPLE+L++AC +Y +TFEY++++ +ND P DA L+K
Sbjct: 229 GATNEVREQIMPVNRKYPLEVLLEACAYYTQRKKQW-LTFEYILIEEVNDRPEDAAALVK 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ + + AK+N IP+N G ++ + F ++ + IR +G DI AACGQ
Sbjct: 288 VARQVKAKVNCIPYNKVEGLDWTRPSEARQDAFMAVLEAGRIPATIRREKGHDIAAACGQ 347
Query: 365 LKSLS 369
L+ +
Sbjct: 348 LRRQT 352
>gi|237755450|ref|ZP_04584074.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692382|gb|EEP61366.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 354
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 137/373 (36%), Positives = 211/373 (56%), Gaps = 29/373 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L +ELE +++ G + R QI KW+Y + + M+D+S+++R+ L
Sbjct: 2 KVNLKNFNLKELENFVVEKGW----QKFRAKQIAKWLYKKKASSYDEMTDLSKDIRNYLK 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ E+V + S DG+ K+L + IETV I EK+ TLCVS+QVGC
Sbjct: 58 ENTEFNALELVMYQQSKIDGSIKFLWKLK-----DGNTIETVLINEKNHKTLCVSTQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC+T L+RNL EI+ Q + + LGD +ISNIV
Sbjct: 113 AVGCKFCFTTKDGLIRNLETAEIVEQYINVQRFLGD-------------EEENRISNIVY 159
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---MLAI 241
MGMGEPL N++NVKKS+ I + + S R+IT+S+SG + I R+ E+ LA+
Sbjct: 160 MGMGEPLANYENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAV 219
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL+A + D R L+PI++ L+ L+D R P L RIT EYV++KG+NDS +DA
Sbjct: 220 SLNASNQDQRAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLIKGVNDSEQDAKR 278
Query: 302 LIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ +LK K+NLIPFNP+P E+ +++ ++ F + + + ++ IR +G DI
Sbjct: 279 LVNLLKKDKHRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDID 338
Query: 360 AACGQLKSLSKRI 372
AACGQL+ + +
Sbjct: 339 AACGQLRKKAVDL 351
>gi|149021632|ref|ZP_01835663.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae
SP23-BS72]
gi|147930093|gb|EDK81079.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae
SP23-BS72]
Length = 361
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 120/375 (32%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMCQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++++IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVNHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + + LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQINLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A++N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 ALNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+ + + +
Sbjct: 340 CGQLRFNTMKRDRQK 354
>gi|160933496|ref|ZP_02080884.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753]
gi|156867373|gb|EDO60745.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753]
Length = 359
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 132/369 (35%), Positives = 203/369 (55%), Gaps = 30/369 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+ + M +EL + G P + QI++W++ RG+ F+ M+D+S+ VR L
Sbjct: 7 QKKDIKSMTLDELRADMKIQGQP----SYKALQIYRWLH-RGVSSFEEMTDLSKIVRQFL 61
Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + I + ++ +S D T K+L F +E V + + ++C+S+QVG
Sbjct: 62 TEKYYISVARVENKLVSDYDNTIKYLFSF-----ADGQCVEAVLMEYQHGRSICISTQVG 116
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C+FC TG RNLTA E+L QV A+ G +ISNIV
Sbjct: 117 CKMGCTFCATGLGGFQRNLTASEMLSQVQAAQK-----------------DAGVRISNIV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MGMGEPL N++ V + L + S G++ R I+LST G V I + EE + L++S
Sbjct: 160 LMGMGEPLDNYNQVIRFLRLVSSQEGMNLGMRHISLSTCGLVDRIYDLAEENLQLTLSVS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N +R+ +P+NRKYP+E L+ ACR+Y G + RRI+FEY M+ G+NDS A L
Sbjct: 220 LHAPNNAIRSRTMPVNRKYPIEELLKACRYYAGRT-GRRISFEYAMIDGVNDSDGCAKEL 278
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
LKG+ +NLIP NP Y S ++ F ++R+G ++ +R G DI A+C
Sbjct: 279 AARLKGMLCHVNLIPVNPVREAGYQKSGRERQQAFIRILERAGITATVRRTLGADINASC 338
Query: 363 GQLKSLSKR 371
GQL+ +
Sbjct: 339 GQLRRKHLK 347
>gi|159025948|emb|CAO86242.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 337
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 126/360 (35%), Positives = 186/360 (51%), Gaps = 31/360 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+ EEL + + G P R Q+ +W+Y +G+ +S QE R L +
Sbjct: 3 LLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKLAD-Y 57
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I ++ D TRK+LL+ + IE V IP + R T+CVSSQVGC + C
Sbjct: 58 PIGRSLIHYRSVAPDRTRKYLLKL-----ADGLIIEAVGIPSEKRLTVCVSSQVGCPMAC 112
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNL A EI+ QVL + +++S++V MGMG
Sbjct: 113 DFCATGKGGFTRNLKAYEIVDQVLTVQEDF-----------------QQRVSHVVFMGMG 155
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N V ++ + +G+ +R +T+ST G I ++ E V A+SLHA +
Sbjct: 156 EPLLNIPEVVTAIHSLNQDVGIG--QRCLTISTVGLPHKIKQLAEHNLQVTFAVSLHASN 213
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+R L+P YPL LI C+ Y ++ RR+TFEY++L G+ND P A L+K++K
Sbjct: 214 QQVRAKLIPSADHYPLTNLIQDCQEYVQIT-GRRVTFEYILLAGVNDLPEHARELVKLVK 272
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y D+K I F +++ + +R RGL AACGQL+S
Sbjct: 273 GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLAADAACGQLRS 332
>gi|288554554|ref|YP_003426489.1| ribosomal RNA large subunit methyltransferase N [Bacillus
pseudofirmus OF4]
gi|288545714|gb|ADC49597.1| ribosomal RNA methyltransferase N, heat shock prot [Bacillus
pseudofirmus OF4]
Length = 360
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 128/367 (34%), Positives = 207/367 (56%), Gaps = 26/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ KES+ G+ ++L E L++ G H + R +Q+W W+Y + ++ F M++++++ L
Sbjct: 1 MHKESIYGLTMDQLTEWLMERG----HKKFRATQVWDWLYRKRVKSFDEMNNVNKDCLEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++F I ++ S DGT K+L + IETV + K ++CV++QVG
Sbjct: 57 LRENFVISTLTEHVKQESSDGTIKFLFKLY-----DGNLIETVLMKHKYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+L++ EI+ Q++ + L ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVEQIMNVQHHLD------------SVGKDERVSHIV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP NFDN+ L I D GL+ R IT+STSG I + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFDNMVDFLEIMKDHKGLAIGARHITVSTSGLADKIYEFADLKLQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ P+E L+ A +Y +N +IT EY++LKG+ND A L
Sbjct: 220 LHAPNNELRTKIMKINKAIPIEKLMKAIDYYLEKTNR-KITIEYILLKGVNDQREHAKEL 278
Query: 303 IKILKGIPA--KINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++ K +NLIP+NP Y S ++DI+ F + +K++G + +R G DI
Sbjct: 279 AEMFKDKRHLTYVNLIPYNPVDEHGQYQRSIKEDILGFYDELKKNGINCGVRLEHGTDID 338
Query: 360 AACGQLK 366
AACGQL+
Sbjct: 339 AACGQLR 345
>gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091617|sp|Q8K9P5|RLMN_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 363
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 156/366 (42%), Positives = 216/366 (59%), Gaps = 24/366 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L+ + R+E+E LL +G + T Q+ KWIY R +F MS++ +++R L
Sbjct: 13 DKINLLDLNRKEIEIFLLSLG----AKKFVTDQLMKWIYNRHCNNFNLMSNLKKDIRKKL 68
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N+ I ++EKIS DGT KW+ +IET+YIPEK R TLCVSSQ+GC
Sbjct: 69 NERSYIFASNFIEEKISYDGTVKWITSI------DKQKIETIYIPEKKRATLCVSSQIGC 122
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
SL C FC TG Q RNL EI+ Q+ A +L + I+NIV
Sbjct: 123 SLKCKFCATGQQGFNRNLKVSEIISQIWQANKILKE------------KKNNSTITNIVF 170
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRRITLSTSG VP + ++ ++I V LAISLH
Sbjct: 171 MGMGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKIDVSLAISLH 230
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
A ++ +RN ++PIN KY ++ +++ Y S+A R +T EYVML+GIND A L
Sbjct: 231 APNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEEL 290
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
ILK IP+KINLIP+N + ++CS + I F+ +++ G+++ IR RG DI AAC
Sbjct: 291 GNILKKIPSKINLIPWNFFKNANFICSSKNRINIFANILRKKGFNTTIRKNRGQDIGAAC 350
Query: 363 GQLKSL 368
GQL
Sbjct: 351 GQLTGD 356
>gi|302671345|ref|YP_003831305.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
gi|302395818|gb|ADL34723.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
Length = 352
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 116/375 (30%), Positives = 198/375 (52%), Gaps = 33/375 (8%)
Query: 1 MNFLK----KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56
M++++ K + + +EL + + G P R Q+++W++V+ RD+ M++I
Sbjct: 1 MSYIQGINGKIDIKSLTLDELTILIKEAGEPA----FRAKQLYEWMHVKLARDYDEMTNI 56
Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115
+ ++ + F + + + S D T+K+L IE+V++ K +
Sbjct: 57 PKSLKEKCREMFDFVSLKSELVQESKLDDTKKFLFALS-----DGNMIESVFMKYKFGVS 111
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C+SSQVGC + C FC + +VRNL E+L Q+ +
Sbjct: 112 VCISSQVGCRMGCKFCASTIDGVVRNLLPSEMLDQIYAISRI-----------------T 154
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
G K+ +V+MG GEPL N+DN+ + + + ++ GL+ S+R +T+ST G VPNI R+ ++
Sbjct: 155 GEKVGRVVVMGSGEPLDNYDNLLRFIDLLTNEDGLNMSQRNLTVSTCGIVPNILRLADKN 214
Query: 236 -GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ LA+SLHA +ND R L+PI KY + ++DACR Y + + +TFEY ++ G+ND
Sbjct: 215 LAINLALSLHASNNDKRKELMPIANKYEIHEVLDACRTYFDKTGRQ-LTFEYSLVAGVND 273
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
+ DA L +L G +NLIP NP ++ +D+ + F +++S + IR
Sbjct: 274 TDEDARELTDLLSGFNCVVNLIPVNPIKERDFKPTDRAGALGFKNKLEKSRINVTIRREM 333
Query: 355 GLDILAACGQLKSLS 369
G DI ACGQL+
Sbjct: 334 GRDIDGACGQLRRRH 348
>gi|239928666|ref|ZP_04685619.1| hypothetical protein SghaA1_10605 [Streptomyces ghanaensis ATCC
14672]
gi|291436989|ref|ZP_06576379.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291339884|gb|EFE66840.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 368
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 180/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ G R Q+ + + R D + +DI R L +
Sbjct: 20 RHLADLTPAERKEAVAAAG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSRARLRE 75
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + TRK L + +E+V + R T+C+SSQ GC
Sbjct: 76 ALLPELMTVVRHLSTDQGTTRKTLWKL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPTRLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LAIS
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAIS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGFAYAARS-GRRLSIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P +NLIP NP PG ++ S +D F E I G IR RG +I AC
Sbjct: 301 GRLLKGRPVHVNLIPLNPTPGSQWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAASER 368
>gi|307153286|ref|YP_003888670.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822]
gi|306983514|gb|ADN15395.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822]
Length = 350
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 122/362 (33%), Positives = 187/362 (51%), Gaps = 31/362 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G +EL E + + G P R Q+++W+Y +G R +S + R + +
Sbjct: 18 LLGKSLQELTEWVQEQGQPA----YRGKQLYQWLYEKGARSLSDISVFPKSWREEVKD-Y 72
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I +I I+ D TRK+LLR + IETV IP + R T+CVSSQVGC + C
Sbjct: 73 PIGRSQIHHRSIAPDKTRKYLLRLQ-----DGLIIETVGIPTEKRLTVCVSSQVGCPMDC 127
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNL EI+ QVL + R++S++V MGMG
Sbjct: 128 DFCATGKGGFTRNLAPHEIVDQVLTVQEDF-----------------QRRVSHVVFMGMG 170
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N V +++I + +G+ R +T+ST G I ++ V A+SLHA +
Sbjct: 171 EPLLNLKAVVSAVNILNQDVGIGM--RSLTISTVGLPAKIEQLARHQLQVTFAVSLHAPN 228
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P + YPL+ L++ C Y ++ R+TFEY++L G+ND P A L ++
Sbjct: 229 QALREQLIPSAKHYPLKNLLEDCHKYVEMTKR-RVTFEYILLAGVNDLPEQAQELAVQIR 287
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y + + I F +++ + +R RGL+ AACGQL++
Sbjct: 288 GFQSHVNLIPYNPISEADYKRPNSQRINAFLNILQQENIAVSVRYSRGLETDAACGQLRA 347
Query: 368 LS 369
Sbjct: 348 AK 349
>gi|182683687|ref|YP_001835434.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14]
gi|205829907|sp|B2INF0|RLMN_STRPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|182629021|gb|ACB89969.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14]
Length = 361
Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 120/375 (32%), Positives = 207/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + ++++IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVNHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+ P + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYTPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
GQL+S + + +
Sbjct: 340 YGQLRSNTMKRDRQK 354
>gi|225011596|ref|ZP_03702034.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A]
gi|225004099|gb|EEG42071.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A]
Length = 358
Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 128/364 (35%), Positives = 204/364 (56%), Gaps = 24/364 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + + +EEL+E + G P + Q+++W++ +G+ DF+ M+++S R+LL+
Sbjct: 14 KKDIRALSKEELQEFFVSQGAP----SFKGGQVYQWLWQKGVHDFELMTNLSLTHRNLLD 69
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HF I + I ++ S DGT K ++ + +E+V IP +R T CVSSQVGCS
Sbjct: 70 AHFEIKHINIDFQQRSTDGTIKNAVKLH-----DNLVVESVLIPTSTRTTACVSSQVGCS 124
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T K +RNL A+EI QV+ + R +SNIV M
Sbjct: 125 LDCTFCATAALKRMRNLNADEIYDQVVAM-------------DQQSKLYHQRPLSNIVFM 171
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N++NV ++ +D+ L S RRITLSTSG I ++ ++ LA+SLH
Sbjct: 172 GMGEPLMNYNNVLAAIEKITDTEALGMSPRRITLSTSGIPKLIRKMADDKVKFGLAVSLH 231
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ ++R ++P +K+PL LI++ ++ + + ITFEYV+ +G+ND D L+
Sbjct: 232 SARQEVRERIMPFAKKFPLTELIESLEYWYAYTKKQ-ITFEYVVWEGVNDLKEDIQALVG 290
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ + IP+K+N+I +NP G +Q I + + ++ S R RG+DI AACGQ
Sbjct: 291 LCRRIPSKVNIIQYNPIDGSSMKQGNQTVIDAYIAALTKARISVTYRRSRGVDIDAACGQ 350
Query: 365 LKSL 368
L +
Sbjct: 351 LANK 354
>gi|218246284|ref|YP_002371655.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
8801]
gi|254807168|sp|B7K4N4|RLMN_CYAP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|218166762|gb|ACK65499.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8801]
Length = 340
Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 131/363 (36%), Positives = 194/363 (53%), Gaps = 31/363 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G +EL + + K G P R Q+ +W+Y +G R +S + R L ++
Sbjct: 8 LLGKSLDELTQWVEKQGQPT----YRGKQLHQWLYEKGARSLDEISVFPKTWREKLI-NY 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I ++ D TRK+LL G + IETV IP R T+CVSSQVGC + C
Sbjct: 63 PIGRSTIDYRTVAPDATRKYLLCL-----GDGLIIETVGIPTAKRLTVCVSSQVGCPMAC 117
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG R+L A EI+ QVL + R++S++V MGMG
Sbjct: 118 DFCATGKGGYQRHLRAHEIVDQVLTVQEDF-----------------QRRVSHVVFMGMG 160
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N + V KS+ I + +G+ +R +T+ST G I ++ V LA+SLHA +
Sbjct: 161 EPLLNLEEVVKSVKILNQDIGIG--QRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P + Y L+ L+ CR Y ++ RRI+FEYV+L G+ND P A+ L +LK
Sbjct: 219 QPLRETLIPSAQHYTLKNLLADCREYVNIT-GRRISFEYVLLGGVNDLPEQAIELANLLK 277
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y +Q I TF + +++ + +R RGL+ AACGQL++
Sbjct: 278 GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLEANAACGQLRA 337
Query: 368 LSK 370
+
Sbjct: 338 SQR 340
>gi|111658342|ref|ZP_01409030.1| hypothetical protein SpneT_02000482 [Streptococcus pneumoniae
TIGR4]
Length = 349
Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 122/364 (33%), Positives = 204/364 (56%), Gaps = 26/364 (7%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN F + +
Sbjct: 1 MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+ S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G
Sbjct: 57 IVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
K R+L EI+ Q++L + + +IS+IV+MG+GEP N++N
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVMGIGEPFDNYNN 159
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
V +D G++ R IT+STSG I +E + V LA+SLHA +N+LR+ ++
Sbjct: 160 VLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIM 219
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKI 313
INR +P+E L A +Y +N R+TFEY+ML +ND AL L ++LK I + +
Sbjct: 220 KINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTELLKNIKKLSYV 278
Query: 314 NLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AACGQL+S + +
Sbjct: 279 NLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMKR 338
Query: 373 PKVP 376
+
Sbjct: 339 DRQK 342
>gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
Length = 388
Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 132/361 (36%), Positives = 187/361 (51%), Gaps = 13/361 (3%)
Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
E L G R QI+ WIY + + +F MS++ ++R L + I + E
Sbjct: 31 EWLAARG----EATFRAKQIYSWIYQQLVDNFAAMSNLPLKLRQRLEEEACIGPLVVRSE 86
Query: 79 KIS-CDGTRKWLLRFPARCIGGPVEIE-TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
S D TRK LL + V + +R T+CVSSQ GC+ C+FC TG
Sbjct: 87 VSSKDDRTRKILLELADGKLIESVLMLYPPLGESSARATICVSSQAGCAFGCTFCATGQM 146
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
R+L + EI+ QVL L P P I+NIV+MGMGEPL N+DN
Sbjct: 147 GFDRHLQSGEIIAQVLHFARELRATPWSAAGLPGSTP--IDHITNIVLMGMGEPLHNYDN 204
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
V ++L I + + G + R +T+ST G VP I ++ +E V LAISLHA +N+ R+ +
Sbjct: 205 VLQALRILNSAAGFNLGARHMTVSTVGLVPAIRKLSQEQLQVNLAISLHAPTNEARSQTM 264
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKI 313
P+NRKYPLE L+ AC+ Y + + +TFEYV+L G+ND+P A L ++L + A +
Sbjct: 265 PVNRKYPLEELLAACQDYIAATRRQ-VTFEYVLLAGVNDTPERAQQLAELLAPLKQFAHV 323
Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
N IP N Y I F + G S+ +R RG DI AACGQL++ +
Sbjct: 324 NCIPVNATS-AGYRPPGPDAIRAFRNILFERGISNSVRAERGDDIAAACGQLRTRFEDRR 382
Query: 374 K 374
K
Sbjct: 383 K 383
>gi|81300567|ref|YP_400775.1| ribosomal RNA large subunit methyltransferase N [Synechococcus
elongatus PCC 7942]
gi|123769224|sp|Q31MD1|RLMN_SYNE7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|81169448|gb|ABB57788.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 361
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 192/368 (52%), Gaps = 37/368 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G EL++ ++ G P R Q+++W+Y R I + +S + R L Q
Sbjct: 15 TPLLGRSLPELQDWVVAQGQP----SYRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-Q 69
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +IVD +S GT K+LLR IE V IP R T+CVSSQ+GC++
Sbjct: 70 AVPVGRSQIVDRSVSPSGTIKYLLRLH-----DGEIIEAVGIPSGDRLTVCVSSQLGCAM 124
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG R+L EI+ QVL + +++SNIV MG
Sbjct: 125 ACDFCATGKGGFRRHLAPHEIIDQVLTVQE-----------------DWQQRVSNIVFMG 167
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-------GVML 239
MGEPL N D V ++ + +G+ +R IT+ST G +I R+ E L
Sbjct: 168 MGEPLLNLDAVLAAIRCLNQDIGIG--QRGITVSTVGIPGHIRRLAETKRVGDRPLQFTL 225
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA + +R+ L+P +R YP+ L+ CR Y ++ RR+TFEY++L G+ND P A
Sbjct: 226 AVSLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQIT-GRRVTFEYILLAGLNDQPEQA 284
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L+G + +NLIP+NP EY + + F++ +++ + +R +GL
Sbjct: 285 EQLAQLLRGFQSHVNLIPYNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGAD 344
Query: 360 AACGQLKS 367
AACGQL++
Sbjct: 345 AACGQLRA 352
>gi|188997621|ref|YP_001931872.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932688|gb|ACD67318.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1]
Length = 354
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 136/373 (36%), Positives = 211/373 (56%), Gaps = 29/373 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L +ELE +++ G + R QI KW+Y + + + M+D+S+++R+ L
Sbjct: 2 KVNLKNFNLKELENFVVEKGW----QKFRAKQIAKWLYKKKVSSYDEMTDLSKDIRNYLK 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ E+V + S DG+ K+L + IETV I EK+ TLCVS+QVGC
Sbjct: 58 ENTEFNALELVMYQQSKIDGSIKFLWKLK-----DGNTIETVLINEKNHKTLCVSTQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC+T L+RNL EI+ Q + + LG +ISNIV
Sbjct: 113 AVGCKFCFTTKDGLIRNLETAEIVEQYINVQRFLG-------------MEEENRISNIVY 159
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---MLAI 241
MGMGEPL N++NVKKS+ I + + S R+IT+S+SG + I R+ E+ LA+
Sbjct: 160 MGMGEPLANYENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAV 219
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL+A + D R L+PI++ L+ L+D R P L RIT EYV++KG+NDS +DA
Sbjct: 220 SLNASNQDQRAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLMKGVNDSEQDAKR 278
Query: 302 LIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ +LK K+NLIPFNP+P E+ +++ ++ F + + + ++ IR +G DI
Sbjct: 279 LVNLLKKDKHRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDID 338
Query: 360 AACGQLKSLSKRI 372
AACGQL+ + +
Sbjct: 339 AACGQLRKKAVDL 351
>gi|160892219|ref|ZP_02073222.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492]
gi|156858697|gb|EDO52128.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492]
Length = 350
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 131/375 (34%), Positives = 197/375 (52%), Gaps = 29/375 (7%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N ++K L+G+ EL+ + +G+P QI W+Y + + MS++S + R
Sbjct: 3 NDMQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHR 58
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
LL + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQ
Sbjct: 59 ELLKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQ 113
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C FC TG Q NLT+ +I+ Q+ K++N
Sbjct: 114 VGCKMNCKFCMTGKQGFTANLTSNQIINQI-------------------SSLPERDKLTN 154
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+VMMGMGEPL N D V K+L I + S G ++S +R+TLS+ G + R E LAI
Sbjct: 155 VVMMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAI 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A
Sbjct: 215 SLHSPIPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLPYAKE 273
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+K+L+G+ +INLI F+ PG +D + + F + + G + IR+ RG DI AA
Sbjct: 274 LLKLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAA 333
Query: 362 CGQLKSLSKRIPKVP 376
CG L + + K
Sbjct: 334 CGMLSTAKQEENKEE 348
>gi|302554450|ref|ZP_07306792.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
viridochromogenes DSM 40736]
gi|302472068|gb|EFL35161.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
viridochromogenes DSM 40736]
Length = 368
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 181/368 (49%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ +G R Q+ + + R D + +DI R L +
Sbjct: 20 RHLADLTPAERKEAVAAVG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARGRLQE 75
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + TRK L R +E+V + R T+C+SSQ GC
Sbjct: 76 ALLPELMTVVRHLSTDQGTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V S+ +D G+ S+R IT+ST G VP I R +E LAIS
Sbjct: 182 GMGEPLANYNRVIGSIRRLTDPEPDGVGLSQRGITVSTVGLVPAIHRFADEGFKCRLAIS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGFEYSAKS-GRRLSIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P +NLIP NP PG ++ S +D F E I G IR RG +I AC
Sbjct: 301 GRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAATER 368
>gi|154250366|ref|YP_001411191.1| ribosomal RNA large subunit methyltransferase N [Fervidobacterium
nodosum Rt17-B1]
gi|205829758|sp|A7HNQ1|RLMN_FERNB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|154154302|gb|ABS61534.1| radical SAM enzyme, Cfr family [Fervidobacterium nodosum Rt17-B1]
Length = 348
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 133/374 (35%), Positives = 200/374 (53%), Gaps = 32/374 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+++++ EEL + KIG+ + R Q+W WIY + DF M+++S+E R+ L+
Sbjct: 2 RKNILDFSYEELVDEFSKIGLE----KFRVDQVWDWIYKKHEFDFDKMTNLSKEHRNTLS 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I PE++D +IS D T K+L + IE+V + R T C+S+QVGC
Sbjct: 58 ERFYIYVPELLDMQISQIDKTTKFLWKLE-----DDNTIESVLLFHPDRVTACISTQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
C+FC TG VRNL+A EI+ Q++ I NIV
Sbjct: 113 PAKCAFCATGQSGFVRNLSAGEIVSQIIAMEKH-----------------RKVNIGNIVY 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N+ V KS+ + + G + S RRI++ST G I + ++ V LAISL
Sbjct: 156 MGMGEPLLNYKEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAISL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N R+I+VP+N+KY +E +I + + Y ++ R+TFEY++++ ND DA L
Sbjct: 216 HAPNNYKRDIIVPMNKKYSVEEIIQSAKEYQKIT-KNRVTFEYILIREFNDFVDDAEKLA 274
Query: 304 KILKGIPAKINLIPFNPWPGCE---YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++LKG+ A +NLIP NP P + I F E + + + IR +G DI A
Sbjct: 275 ELLKGMGAYVNLIPVNPVPSSGELKFERPHHWAIERFKEVLDKHNIENEIRREKGTDIDA 334
Query: 361 ACGQLKSLSKRIPK 374
ACGQL+ K
Sbjct: 335 ACGQLRRRYITNKK 348
>gi|23100552|ref|NP_694019.1| hypothetical protein OB3097 [Oceanobacillus iheyensis HTE831]
gi|81745262|sp|Q8ELW7|RLMN_OCEIH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|22778785|dbj|BAC15053.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 355
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 120/375 (32%), Positives = 201/375 (53%), Gaps = 26/375 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K S+ G+ E+L++ L++ G R R Q+W W+Y + I F M++++Q L
Sbjct: 1 MSKSSIYGLTYEKLKDWLIEHG----EKRFRAEQVWNWLYKKRINSFDEMNNVNQSAIQL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + + S DGT K+L + IETV + ++CV++QVG
Sbjct: 57 LKDNFVLHTMGEEIRQESQDGTIKFLFKLE-----DGNLIETVLMRFHYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G + R+L++ E++ Q++ + L + ++S+IV
Sbjct: 112 CNIGCTFCASGLLRKSRDLSSGEVVEQIMNVQKHLDE------------RGEKDRVSHIV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEP N++N+ L +D GL+ R IT+STSG I ++ V LAIS
Sbjct: 160 VMGIGEPFDNYNNLMDFLYTVNDDRGLNIGARHITVSTSGLAHKIYEFADDPIQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++LR ++ INR +P++ L+ + +Y N RIT+EY+ML +ND ++A+ L
Sbjct: 220 LHAPNDELRTKIMKINRAFPIDKLMKSVDYYLQKKNR-RITYEYIMLDDVNDHKKEAIEL 278
Query: 303 IKILKGIP--AKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++K A +NLIP+N +Y S ++I F E + G + +R G DI
Sbjct: 279 ANLIKNHRHLAYVNLIPYNTVDEHIDYRRSKSENIQAFYETLTELGINCGVRWENGADID 338
Query: 360 AACGQLKSLSKRIPK 374
AACGQL+S + K
Sbjct: 339 AACGQLRSKQIKKSK 353
>gi|157164532|ref|YP_001467818.1| radical SAM protein [Campylobacter concisus 13826]
gi|205829689|sp|A7ZGB0|RLMN_CAMC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|112801745|gb|EAT99089.1| radical SAM enzyme, Cfr family [Campylobacter concisus 13826]
Length = 381
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 140/376 (37%), Positives = 213/376 (56%), Gaps = 32/376 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + EEL+E + R +QI++W+Y + +F M ++ +++R L +
Sbjct: 2 KNLLDLSIEELKELVS--------PSFRATQIYEWVYKKNATEFSQMLNLPKDMRQDLAE 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
F + + V + S DG+ K+L V + I +R T+CV
Sbjct: 54 KFYLDPLKCVKFEQSSDGSIKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTICV 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + C+FC T LVRNLTA EI+ Q+L + R+
Sbjct: 114 SSQVGCKMGCAFCLTAKGGLVRNLTAGEIVGQILWIKR-------------ENKIPYERR 160
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
I N+V MGMGEPL N NV K++ I + + GL+ S RR T+STSG I ++G ++GV
Sbjct: 161 I-NVVYMGMGEPLDNLTNVSKAIKILALNEGLAISPRRQTVSTSGLGSQIKKLGEMDLGV 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+LAISLHAV+N+LR+ L+PIN+ Y +E ++DA R +P + +R+ FEY+++K +NDS
Sbjct: 220 LLAISLHAVTNELRSRLMPINKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIKDLNDSVS 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA L+K+L GI AK+NLI FNP G E+ + ++ F E ++ G + IR +GLD
Sbjct: 279 DAKKLVKLLHGIKAKVNLIYFNPHEGSEFGRPELASMLKFQEYLRDHGVTCTIRQSKGLD 338
Query: 358 ILAACGQLKSLSKRIP 373
I AACGQLK ++
Sbjct: 339 ISAACGQLKQRNENPK 354
>gi|239618306|ref|YP_002941628.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1]
gi|239507137|gb|ACR80624.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1]
Length = 343
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 195/368 (52%), Gaps = 30/368 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+ M +EL + L+ G + R SQI+ WIY + + +F M+++ ++ R L+ F
Sbjct: 3 LLEMTLDELRKVLVDEGYE----KYRASQIFDWIYKKKVLNFSNMTNLPKDFRKFLSGTF 58
Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
IV +S DGT K+L + IE+V + T C+S+QVGC L
Sbjct: 59 RYPEMTIVRRSLSKIDGTEKFLWKLH-----DGEFIESVILRHPDHTTFCISTQVGCQLG 113
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG RNL+ EI+ QV+ + G+ ++NIV MGM
Sbjct: 114 CIFCATGMSGFKRNLSVSEIVGQVIFMEKSM-----------------GKNVTNIVFMGM 156
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
GEP N DNV KS+ I + G + R T+ST+G I R+ + + V L++SLHA
Sbjct: 157 GEPFLNTDNVFKSIEILHEPAGRNLGIRHFTISTAGIPEGIIRLADSGMDVRLSLSLHAA 216
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++ R++L+PIN++Y ++ L+ + +Y +N RIT EY+++ GINDS DA L K+
Sbjct: 217 TDEKRSMLMPINKRYNIQQLMASLEYYQRKTNR-RITIEYILIDGINDSIEDAKQLAKLF 275
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K + +N+I NP ++ + F+ +K+ G + IRT +G DI AACGQL+
Sbjct: 276 KHLKIFVNIIAINPVVPT-LKRPSREKVERFAIELKKHGIEAAIRTEKGSDIDAACGQLR 334
Query: 367 SLSKRIPK 374
+ + +
Sbjct: 335 RKNLQEER 342
>gi|269123374|ref|YP_003305951.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM
12112]
gi|268314700|gb|ACZ01074.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM
12112]
Length = 353
Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats.
Identities = 130/377 (34%), Positives = 199/377 (52%), Gaps = 26/377 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K ++ + +ELE+ L++G+ + Q+++W++ + + +F S+IS+E R L
Sbjct: 1 MVKIDILDLSLDELEKMFLELGL----KKFNALQVYQWLHKKLVFNFDEFSNISKETREL 56
Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + F I + V + S T K+L P G IE+V + K+R ++CVSSQV
Sbjct: 57 LKEKFEIGTLKYVTHQTSKDKETVKFLFSLP-----GKKLIESVLLKYKNRYSICVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC L C FC TG K +NL A EIL+Q ++ L + KISN+
Sbjct: 112 GCPLKCDFCATGMMKFEKNLKASEILMQFYYLQNYLKE--------------KNDKISNV 157
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEP N+D V KS++I + G +FSKR T+STSG + I + E+ V LAI
Sbjct: 158 VYMGMGEPFLNYDAVNKSINILNSKEGQAFSKRNFTISTSGLINEIDKFVEDQKQVGLAI 217
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+V+ R+ L+PIN+ PL+ L ++ +Y + RITFEY+++ N DA+
Sbjct: 218 SLHSVNEKRRSELMPINKINPLDKLRESLLNYQNKT-KNRITFEYILIDDFNCEKEDAVA 276
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+K ++ +NLIP+N G Y + F + + +R +G DI AA
Sbjct: 277 LVKFMRSFNHLVNLIPYNKVAGKPYKTPSLQKQKEFYNHLLSHKINVTLRETKGEDIQAA 336
Query: 362 CGQLKSLSKRIPKVPRQ 378
CGQLK + I
Sbjct: 337 CGQLKVKKEEINNEESN 353
>gi|205829720|sp|Q6MDD0|RLMN2_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=23S rRNA m2A2503 methyltransferase 2
Length = 358
Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 184/362 (50%), Gaps = 26/362 (7%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
++L E L G QI WIY +G+ + MS++SQ +R L +H +
Sbjct: 5 DFDHQKLVEWLKAHG----EKEFHAKQILSWIYQKGVLSWDKMSNLSQSLREKLAKHIRL 60
Query: 71 IYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
E+V S T K+L R +E+V I R T+CVSSQVGC C+
Sbjct: 61 PVLELVRYTESIDQETIKFLWRLR-----DGNLVESVLILSGIRRTVCVSSQVGCPAKCA 115
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC +G Q RNL EI+ Q+L + L S G K+S++V MGMGE
Sbjct: 116 FCASGQQGFFRNLRPTEIIEQILQINAWLS--------------SKGEKVSHVVYMGMGE 161
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL N+++V S+ + S + S+RRIT+ST G V I R+ +E V L +SLHA +
Sbjct: 162 PLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQ 221
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+R ++P RKYPLE ++++ Y + ITFEY +L GIND P A L +LKG
Sbjct: 222 HIRKKIIPYARKYPLEEILESMDEYAQKTKRD-ITFEYTLLAGINDHPDHAHELAHLLKG 280
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+NLIP+NP PG ++K I F + S + R +G DI AACGQL
Sbjct: 281 KQCTVNLIPYNPIPGLRLKRPEKKAIKQFRSVLYGSHIVNTCRYTKGDDIGAACGQLALQ 340
Query: 369 SK 370
+
Sbjct: 341 ER 342
>gi|256420250|ref|YP_003120903.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588]
gi|256035158|gb|ACU58702.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588]
Length = 347
Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 199/365 (54%), Gaps = 25/365 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K ++ + EL++ I R Q+++W++++ F M++IS+++R L
Sbjct: 5 KTNIRHLSLPELQKYFGSI----EEKPFRAKQVYEWLWLKHATSFDAMTNISKDLRSKLE 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF++ + S DGT K R +E V IP +R T CVSSQVGCS
Sbjct: 61 EHFTLPAITTDTTQHSDDGTIKSRFRLH-----DGHMVEGVLIPTDTRQTACVSSQVGCS 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L+C FC TG RNL +EI +V L + + G+K+SNIV M
Sbjct: 116 LSCKFCATGYMDRKRNLDFDEIYDEVALLNQQAME-------------AYGKKLSNIVYM 162
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N+ NV +S+ + GL S RRIT+ST+G I ++G++ LA+SLH
Sbjct: 163 GMGEPLLNYKNVLQSIERITSPDGLGMSPRRITVSTAGVAKMIRQLGDDKVKFNLALSLH 222
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++ R+ ++PIN L++LI+A ++ + + I+FEY++ K NDS +DA LI+
Sbjct: 223 AANDEKRSQIMPINDTNNLKVLIEALNYFYKETQNQ-ISFEYILFKDFNDSFKDAEELIR 281
Query: 305 ILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
I + +PA +N+I +NP ++ D+ F E + ++ ++ +R RG DI AACG
Sbjct: 282 IYRQVPADLVNIIEYNPISNARFMKPDEDVAEAFMEYLSKNRVNARLRRSRGKDIDAACG 341
Query: 364 QLKSL 368
QL +
Sbjct: 342 QLANK 346
>gi|325280884|ref|YP_004253426.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
splanchnicus DSM 20712]
gi|324312693|gb|ADY33246.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
splanchnicus DSM 20712]
Length = 351
Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats.
Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 25/367 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+++ +L + L G R QIW+WI+ RG+ DF MS++S+ R LL
Sbjct: 6 NKKNIREESLRDLSDFLTAQG----EKAFRAKQIWQWIWQRGVTDFAEMSNLSKATRELL 61
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++H+ + + DGT K R +E+V IP + T+CVSSQVGC
Sbjct: 62 SRHYFFDSLFPQQVQTASDGTEKTAWRLT-----DGEIVESVLIPGNQKFTVCVSSQVGC 116
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L C FC TGT RNLTA EI QV+ + G+ +SNIV
Sbjct: 117 QLGCKFCATGTLGFKRNLTAGEIFEQVV--------------RAQQAAEAQGQPLSNIVF 162
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N++ V +++ + GL+ S RIT+ST+G I ++ ++ + LA+SL
Sbjct: 163 MGMGEPLLNYEQVLRAIERITAQDGLAMSPYRITVSTAGIPEKIRQLADDGVRFNLALSL 222
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA R L+P+N+ YPL + + +++ + R TFEY++LK INDS DA L
Sbjct: 223 HAAKETTRTFLMPVNKAYPLSEIAGSLKYFVEKT-GTRPTFEYLLLKDINDSLEDAKALA 281
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ P KIN+I +N G + S K+ F ++ +R +G DI AACG
Sbjct: 282 LYCRQFPIKINIIEYNNVEGSGFHHSPDKNRDAFIRFLEGCNMVVNVRRSKGKDIDAACG 341
Query: 364 QLKSLSK 370
QL +
Sbjct: 342 QLAGKQE 348
>gi|257059331|ref|YP_003137219.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
8802]
gi|256589497|gb|ACV00384.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8802]
Length = 340
Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats.
Identities = 132/363 (36%), Positives = 195/363 (53%), Gaps = 31/363 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G +EL + + K G P R Q+ +W+Y +G R +S + R L ++
Sbjct: 8 LLGKSLDELTQWVEKQGQPT----YRGKQLHQWLYEKGARSLDEISVFPKIWREKLI-NY 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I ++ D TRK+LL G + IETV IP R T+CVSSQVGC + C
Sbjct: 63 PIGRSTIDYRTVAPDATRKYLLCL-----GDGLIIETVGIPTAKRLTVCVSSQVGCPMAC 117
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG R+L A EI+ QVL + R++S++V MGMG
Sbjct: 118 DFCATGKGGYQRHLRAHEIVDQVLTVQEDF-----------------QRRVSHVVFMGMG 160
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N + V KS+ I + +G+ +R +T+ST G I ++ V LA+SLHA +
Sbjct: 161 EPLLNLEEVVKSVKILNQDIGIG--QRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P + YPL+ L+ CR Y ++ RRI+FEYV+L G+ND P A+ L +LK
Sbjct: 219 QPLRETLIPSAQHYPLKNLLADCREYVNIT-GRRISFEYVLLGGVNDLPEQAIELANLLK 277
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y +Q I TF + +++ + +R RGL+ AACGQL++
Sbjct: 278 GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLEANAACGQLRA 337
Query: 368 LSK 370
+
Sbjct: 338 SQR 340
>gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis]
Length = 360
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 18/367 (4%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K L G++ EE+ + L + G P R QI+KW+ R +R+ M+D+ Q +R
Sbjct: 4 LTEKTELRGLLPEEMAQTLQEWGHPA----YRGKQIFKWVQSRAVREAAEMTDLPQALRS 59
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + + ++S DGT K+L + + V + + R T+C+S+Q
Sbjct: 60 KIEAERWLRPLALSCCRVSKDGTEKYLWQLADGELIETVLMPYRRSQTRDRVTVCLSTQA 119
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC L C FC TG Q RNLTA EI+ QVL G K++N+
Sbjct: 120 GCPLGCKFCATGQQGFRRNLTAGEIVSQVLDITHRKGQ------------SDPDFKVTNL 167
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241
V MGMGEP N++ V++++ + + G + +RRIT+STSG VP I R E + LA+
Sbjct: 168 VFMGMGEPFLNYEQVRRAIELFTHPEGQNIGQRRITVSTSGIVPGIERFARENWEINLAL 227
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + LR+ +P+NR+YP+E +++ACR Y RR++ EY +++G+ND DA
Sbjct: 228 SLHAADDQLRSQWMPVNRQYPIEKVLNACRRYWE-QGRRRLSVEYALIEGVNDRLEDARQ 286
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L K+ P +N+IP NP D+ +V F + +KR G + IR RG+DI AA
Sbjct: 287 LGKLFTRWPIHLNVIPVNPVTESGARRPDKARMVQFLDELKRQGIDAVIREERGVDIEAA 346
Query: 362 CGQLKSL 368
CGQL+
Sbjct: 347 CGQLRGA 353
>gi|297182513|gb|ADI18675.1| predicted Fe-S cluster redox enzyme [uncultured Acidobacteria
bacterium HF4000_26D02]
Length = 384
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 143/381 (37%), Positives = 202/381 (53%), Gaps = 26/381 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K + + ELE + +G+ R QI++WIY RG+ F M+D+S VR L
Sbjct: 29 SKTDIAELEPAELEAVVSTLGVE----RFHARQIYRWIYRRGLERFDRMTDLSLPVREQL 84
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+I P + + S DGT+K+L+ IE+V+IP+ T CVS+QVGC
Sbjct: 85 EAALTITTPAVRTREQSSDGTQKFLVTL-----ADGRTIESVFIPDTPAMTFCVSTQVGC 139
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC TG LVRNL+A EI QV + L + + NIV+
Sbjct: 140 AMRCGFCLTGQMGLVRNLSAGEIAGQVRVLAREL---------------ELQDRRFNIVL 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243
MGMGEPL N+D K+L I + GL+ + RR+TLST G +P + R+ E LAISL
Sbjct: 185 MGMGEPLHNYDATMKALRILAAPAGLALTPRRVTLSTIGILPALERLAHEPWLPNLAISL 244
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ LR+ L+P +R L L CR +P + + RITFEYV+L G+ND+ DA L
Sbjct: 245 HATTDRLRHELIPTSRTQRLGDLAAVCRRFP-VKHRDRITFEYVLLAGVNDTEADATRLP 303
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ AK+NLIP N PG + + + F+ + +G +R RG DI AACG
Sbjct: 304 KLLRGLRAKVNLIPLNEAPGIPFSRPSDRRVDWFARSLASAGLRVSVRKSRGRDIRAACG 363
Query: 364 QLKSLSKRIPKVPRQEMQITG 384
QL R R + G
Sbjct: 364 QLIVEGPRRSPGQRAAEILNG 384
>gi|225028096|ref|ZP_03717288.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353]
gi|224954566|gb|EEG35775.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353]
Length = 349
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 29/367 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQ 66
L M EEL + ++++G + R QI+ W++ + +R + M ++ + L +
Sbjct: 6 DLKSMTLEELTDCVMELG----EKKFRAKQIYGWLHQKLVRSPEEMKNVPAKCIEKLLKE 61
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
H E+ + DGT+K+L +E+V + K ++C+SSQ GC +
Sbjct: 62 HPFYGVEEVEHYESKIDGTQKFLFSLH-----DGNMVESVLMKYKHGNSVCISSQAGCRM 116
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + L RNL E+L Q+ + + G ++S++V+MG
Sbjct: 117 GCRFCASTLLGLSRNLYPSEMLDQIYAIQK-----------------ATGERVSHLVVMG 159
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP NF+++ + + + GL+ S R IT+ST G VP I + V LAISLH+
Sbjct: 160 TGEPFDNFESLCRMIELLCSPDGLNISHRNITVSTCGIVPKIYEFADRNPQVTLAISLHS 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +R L+PI KY ++ L++A R+Y + RRITFEY ++KG+ND A LI
Sbjct: 220 PNDTMRRELMPIANKYSMDELMEAARYYTR-TTGRRITFEYSLVKGVNDKKEHAQELISR 278
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+KG+ INLIP NP ++ S Q ++ F ++R +R G DI AACGQL
Sbjct: 279 VKGMNCHINLIPVNPIKERDFEQSTQNNVAAFKHILERQHIQVTVRREMGRDIQAACGQL 338
Query: 366 KSLSKRI 372
+ K
Sbjct: 339 RKSYKER 345
>gi|302558123|ref|ZP_07310465.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000]
gi|302475741|gb|EFL38834.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000]
Length = 368
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 181/368 (49%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA++ G R Q+ + + R D + +DI R L +
Sbjct: 20 RHLADLTPAERKEAVVAAG----EKPFRAKQLSQHYFARYAHDPELWTDIPAGSRGKLQE 75
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + TRK L + +E+V + R T+C+SSQ GC
Sbjct: 76 ALLPELMTVVRHLSTDQGTTRKTLWKL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LAIS
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAVHRFSDEGFKCRLAIS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARS-GRRLSIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P +NLIP NP PG ++ S +D F E I G IR RG +I AC
Sbjct: 301 GRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAASER 368
>gi|217967818|ref|YP_002353324.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724]
gi|254807171|sp|B8E0X3|RLMN_DICTD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|217336917|gb|ACK42710.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724]
Length = 348
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 141/374 (37%), Positives = 206/374 (55%), Gaps = 31/374 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +++ E+ L G P R QI+ WIY + + + M+++S+ +
Sbjct: 1 MN-----NILSFEINEIRNILQGWGEP----SYRADQIFDWIYKKLVLNPLDMTNLSKTL 51
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L ++FS P++V T+K+LL IETV I K+R T+CVS
Sbjct: 52 RQKLLEYFSFQIPKVV-RITGDGNTKKYLLELE-----DGENIETVLISHKNRNTVCVSV 105
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG L RNL EI+ Q+++ + L KIS
Sbjct: 106 QVGCPIGCKFCATGLIGLKRNLETHEIIGQLMVIQEDL--------------EKKEEKIS 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
N+V MGMGEPL N+DNV KS+ I + G + + ITLST G +P I ++ EE + L
Sbjct: 152 NVVYMGMGEPLANYDNVIKSIRIIKEEWGFNIGSKHITLSTIGIIPKIYQLAEENLKIRL 211
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLHA +N+LR+ ++PIN++YP+E L+++ +Y + RR+TFEYV++K ND DA
Sbjct: 212 AISLHASNNELRSKIIPINKEYPIEELLESAFYYAEKT-GRRVTFEYVLIKNFNDRREDA 270
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+++LKG PA +NLIP+N + SD KDI F E + SG + +R G I
Sbjct: 271 KELVRLLKGKPAHVNLIPWNKVREYPWETSDLKDIFRFKEILANSGINVTLRISYGSKIK 330
Query: 360 AACGQLKSLSKRIP 373
A CGQL++L +
Sbjct: 331 AGCGQLRALYLKNK 344
>gi|320451516|ref|YP_004203612.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
gi|320151685|gb|ADW23063.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
Length = 349
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 142/367 (38%), Positives = 196/367 (53%), Gaps = 32/367 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S++ ++ EEL R +QI W+Y RG DF M+D+ + R L
Sbjct: 2 RSILELLPEEL-----------PGEGYRKAQIAHWLYARGAMDFSEMTDLPKGFREALAG 50
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ I +V+ S DG+ K+L + E VY+P ++R T+C+SS VGC
Sbjct: 51 EWRISEFALVEAYPSRDGSVKYLFTLL-----DGKKTEAVYMPYENRKTVCLSSMVGCPA 105
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG RNLTA EIL Q+L G P R I N+V+MG
Sbjct: 106 GCTFCATGALGFGRNLTAAEILSQLLAIAHHQGISP--------------RDIRNVVLMG 151
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N NV K++ GL+ S RRITLST G I R+ EE GV LA+SLHA
Sbjct: 152 MGEPLLNLGNVLKAIRTMLHPKGLAMSPRRITLSTVGIPKGIHRLAEEDLGVRLALSLHA 211
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R ++P +Y + +++A RHY + R+TFEY +LKG+ND P A L K+
Sbjct: 212 PDDETRRKIIPTAHRYSVGEILEAVRHYYARTKR-RVTFEYTLLKGLNDHPWQARLLAKL 270
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKGI A +NLIPFNPW G + + I+ F+E ++R G + IR RG D+ AACGQL
Sbjct: 271 LKGISAHVNLIPFNPWEGAPVEGTPKAGILAFAEELRRLGIPTSIRFSRGQDVGAACGQL 330
Query: 366 KSLSKRI 372
+ +
Sbjct: 331 ALKAPKA 337
>gi|297519092|ref|ZP_06937478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
OP50]
Length = 330
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 142/334 (42%), Positives = 192/334 (57%), Gaps = 22/334 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L
Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+
Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T Q RNL EI+ QV A ++G + R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
++LK P KINLIP+NP+PG Y S I F
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 330
>gi|301057688|ref|ZP_07198761.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
gi|300448149|gb|EFK11841.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
Length = 346
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 146/366 (39%), Positives = 206/366 (56%), Gaps = 25/366 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L G+ E+E+ + G+ R QI WI R + F M ++ +++R L
Sbjct: 1 MSLIDLKGLSAAEMEKWAVDNGMEA----YRGRQIRHWILTRFAKSFDEMDNLPKKLRSL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + + S DGTRK+L + IETV IPE+ TLCVSSQVG
Sbjct: 57 LKEKAHLSSLRELKAIQSEDGTRKYLYQLQ-----DGHSIETVLIPERDHLTLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG Q +RNL EI+ QV+ + L ++ NIV
Sbjct: 112 CAMGCVFCATGKQGFIRNLKPGEIIEQVIRTKQSLA---------------FPDRLRNIV 156
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
+MGMGEPL N+D V K+L D G++FS R++TLST G VP I ++ ++I + LA+SL
Sbjct: 157 LMGMGEPLANYDAVIKALRNIIDPDGMNFSHRKVTLSTCGLVPEIKKLAKDITINLAVSL 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+ N+ R+ L+PINRKYPLE LI+AC +P L N R ITFEY+++K ND RDA NL
Sbjct: 217 NGADNETRSRLMPINRKYPLEALIEACSSFP-LPNRRMITFEYILIKDENDRDRDAHNLC 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L G+ AKINLI N P + + ++ F E + +++ IR +G DILAACG
Sbjct: 276 RLLSGLRAKINLIQLNAAPDSPFSIPSLEKVLHFQEILTDRHFTAIIRKSKGRDILAACG 335
Query: 364 QLKSLS 369
QLK S
Sbjct: 336 QLKGTS 341
>gi|270296162|ref|ZP_06202362.1| cfr family radical SAM enzyme [Bacteroides sp. D20]
gi|317480739|ref|ZP_07939825.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36]
gi|270273566|gb|EFA19428.1| cfr family radical SAM enzyme [Bacteroides sp. D20]
gi|316903080|gb|EFV24948.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36]
Length = 346
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 130/373 (34%), Positives = 196/373 (52%), Gaps = 29/373 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K L+G+ EL+ + +G+P QI W+Y + + MS++S + R L
Sbjct: 1 MQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVG
Sbjct: 57 LKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLT+ +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTSNQIINQI-------------------SSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L I + S G ++S +R+TLS+ G + R E LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPIPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLPYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ +INLI F+ PG +D + + F + + G + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAACG 331
Query: 364 QLKSLSKRIPKVP 376
L + + K
Sbjct: 332 MLSTAKQEENKEE 344
>gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|81553682|sp|Q9X240|RLMN_THEMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 343
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 131/369 (35%), Positives = 202/369 (54%), Gaps = 30/369 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + EEL + +G+ R R QI W++ + + +F M+++S++ R LL +
Sbjct: 2 KNLLDLSYEELVTEITNLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HFSI + +++D+K+S DGT K+L IE+V + R T C+S+QVGC
Sbjct: 58 HFSISFLKLLDKKVSRIDGTTKFLWELE-----DGNTIESVMLFHPDRITACISTQVGCP 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG VRNLT EI+ Q+L +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMEK-----------------EEKKKIGNVVYM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N++N KS+ I + + RRIT+ST G I ++ EE V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N R+ LVP+N+KY +E +++A + Y + R+T EYV+++GIND DA L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQRKT-GNRVTIEYVLIRGINDEISDAKKLAE 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
IL+ + +NLIP NP ++ ++TF + +G + IR +G DI AACGQ
Sbjct: 275 ILRNMKVFVNLIPVNPTVE-GLRRPSRERLLTFKRILLENGIEAEIRREKGTDIEAACGQ 333
Query: 365 LKSLSKRIP 373
L+ +
Sbjct: 334 LRLKRIKSR 342
>gi|21223996|ref|NP_629775.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
coelicolor A3(2)]
gi|256784928|ref|ZP_05523359.1| hypothetical protein SlivT_10600 [Streptomyces lividans TK24]
gi|289768821|ref|ZP_06528199.1| cfr family radical SAM enzyme [Streptomyces lividans TK24]
gi|81556653|sp|O86754|RLMN_STRCO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|3319741|emb|CAA19907.1| conserved hypothetical protein SC6A9.22c [Streptomyces coelicolor
A3(2)]
gi|289699020|gb|EFD66449.1| cfr family radical SAM enzyme [Streptomyces lividans TK24]
Length = 368
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 179/368 (48%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R + +DI R L +
Sbjct: 20 RHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHAPEQWTDIPAGSREGLRE 75
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + TRK L + +E+V + R T+C+SSQ GC
Sbjct: 76 ALLPELMTVVRHLSTDQGTTRKTLWKL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D +P ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEVPGGPARLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R E LAIS
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTGEGFKCRLAIS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKS-GRRLSIEYALIRDINDQAWRGDRL 300
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L+G P +NLIP NP PG ++ S +D F E I G IR RG +I AC
Sbjct: 301 GRLLRGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGAC 360
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 361 GQLAASER 368
>gi|291297322|ref|YP_003508720.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279]
gi|290472281|gb|ADD29700.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279]
Length = 342
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 32/365 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ L+ + EEL R Q+ W+Y +G R + M+D+ + +R
Sbjct: 6 DQIPLLALPIEEL-----------PGQGYRRGQLAAWLYAKGARQWDEMTDLPKALRAEW 54
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + I V S DG+ K+L + E VY+P +R T+C+SS VGC
Sbjct: 55 AEQYRISEFTEVAPFPSQDGSVKYLFTLL-----DGQKTEAVYMPYLNRKTICISSMVGC 109
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
C+FC TG RNLTA E+L QVL A R+I N+V+
Sbjct: 110 PAGCTFCATGRMGFGRNLTAAEMLDQVLFAAYH--------------QQHAPREIRNVVL 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N +NV K+L GL+ S RRITLST G I ++ E V LA+SL
Sbjct: 156 MGMGEPLLNLENVFKALERMLHPEGLAMSPRRITLSTVGIPRGIYKMAEWGLEVRLALSL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ R ++P +Y + +++A RHY + RIT EY +LKG+ND A L
Sbjct: 216 HAPDDETRQRIIPTAHRYSIAEIMEAVRHYYAKTKR-RITLEYTLLKGVNDHDWQARALA 274
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ +G+ +NLIP+NPW G + + + I+ F+ +++ G + +R RG D+ AACG
Sbjct: 275 QHFRGLSVHMNLIPWNPWEGAPHQGTPRAQILKFAAILEQQGIPTSVRWSRGRDVGAACG 334
Query: 364 QLKSL 368
QL
Sbjct: 335 QLALK 339
>gi|182415989|ref|YP_001821055.1| radical SAM protein [Opitutus terrae PB90-1]
gi|205829654|sp|B2A0B9|RLMN3_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 3;
AltName: Full=23S rRNA m2A2503 methyltransferase 3
gi|177843203|gb|ACB77455.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
Length = 374
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 194/374 (51%), Gaps = 16/374 (4%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L G E L L + G P R SQI W+Y + R + GM+++ + +R L+
Sbjct: 7 KPPLTGETLESLTARLRERGEPA----FRASQILDWVYKKRARSWDGMTNLPKPLRTWLD 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI---PEKSRGTLCVSSQV 122
F ++ +V K S D T K LL + V I + SR T+C+S+QV
Sbjct: 63 DTFDLMPATLVLNKQSADVTDKLLLELRDGSLIETVIIRAPQEGVGQDHSRKTICISTQV 122
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC +G L R+L+A EI+ Q+L ED NI
Sbjct: 123 GCAMGCVFCASGLAGLKRDLSAGEIVAQLLQV-------CYREDALTPRAHMELASFDNI 175
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MGMGEPL N+D + ++L+I + GL F RRIT+STSG VP I ++ +E G LAI
Sbjct: 176 VVMGMGEPLANYDALIRALTILNADWGLGFGARRITVSTSGLVPKILQLADEPLGFRLAI 235
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH ++++R ++P+N+ +PL L+ A + + IT E++++ G+NDS A
Sbjct: 236 SLHGATDEVREKIMPVNKAFPLAKLLPAVKAFSEKHGRM-ITLEFILIDGVNDSLEQAEK 294
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L I + A +NLIP+N G + F++ ++ S +R +G DI AA
Sbjct: 295 LRDIALDLHAHVNLIPYNTVEGLAWKRPSITRQERFADVLRARRVSVTLRREKGHDIDAA 354
Query: 362 CGQLKSLSKRIPKV 375
CGQL+ +++ +V
Sbjct: 355 CGQLRLKTEKERQV 368
>gi|150021379|ref|YP_001306733.1| ribosomal RNA large subunit methyltransferase N [Thermosipho
melanesiensis BI429]
gi|205829916|sp|A6LN47|RLMN_THEM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|149793900|gb|ABR31348.1| radical SAM enzyme, Cfr family [Thermosipho melanesiensis BI429]
Length = 340
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 129/367 (35%), Positives = 205/367 (55%), Gaps = 30/367 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ + EEL +IG+ + R Q+ WIY + + +F+ M+++S+E R LL++
Sbjct: 2 KNILDLKYEELVNEFQRIGLE----KYRVDQVLNWIYKKKVFEFEKMTNLSKEHRKLLSE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F I P+++D +IS D T K+L IE+V + R T C+S+QVGC
Sbjct: 58 KFFIDLPKLLDMQISKIDKTTKFLWELR-----DGNTIESVALFHSGRVTACISTQVGCP 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG VRNLT EI+ Q+L + K+ N+V M
Sbjct: 113 VKCEFCATGQSGFVRNLTVGEIVSQILAIE-----------------LNRKIKVGNVVYM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL NF+NV S+ + +D L+ RRIT+ST G I + E V LA+SLH
Sbjct: 156 GMGEPLLNFENVIDSIKMLNDKKMLNIGIRRITVSTVGIPEKIIALAESGLNVKLALSLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV++ R+ ++P+N+KY +E LI + R Y ++ R+T EY++++ ND P DA+ L++
Sbjct: 216 AVTDYKRDQIIPLNKKYSVEELIYSLRKYQEIT-GNRVTIEYILIREFNDYPEDAIRLVE 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+ +NLIP NP ++ ++ + F E ++++G IR +G DI AACGQ
Sbjct: 275 LLRGLSVYVNLIPINPV-NPKFHRPNRWALERFKEILEKNGIECEIRKEKGTDIDAACGQ 333
Query: 365 LKSLSKR 371
L+ R
Sbjct: 334 LRRRKLR 340
>gi|15902720|ref|NP_358270.1| hypothetical protein spr0676 [Streptococcus pneumoniae R6]
gi|116516867|ref|YP_816163.1| hypothetical protein SPD_0669 [Streptococcus pneumoniae D39]
gi|81588140|sp|Q8DQG7|RLMN_STRR6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|122278951|sp|Q04LD5|RLMN_STRP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|15458264|gb|AAK99480.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116077443|gb|ABJ55163.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
D39]
Length = 361
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 209/375 (55%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QV C+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVDCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + K R+L EI+ Q++L + + ++S+IV+M
Sbjct: 113 IGCTFCASDLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV + +D G++ R IT+STSG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +NDS AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDSVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEYGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL+S + + +
Sbjct: 340 CGQLRSNTMKRDRQK 354
>gi|220905656|ref|YP_002480967.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
gi|219862267|gb|ACL42606.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
Length = 367
Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 191/370 (51%), Gaps = 31/370 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G + EL E + +G P R Q+ +W+Y +G+R +S + R + +
Sbjct: 27 PPLLGASQAELTEWITALGQPA----YRGQQLHQWLYQKGVRSLTEISVFPKAWRQQVAE 82
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ ++ + DGT K+LLR IETV IP R T+CVSSQVGC +
Sbjct: 83 VA-VGRSQLHYRSQAQDGTVKYLLRL-----DDGQIIETVGIPSNRRLTVCVSSQVGCPM 136
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG R+L EI+ QVL + G+++SN+V MG
Sbjct: 137 GCDFCATGKGGFRRHLDRHEIVDQVLTVQ-----------------ADFGQRVSNVVFMG 179
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N + V +++ + +G+ +R +T+ST G I R+ LA+SLHA
Sbjct: 180 MGEPLLNLEAVLEAVRCLNQDVGIG--QRFLTISTVGIPGQIRRLANHHLQATLAVSLHA 237
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P R YPLE L+ CR Y L+ RR++FEY++L G+ND P+ AL L +
Sbjct: 238 SNQPLRAQLIPSARHYPLENLLQECRDYVQLT-GRRVSFEYILLGGLNDLPQHALELAQH 296
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + +NLIP+NP +Y + + F + ++ ++ IR RGLD AACGQL
Sbjct: 297 LRGFQSHVNLIPYNPISEVDYQRPSPQRMQHFLQLLQEHHIAASIRRSRGLDQNAACGQL 356
Query: 366 KSLSKRIPKV 375
++ K
Sbjct: 357 RANQMAGVKS 366
>gi|284051696|ref|ZP_06381906.1| radical SAM protein [Arthrospira platensis str. Paraca]
gi|291570690|dbj|BAI92962.1| ribosomal RNA large subunit methyltransferase N [Arthrospira
platensis NIES-39]
Length = 344
Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 188/365 (51%), Gaps = 31/365 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L+G EL + + + G P R Q+++WIY +G + + ++ ++ R L
Sbjct: 9 KPLLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLA- 63
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ I ++ DGT K+LL+ IETV IP R T+CVSSQVGC +
Sbjct: 64 TIPVGRSTIHYRAVASDGTIKYLLKLS-----DGQIIETVGIPTHDRLTVCVSSQVGCPM 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL EI+ QVL + R++S+IV MG
Sbjct: 119 ACDFCATGKGGFFRNLETHEIVDQVLTVQEDF-----------------QRRVSHIVFMG 161
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N N +++ + +G+ +R ITLST G I ++ E + LA+SLHA
Sbjct: 162 MGEPLLNTQNAIAAITCLNRDIGIG--QRMITLSTVGIPNRIRQLAEYQLQITLAVSLHA 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P + YPLE LI CR Y L+ RR++FEYVML G+ND P A L +
Sbjct: 220 SNQTLREQLIPSAKTYPLEALISECRDYVKLT-GRRVSFEYVMLAGVNDLPTHAAELASL 278
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G + +NLIP+NP +Y I F + ++ + +R RGLD AACGQL
Sbjct: 279 MRGFQSHVNLIPYNPINEVDYQRPSPSQIQGFVKELEERRVAVSVRYSRGLDADAACGQL 338
Query: 366 KSLSK 370
++ +
Sbjct: 339 RASQE 343
>gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
petrophila RKU-1]
gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
gi|205829917|sp|A5ILF6|RLMN_THEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1]
gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
Length = 343
Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats.
Identities = 133/369 (36%), Positives = 202/369 (54%), Gaps = 30/369 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+ + EEL + +G+ R R QI WI+ + + +F M+++S++ R LL +
Sbjct: 2 KNLLDLSYEELITEITNLGLE----RYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
HFSI + +++D+K+S DGT K+L IE+V + R T C+S+QVGC
Sbjct: 58 HFSIPFLKLLDKKVSRIDGTTKFLWELE-----DGNTIESVMLFHPDRITACISTQVGCP 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG VRNLT EI+ Q+L +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMEK-----------------EEKKKIGNVVYM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N++N KS+ + + RRIT+ST G I ++ EE V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N R+ LVP+N+KY +E +++A + Y + R+T EYV++KG+ND DA L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQKKT-GNRVTIEYVLIKGMNDEISDAKKLAE 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
ILK + +NLIP NP + ++ ++TF + SG + IR +G DI AACGQ
Sbjct: 275 ILKNMKVFVNLIPVNPTVE-DLKKPSRERLLTFKRILLESGIEAEIRREKGADIEAACGQ 333
Query: 365 LKSLSKRIP 373
L+ +
Sbjct: 334 LRLKRIKST 342
>gi|156743521|ref|YP_001433650.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus
castenholzii DSM 13941]
gi|205829869|sp|A7NPY6|RLMN_ROSCS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|156234849|gb|ABU59632.1| radical SAM enzyme, Cfr family [Roseiflexus castenholzii DSM 13941]
Length = 399
Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats.
Identities = 132/393 (33%), Positives = 195/393 (49%), Gaps = 42/393 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L + E+E L G P R Q+++ +YV M+D+ +R L
Sbjct: 13 PNLYDLSLAEMERLLTDWGQPT----YRARQVFRQLYVNLADTPLAMTDLPLALRERLAN 68
Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + +G TRK L R P +E+V + R T+CVS+Q GC+
Sbjct: 69 ETRLAPVTPEQVQTADNGLTRKALFRLP-----NGALVESVLMIYLDRATVCVSTQAGCA 123
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR-------- 177
+ C FC TGT L+RNL+ EI+ QV+ A + G M P
Sbjct: 124 MGCVFCATGTLGLLRNLSPGEIVAQVVWAAREMRRLAGRPPRPTMRQPEDDAWWSPDDLE 183
Query: 178 -------------KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
++NIV MGMGEP +D +++ I D GL+ R +T+ST G
Sbjct: 184 NDAPSVPEVSSVSHVTNIVFMGMGEPFATYDRWWRAVEIIHDPRGLNIGARSMTVSTVGL 243
Query: 225 VPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
VP I R+ E + LA+SLHA +DLR+ L+PINR+YPL +L+DA R Y + RR++
Sbjct: 244 VPGIRRLATETLPINLAVSLHAPDDDLRSALMPINRRYPLAVLLDATRDYLAAT-GRRVS 302
Query: 284 FEYVMLKGINDSPRDALNLIKILKG---------IPAKINLIPFNPWPGCEYLCSDQKDI 334
FEYV+L+G ND P A L +L+G +NLIP+NP PG S+++ +
Sbjct: 303 FEYVLLQGKNDEPEHAAKLAALLRGEAGPAGLPLHLVHVNLIPWNPVPGMPLGRSERRRV 362
Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
+TF ++ G + +R RG+ I AACGQL
Sbjct: 363 LTFQRILRERGIACTVRVERGVAIAAACGQLAG 395
>gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 413
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 152/387 (39%), Positives = 209/387 (54%), Gaps = 27/387 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ + + R ELE L ++G P R QI++W+Y RGI DF MSD+ +++
Sbjct: 43 MSNHTRTDIAESERHELEHTLERLGHP----RFHARQIFQWVYKRGITDFALMSDLGRDL 98
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI------PEKSRG 114
R L + I P + ++ S DGT K+LLR V I P +R
Sbjct: 99 RAQLAESCVITTPVVERQERSQDGTVKFLLRLADGRHIESVFIPDETPAGPDGSPRAARI 158
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T CVS+QVGC++ C+FC TG + R+LTA EI QV + LG
Sbjct: 159 TFCVSTQVGCAMKCAFCLTGKMGIDRSLTAGEIAGQVRVLARELGFLETRF--------- 209
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
NIV+MGMGEPL N++ K+L + +D G + S RR+TLST G +P + R+ E
Sbjct: 210 ------NIVLMGMGEPLHNYEETMKALRVLADEHGFAMSARRMTLSTVGVLPALERLATE 263
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
LAISLHA + D R++LVPINRKY L+ L+DACR +P L RITFEYV+L+ +N
Sbjct: 264 PLMPNLAISLHATTEDQRDLLVPINRKYGLKELLDACRRFP-LKRRERITFEYVLLREVN 322
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D+P DA L+K+L GI K+NL+P N G + + +F+ + G +R
Sbjct: 323 DTPEDARRLVKLLHGIKGKVNLLPLNEAAGIPFERPSDDRVNSFARILADHGIPVSVRKS 382
Query: 354 RGLDILAACGQLKSLSKRIPKVPRQEM 380
RG DI AACGQL + S R R M
Sbjct: 383 RGRDIRAACGQLITESDRKAPGARLAM 409
>gi|260654398|ref|ZP_05859888.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1]
gi|260631031|gb|EEX49225.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1]
Length = 352
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 120/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ + +E L I + QI +WIY + + D+ GM+++S+++R L + S
Sbjct: 8 LELSYDE---WLTLIQEQFGAKKFVADQICQWIYQKKVFDWNGMTNLSKDLRAALAERVS 64
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
I+ P +V+ +IS DGT+K+L +E+V + + T C+SSQVGC L C+
Sbjct: 65 IVPPVLVERQISADGTKKYLWELS-----DGARVESVLMDHGNHLTACLSSQVGCPLKCA 119
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG RN+TA EI+ L + L G+ I N+V MGMGE
Sbjct: 120 FCATGRGGFERNMTAGEIVGHFLAMEADL-----------------GKPIGNVVFMGMGE 162
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL NF NV++++ + R +T+ST+G I ++ + GV L +SLHA ++
Sbjct: 163 PLLNFVNVERAIRCLLEPKMRGMGVRHVTISTAGVADGIRKLADSGLGVYLCLSLHAPND 222
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+LR+ L+PIN +YPL ++DA +++ G + R+T EYV++KG+ D P A L +
Sbjct: 223 ELRSRLMPINERYPLPQVLDALKYWQGKT-GVRLTVEYVLIKGVTDLPELAYELPTLFSD 281
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ +NLIP+NP + I F++ ++ G +R +G DI AACGQL++
Sbjct: 282 LQTYVNLIPYNPVIPS-FSRPSASRIEPFAKILRELGMEVEVRREKGTDIDAACGQLRAK 340
Query: 369 SKRIPKVPRQE 379
R + ++
Sbjct: 341 KDRPGERETRK 351
>gi|46199876|ref|YP_005543.1| florfenicol resistance protein [Thermus thermophilus HB27]
gi|81567593|sp|Q72HC1|RLMN_THET2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27]
Length = 355
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 138/366 (37%), Positives = 198/366 (54%), Gaps = 32/366 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++ ++ EEL R +QI W+Y +G RDF M+D+ + +R L +
Sbjct: 8 KPILELLPEEL-----------PGEGYRRAQIAHWLYAKGARDFSEMTDLPKALREALAR 56
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + +V S DG+ K+L + E VY+P ++R T+C+S+ VGC
Sbjct: 57 EWRLSEFSLVQAFPSQDGSVKYLFTLL-----DGKKTEAVYMPYENRKTVCLSTMVGCPA 111
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG RNLTA EIL Q+L G P R+I N+V+MG
Sbjct: 112 GCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSP--------------REIRNVVLMG 157
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N NV K++ I L+ S RR+TLST G I R+ EE GV LA+SLHA
Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R ++P +YP+ +++A RHY + R+TFEY +LKG+ND A L K+
Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKR-RVTFEYTLLKGVNDHLWQARLLAKL 276
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ A +NLIPFNPW G + + ++ F+E +KR G + IR RG D+ AACGQL
Sbjct: 277 LKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336
Query: 366 KSLSKR 371
R
Sbjct: 337 ALKVPR 342
>gi|332204776|gb|EGJ18841.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47901]
Length = 361
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 206/375 (54%), Gaps = 26/375 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELP-----DGMLIETVLMCQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + + +IS+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N++NV +D G++ R IT+S SG I +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279
Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA
Sbjct: 280 LLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339
Query: 362 CGQLKSLSKRIPKVP 376
CGQL + + +
Sbjct: 340 CGQLLFNTMKRDRQK 354
>gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB8]
gi|81363686|sp|Q5SGZ3|RLMN_THET8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 355
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 138/366 (37%), Positives = 199/366 (54%), Gaps = 32/366 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++ ++ EEL R +QI W+Y +G RDF M+D+ + +R L +
Sbjct: 8 KPILELLPEEL-----------PGEGYRRAQIAHWLYAKGARDFSEMTDLPKALREALAR 56
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + +V S DG+ K+L + E VY+P ++R T+C+S+ VGC
Sbjct: 57 EWRLSEFSLVQAFPSQDGSVKYLFTLL-----DGKKTEAVYMPYENRKTVCLSTMVGCPA 111
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG RNLTA EIL Q+L G P R+I N+V+MG
Sbjct: 112 GCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSP--------------REIRNVVLMG 157
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N NV K++ I L+ S RR+TLST G I R+ EE GV LA+SLHA
Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R ++P +YP+ +++A RHY + R+TFEY +LKG+ND A L K+
Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKR-RVTFEYTLLKGVNDHLWQARLLAKL 276
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ A +NLIPFNPW G + + + ++ F+E +KR G + IR RG D+ AACGQL
Sbjct: 277 LKGLSAHVNLIPFNPWEGAPVVGTPRAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336
Query: 366 KSLSKR 371
R
Sbjct: 337 ALKVPR 342
>gi|296268984|ref|YP_003651616.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833]
gi|296091771|gb|ADG87723.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833]
Length = 388
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 120/372 (32%), Positives = 179/372 (48%), Gaps = 23/372 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +A+ ++G R Q+ + + R + M+D+ R L
Sbjct: 32 RHLADLTMAERRDAVAELG----ERPFRADQLSRHYFGRLTASPEQMTDLPGGSRDRLVS 87
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V E TRK L R +E+V + R T+CVSSQ GC
Sbjct: 88 ALLPPLLTPVRELACDGGTTRKTLWRL-----FDGALVESVLMRYPDRTTICVSSQAGCG 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV+ L +P +ISN+V M
Sbjct: 143 MNCPFCATGQAGLTRNLSTAEIVEQVVAGARSLAK---------GEVPGGPGRISNVVFM 193
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEP+ N+ V ++ + GL S R IT+ST G VP I R+ +E V LA+S
Sbjct: 194 GMGEPMANYKAVVAAIRRLTSPVPEGLGISARGITVSTVGLVPAIERLAQEGLPVTLAVS 253
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVPIN ++ + ++DA +Y ++ R++ EY +++ IND A L
Sbjct: 254 LHAPDDELRDTLVPINTRWKVAEVLDAAWNYAAVTKR-RVSIEYALIRDINDQEWRADLL 312
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L+G A +NLIP NP PG + S +D F ++ G +R RG +I AC
Sbjct: 313 GRLLQGRLAHVNLIPLNPTPGSPWTASRPRDERAFVRRLESYGIPVTVRDTRGREIDGAC 372
Query: 363 GQLKSLSKRIPK 374
GQL + + K
Sbjct: 373 GQLAARDREDRK 384
>gi|329936699|ref|ZP_08286406.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
griseoaurantiacus M045]
gi|329303929|gb|EGG47812.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
griseoaurantiacus M045]
Length = 370
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 128/368 (34%), Positives = 182/368 (49%), Gaps = 23/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +EA+ IG R Q+ + + R D Q +DI R L +
Sbjct: 22 RHLADLSPAERKEAVSAIG----EKPFRAKQLSQHYFARYSHDPQEWTDIPAASRGRLRE 77
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+V + D TRK L R +E+V + R T+C+SSQ GC
Sbjct: 78 ALLPELMTVVRHLSTDADTTRKTLWRL-----FDGTLVESVLMRYPDRVTMCISSQAGCG 132
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q++ L D IP ++SNIV M
Sbjct: 133 MNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD---------GEIPGGPARLSNIVFM 183
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LAIS
Sbjct: 184 GMGEPLANYNRVVAAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTDEGFKCRLAIS 243
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L
Sbjct: 244 LHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARS-GRRLSIEYALIRDINDQAWRGDRL 302
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG P +NLIP NP PG ++ S +D F E I G +R RG +I AC
Sbjct: 303 GRLLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 362
Query: 363 GQLKSLSK 370
GQL + +
Sbjct: 363 GQLAATER 370
>gi|238063328|ref|ZP_04608037.1| radical SAM domain-containing protein [Micromonospora sp. ATCC
39149]
gi|237885139|gb|EEP73967.1| radical SAM domain-containing protein [Micromonospora sp. ATCC
39149]
Length = 363
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 120/382 (31%), Positives = 183/382 (47%), Gaps = 23/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + + + ++G P R Q+ + R +RD M+D+ +R
Sbjct: 1 MPPRHLADLDLPARQALVTELGEPA----FRAKQMSTHYFGRLVRDPASMTDLPAAIRDR 56
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L V E D TRK L R +E+V + R T+C+SSQ
Sbjct: 57 LAGELLPTLLTPVRELACDDGATRKALWRLH-----DGSLVESVLMGYPDRVTVCISSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ Q + + ++S++
Sbjct: 112 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSHV 162
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N+ V ++ A GL S+R IT+ST G VP I R+ E V L
Sbjct: 163 VFMGMGEPLANYSRVVAAIRRLVAPVPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 222
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ LVP+N+++ + ++DA Y + RR++ EY M+K +ND P A
Sbjct: 223 ALSLHAPDDELRDELVPVNQRWKVAEVLDAAWDYAART-GRRVSIEYAMIKNVNDQPWRA 281
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L G +NLIP NP PG + S + F ++ +G S+ +R RG +I
Sbjct: 282 DLLGQLLAGRLTHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 341
Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
ACGQL + R + P++
Sbjct: 342 GACGQLAAAGDRDTETPQEATA 363
>gi|255326866|ref|ZP_05367942.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296]
gi|255296083|gb|EET75424.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296]
Length = 404
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 115/370 (31%), Positives = 175/370 (47%), Gaps = 15/370 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E L ++G R SQ+ K + R + D M+D+ + R +
Sbjct: 44 KHIADFDMAGRREFLKELGY----QSFRASQLSKHYFERLVTDPAEMTDLPAKDREQMVA 99
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
V + G ++ + IE+V + +R T+C+SSQ GC +
Sbjct: 100 QAMPQLLTPVRTLEADGGDTLKVVH----RLFDGALIESVIMRYDNRVTMCISSQAGCGM 155
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q L RNL+ EI+ QV+ L G E+ EG + ++SNIV MG
Sbjct: 156 NCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLEEAEGGSEDTRPLRVSNIVFMG 215
Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGE L N+ ++ GL S R +T+ST G VP I + E + LA+SL
Sbjct: 216 MGEALANYKATMGAVHRLIDPSPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLALSL 275
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+PIN+++ ++ +DA Y + RR++ EY +++ IND A L
Sbjct: 276 HAPDDELRDELIPINQRWKVDETLDAAYDYYR-TTGRRVSIEYALIRDINDQGWRADLLG 334
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L +N IP NP PG ++ S + F E ++ G + IR RG DI
Sbjct: 335 KKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDG 394
Query: 361 ACGQLKSLSK 370
ACGQL +
Sbjct: 395 ACGQLAAKED 404
>gi|288573974|ref|ZP_06392331.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288569715|gb|EFC91272.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 341
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 130/360 (36%), Positives = 187/360 (51%), Gaps = 29/360 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ +E + + G P R Q+ +WIY + + D M+++S+++R L H
Sbjct: 8 LEFNYDEWRNFVDEAGEP----SYRADQLCQWIYGKKVFDIHRMTNLSKDLRSKLEGHLY 63
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+ P VD + S DGT K+L RF E+E+V + + T C+S+QVGC L C
Sbjct: 64 VQPPFAVDVQKSSDGTVKFLWRFL-----DGQEVESVLMDHGNHHTACLSTQVGCPLRCD 118
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG Q VRNLT EI+ L S L G+ I NIV MGMGE
Sbjct: 119 FCATGRQGFVRNLTVGEIVGHFLAMESWL-----------------GQDIKNIVFMGMGE 161
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL N++NVKK++ I + RRIT+STSG VP I + + V L+ SLHA ++
Sbjct: 162 PLLNWENVKKAIEILNHPKMRGMGIRRITISTSGVVPGILALADSGLDVRLSFSLHAPND 221
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+R+ L+P+N +YPL +++A + + + RIT EYV+LK IND P A + +L
Sbjct: 222 QIRSKLMPVNERYPLGQVVEALQEFQKKT-GNRITVEYVLLKRINDEPSMAYEIAALLSD 280
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ INLIP+NP Y I F ++ G +R +G DI AACGQL+
Sbjct: 281 LDVYINLIPYNPVVER-YGRPSASRINPFMATLRELGLEVELRKEKGTDIDAACGQLRGK 339
>gi|242310237|ref|ZP_04809392.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523534|gb|EEQ63400.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 346
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 137/367 (37%), Positives = 202/367 (55%), Gaps = 26/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+++ G+ EEL ++L G P + R QI+ W+YVR +F M ++ + +R
Sbjct: 1 MDKKNIFGLTLEELTQSL--NGFP----KFRAKQIYHWLYVRYENNFDKMENLPKNLREF 54
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q F+ I ++ S DG+ K+L R V ++ ++ + TLC+SSQ+G
Sbjct: 55 LKQDFTGDLVSIAKKEQSSDGSVKYLFRTADNLTYEAVFLKM----KEDKFTLCLSSQIG 110
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + CSFC T VRNL+A E++ QV + K NIV
Sbjct: 111 CKVGCSFCLTAKGGFVRNLSAGEMVYQVFAIKKD--------------QNIPSNKAVNIV 156
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++ +GV LAIS
Sbjct: 157 YMGMGEPLDNLENVSKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALNLGVQLAIS 216
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LR L+PIN+ Y ++ +ID +P + +R+ FEY+M+ +NDS A L
Sbjct: 217 LHAVDDELRTKLMPINKAYNIQSVIDEVAIFP-IDTRKRVMFEYLMIDEVNDSLECAKKL 275
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +L I AK+NLI FNP G Y +++ + F E + + G IR +GLDI AAC
Sbjct: 276 VALLNKIKAKVNLIYFNPHEGSPYKRPNKEKVEAFREFLLKKGLLCTIRESKGLDISAAC 335
Query: 363 GQLKSLS 369
GQL+
Sbjct: 336 GQLREKE 342
>gi|257125946|ref|YP_003164060.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
gi|257049885|gb|ACV39069.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
Length = 372
Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 198/372 (53%), Gaps = 26/372 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
++ ++K ++GM E L+ ++I R + SQ++ W++ + + +F S+IS++
Sbjct: 17 IDTVEKIDILGMDLESLQRKFVEI----RLKKFNASQVFDWLHNKLVFNFDEFSNISKKD 72
Query: 61 RHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R +L + F + E ++S T K+L + IE+V I K+R TLCVS
Sbjct: 73 REILKEKFYVEKLEFKTHQVSEDGDTEKFLFELKDK-----RLIESVLISHKNRHTLCVS 127
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQ+GC + C FC T T RNL+ EILLQ + L G K+
Sbjct: 128 SQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKHL--------------LQRGEKL 173
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
N+V MGMGEP N+D V S+++ + G +FSKR T+STSG V I R E +
Sbjct: 174 GNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQIN 233
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLH+V +D+RN ++PIN+++ ++ L ++ Y + RITFEY+++ +N P D
Sbjct: 234 LAISLHSVKDDVRNEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILINDLNCEPED 292
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L L +NLIP+NP G Y ++ F + +K + +R +G DI
Sbjct: 293 ARELAGFLNSFSCLVNLIPYNPVGGKPYKTPSKQKQREFYKLLKDKNVNVTLRETKGQDI 352
Query: 359 LAACGQLKSLSK 370
AACGQLK+ +
Sbjct: 353 AAACGQLKAKKE 364
>gi|297562607|ref|YP_003681581.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847055|gb|ADH69075.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 365
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 181/366 (49%), Gaps = 21/366 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E E + ++G R Q+ + + + D M+D+ R L +
Sbjct: 17 RHLADLSPDERAEVVRELG----EKPFRAKQLAQHYFGSLVSDTSAMTDLPASSRERLGE 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
V +G + L V E+V + R TLC+SSQ GC +
Sbjct: 73 ALLPTLLTPVRHITCDNGMTRKTL----WKAFDGVLFESVLMRYPDRVTLCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV+ + L + +ISNIV MG
Sbjct: 129 NCPFCATGQAGLTRNLSTGEIIDQVVASARDLANGEVAGGPG---------RISNIVFMG 179
Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEP+ N+ V +S+ +D GL S+R +T+ST G VP I ++ +E + V LAISL
Sbjct: 180 MGEPMANYKRVLQSVRRITDPVPNGLGISQRGVTVSTVGLVPAINKLIDERMQVRLAISL 239
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVPIN ++ ++ ++DA Y + RR++ EY ++K IND A L
Sbjct: 240 HAPDDELRDELVPINTRWKVDEVLDAAWRY-AGTTGRRVSIEYALIKDINDQAWRADLLG 298
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG +NLIP NP PG ++ S +D F ++ G + +R RG +I ACG
Sbjct: 299 KLLKGHLVHVNLIPLNPTPGSKWTASRPEDEREFVRRLESHGVAVTVRDTRGQEIDGACG 358
Query: 364 QLKSLS 369
QL +
Sbjct: 359 QLAAAE 364
>gi|327542013|gb|EGF28512.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica WH47]
Length = 365
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 132/372 (35%), Positives = 192/372 (51%), Gaps = 26/372 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+ ++L++ L + G R QI +W++ F+ M+D+ ++R L
Sbjct: 19 KNHLLNWSLDQLKDWLQEQG----QKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLE 74
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF+I S DGT K L+R E+E V + + R ++CVSSQVGC+
Sbjct: 75 EHFAIFNATEAVVSKSKDGTEKILVRL-----ADGGEVECVLLRDGPRRSICVSSQVGCA 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC +G + RNLT EIL Q+L + L ++S+IVMM
Sbjct: 130 MGCVFCASGLDGVDRNLTGGEILEQMLRLQQRL---------------PADERLSHIVMM 174
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
GMGEPL N V +L +A GL S RRIT+ST G P I ++ I LA+SLH
Sbjct: 175 GMGEPLANLPGVLSALDVARSEDGLGISPRRITISTVGLPPAIDKLAAAGIPYNLAVSLH 234
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LR+ LVP+NRK +E ++ A Y S RR+TFEYV+L GIND A L +
Sbjct: 235 APNDELRSELVPVNRKIGIEPVLQAADRYFHAS-GRRLTFEYVLLGGINDGDEHARQLSQ 293
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
IL+G +N+IP+NP G Y I F ++ +G + R +G +I AACGQ
Sbjct: 294 ILRGRSVMMNVIPYNPVAGLPYRTPSGAAIARFRAILESAGVNVNFRQRKGDEINAACGQ 353
Query: 365 LKSLSKRIPKVP 376
L+ +
Sbjct: 354 LRRNRGELKATK 365
>gi|283457572|ref|YP_003362155.1| putative Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18]
gi|283133570|dbj|BAI64335.1| predicted Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18]
Length = 419
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 115/370 (31%), Positives = 175/370 (47%), Gaps = 15/370 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E L ++G R SQ+ K + R + D M+D+ + R +
Sbjct: 59 KHIADFDMAGRREFLKELGY----QSFRASQLSKHYFERLVTDPAEMTDLPAKDREQMVA 114
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
V + G ++ + IE+V + +R T+C+SSQ GC +
Sbjct: 115 QAMPQLLTPVRTLEADGGDTLKVVH----RLFDGALIESVIMRYDNRVTMCISSQAGCGM 170
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q L RNL+ EI+ QV+ L G E+ EG + ++SNIV MG
Sbjct: 171 NCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLEEAEGGSEDTRPLRVSNIVFMG 230
Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGE L N+ ++ GL S R +T+ST G VP I + E + LA+SL
Sbjct: 231 MGEALANYKATMGAVHRLIDPSPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLALSL 290
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+PIN+++ ++ +DA Y + RR++ EY +++ IND A L
Sbjct: 291 HAPDDELRDELIPINQRWKVDETLDAAYDYYR-TTGRRVSIEYALIRDINDQGWRADLLG 349
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L +N IP NP PG ++ S + F E ++ G + IR RG DI
Sbjct: 350 KKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDG 409
Query: 361 ACGQLKSLSK 370
ACGQL +
Sbjct: 410 ACGQLAAKED 419
>gi|254415410|ref|ZP_05029171.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC
7420]
gi|196177885|gb|EDX72888.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC
7420]
Length = 359
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 125/363 (34%), Positives = 184/363 (50%), Gaps = 31/363 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+G EL + + + G P R Q+ WIY +G R +S S+ R L
Sbjct: 24 KTPLLGASLAELTQWVEQQGQPA----YRGRQLHNWIYQKGARRLSEISVFSKSWRQALV 79
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I + + D T K+LLR IETV IP +R T+CVSSQVGC
Sbjct: 80 DV-PIGRSTLHYRSQAPDRTVKYLLRL-----ADGNIIETVGIPTANRLTVCVSSQVGCP 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG RNL EI+ QVL + G+++SN+V M
Sbjct: 134 MACDFCATGKGGFTRNLQPHEIVDQVLTVQEDF-----------------GQRVSNVVFM 176
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
GMGEPL N + V ++ + +G+ R T+ST G I ++ ++ + A+SLH
Sbjct: 177 GMGEPLLNLEGVLAAVRSLNQDIGIGM--RSQTISTVGIRDRIRQLAEHKLQLTFAVSLH 234
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + LR L+P ++YPL L+ CR Y ++ RR+TFEY++L G+ND P + L +
Sbjct: 235 ASNQQLREQLIPSAKRYPLTDLLQECRDYVKIT-GRRVTFEYILLAGLNDQPEHGIELAQ 293
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
L+G + +NLIP+NP +Y + I F E +K+ + +R RGL+ AACGQ
Sbjct: 294 HLRGFQSHVNLIPYNPISEVDYQRPSPRRIQAFVETLKQHNIAVSVRRSRGLEKDAACGQ 353
Query: 365 LKS 367
L++
Sbjct: 354 LRA 356
>gi|209526448|ref|ZP_03274975.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328]
gi|209493083|gb|EDZ93411.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328]
Length = 346
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 128/362 (35%), Positives = 188/362 (51%), Gaps = 31/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L+G EL + + + G P R Q+++WIY +G + + ++ ++ R L
Sbjct: 9 KPLLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLA- 63
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ I ++ DGT K+LL+ IETV IP R T+CVSSQVGC +
Sbjct: 64 TIPVGRSTIHYRAVASDGTIKYLLKLS-----DGQIIETVGIPTHDRLTVCVSSQVGCPM 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL EI+ QVL + R++S+IV MG
Sbjct: 119 ACDFCATGKGGFFRNLETHEIVDQVLTVQEDF-----------------QRRVSHIVFMG 161
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N N +++ + +G+ +R ITLST G I ++ E + LA+SLHA
Sbjct: 162 MGEPLLNTQNAIAAITCLNRDIGIG--QRMITLSTVGIPNRIRQLAEYQLQITLAVSLHA 219
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P + YPLE LI CR Y L+ RR++FEYVML G+ND P A L +
Sbjct: 220 SNQTLREQLIPSAKTYPLESLISECRDYVKLT-GRRVSFEYVMLSGVNDLPSHATELASL 278
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G + +NLIP+NP +Y I F + +++ + +R RGLD AACGQL
Sbjct: 279 MRGFQSHVNLIPYNPINEVDYQRPSPSQIQDFFKELEQRRVAVSVRYSRGLDADAACGQL 338
Query: 366 KS 367
++
Sbjct: 339 RA 340
>gi|224370186|ref|YP_002604350.1| putative SAM-dependent methyltransferase [Desulfobacterium
autotrophicum HRM2]
gi|223692903|gb|ACN16186.1| putative SAM-dependent methyltransferase [Desulfobacterium
autotrophicum HRM2]
Length = 345
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 138/365 (37%), Positives = 206/365 (56%), Gaps = 23/365 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + R+EL R Q++KW+Y+R + F M+DI +++R L +
Sbjct: 2 KEITDFTRQELTAWFENN----NERSFRGGQVFKWLYLRQAQTFDEMTDIGKDLRQRLKE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F++ +IS DGT K L R IE V IPEK TLC+SSQ GC+
Sbjct: 58 NFTLSAMVFDRSEISRDGTEKLLFRLHDNAY-----IEAVLIPEKDHFTLCISSQAGCAQ 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC T RNLT EI+ Q+ A+++L R +SNIV MG
Sbjct: 113 GCKFCLTAKGGFTRNLTTGEIIGQIRTAKTVLAK------------RKAQRPLSNIVFMG 160
Query: 187 MGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
MGEPL N+D V ++LSI +D GL S RRITLST G VP I R+G + V LA+SL+A
Sbjct: 161 MGEPLANYDTVVRALSIMTDSDYGLKLSSRRITLSTCGLVPEILRLGNDTEVNLAVSLNA 220
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++ R++L+PINR+YP+ L+ AC ++ + ++ITFEY+++K +ND+ DA LI +
Sbjct: 221 TTDETRSMLMPINRRYPMHELLKACTNF-QMKPRKKITFEYILIKNVNDTMDDAKRLITL 279
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L I AK+NLIPFN ++ ++ I+ F + + ++ +R +G DI AACGQL
Sbjct: 280 LLPIRAKVNLIPFNEHDQSDFKRPSKESILAFLQMLLDHNLTAMVRKSKGDDISAACGQL 339
Query: 366 KSLSK 370
++ +
Sbjct: 340 RAKAD 344
>gi|159036879|ref|YP_001536132.1| radical SAM protein [Salinispora arenicola CNS-205]
gi|205829873|sp|A8M6B6|RLMN_SALAI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157915714|gb|ABV97141.1| radical SAM enzyme, Cfr family [Salinispora arenicola CNS-205]
Length = 380
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 116/370 (31%), Positives = 175/370 (47%), Gaps = 23/370 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + + + ++G P R R Q+ + R +RD M+D+ R
Sbjct: 20 MPPRHLADLDLAGRQALVAELGEP----RFRARQVSTHYFGRLVRDSGQMTDLPAAAREK 75
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L V E D T K L R +E+V + R T C+SSQ
Sbjct: 76 LTDRLLPTLLTPVRELTCDDGATHKALWRLH-----DGSLVESVLMGYPDRVTACLSSQA 130
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ Q + + ++S +
Sbjct: 131 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 181
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N++ V ++ A GL S+R +T+ST G VP I R+ E V L
Sbjct: 182 VFMGMGEPLANYNRVVAAIRRLVAPAPEGLGLSQRHVTVSTVGLVPAIRRLASEDLSVTL 241
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA + LR+ LVP+N+++ + +++ Y + RR++ EY M+K +ND P A
Sbjct: 242 ALSLHAPDDGLRDELVPVNQRWKVSEVLETAWEYAART-GRRVSIEYAMIKDVNDQPWRA 300
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L G A +NLIP NP PG + S + F ++ +G S+ +R RG +I
Sbjct: 301 DLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREID 360
Query: 360 AACGQLKSLS 369
ACGQL +
Sbjct: 361 GACGQLAAAE 370
>gi|32477801|ref|NP_870795.1| Fe-S-oxidoreductase [Rhodopirellula baltica SH 1]
gi|81658686|sp|Q7UHU7|RLMN_RHOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|32448358|emb|CAD77872.1| conserved hypothetical protein-putative Fe-S-oxidoreductase
[Rhodopirellula baltica SH 1]
Length = 371
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 132/372 (35%), Positives = 192/372 (51%), Gaps = 26/372 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+ ++L++ L + G R QI +W++ F+ M+D+ ++R L
Sbjct: 25 KNHLLNWSLDQLKDWLQEQG----QKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLE 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF+I S DGT K L+R E+E V + + R ++CVSSQVGC+
Sbjct: 81 EHFAIFNATEAVVSKSKDGTEKILVRL-----ADGGEVECVLLRDGPRRSICVSSQVGCA 135
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC +G + RNLT EIL Q+L + L ++S+IVMM
Sbjct: 136 MGCVFCASGLDGVDRNLTGGEILEQMLRLQQRL---------------PADERLSHIVMM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
GMGEPL N V +L +A GL S RRIT+ST G P I ++ I LA+SLH
Sbjct: 181 GMGEPLANLPGVLSALDVARSEDGLGISPRRITISTVGLPPAIDKLAAAGIPYNLAVSLH 240
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LR+ LVP+NRK +E ++ A Y S RR+TFEYV+L GIND A L +
Sbjct: 241 APNDELRSELVPVNRKIGIEPVLQAADRYFHAS-GRRLTFEYVLLGGINDGDEHARQLSQ 299
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
IL+G +N+IP+NP G Y I F ++ +G + R +G +I AACGQ
Sbjct: 300 ILRGRSVMMNVIPYNPVAGLPYRTPSGAAIARFRAILESAGVNVNFRQRKGDEINAACGQ 359
Query: 365 LKSLSKRIPKVP 376
L+ +
Sbjct: 360 LRRNRGEVKATK 371
>gi|149924885|ref|ZP_01913219.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1]
gi|149814238|gb|EDM73847.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1]
Length = 382
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 154/372 (41%), Positives = 209/372 (56%), Gaps = 19/372 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +L GM REEL E L G R Q++ WI+ R DF M+++S+ R L
Sbjct: 21 DKPNLRGMSREELGEFL---GRELSAPAYRVDQVFGWIHQRRAPDFDAMTNLSKADRAKL 77
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVG 123
+ S+ E+ + + DGTRK LR IE+V IP RG T C+SSQVG
Sbjct: 78 RERASLDTLEVDTIQRARDGTRKLRLRT-----ADGEAIESVLIPNDERGLTQCISSQVG 132
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L C FC T + RNL EI+ QV AR+LL + E +I+NIV
Sbjct: 133 CALDCRFCATASLGFRRNLDTWEIVDQVARARTLLAEEAEREGARWTP------RITNIV 186
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLA 240
MGMGEPL NF+ V++SLSI +D+ G + + RRIT+STSG VP I R E V LA
Sbjct: 187 YMGMGEPLHNFNQVRRSLSILTDAGGEAIAGRRITVSTSGLVPAIERFAREGLGEEVGLA 246
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISL+A ++ +R+ ++PINRK+ ++ L+ A R S RR+TFEYV+L G+NDS DA
Sbjct: 247 ISLNATTDAVRDEVMPINRKWKIDELLAAVRR-VPTSRRRRVTFEYVLLGGVNDSDADAH 305
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI++++ +N+IPFNP Y Q + F ++RSG +RTPRG DI A
Sbjct: 306 RLIELVREFRCHVNVIPFNPHEHAPYRRPSQSRVRAFMAILRRSGVDVWLRTPRGDDIQA 365
Query: 361 ACGQLKSLSKRI 372
ACGQL +
Sbjct: 366 ACGQLALDDPKT 377
>gi|284032622|ref|YP_003382553.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836]
gi|283811915|gb|ADB33754.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836]
Length = 372
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 119/371 (32%), Positives = 178/371 (47%), Gaps = 27/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
L + EE A+ +G P R Q+ + R + D M+D+ R L
Sbjct: 20 RHLADLSGEERRAAVTALGEPA----FRAKQLSNHYFSRLVSDPAEMTDLPAASRDKLVA 75
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + ++ D + TRK L + +E+V + R T+CVSSQ GC
Sbjct: 76 ELMPPLLTKVRDLECDNGQTRKSLWKLL-----DGSLVESVLMRYTDRTTMCVSSQAGCG 130
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN+T EI+ QV+ L +++NIV M
Sbjct: 131 MACPFCATGQAGLTRNMTTAEIVEQVVDGARALSRGEIAGGPG---------RVNNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ V ++ +D GL S R IT+ST G VP I ++ E I V LA+S
Sbjct: 182 GMGEPMANYKAVIGAVRRFTDPSPEGLGISARGITVSTVGLVPRINQLAGEGIPVTLALS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVPIN ++ ++ ++DA Y + R++ EY M++ IND A L
Sbjct: 242 LHAPDDELRDELVPINNRWKVDEVLDAAWGYAQQTKR-RVSIEYAMIRDINDHAWRADLL 300
Query: 303 IKIL----KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
+ L +NLIP NP PG ++ SD D F ++ G + +R RG +I
Sbjct: 301 AEKLAARGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLQAGGIPTTVRDTRGQEI 360
Query: 359 LAACGQLKSLS 369
ACGQL + +
Sbjct: 361 DGACGQLAAAN 371
>gi|27904760|ref|NP_777886.1| hypothetical protein bbp265 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|46397192|sp|Q89AK8|RLMN_BUCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|27904157|gb|AAO26991.1| conserved hypothetical protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 373
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 153/377 (40%), Positives = 211/377 (55%), Gaps = 32/377 (8%)
Query: 1 MNFLK----------KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF 50
MN + K +L+ + +++ IG + R Q+ KWIY DF
Sbjct: 1 MNMINYECKMQKIKLKTNLLNFDLQSMKKFFCSIG----ELEFRAQQVMKWIYQHYCDDF 56
Query: 51 QGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110
M++IS ++R L+ I P+ ++ K+S DGT KW + G IETV IP+
Sbjct: 57 NKMTNISLQLRKKLSTLCCITPPKFLNHKVSVDGTMKWSVVI------GNQCIETVCIPK 110
Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
R TLC+SSQ+GCSL CSFC TG Q +NL EI+ QV + L+
Sbjct: 111 NQRTTLCISSQLGCSLACSFCLTGQQGFNKNLNVSEIIGQVWYIQKLI----------YF 160
Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
++ KI+N+V+MGMGEPL N NV +L I D GL+ SK ITLST+G VP + +
Sbjct: 161 SKINITNKITNVVLMGMGEPLLNLSNVVHALRIMLDEFGLNMSKNHITLSTAGIVPALKK 220
Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVM 288
+ I V LA+SLHA +N +RN L+PIN+KY +E ++ A + Y +N +R+T EYVM
Sbjct: 221 LHTMIDVSLAVSLHASNNTIRNQLMPINKKYNIESVLCAIKKYLYYSNANKKRVTIEYVM 280
Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
L GIND+ A L +LK IP KINLIP+N + G Y+CS+ I F+ + + G
Sbjct: 281 LSGINDAAYHAEELFNLLKSIPHKINLIPWNHFSGSNYICSNDITINNFANILIKKGCIV 340
Query: 349 PIRTPRGLDILAACGQL 365
IR RG DI AACGQL
Sbjct: 341 TIRKIRGYDINAACGQL 357
>gi|326334975|ref|ZP_08201175.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692780|gb|EGD34719.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 354
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 130/364 (35%), Positives = 205/364 (56%), Gaps = 25/364 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + +EEL+ L G R SQ+++W++ +G F M+++S+E R LL +
Sbjct: 13 KDIRALKKEELQAFFLAHG----EKAFRASQVYEWLWTKGAHSFDQMTNLSKETRTLLGE 68
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
HF I + ++ + S DGT K +R + +E+V IP +R T C+SSQVGCSL
Sbjct: 69 HFVINHIKVDTMQRSEDGTIKNAVRLH-----DGLYVESVLIPTDTRITACISSQVGCSL 123
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC T K +RNL+ +EI QVL + R + NIV MG
Sbjct: 124 NCTFCATARLKRMRNLSPDEIFDQVLTI-------------DQQSRLYYARPLRNIVFMG 170
Query: 187 MGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
MGEPL N+ NV K++ I S+ GL FS +RIT+STSG I ++ ++ LA+SLH
Sbjct: 171 MGEPLMNYPNVIKAIERITSEKEGLGFSPKRITVSTSGISKLIRKMADDRVKFKLAVSLH 230
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ RN ++P +PL L +A +++ + + RIT+EYV+ KG+ND+ +D L+
Sbjct: 231 SAIEQTRNCIMPWTVNFPLTELREALQYWYQHTKS-RITYEYVVWKGVNDTLKDIEALVA 289
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ P K+NLI +NP +L +D+K ++ + + ++ +G ++ IR RG DI AACGQ
Sbjct: 290 FCRFAPCKVNLIEYNPIDDGAFLQADEKILLLYKKKLEEAGITTTIRYSRGKDIDAACGQ 349
Query: 365 LKSL 368
L +
Sbjct: 350 LANK 353
>gi|56752343|ref|YP_173044.1| ribosomal RNA large subunit methyltransferase N [Synechococcus
elongatus PCC 6301]
gi|81561318|sp|Q5MZJ6|RLMN_SYNP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|56687302|dbj|BAD80524.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 351
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 191/372 (51%), Gaps = 37/372 (9%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
L+G EL++ ++ G P R Q+++W+Y R I + +S + R
Sbjct: 1 MTDATPLLGRSLPELQDWVVAQGQP----SYRAKQLYQWLYERSIHNLAEISVFPKAWRQ 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L Q + +IVD +S G+ K+LLR IE V IP R T+CVSSQ+
Sbjct: 57 SL-QAVPVGRSQIVDRSVSPSGSIKYLLRLH-----DGEIIEAVGIPSGDRLTVCVSSQL 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG R+L EI+ QVL + +++SNI
Sbjct: 111 GCAMACDFCATGKGGFRRHLAPHEIIDQVLTVQE-----------------DWQQRVSNI 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI------- 235
V MGMGEPL N D V ++ + +G+ +R IT+ST G +I R+ E
Sbjct: 154 VFMGMGEPLLNLDAVLAAIRCLNQDIGIG--QRGITVSTVGIPGHIRRLAETKRVGDRPL 211
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
LA+SLHA + +R+ L+P +R YP+ L+ CR Y ++ RR+TFEY++L G+ND
Sbjct: 212 QFTLAVSLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQIT-GRRVTFEYILLAGLNDQ 270
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
P A L ++L+G + +NLIP NP EY + + F++ +++ + +R +G
Sbjct: 271 PEQAEQLAQLLRGFQSHVNLIPCNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKG 330
Query: 356 LDILAACGQLKS 367
L AACGQL++
Sbjct: 331 LGADAACGQLRA 342
>gi|167750827|ref|ZP_02422954.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702]
gi|167656262|gb|EDS00392.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702]
gi|291530596|emb|CBK96181.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum 70/3]
Length = 338
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 120/369 (32%), Positives = 206/369 (55%), Gaps = 33/369 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K ++ + +EELEE +L +G + R QI+ W+++ + +F M+++S ++R
Sbjct: 1 MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L+ F I +I +S D T K+L ++ETV + K ++C+S+QV
Sbjct: 57 LDDIFWINSLKIQKRLVSDIDNTVKYLYGLS-----DGEKVETVLMEYKHGNSICISTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + VRNL E+LLQ+ + GRKI+++
Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V+MG+GEPL NFDNV K L + S S R +++ST G V I + + ++G+ L++
Sbjct: 155 VLMGIGEPLDNFDNVVKFLRLLSAKD--DMSLRHVSVSTCGLVNRIYELADLKLGITLSV 212
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +N+LR+ ++PIN ++ +E L++AC++Y + RRI++E+ ++ G+ND+ + A
Sbjct: 213 SLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSADA 271
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+K+LKG +NLIP N + S + + + + G ++ +R G DI AA
Sbjct: 272 LLKLLKGQNCHVNLIPVNEIKEGVFKRS--ASVEKYKQMLIDGGLNATVRRTLGADISAA 329
Query: 362 CGQLKSLSK 370
CGQL+ +K
Sbjct: 330 CGQLRRDNK 338
>gi|166363996|ref|YP_001656269.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843]
gi|205829811|sp|B0JT33|RLMN_MICAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|166086369|dbj|BAG01077.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843]
Length = 337
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 123/360 (34%), Positives = 184/360 (51%), Gaps = 31/360 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+ EEL + + G P R Q+ +W+Y +G+ +S QE R + +
Sbjct: 3 LLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKMAD-Y 57
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I ++ D TRK+LL+ + IE V IP + R T+CVSSQVGC + C
Sbjct: 58 PIGRSLIHYRSVAPDRTRKYLLKL-----ADGLIIEAVGIPSEKRLTVCVSSQVGCPMAC 112
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNL A EI+ QVL + +++S++V MGMG
Sbjct: 113 DFCATGKGGFTRNLKAHEIVDQVLTVQEDF-----------------QQRVSHVVFMGMG 155
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N V ++ + +G+ +R +T+ST G I ++ E + A+SLHA +
Sbjct: 156 EPLLNIPEVVTAIHCLNKDVGIG--QRCLTISTVGLPHKIKQLAEHNLQITFAVSLHASN 213
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+R L+P Y L LI C+ Y ++ RR+TFEY++L G+ND P A L K++K
Sbjct: 214 QQVRAKLIPSADHYLLSNLIQDCQEYVQIT-GRRVTFEYILLAGVNDLPEHARELAKLVK 272
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y D+K I F +++ + +R RGL AACGQL+S
Sbjct: 273 GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLATDAACGQLRS 332
>gi|162447121|ref|YP_001620253.1| radical SAM superfamily Fe-S oxidoreductase [Acholeplasma laidlawii
PG-8A]
gi|205829657|sp|A9NEU7|RLMN_ACHLI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|161985228|gb|ABX80877.1| Fe-S-cluster redox enzyme, radical SAM superfamily [Acholeplasma
laidlawii PG-8A]
Length = 338
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 129/362 (35%), Positives = 205/362 (56%), Gaps = 28/362 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + EELEE +++ G + R QIW W+Y + I F M++I +++ LLN ++
Sbjct: 3 IYDLTYEELEEFIVENGY----KKFRADQIWNWLYKQKIEAFSEMNNIPEDIIKLLNDNY 58
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ E V + S DGT K+L IETV + + CV++QVGC++ C
Sbjct: 59 TFAGLETVIKNTSADGTIKFLFDLKDAN-----LIETVLMSHNYGMSACVTTQVGCNIGC 113
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
SFC +G K R+LTA EI+ Q++ A G ++S+IV+MG+G
Sbjct: 114 SFCASGVLKKKRDLTAGEIVAQIIRAEK-----------------ESGVRVSSIVIMGIG 156
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
EP N+ N K +SI + GL+ R IT+STSG VP I I V LA+SLHA +
Sbjct: 157 EPFDNYKNFVKFISIVNHPKGLAIGARHITVSTSGLVPKIKEFAHLGIQVNLAVSLHAPN 216
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
N++R+ L+ IN ++ +E ++DA ++Y ++N R+T EY+M++ +NDS A+ L K+LK
Sbjct: 217 NEIRSKLMKINDRFKVEEVVDAIKYYIHVTNR-RVTIEYIMIQDLNDSVETAVELAKLLK 275
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G+ +NLIP+N +Y S ++ + F + +K ++ +R +G DI AACGQL+S
Sbjct: 276 GMNVYVNLIPYNTVKEADYQRSSLENRLAFHKTLKEHKITAILRKEQGHDINAACGQLRS 335
Query: 368 LS 369
+
Sbjct: 336 QN 337
>gi|302334811|ref|YP_003800018.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084]
gi|301318651|gb|ADK67138.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084]
Length = 359
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 119/371 (32%), Positives = 184/371 (49%), Gaps = 28/371 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ L M +L E L +G P R QI +W++ + + F MS++ + +R L
Sbjct: 16 QRRDLRAMSHGQLLELLGDLGQPG----FRAKQIEEWVWEKNVSSFDDMSNLPKSLRAHL 71
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+Q S+ P V + S DG+RK+LLR V +E V +P +++ +C S+Q GC
Sbjct: 72 SQACSLGGPREVGRQQSSDGSRKYLLR-----YEDGVSVECVGMPTRNKLAVCASTQAGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+++C+FC TG L R+LTA EI QV+ AR +++++V+
Sbjct: 127 AMSCAFCATGAAGLTRSLTAGEIYEQVMHARDDF-----------------NARVTSVVL 169
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEP N+D +L + G R +T+ST G +P I R E LA+SL
Sbjct: 170 MGQGEPFMNYDATLGALRRLNSPEGAGIGARHLTVSTCGIIPMIKRFAGEPEQFTLAVSL 229
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R++L+P RKY L L + Y + RR T+EY ++KG+NDS + L
Sbjct: 230 HSAVQRTRDMLMPGVRKYSLLHLYEIMEEYVDKT-GRRPTYEYALIKGVNDSEDEMGALC 288
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+G A +NLI N + S + F + G + IR RG DI AACG
Sbjct: 289 DFCRGNLAHVNLIRLNDVKDSPFQPSSDRRAEEFVRRLGAVGVDATIRNSRGSDIDAACG 348
Query: 364 QLKSLSKRIPK 374
QL+ +R+ +
Sbjct: 349 QLRQEMERLSR 359
>gi|257469926|ref|ZP_05634018.1| florfenicol resistance protein [Fusobacterium ulcerans ATCC 49185]
gi|317064156|ref|ZP_07928641.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
49185]
gi|313689832|gb|EFS26667.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
49185]
Length = 350
Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats.
Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 28/374 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + ++ELEE ++ +G+ + QI+ W++ + +RD ++++S + R
Sbjct: 1 MSEKINLLNLNQQELEELVISLGM----KKFYGKQIFNWLHQKIVRDLNEITNLSLKDRE 56
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSS 120
LL++ I + ++ +++S D T K+L + IETV + K R TLC+SS
Sbjct: 57 LLSEKAYIPFLNLLKQQVSKIDKTEKFLFKLE-----DGNTIETVLLRHKDKRNTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C+FC TG VRNL EI+ QV L G I+
Sbjct: 112 QVGCPVKCAFCATGQDGFVRNLDVNEIINQVYTVERRL--------------TKQGSNIN 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVML 239
NIV MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI + + E++ + L
Sbjct: 158 NIVFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIEL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLH+ N R++++P+NR YPLE L + Y + RI+FEY+M+ N S DA
Sbjct: 218 AISLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQTKR-RISFEYIMINDFNVSDIDA 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDI 358
L + +NLIP+NP G E+ +K I F +K + +R +G DI
Sbjct: 277 NALADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDI 336
Query: 359 LAACGQLKSLSKRI 372
ACGQL+ + +
Sbjct: 337 DGACGQLRQKAPKK 350
>gi|171909569|ref|ZP_02925039.1| YloN [Verrucomicrobium spinosum DSM 4136]
Length = 390
Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 191/368 (51%), Gaps = 26/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
SL+G+ EL L ++G R Q+ +W++ + + F MS++S+ ++ L
Sbjct: 24 PSLLGLQTAELGAILTELG----EKPYRVKQVQEWVFQKRVESFDAMSNLSKPLQEALAT 79
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE---TVYIPEKSRGTLCVSSQVG 123
++ + S D TRK+L + V I ++Y R TLCVSSQVG
Sbjct: 80 RLTLRSMTYARVEGSEDTTRKFLFKLYDGRFIETVLIPASPSLYGERSDRRTLCVSSQVG 139
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+ C FC +G RNLTA EI+ Q+L L G ++ N+V
Sbjct: 140 CAYDCKFCASGLAGFTRNLTAGEIVEQILQVEKL-----------------AGARVDNLV 182
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N NV +++ + + G++ R +T+STSG P I ++ + V LAIS
Sbjct: 183 FMGMGEPLANLTNVMRAIEVLNAQWGVNIGARHMTVSTSGLAPQIHKLADFPLQVRLAIS 242
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH SN++RN ++P+NRKYPLE L A Y +R+TFE++++ G+NDS A L
Sbjct: 243 LHGASNEVRNQIMPVNRKYPLEELFPAL-EYWNSKKKQRLTFEFILIDGVNDSLEQARLL 301
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ + AK+NLIP+N G ++ ++ TF + + + +R +G DI AAC
Sbjct: 302 GEHASRLDAKVNLIPYNTVEGLQWKRPSERRQDTFRDIVASHDVMTTLRREKGHDIAAAC 361
Query: 363 GQLKSLSK 370
GQL+ +
Sbjct: 362 GQLRLKQE 369
>gi|298490256|ref|YP_003720433.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
gi|298232174|gb|ADI63310.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
Length = 356
Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats.
Identities = 122/363 (33%), Positives = 189/363 (52%), Gaps = 31/363 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EL + + G P R Q+ WIY +G+R +S + R +
Sbjct: 24 LLGASVVELTAWVQEQGQPA----YRGKQLHDWIYDKGVRSLGDISVFPKSWREKVADV- 78
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I + ++ D T K+LL+ IETV IP R T+CVS+QVGC + C
Sbjct: 79 PIGRSSLHYRAVAPDDTVKYLLKL-----ADGEIIETVGIPSHKRLTVCVSTQVGCPMAC 133
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNL+ EI+ QVL + +++SN+V MG+G
Sbjct: 134 DFCATGKGGYKRNLSRGEIVDQVLTVQEDF-----------------QQRVSNVVFMGLG 176
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N +NV +L ++ +G+ +R +T+ST G I ++ + + LA+SLHA +
Sbjct: 177 EPLLNTENVILALKALNEDVGIG--QRSLTISTVGIRDRIHQLAQHHLQITLAVSLHAPN 234
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P + YP+E L++ CR Y ++ RR+TFEY++L G+ND P AL L K L+
Sbjct: 235 QALREQLIPSAKPYPIEDLLNECREYVEIT-GRRVTFEYILLAGVNDLPEQALELSKRLR 293
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y ++ I F +++ + +R RGL+ AACGQL++
Sbjct: 294 GFQSHVNLIPYNPIEEVDYKRPNRDRIQAFVNVLQQQNITVSVRYSRGLEADAACGQLRT 353
Query: 368 LSK 370
+
Sbjct: 354 SKR 356
>gi|291557812|emb|CBL34929.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a]
Length = 338
Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats.
Identities = 119/369 (32%), Positives = 205/369 (55%), Gaps = 33/369 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K ++ + +EELEE +L +G + R QI+ W+++ + +F M+++S ++R
Sbjct: 1 MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L+ F I +I +S D T K+L ++ETV + K ++C+S+QV
Sbjct: 57 LDDIFWINSLKIQKRLVSDIDNTVKYLYGLS-----DGEKVETVLMEYKHGNSICISTQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + VRNL E+LLQ+ + GRKI+++
Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V+MG+GEPL N DNV K L + S S R +++ST G V I + + ++G+ L++
Sbjct: 155 VLMGIGEPLDNLDNVVKFLRLLSAKD--DMSLRHVSVSTCGLVNRIYELADLKLGITLSV 212
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +N+LR+ ++PIN ++ +E L++AC++Y + RRI++E+ ++ G+ND+ + A
Sbjct: 213 SLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSADA 271
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+K+LKG +NLIP N + S + + + + G ++ +R G DI AA
Sbjct: 272 LLKLLKGQNCHVNLIPVNEIKEGVFKRS--ASVEKYKQMLIDGGLNATVRRTLGADISAA 329
Query: 362 CGQLKSLSK 370
CGQL+ +K
Sbjct: 330 CGQLRRDNK 338
>gi|328951573|ref|YP_004368908.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
Length = 353
Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats.
Identities = 132/338 (39%), Positives = 184/338 (54%), Gaps = 21/338 (6%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
R QI W+Y G+R+F M+D+ + +R L + I +V S DG+ K+L
Sbjct: 35 YRKRQIAHWLYAWGVREFDEMTDLPRALRAELAHTWRISEFSLVQAFPSADGSTKYLYTL 94
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
+ E VY+P K R T+C+SS VGC C+FC TG + RNLTA EIL Q+L
Sbjct: 95 H-----DGRQTEAVYMPYKDRRTICISSMVGCPAGCTFCATGQMRFGRNLTAPEILDQLL 149
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
A G P R+I N+V+MGMGEPL N NV K++ L+
Sbjct: 150 AAAYHQGISP--------------REIRNVVLMGMGEPLLNLTNVLKAVRRMIHKQALAM 195
Query: 213 SKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
S RRITLST G I R+ EE GV LA+SLHA ++ R ++P +Y +E ++DA R
Sbjct: 196 SPRRITLSTVGIPRGIYRLAEEDVGVKLALSLHAPDDETRRRIIPTAHRYAIEEIMDAVR 255
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
HY + R+T EY +L+G+ND A L K +G+ A +NLIPFNPW G + S +
Sbjct: 256 HYYRRTKR-RVTLEYTLLRGVNDHLWQAKMLAKHTRGLTAHVNLIPFNPWEGAPHEGSSR 314
Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+ I F+ ++ +G +R RG D+ AACGQL +
Sbjct: 315 EQIRRFAAVLEAAGIPVSVRWSRGRDVGAACGQLALRT 352
>gi|325268958|ref|ZP_08135579.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608]
gi|324988579|gb|EGC20541.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608]
Length = 350
Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats.
Identities = 128/370 (34%), Positives = 195/370 (52%), Gaps = 29/370 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K++L+GM EL+E +G+P QI KW+Y + +R M++IS+ R L
Sbjct: 5 KKNLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVRSIDEMTNISKANREKLA 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+++ + D + S DGT K+L + +ETVYIPE R TLCVSSQVGC
Sbjct: 61 AAYAVGCKDPTDAQYSKDGTVKYLFPTES-----GKFVETVYIPEDDRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q +LTA +IL QV K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLTATDILNQVYSL-------------------PERDKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
G GEP+ N DNV ++ I + G +S +RIT+S+ G + R EE +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRATEILTAGFGYGWSPKRITVSSVGVKGKLKRFLEESDCHVAISMHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R+ L+P R +E ++ +Y S+ RR++FEY++ KG+NDS A ++++
Sbjct: 217 PLHEQRSELMPAERGMSIESIVGLLANY-DFSHQRRLSFEYIVFKGVNDSEAHAKAIVRL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +INLI F+P P D + + F + + G + IR RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIFAACGLL 335
Query: 366 KSLSKRIPKV 375
+ ++ +
Sbjct: 336 STAKEKEERK 345
>gi|170077338|ref|YP_001733976.1| radical SAM protein [Synechococcus sp. PCC 7002]
gi|205829912|sp|B1XQH8|RLMN_SYNP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|169885007|gb|ACA98720.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7002]
Length = 346
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 124/365 (33%), Positives = 195/365 (53%), Gaps = 31/365 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EL + + G P R Q++ W+Y +GI D ++ + R + +
Sbjct: 6 LLGKSLPELTDWIETTGQPA----YRGKQLYNWLYQKGIHDLSEITVFPKAWREQMG-TY 60
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ +I ++ + DGTRK+LL+ + IETV IP + R T+CVSSQVGC++ C
Sbjct: 61 PVGRSQIHHQRTAPDGTRKYLLQLH-----DGLIIETVGIPTEKRLTVCVSSQVGCAMAC 115
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG R+L A EI+ QVL + +++S++V MGMG
Sbjct: 116 DFCATGKSGFTRHLQAHEIIDQVLTVQ-----------------TDFQQRVSHVVFMGMG 158
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N + V KS+ + +G+ +R +T+ST G I + ++ + LA+SLHA +
Sbjct: 159 EPLANLEQVLKSIQSLNQDIGIG--QRSLTVSTVGVPDQIRALAQQNLQITLAVSLHAPN 216
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR ++P YP+E L+D CR Y ++ RR++FEY++L G+ND P A L K LK
Sbjct: 217 QALRESIIPTAVHYPIEALLDECREYVAIT-RRRLSFEYILLAGVNDLPDHAAELAKKLK 275
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP + +K I F + ++ + +R +GL+ AACGQL+S
Sbjct: 276 GFQSHVNLIPYNPITEVPFQRPGKKRINVFKQILQDHKIAVSVRYSKGLEADAACGQLRS 335
Query: 368 LSKRI 372
+R
Sbjct: 336 NLRRS 340
>gi|15895003|ref|NP_348352.1| Fe-S-cluster redox protein [Clostridium acetobutylicum ATCC 824]
gi|81620134|sp|Q97IC4|RLMN_CLOAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|15024693|gb|AAK79692.1|AE007682_2 Predicted Fe-S-cluster redox enzyme, YLON B.subtilis ortholog
[Clostridium acetobutylicum ATCC 824]
gi|325509140|gb|ADZ20776.1| Fe-S-cluster redox enzyme [Clostridium acetobutylicum EA 2018]
Length = 345
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 128/364 (35%), Positives = 186/364 (51%), Gaps = 30/364 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ EL++ + K G R Q + WIY G DF+ M ++ Q R L ++
Sbjct: 3 NILDYNEAELKQWMDKNG----EKTFRAKQFFDWIY-NGTFDFKDMKNLPQSTRERLEKN 57
Query: 68 FSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I P +V S G K+L R IE V + ++C+S+QVGC +
Sbjct: 58 FYIGMPSVVKRLNSKKGDTVKFLFR-----YNDGNIIECVVMKYDYGNSICISTQVGCRM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC + VR+LT+ EIL Q+L A+ +G+ +ISNIV+MG
Sbjct: 113 GCSFCASTIGGRVRDLTSGEILAQILKAQKEIGE-----------------RISNIVLMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEPL N+DNV K + I + GL+ +R ITLST G VP I + +E + LAISLHA
Sbjct: 156 SGEPLDNYDNVIKFIRIVNSEKGLNIGQRHITLSTCGIVPRIYDLMKENLQITLAISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R ++PI +Y + +ID C+ Y + RRITFEY ++K +ND A L ++
Sbjct: 216 SDDETRKKIMPIANRYSISEIIDCCKKYSDFT-GRRITFEYSLVKDVNDDKESAKKLGEL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L G+ +NLIP N Y + I F + + + S IR G DI AACGQL
Sbjct: 275 LSGMLCHVNLIPVNTVNETSYEKPESSKIKKFCDTLLKYKIESTIRKEMGADINAACGQL 334
Query: 366 KSLS 369
+
Sbjct: 335 RRNY 338
>gi|323141165|ref|ZP_08076066.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT
12067]
gi|322414308|gb|EFY05126.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT
12067]
Length = 351
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 201/374 (53%), Gaps = 28/374 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + EEL++ + G+ + R Q+++W+Y + + DF M ++S+ +L +
Sbjct: 2 QDIFALPIEELQDLFVAAGL----KKFRAKQVFQWLYQKSVFDFTAMHNLSKADIAVLQE 57
Query: 67 HFSIIY--PEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
F+++ EI+ E+ S T K LL P +ETV + ++CVSSQVG
Sbjct: 58 KFTVLPHSLEILREQNSSDGMTSKLLLGLP-----DGNSVETVLMHHDYGYSVCVSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C+FC +G + VRNLTA EI+ QV L L + G +S +V
Sbjct: 113 CDMHCAFCASGLKGAVRNLTAAEIVAQVYLFNERLRE--------------QGAMVSRVV 158
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
+MG GEP+ NFD+V ++L + S R +T+ST G +P I R+ E+ + LAIS
Sbjct: 159 VMGSGEPMLNFDSVLQALDFLHREDTCNMSYRNMTISTCGIIPGIKRLEEQGNPINLAIS 218
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV N+LR L+P+N+ YP ++ A Y S + IT+EY++LKG NDSP+DA L
Sbjct: 219 LHAVKNELRTALMPVNKGYPFVDVLTAAESYSKASGRQ-ITYEYILLKGKNDSPQDAELL 277
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
L+ A +NLIP NP P + + + F ++++ ++ +R G DI AAC
Sbjct: 278 SNYLRYKQASVNLIPANPVPEQGFERPSKAAVERFLRILQKNRINATVRKEMGKDIDAAC 337
Query: 363 GQLKSLSKRIPKVP 376
GQL++ + +
Sbjct: 338 GQLRAKFAKEQEQK 351
>gi|289706145|ref|ZP_06502515.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58]
gi|289557139|gb|EFD50460.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58]
Length = 465
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 113/369 (30%), Positives = 180/369 (48%), Gaps = 19/369 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E +E +IG+P R Q+ + D + M+D+ ++ R + +
Sbjct: 106 THLADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAE 161
Query: 67 HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V + G K+L R +E+V + R TLCVSSQ GC
Sbjct: 162 AFFPPLLTEVRRMETDRGDTVKFLWRL-----FDGALVESVLMRYPGRVTLCVSSQAGCG 216
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EI+ Q++LA ++ + + +++N+V M
Sbjct: 217 MNCPFCATGQAGLTRNMSTAEIVEQIVLANQVIAAGGLGGKRKDGGHDAD--RVTNVVFM 274
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ GL S R ITLST G VP I ++ EE + + A+S
Sbjct: 275 GMGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALS 334
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ L+P+N ++ + IDA Y ++ RR++ EY ++K +ND A L
Sbjct: 335 LHAPDDELRDELIPVNSRWKADEAIDAAYDYF-VATGRRVSIEYALIKDMNDHAWRADLL 393
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L +N IP NP PG + S++ F + + +G + +R RG +I
Sbjct: 394 AKKLNARGKGWVHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453
Query: 360 AACGQLKSL 368
ACGQL +
Sbjct: 454 GACGQLAAE 462
>gi|239918594|ref|YP_002958152.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665]
gi|281415191|ref|ZP_06246933.1| ribosomal RNA large subunit methyltransferase N [Micrococcus luteus
NCTC 2665]
gi|239839801|gb|ACS31598.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665]
Length = 465
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 113/369 (30%), Positives = 180/369 (48%), Gaps = 19/369 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E +E +IG+P R Q+ + D + M+D+ ++ R + +
Sbjct: 106 THLADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAE 161
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V + T K+L R +E+V + R TLCVSSQ GC
Sbjct: 162 AFFPPLLTEVRRMETDRGDTIKFLWRL-----FDGALVESVLMRYPGRVTLCVSSQAGCG 216
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EI+ Q++LA ++ + + +++N+V M
Sbjct: 217 MNCPFCATGQAGLTRNMSTAEIVEQIVLANQVIAQGGLGGKRKDGGHDAD--RVTNVVFM 274
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ GL S R ITLST G VP I ++ EE + + A+S
Sbjct: 275 GMGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALS 334
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ L+P+N ++ + IDA Y ++ RR++ EY ++K +ND A L
Sbjct: 335 LHAPDDELRDELIPVNSRWKADEAIDAAYDYF-VATGRRVSIEYALIKDMNDHAWRADLL 393
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L +N IP NP PG + S++ F + + +G + +R RG +I
Sbjct: 394 AKKLNARGKGWVHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453
Query: 360 AACGQLKSL 368
ACGQL +
Sbjct: 454 GACGQLAAE 462
>gi|317475867|ref|ZP_07935124.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA]
gi|316908027|gb|EFV29724.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA]
Length = 345
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 29/371 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+G+ EL+ + +G+P QI W+Y + + M+++S + R LL
Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRELLK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + VD S DGT K+L R G +E VYIPE+ R TLCVSSQVGC
Sbjct: 58 DIYEVGGEAPVDAMRSVDGTVKYLYRV-----GEGHYVEAVYIPEEDRATLCVSSQVGCK 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLTA +I+ Q+ K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------------------NSLPERDKLTNVVMM 153
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N D V K+L + + S G +S +R+TLS+ G + R EE LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+
Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ +INLI F+ PG + +D + + + + G + IR RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332
Query: 366 KSLSKRIPKVP 376
+ + K
Sbjct: 333 STAKQEGNKEE 343
>gi|253584157|ref|ZP_04861355.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
Length = 350
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 135/374 (36%), Positives = 204/374 (54%), Gaps = 28/374 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + ++ELEE ++ +G+ + QI+ W++ + +RD ++++S + R
Sbjct: 1 MSEKINLLNLNQQELEELVISLGM----KKFYGKQIFNWLHQKIVRDINEITNLSLKDRE 56
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSS 120
LL + I + ++ ++IS D T K+L + IETV + K R TLC+SS
Sbjct: 57 LLAEKTYIPFLNLLKQQISKIDKTEKFLFKLE-----DGNTIETVLLRHKDKRNTLCISS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C+FC TG VRNL EI+ QV L G I+
Sbjct: 112 QVGCPVKCAFCATGQDGFVRNLDVNEIINQVYTVERRL--------------VKQGSNIN 157
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVML 239
NIV MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI + + E++ + L
Sbjct: 158 NIVFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIEL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLH+ N R++++P+NR YPLE L + Y + RI+FEY+M+ N S DA
Sbjct: 218 AISLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQTKR-RISFEYIMINEFNVSDVDA 276
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDI 358
L + +NLIP+NP G E+ +K I F +K + +R +G DI
Sbjct: 277 NALADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDI 336
Query: 359 LAACGQLKSLSKRI 372
ACGQL+ + +
Sbjct: 337 DGACGQLRQKAPKK 350
>gi|198275963|ref|ZP_03208494.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135]
gi|198271592|gb|EDY95862.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135]
Length = 351
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 124/376 (32%), Positives = 193/376 (51%), Gaps = 29/376 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K L+G EL+ + +G+P + QI W+Y + + + M+++S + R
Sbjct: 1 MTTKTPLLGKTLNELKTIVQDLGMP----KFTAGQIASWLYDKKVGSIEEMTNLSLKNRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L +++ + V E S DGT K+L P IE+VYIP+ R TLCVSSQV
Sbjct: 57 RLMENYEVGASAPVHEVRSVDGTVKYLFCTP-----EGDYIESVYIPDDDRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q +LTA +IL Q+ ++N+
Sbjct: 112 GCKMNCKFCMTGKQGYTTSLTAAQILNQIYSV-------------------PERDTLTNV 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEP N D V ++L I + G +S +RIT+ST G + R EE LAIS
Sbjct: 153 VFMGMGEPFDNLDEVLRALEILTADYGYKWSPKRITVSTVGLRKGLERFLEESDCHLAIS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ R L+P + + + +++ R Y S RR++FEY++ KG+NDS A L
Sbjct: 213 LHSPFPSQRRELMPAEKAFSITEMVEILRRY-DFSKQRRLSFEYIVFKGVNDSLIYAKEL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K+L+G+ ++NLI F+ P + +D + ++ F + + + G + IR RG DI AAC
Sbjct: 272 VKLLRGLDCRMNLIRFHAIPNVDLEGTDMESMIAFRDYLTQHGLFATIRASRGEDIFAAC 331
Query: 363 GQLKSLSKRIPKVPRQ 378
G L + ++ K ++
Sbjct: 332 GMLSTAQQQAEKKEKE 347
>gi|300780939|ref|ZP_07090793.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC
33030]
gi|300532646|gb|EFK53707.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC
33030]
Length = 377
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 116/376 (30%), Positives = 187/376 (49%), Gaps = 31/376 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + + EE EAL ++G+P + R QI + Y R D M+D+ R L
Sbjct: 20 MPPKHFADLSEEERIEALGELGLP----KFRADQIARHYYGRFEADPSTMTDLPAAQREL 75
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ V + + + T K L R + +E+V + R TLC+SSQ
Sbjct: 76 VKDSLFPRLLTPVRKVETDNGDTTKTLWRLH-----DGILLESVLMRYPGRATLCISSQA 130
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A +++ + G +++N+
Sbjct: 131 GCGMACPFCATGQGGLDRNLSTAEIVDQVREAAAMM--------------EAEGSRLTNV 176
Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N++ V ++ G S+R +T+ST G P I ++ +E V L
Sbjct: 177 VFMGMGEPLANYNRVVSAVRQIVSPAPHGFGISQRNVTVSTVGLAPAIRKLADEGLSVTL 236
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ ++ ++DA R+Y + RR++ EY +++ IND A
Sbjct: 237 AVSLHTPDDELRDELVPMNNRFTVQDVLDAARYYADQT-GRRVSIEYALIRDINDHDFRA 295
Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L + L +NLIP NP PG ++ S ++ F + G + +R +G
Sbjct: 296 DMLGQKLHDALGPLVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVTCTVRDTKGQ 355
Query: 357 DILAACGQLKSLSKRI 372
+I AACGQL + K+
Sbjct: 356 EIAAACGQLAADEKQA 371
>gi|253828191|ref|ZP_04871076.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491]
gi|253511597|gb|EES90256.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491]
Length = 346
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 135/367 (36%), Positives = 199/367 (54%), Gaps = 26/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+++ G L ++L + R QI+ W+YV DF+ M ++ + +R
Sbjct: 1 MDKQNVFGFTLNSLSDSLKDF------PKFRAKQIYHWLYVHYENDFEKMENLPKNLREF 54
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++F EI ++ S DG+ K+L + V ++ ++ + TLC+SSQVG
Sbjct: 55 LKENFISNAVEIAKKEQSSDGSVKYLFKTADNLTYEAVFLKM----KEDKFTLCLSSQVG 110
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + CSFC T VRNL A E++ QV + K NIV
Sbjct: 111 CKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIKKD--------------QNIPSNKAVNIV 156
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++ ++GV LAIS
Sbjct: 157 YMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAIS 216
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LR L+PIN+ Y ++ +ID +P + + +R+ FEY+M+ GINDS A L
Sbjct: 217 LHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKKL 275
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +L I AK+NLI FNP G Y ++ + F E + + G IR +GLDI AAC
Sbjct: 276 VALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAAC 335
Query: 363 GQLKSLS 369
GQL+
Sbjct: 336 GQLREKE 342
>gi|332981566|ref|YP_004463007.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1
BON]
gi|332699244|gb|AEE96185.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1
BON]
Length = 344
Score = 322 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 30/363 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L M +++ + + ++G P R QI+ W+Y +G+ D MSD+ + R L +
Sbjct: 7 LKDMSMDDMSKLVQQLGQPA----YRAQQIFSWVY-KGVDDIDEMSDLPADFRKRLKERC 61
Query: 69 SIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I + S K+L IE+V + + ++CVSSQVGC +
Sbjct: 62 YTDSCRIYKRQQSEDGSAIKYLFLLK-----DGNIIESVLMLYEYGNSVCVSSQVGCRMG 116
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC + + + RNLT E++ Q+L + + GRKIS++V+MG
Sbjct: 117 CAFCASTIKGIKRNLTKGEMVDQILRIQQDV-----------------GRKISHVVLMGS 159
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
GEPL N++ + + + GL+ S R +TLST G VP I + +E + + LA+SLHA
Sbjct: 160 GEPLDNYEQSIAFMRLLHEPKGLNISYRNMTLSTCGLVPRIYDLAKEGMPITLAVSLHAP 219
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++D+R L+P+++ Y ++ +I AC +Y + RR+TFEY+MLK IND A L +L
Sbjct: 220 NDDIRRQLIPMSKVYSIDDIIKACNYYIEKT-GRRVTFEYIMLKDINDRVEHAYMLADVL 278
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KG+ +NLIPFN GCE+ S QK I F + + G IR G DI AACGQL+
Sbjct: 279 KGMICHVNLIPFNNVEGCEFQPSSQKQIEHFYGILNKKGIPVSIRRRLGTDIDAACGQLR 338
Query: 367 SLS 369
Sbjct: 339 RRF 341
>gi|226306037|ref|YP_002765997.1| rRNA methyltransferase [Rhodococcus erythropolis PR4]
gi|259491995|sp|C0ZY23|RLMN_RHOE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|226185154|dbj|BAH33258.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4]
Length = 369
Score = 322 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 179/372 (48%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + E +EA+ ++G+P R Q+ + Y R D + M+D+ VR
Sbjct: 16 MPPRHLADLDSAERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREK 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + + G + L +E+V + R TLC+SSQ G
Sbjct: 72 VGESLFPTLLTPIKHLACDSGDTRKTL----WKAHDGTLLESVLMRYPDRATLCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + + D ++SN+V
Sbjct: 128 CGMACPFCATGQGGLDRNLSTAEIVDQVREAAAAMRDGDVAGGPG---------RLSNVV 178
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V ++ GL S+R +T+ST G P I ++ +E V LA
Sbjct: 179 FMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEGLSVTLA 238
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ + ++ A R+Y + RR++ EY M+K +ND P A
Sbjct: 239 VSLHTPDDELRDTLVPVNNRWSVSEVLQAARYYADKT-GRRVSIEYAMIKNVNDQPWRAD 297
Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K LK +NLIP NP PG E+ S + F + G S +R RG +
Sbjct: 298 MLGKKLKKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQE 357
Query: 358 ILAACGQLKSLS 369
I AACGQL + +
Sbjct: 358 IAAACGQLAAEN 369
>gi|229491476|ref|ZP_04385300.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121]
gi|229321761|gb|EEN87558.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121]
Length = 369
Score = 322 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 179/372 (48%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + E +EA+ ++G+P R Q+ + Y R D + M+D+ VR
Sbjct: 16 MPPRHLADLDSAERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREK 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + + G + L +E+V + R TLC+SSQ G
Sbjct: 72 VGESLFPTLLTPIKHLACDSGDTRKTL----WKAHDGTLLESVLMRYPDRATLCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + + D ++SN+V
Sbjct: 128 CGMACPFCATGQGGLDRNLSTAEIVDQVREAAAAMRDGEVAGGPG---------RLSNVV 178
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V ++ GL S+R +T+ST G P I ++ +E V LA
Sbjct: 179 FMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEGLSVTLA 238
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ + ++ A R+Y + RR++ EY M+K +ND P A
Sbjct: 239 VSLHTPDDELRDTLVPVNNRWSVSEVLQAARYYADKT-GRRVSIEYAMIKNVNDQPWRAD 297
Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K LK +NLIP NP PG E+ S + F + G S +R RG +
Sbjct: 298 MLGKKLKKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQE 357
Query: 358 ILAACGQLKSLS 369
I AACGQL + +
Sbjct: 358 IAAACGQLAAEN 369
>gi|255693933|ref|ZP_05417608.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565]
gi|260620244|gb|EEX43115.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565]
Length = 344
Score = 322 bits (824), Expect = 9e-86, Method: Composition-based stats.
Identities = 132/367 (35%), Positives = 195/367 (53%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ ++G+P QI W+Y + + M+++S + R L
Sbjct: 1 MSKYPLLGMTLVELQALAKRLGMP----SFAAKQIASWLYEKKVTSIDEMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q++ + VDE S DGT K+L R G +E+VYIP+ R TLCVSSQVG
Sbjct: 57 LKQNYEVGVFPPVDEMRSVDGTVKYLYRV-----GDNHFVESVYIPDDDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------HSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L + + G ++S +RITLST G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALEVLTAPYGYAWSPKRITLSTVGLRKGLRRFIEESDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPVAAQRSELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQIYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ +INLI F+ PG +D + F + + G + IR RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVNLEGADMDTMTRFRDYLTSHGLFTTIRASRGEDIFAACG 331
Query: 364 QLKSLSK 370
L + +
Sbjct: 332 MLSTAKQ 338
>gi|15605915|ref|NP_213292.1| hypothetical protein aq_416 [Aquifex aeolicus VF5]
gi|81556300|sp|O66732|RLMN_AQUAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|2983096|gb|AAC06702.1| hypothetical protein aq_416 [Aquifex aeolicus VF5]
Length = 348
Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats.
Identities = 136/370 (36%), Positives = 209/370 (56%), Gaps = 32/370 (8%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
EEL++ ++G+ R Q+++W+Y + + DF+ M+D+ ++ R LL +HF+
Sbjct: 6 NYTLEELKKRFTELGLE----PYRAKQVFRWVYKKFVTDFEKMTDLGKKHRELLKEHFAF 61
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
E +D + K+L + +ETV I E+ TLCVSSQ+GC++ C+F
Sbjct: 62 HPLEKLDRVEA-PDAVKYLFKTK-----DGHILETVLIKERDHYTLCVSSQIGCAVGCTF 115
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C T L RNL+ EI+ Q L + LG+ KI N+V MGMGEP
Sbjct: 116 CATALDGLKRNLSTAEIIDQYLQVQQDLGE----------------EKIRNVVFMGMGEP 159
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---MLAISLHAVS 247
L N++NV+K++ I GL SKRRIT+STSG V I R+ ++ + LA+SL+AVS
Sbjct: 160 LANYENVRKAVEIMVSPEGLDLSKRRITISTSGIVAQIKRMAQDPVMKEVNLAVSLNAVS 219
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL- 306
R L+P+ + LE L++ ++YP L RRIT EYV++KG+NDSP DA L K++
Sbjct: 220 QKKREELMPLTKTNTLEELMEVLKNYP-LPKYRRITLEYVLIKGVNDSPNDAERLAKLIG 278
Query: 307 -KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
K+NLIPFNP P Y DI+ F + + + G S+ +R +G+++ ACGQL
Sbjct: 279 RHKKKFKVNLIPFNPDPNLPYERPALTDIMKFQKVLWKYGISNFVRFSKGVEVFGACGQL 338
Query: 366 KSLSKRIPKV 375
++ ++ +V
Sbjct: 339 RTQRLQLQRV 348
>gi|188585964|ref|YP_001917509.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|205829820|sp|B2A2K6|RLMN_NATTJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|179350651|gb|ACB84921.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 351
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 194/369 (52%), Gaps = 25/369 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+SL + EL+E + G + R QI+ W+Y++ + + MS+I +++R L
Sbjct: 5 KQSLKDLTLNELQEYFSRKGW----QQFRAKQIFDWMYIQQVDSIEVMSNIPKKLRQELM 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ +I E+ I T + + +ET + T+C+SSQ GC+
Sbjct: 61 ENCTINDLELDSNNIYTSPTDGTIKFLSVLK--DGIGVETTIMKYDYGNTVCISSQAGCN 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + T R+L+ E++ QVL+A +L I+NIV+M
Sbjct: 119 MNCVFCASTTGGKERDLSPGEMIDQVLMANKVL---------------PGSESINNIVVM 163
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+ ++ K L I +D GL+ R IT+ST G VP I + EE + LAISLH
Sbjct: 164 GSGEPLENYQHLIKFLKIVNDGKGLNIGMRHITVSTCGLVPEIYNLAEEELQLNLAISLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LRN L+P+N+ YP+ L++AC+ Y + RRITFEYV++K NDS A L +
Sbjct: 224 APNDELRNKLIPLNKIYPIHELLEACQVYFQKT-GRRITFEYVLIKDFNDSIDLAKELSE 282
Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
L + P +NLIPFNP ++ I F ++ + +R RG+D+ AC
Sbjct: 283 TLTALKMPVHVNLIPFNPVEETKFTAPPSSRISDFKNNLQSNNIGVTVRKERGVDVDGAC 342
Query: 363 GQLKSLSKR 371
GQL+S R
Sbjct: 343 GQLRSKVMR 351
>gi|333031476|ref|ZP_08459537.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
coprosuis DSM 18011]
gi|332742073|gb|EGJ72555.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
coprosuis DSM 18011]
Length = 344
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 130/374 (34%), Positives = 196/374 (52%), Gaps = 30/374 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + K+ L+GM EL+ + + G+P + QI W+Y + + + M+++S++
Sbjct: 1 MN-MDKKPLLGMTLSELQVLVSQAGLP----KFTAKQIASWLYKKKVTNIDEMTNLSKKN 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LLNQ +++ + S DGT K+L G IE+VYIP++ R TLCVSS
Sbjct: 56 RDLLNQEYTVGAANPIQAVKSVDGTIKYLFSV-----GDKNSIESVYIPDEDRATLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG Q NL+A +IL Q+ ++
Sbjct: 111 QVGCKMNCLFCMTGKQGFSGNLSANQILNQIQTI-------------------PESDTLT 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIV MGMGEP+ N D V K L I + G +S +RIT+ST G R +E LA
Sbjct: 152 NIVFMGMGEPMDNLDEVLKVLEILTSDYGYKWSPKRITVSTVGVRKGFERFLQESDCHLA 211
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+S+H R L+P + P+ +++ R Y S RR++FEY+M KG+NDS A
Sbjct: 212 VSIHTPIASQRKDLMPAEKGLPISEIVNILRDY-DFSKQRRLSFEYIMFKGVNDSISHAK 270
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+++L G+ ++NLI F+ P + SD + + F + + ++G + IR RG DI A
Sbjct: 271 KLLELLDGLECRVNLIRFHAIPNVDLNGSDMETMTVFRDYLTKNGVFTTIRASRGEDIFA 330
Query: 361 ACGQLKSLSKRIPK 374
ACG L ++ K K
Sbjct: 331 ACGMLSTMEKNKNK 344
>gi|315607782|ref|ZP_07882775.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574]
gi|315250251|gb|EFU30247.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574]
Length = 358
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 132/385 (34%), Positives = 205/385 (53%), Gaps = 32/385 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K SL+G+ EL++ ++G+P Q+ KW+Y + ++ M++IS+
Sbjct: 1 MNT--KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKAN 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGT 115
R L H++I +DE+ S DGT K+L +G E +ETVYIP+K R T
Sbjct: 55 REKLAGHYTIGCAAPIDEQRSKDGTVKYLFPVTTTAVGENREAPVKFVETVYIPDKDRAT 114
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVS QVGC + C FC TG Q NL+ +IL QV
Sbjct: 115 LCVSCQVGCKMNCLFCQTGKQGFEGNLSVADILNQVYSL-------------------PE 155
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
K++NIV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R EE
Sbjct: 156 VDKLTNIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEES 215
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+AIS+H+ + R L+P R +E +++ ++Y S+ RR++FEY++ G+NDS
Sbjct: 216 DCHVAISMHSPLPEQRAELMPAQRGMGIEEVVELLKNY-DFSHQRRLSFEYIVFGGVNDS 274
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A ++++LKG+ +INLI F+ PG +++K + + + G + IR RG
Sbjct: 275 NAHAREIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRG 334
Query: 356 LDILAACGQLKSLSKRIPKVPRQEM 380
DI AACG L S SK+I ++ +
Sbjct: 335 EDIFAACGLL-STSKKIEELRSKTS 358
>gi|308178831|ref|YP_003918237.1| radical SAM enzyme [Arthrobacter arilaitensis Re117]
gi|307746294|emb|CBT77266.1| radical SAM enzyme [Arthrobacter arilaitensis Re117]
Length = 377
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 112/372 (30%), Positives = 172/372 (46%), Gaps = 23/372 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E + L ++G+P R Q+ + D + MSD+ +E R L +
Sbjct: 22 THLADLSLAERQAKLKELGLPA----FRAKQLSVHYFQHYTTDPEKMSDLPKERRAELAE 77
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + T K+L R +E+V + R TLC+SSQ GC
Sbjct: 78 AMFPKLLTEVKRLETDDGKTIKFLWRL-----FDGSLVESVLMRYPGRITLCISSQCGCG 132
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EIL Q++ A ++ + ++ NIV M
Sbjct: 133 MNCPFCATGQAGLTRNMSTAEILDQIVQANRVIAEGGLGGR------QHPDERVGNIVFM 186
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V ++ GL + R IT+ST G VP I ++ EE V A+S
Sbjct: 187 GMGEPLANYKRVMNAVHRMVADTPEGLGMAARGITVSTVGLVPAIRKLTEENVQVTFALS 246
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ L+P+N ++ ++ +DA Y + RR++ EY ++K +ND A L
Sbjct: 247 LHAPDDELRDELIPVNSRWKVDEALDAAYDYY-VKTGRRVSIEYALIKDMNDHEWRAEML 305
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L +N IP NP PG + S+ F + G + +R RG +I
Sbjct: 306 AKKLNARGRGWVHVNPIPLNPVPGSIWTRSEPDITSKFVRRLDELGVPTTLRDTRGKEID 365
Query: 360 AACGQLKSLSKR 371
ACGQL + +
Sbjct: 366 GACGQLAADGDK 377
>gi|307297434|ref|ZP_07577240.1| radical SAM enzyme, Cfr family [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306916694|gb|EFN47076.1| radical SAM enzyme, Cfr family [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 339
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 29/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++ + +EL ++ G R +QI+KW+Y + + DF M+D+ +R+ L
Sbjct: 2 KDILSLDLDELRREIISFG----EKDYRANQIFKWVYAKRVLDFSEMTDLPMNLRNKLGS 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + V+ +IS DGT K+LL+ IETV + T C+SSQVGC+L
Sbjct: 58 LFRFTTMKEVERQISIDGTEKFLLKLEDDNH-----IETVVLKHPRHVTFCISSQVGCAL 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG R+L+A EI+ QV+L + + GR + NIV MG
Sbjct: 113 NCSFCATGASGFTRDLSASEIVSQVILMENSI-----------------GRPVDNIVFMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
MGEP N NV K++ I D +G + R T+ST+G I R+ + + V L++SLH+
Sbjct: 156 MGEPFLNEANVYKAIKILHDPVGRNLGIRHFTISTAGIPEGIKRLADSGMDVRLSVSLHS 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
S + R+ L+PIN+KYPL+ L +Y + RITFEY ++KG+NDS D L +
Sbjct: 216 ASEETRSSLMPINKKYPLDSLRKVLDYYQQKT-GNRITFEYALIKGVNDSKEDLTKLGEF 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L GI + +N+IP NP + ++I FSE +K++G+ +R +G DI AACGQL
Sbjct: 275 LTGIKSFVNIIPVNPVKPV-FDRPSDREIAVFSESLKKAGFECAVRHEKGTDIEAACGQL 333
Query: 366 KSLSK 370
+ +
Sbjct: 334 RQKRR 338
>gi|312139245|ref|YP_004006581.1| radical sam protein [Rhodococcus equi 103S]
gi|311888584|emb|CBH47896.1| radical SAM protein [Rhodococcus equi 103S]
Length = 369
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 184/372 (49%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + +E +EA+ ++G+P R Q+ + Y R D M+D+ +R
Sbjct: 16 MPPRHLADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREK 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ ++V G + L +E+V + R TLC+SSQ G
Sbjct: 72 VGAALFPRLLDVVKHVACDAGQTRKTL----WKANDGTLLESVLMRYPDRATLCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + L D ++SNIV
Sbjct: 128 CGMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRDGEVEGGPG---------RLSNIV 178
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
MGMGEPL N+ V ++ GL S+R +T+ST G P I ++ +E + V LA
Sbjct: 179 FMGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVRLA 238
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND P A
Sbjct: 239 VSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQPWRAD 297
Query: 301 NLIK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K + K + +NLIP NP PG ++ S + F ++ G S +R RG +
Sbjct: 298 MLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRGQE 357
Query: 358 ILAACGQLKSLS 369
I AACGQL + +
Sbjct: 358 IAAACGQLAAEN 369
>gi|332670033|ref|YP_004453041.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484]
gi|332339071|gb|AEE45654.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484]
Length = 374
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 110/371 (29%), Positives = 173/371 (46%), Gaps = 26/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + E+ A+ ++G R Q+ + D M+D+ + R L +
Sbjct: 23 KHFVDLTPEQRVAAVTELG----EKPFRAKQLATHYFTHLTSDPAAMTDLPKATRDKLVE 78
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ T K L ++E+V + +R TLC+SSQ GC
Sbjct: 79 GLFPTLLTAHRTLTADQGTTVKTLWHL-----FDGAKVESVLMRYANRTTLCISSQAGCG 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC TG L RNL+ EI+ QV A L D +P +++N+V M
Sbjct: 134 LACAFCATGQLGLTRNLSTAEIVEQVRAAARSLAD---------GEVPGGPTRLTNVVFM 184
Query: 186 GMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V +++ A GL S R +T+ST G VP + ++ E I V LA+S
Sbjct: 185 GMGEPLANYKAVMETVRRLVAPTPDGLGMSARNVTVSTVGMVPAMDKLANEGIPVTLALS 244
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ ++ ID+ Y + RR++ EY +++ +ND A L
Sbjct: 245 LHAPDDELRSELVPVNTRWSVDEAIDSAHRYFEKT-GRRVSIEYALIRDVNDHAWRADLL 303
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L N IP NP P + SD + F ++ G + +R RG +I
Sbjct: 304 GEKLAARGTGWVHCNPIPLNPVPNSRWTASDPQVEREFVARLRAHGIPTTVRDTRGSEID 363
Query: 360 AACGQLKSLSK 370
ACGQL +
Sbjct: 364 GACGQLAAEED 374
>gi|218129787|ref|ZP_03458591.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697]
gi|217987897|gb|EEC54222.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697]
Length = 345
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 29/371 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+G+ EL+ + +G+P QI W+Y + + M+++S + R LL
Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRDLLK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + VD S DGT K+L R G +E VYIPE+ R TLCVSSQVGC
Sbjct: 58 DIYEVGGEAPVDAMRSVDGTVKYLYRV-----GEGHYVEAVYIPEEDRATLCVSSQVGCK 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLTA +I+ Q+ K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------------------NSLPERDKLTNVVMM 153
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N D V K+L + + S G +S +R+TLS+ G + R EE LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+
Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ +INLI F+ PG + +D + + + + G + IR RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332
Query: 366 KSLSKRIPKVP 376
+ + K
Sbjct: 333 STAKQEGNKEE 343
>gi|310778596|ref|YP_003966929.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
2926]
gi|309747919|gb|ADO82581.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
2926]
Length = 349
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 140/360 (38%), Positives = 201/360 (55%), Gaps = 26/360 (7%)
Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
+ELE+ ++ IG+ + QI+ W++ + IR+ M++IS++ R LL I +
Sbjct: 13 KELEDFIVSIGM----KKFNGKQIFDWLHGKIIRNIDDMTNISKKNRELLQSKSYIPFLN 68
Query: 75 IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
+V K S D T K++ + IETV + K R TLC+SSQVGC + CSFC T
Sbjct: 69 VVKHKTSKIDYTEKFVFKLE-----DGNTIETVLLKHKERNTLCISSQVGCPVKCSFCAT 123
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G VRNL EIL QV + S G+ I+N+V MGMGEP+ N
Sbjct: 124 GLDGFVRNLNVHEILNQVYTVQRRF-------------FKSEGKNITNVVFMGMGEPMLN 170
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
+NV K++ I SD G++ SKRRIT+STSG +P I ++ +E I V LAISLHA++N+ R+
Sbjct: 171 IENVIKAVDILSDENGMNISKRRITISTSGIIPGIEKLLQEKIPVELAISLHAITNEKRD 230
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
L+PINRKYPLE L Y ++ RITFEYV++ +N + DA L + +
Sbjct: 231 ALIPINRKYPLEDLYTILNEYQKITKR-RITFEYVLIDKLNVTQSDADRLAEFMHSFDHV 289
Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSEC-IKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
+NLIP+NP PG +Y + I F + + +R +G DI ACGQL+ K+
Sbjct: 290 LNLIPYNPVPGNDYERPAPEKIKKFYNYLLNERKVNVTLRHEKGSDIDGACGQLRQSIKK 349
>gi|325673450|ref|ZP_08153141.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707]
gi|325555471|gb|EGD25142.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707]
Length = 369
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 184/372 (49%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + +E +EA+ ++G+P R Q+ + Y R D M+D+ +R
Sbjct: 16 MPPRHLADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREK 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ ++V G + L +E+V + R TLC+SSQ G
Sbjct: 72 VGAALFPRLLDVVKHVACDAGQTRKTL----WKANDGTLLESVLMRYPDRATLCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + L D ++SNIV
Sbjct: 128 CGMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRDGEVEGGPG---------RLSNIV 178
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
MGMGEPL N+ V ++ GL S+R +T+ST G P I ++ +E + V LA
Sbjct: 179 FMGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVRLA 238
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND P A
Sbjct: 239 VSLHTPDDELRDTLVPVNNRWAVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQPWRAD 297
Query: 301 NLIK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K + K + +NLIP NP PG ++ S + F ++ G S +R RG +
Sbjct: 298 MLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRGQE 357
Query: 358 ILAACGQLKSLS 369
I AACGQL + +
Sbjct: 358 IAAACGQLAAEN 369
>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Xenopus (Silurana) tropicalis]
Length = 328
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 140/337 (41%), Positives = 187/337 (55%), Gaps = 21/337 (6%)
Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
MSD+++ +R L I ++ E+ S DGT KWL GG +ETV+IPE
Sbjct: 1 MSDLAKSLREKLQDRACITGLPVLTEQASADGTVKWLFDV-----GGGNAVETVFIPEDD 55
Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
RGTLCVSSQ GC++ C FC TG Q RNL+ EIL Q+ A L G
Sbjct: 56 RGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHHLRQRLG--------- 106
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S R ISN+VMMGMGEPL N+ + +L + D G S+RR+T+STSG VP + R+
Sbjct: 107 -SSERVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLA 165
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+ V LA+SLHA ++ LR+ LV +NRKYPLE L+ C Y + ITFEY ML G+
Sbjct: 166 LDCPVALAVSLHAPNDALRDHLVSLNRKYPLEELLQTCVRYLDHAPRDFITFEYCMLDGV 225
Query: 293 NDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
ND P A LI++++ + K NLIPFNP+P + S + + F+ + +G
Sbjct: 226 NDQPEHAQQLIQLVRGHAQGKVWCKFNLIPFNPFPESGLVRSPPQRVSGFARLLSDAGIV 285
Query: 348 SPIRTPRGLDILAACGQLKSLSK-RIPKVPRQEMQIT 383
+ +R RG DI AACGQL K R R + T
Sbjct: 286 TTVRKTRGDDIDAACGQLAGEVKDRTRATERMARRRT 322
>gi|218438587|ref|YP_002376916.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
7424]
gi|218171315|gb|ACK70048.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7424]
Length = 355
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 124/362 (34%), Positives = 187/362 (51%), Gaps = 31/362 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G +L + + K G P R Q+ +WIY +G+R +S + R L +
Sbjct: 18 LLGKSLPQLTQWVQKQGQP----SYRGKQLHQWIYEKGVRSLNEISVFPKSWREDLKD-Y 72
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I +I I+ D TRK+LLR + IETV IP + R T+CVSSQVGC + C
Sbjct: 73 PIGRSDIHYRSIAPDKTRKYLLRLE-----DGLIIETVGIPTEKRLTVCVSSQVGCPMDC 127
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNLTA EI+ QVL + R++S++V MGMG
Sbjct: 128 DFCATGKGGFTRNLTASEIVDQVLTVQEDF-----------------QRRVSHVVFMGMG 170
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N V ++ ++ +G+ R +T+ST G I ++ + + LA+SLHA +
Sbjct: 171 EPLLNLKEVVPAVRTLNEDVGIGM--RSLTISTVGLPSKIEKLAQHQLQLTLAVSLHAPN 228
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P ++YPL+ L+D C Y ++ R+TFEY++L +ND P A L ++
Sbjct: 229 QKLREQLIPSAKRYPLKYLLDNCHKYVEMTKR-RVTFEYILLADVNDLPHHAQELATQIR 287
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y + + I F + ++ + +R RGL AACGQL+
Sbjct: 288 GFQSHVNLIPYNPISEADYQRPNGERINAFMKILQEEKIAVSVRYSRGLQADAACGQLRE 347
Query: 368 LS 369
Sbjct: 348 RK 349
>gi|262038981|ref|ZP_06012317.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
gi|261747005|gb|EEY34508.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
Length = 357
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 197/368 (53%), Gaps = 26/368 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K ++G E+L+ G+ + +Q++ W++ + + DF ++IS+ R +L
Sbjct: 8 DKIDILGFNLEKLQNIFADTGL----KKFNANQVYDWLHNKLVFDFDKFTNISKHDREIL 63
Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ F++ +IS T K+L R IE+V I K+R TLCVSSQ+G
Sbjct: 64 KKKFALPKLVHRSHQISEDRDTEKFLFELKDR-----RLIESVLISHKNRHTLCVSSQIG 118
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC T T K RNL A EIL+Q ++ L + K+ N+V
Sbjct: 119 CLIGCDFCATATMKYERNLDASEILMQFYHIQNYLKE--------------KNEKLGNVV 164
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
MGMGEP N+DNV +S++I + G +FSKR T+STSG VP I + E+ + LAIS
Sbjct: 165 FMGMGEPFLNYDNVIESINILNSDKGQNFSKRNFTISTSGIVPVINKFTEDENQINLAIS 224
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+V +D+R+ L+PIN+ Y ++ L +A +Y + RITFEY+++ +N +DA L
Sbjct: 225 LHSVKDDIRSELMPINKTYKVKELKEALINYQKKT-KNRITFEYILIDDLNCETKDAFEL 283
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ L +NLIP+NP G Y +K F +K + +R +G DI AAC
Sbjct: 284 MNFLHSFSCLVNLIPYNPVAGKPYSTPSKKKQREFYTLLKDKNVNVTLRETKGQDIAAAC 343
Query: 363 GQLKSLSK 370
GQLK+ +
Sbjct: 344 GQLKAKKE 351
>gi|119510469|ref|ZP_01629602.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
gi|119464891|gb|EAW45795.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
Length = 352
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 187/362 (51%), Gaps = 31/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G EL + + G P R Q+ WIY +G+R +S ++ R + +
Sbjct: 19 PPLLGASVAELSLWVQQQGQPA----YRGKQLHDWIYHKGVRSLADISAFPKQWRAEVAE 74
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I I ++ DGT K+LL+ IETV IP R T+CVS+QVGC +
Sbjct: 75 V-PIGRSTIHHRAVAPDGTIKYLLKL-----ADGQIIETVGIPTAKRLTVCVSTQVGCPM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL EI+ QVL + +++S++V MG
Sbjct: 129 ACDFCATGKGGFTRNLARHEIVDQVLTVQEDF-----------------QQRVSHVVYMG 171
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N +NV KSL + +G+ +R +T+ST G I ++ + V LA+SLHA
Sbjct: 172 MGEPLLNTENVLKSLKSLNQDVGIG--QRSLTVSTVGIRDRIRQLAQHNLQVTLAVSLHA 229
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P R YPLE L+D CR Y ++ RRI+FEYV+L G ND P A+ L K
Sbjct: 230 PNQALREELIPSARPYPLEDLLDECREYVEIT-RRRISFEYVLLAGFNDLPEHAMQLAKC 288
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + +NLIP+NP +Y I F +K+ + +R RGL+ AACGQL
Sbjct: 289 LRGFQSHVNLIPYNPISEVDYKRPSSDRIQAFVNILKQQNTAVSVRYSRGLEADAACGQL 348
Query: 366 KS 367
++
Sbjct: 349 RA 350
>gi|313681247|ref|YP_004058985.1| 23S rRNA m(2)a-2503 methyltransferase [Sulfuricurvum kujiense DSM
16994]
gi|313154107|gb|ADR32785.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfuricurvum kujiense DSM
16994]
Length = 354
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 139/375 (37%), Positives = 203/375 (54%), Gaps = 32/375 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K ++ + EL + R QIW WIY + F+ M ++ + +R
Sbjct: 1 MGKLCILDYTKAELAGMVK--------PSFRAKQIWGWIYHQYATSFETMQNLPKTMREE 52
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC--------IGGPVEIETVYIPEKSRGT 115
L Q + I+ +I ++ S DGT K+L + E I ++R T
Sbjct: 53 LAQTYEIMPLKIARKECSTDGTIKYLFELSDGKTVETVWLKMKDESIDEEGNIEHEARYT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+CVS+QVGC + CSFC T R+LTA EI+ QVL + M
Sbjct: 113 VCVSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVLAVK--------------MDNNLA 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EE 234
+ NIV MGMGEPL N DN+ K+++I D GLS S +R T+STSG I ++G +
Sbjct: 159 AHRRLNIVYMGMGEPLDNLDNLAKAITILKDEEGLSISGKRQTVSTSGLSTKIDKLGEMD 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+GV +AISLHAV ++LR L+P+N+ Y + +IDA + +P + +R+ FEY+++K ND
Sbjct: 219 LGVHIAISLHAVDDELRTELIPMNKAYNIASIIDAVKRFP-IDTRKRVMFEYLVIKNKND 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
A L+K+L GI AK+NLI FNP+PG +Y ++D+V F E + + G IR +
Sbjct: 278 DLGSAKKLVKLLHGIKAKVNLIYFNPYPGSDYQRPSREDMVAFQEYLIKHGVLCTIRDSK 337
Query: 355 GLDILAACGQLKSLS 369
GLDI AACGQLK S
Sbjct: 338 GLDISAACGQLKEKS 352
>gi|113476505|ref|YP_722566.1| radical SAM protein [Trichodesmium erythraeum IMS101]
gi|123056519|sp|Q110I1|RLMN_TRIEI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|110167553|gb|ABG52093.1| radical SAM enzyme, Cfr family [Trichodesmium erythraeum IMS101]
Length = 345
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 129/362 (35%), Positives = 188/362 (51%), Gaps = 31/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G+ +L E + + G P R Q+++WIY +G + ++ S++ R ++
Sbjct: 11 TPLLGLSLAKLTEWVQQQGQPA----YRGKQLYQWIYQKGAKSLADITVFSKQWREEIS- 65
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+F I I ++ D T K+LL+ IETV IP R T+CVSSQVGC +
Sbjct: 66 NFPIGRSVIHHRSVAPDATVKYLLKLS-----DGNIIETVGIPTYKRLTVCVSSQVGCPM 120
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL A EI+ QVL + R++S+IV MG
Sbjct: 121 ACDFCATGKGGFSRNLEAHEIIDQVLTVQEDF-----------------ERRVSHIVFMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N NV ++ + +G+ +R IT+STSG I ++ + V LA+SLHA
Sbjct: 164 MGEPLLNTKNVLAAVRSLNQDLGIG--QRLITISTSGIRDRIRQLAQHKLQVTLAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P + YPL LI CR Y ++ RI+FEY++L ND P A L K
Sbjct: 222 SNQRLREHLIPSAKFYPLADLISECREYVKITKR-RISFEYILLASFNDLPDHARELAKN 280
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G +NLIP+NP +Y Q+ I TF+ + + IR RGL+ AACGQL
Sbjct: 281 MRGFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAVSIRYSRGLEANAACGQL 340
Query: 366 KS 367
++
Sbjct: 341 RA 342
>gi|288924769|ref|ZP_06418706.1| radical SAM enzyme, Cfr family [Prevotella buccae D17]
gi|288338556|gb|EFC76905.1| radical SAM enzyme, Cfr family [Prevotella buccae D17]
Length = 358
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 131/385 (34%), Positives = 204/385 (52%), Gaps = 32/385 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K SL+G+ EL++ ++G+P Q+ KW+Y + ++ M++IS+
Sbjct: 1 MNT--KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKAN 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGT 115
R L H++I +DE+ S DGT K+L +G E +ETVYIP+K R T
Sbjct: 55 REKLAGHYTIGCASPIDEQRSKDGTVKYLFPVTTTAVGENREAPVMFVETVYIPDKDRAT 114
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVS QVGC + C FC TG Q NL+ +IL QV
Sbjct: 115 LCVSCQVGCKMNCLFCQTGKQGFEGNLSVADILNQVYSL-------------------PE 155
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
++NIV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R EE
Sbjct: 156 VDNLTNIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEES 215
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+AIS+H+ + R L+P R +E +++ ++Y S+ RR++FEY++ G+NDS
Sbjct: 216 DCHVAISMHSPLPEQRAELMPAQRGMGIEEVVELLKNY-DFSHQRRLSFEYIVFGGVNDS 274
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A ++++LKG+ +INLI F+ PG +++K + + + G + IR RG
Sbjct: 275 NAHAREIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRG 334
Query: 356 LDILAACGQLKSLSKRIPKVPRQEM 380
DI AACG L S SK+I ++ +
Sbjct: 335 EDIFAACGLL-STSKKIEELRSKTS 358
>gi|260591531|ref|ZP_05856989.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319]
gi|260536562|gb|EEX19179.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319]
Length = 346
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 193/365 (52%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+ R L
Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYSQHVKSIDEMTNISKANREKLA 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I E +D + S DGT K+L +ETVYIPE+ R TLCVSSQ+GC
Sbjct: 61 AEYEIGCKEPIDAQHSKDGTIKYLFPT-----DSGKFVETVYIPEEDRATLCVSSQIGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NL+A +IL Q+ K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLSATDILNQIYSL-------------------PERDKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
G GEP+ N DNV ++ + + G ++S +RIT+S+ G + R EE +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRTTEVLTADFGYAWSPKRITVSSVGIKGKLKRFLEESNCHVAISMHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R+ L+P R +E +++ +Y S+ RR++FEY++ KG+NDS A ++K+
Sbjct: 217 PLHEQRSELMPAERGMSIESIVELLSNY-DFSHQRRLSFEYIVFKGVNDSEEHAKAIVKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++GI ++NLI F+P P D + F + + G + IR RG DI AACG L
Sbjct: 276 VRGIECRVNLIRFHPIPNIPLHGVDDHKMEQFRNYLTQHGVFTTIRASRGQDIFAACGLL 335
Query: 366 KSLSK 370
+ K
Sbjct: 336 STAKK 340
>gi|126659786|ref|ZP_01730913.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110]
gi|126618938|gb|EAZ89680.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110]
Length = 342
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 128/363 (35%), Positives = 189/363 (52%), Gaps = 31/363 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G E+L + + + G P R Q+ +W+Y +G R +S + R L +
Sbjct: 10 LLGKSVEQLTDWVKQQGQPA----YRGKQLHQWLYQKGARSLTDISVFPKTWREELKD-Y 64
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I I+ D TRK+LL G + IETV IP R T+CVSSQVGC + C
Sbjct: 65 QIGRSNIYHRTIADDQTRKYLLSL-----GDELIIETVGIPTSKRLTVCVSSQVGCPMNC 119
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG R+LT EI+ QVL + +++S++V MGMG
Sbjct: 120 DFCATGKGGYTRDLTCAEIVDQVLTVQEDF-----------------QQRVSHVVFMGMG 162
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N V K++ I + +G+ +R +T+ST G I + V A+SLHA +
Sbjct: 163 EPLLNLKEVIKAVKILNQDVGIG--QRSLTISTVGIPKKILELAHRKLQVTFAVSLHAPN 220
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P + YPL L+ CR Y ++ RR++FEY++L G+NDS A+ L K LK
Sbjct: 221 QTLREQLIPSAKYYPLPKLLADCRKYVEIT-GRRVSFEYILLGGVNDSSEQAIQLAKCLK 279
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y D + I F ++ + +R RGL+ AACGQL++
Sbjct: 280 GFQSHVNLIPYNPIEEADYQRPDTQSINLFRNVLEEQKIAVSVRYSRGLEANAACGQLRA 339
Query: 368 LSK 370
+S+
Sbjct: 340 MSQ 342
>gi|254421960|ref|ZP_05035678.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335]
gi|196189449|gb|EDX84413.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335]
Length = 372
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 127/362 (35%), Positives = 192/362 (53%), Gaps = 31/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G E L E +++ G P R Q+ +WIY +GIR ++ S++ R ++
Sbjct: 30 VPLLGRSIEALTEWVIQHGQPA----YRGKQLHQWIYQKGIRSLDEVTVFSKKWRAEVS- 84
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + I S DGT K+LLR + IE V IP R T+CVSSQ+GC +
Sbjct: 85 GFPVGRSHIHHRSESPDGTIKYLLRLR-----DGLIIEAVGIPSDKRLTVCVSSQIGCPM 139
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL EI+ QVL + R++SNIV MG
Sbjct: 140 GCDFCATGKGGFTRNLETYEIVDQVLTVQEDF-----------------QRRVSNIVFMG 182
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
MGEPL N + V ++ + +G+ +R +T+ST G +I R+ +++ + LA+SLHA
Sbjct: 183 MGEPLLNTEAVIGAVRSLNQDIGIG--QRMMTVSTVGIPGHIRRLAEQQMQITLAVSLHA 240
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P ++YPL L+D CR Y ++ RR+TFEY++L +ND A L
Sbjct: 241 SNQALRTRLIPSAKQYPLSALLDECRDYVKMT-GRRVTFEYILLADLNDRSEHAAELASE 299
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + +NLIP+NP +Y + + F++ +K G + +R RGL+ AACGQL
Sbjct: 300 LRGFQSHVNLIPYNPISEVDYQRPSRARVEGFTQQLKDKGIAVSVRYSRGLEKDAACGQL 359
Query: 366 KS 367
++
Sbjct: 360 RA 361
>gi|326333653|ref|ZP_08199890.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
gi|325948559|gb|EGD40662.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
Length = 395
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 118/371 (31%), Positives = 183/371 (49%), Gaps = 27/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + ++A + G+P R Q+ + R + D M+D+ R L
Sbjct: 42 RHLADLDLAGRQDAAKEAGLPG----FRAKQLSVHYFERLVDDPAKMTDLPASQREELVN 97
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + ++ + TRK L + +E+V + R T+C+SSQ GC
Sbjct: 98 TFLPDLMTPIRQQEADKGTTRKTLWKL-----FDGALVESVLMRYTDRATVCISSQAGCG 152
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EI+ QV++A + IP ++SN+V M
Sbjct: 153 MACPFCATGQGGLERNMSTAEIVHQVVVAARQMA---------SGEIPGGPGRLSNVVFM 203
Query: 186 GMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ + ++ + GL S R +T+ST G VP I ++ EE I V LA+S
Sbjct: 204 GMGEPMANYKALMGAVRRLTSPAPEGLGLSARHVTVSTVGLVPRIKQLTEEGIPVTLALS 263
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LRN LVPIN ++ + ++A +Y ++ R++ EY M++GIND A L
Sbjct: 264 LHAPDDELRNELVPINTRFSVAETVEAAWNYARVTKR-RVSIEYAMMRGINDQAWRADLL 322
Query: 303 IKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
+L +NLIP NP PG ++ SD D F ++ G S+ +R RG +I
Sbjct: 323 ADVLNGYGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREI 382
Query: 359 LAACGQLKSLS 369
ACGQL + S
Sbjct: 383 DGACGQLAAQS 393
>gi|152993941|ref|YP_001359662.1| ribosomal RNA large subunit methyltransferase N [Sulfurovum sp.
NBC37-1]
gi|205829910|sp|A6QCU6|RLMN_SULNB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|151425802|dbj|BAF73305.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 359
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 129/370 (34%), Positives = 205/370 (55%), Gaps = 32/370 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ + + +EEL E + R+ QI+ WIY + F+ M ++ + +R L+
Sbjct: 5 KKIIQDLTKEELAEKIK--------PAFRSKQIYDWIYHKYAASFEEMKNLPKAMREELD 56
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPAR--------CIGGPVEIETVYIPEKSRGTLC 117
+++ + V + S DG+RK+L + E + + R T+C
Sbjct: 57 AEYTLAPLKTVTVQDSMDGSRKYLFELHDGHTVEAVLLLMRDKEYHEDGSVKHQERYTVC 116
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQVGC + C+FC T +RNLTA EI+ Q+ + + + R
Sbjct: 117 ISSQVGCKVGCAFCLTAKGGFMRNLTAGEIVEQLRMIKKD-------------NDIAANR 163
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236
++ NIV MGMGEPL N + V KS+ I ++ G++ + R T+STSG I ++G E+G
Sbjct: 164 RV-NIVFMGMGEPLDNLEAVAKSVKIFAEEEGMAIAPHRQTISTSGLSSKIEKLGKMELG 222
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V LAISLHAV ++LR L+PIN+ Y +E +I A +++P +++ +R+ FEY+++K +ND
Sbjct: 223 VNLAISLHAVDDELRQQLMPINKAYNIESIITAVKNFP-VNDRKRVMFEYLVIKDVNDDI 281
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+ +L GI AK+NLI FNP+ G E+ + D+ F E + + G IR +GL
Sbjct: 282 SAAKKLLSLLDGIKAKVNLIYFNPYGGTEFKRPSEADMKKFQEYLTKRGLHCTIRESKGL 341
Query: 357 DILAACGQLK 366
DI AACGQL+
Sbjct: 342 DISAACGQLR 351
>gi|331698480|ref|YP_004334719.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia
dioxanivorans CB1190]
gi|326953169|gb|AEA26866.1| Ribosomal RNA large subunit methyltransferase N [Pseudonocardia
dioxanivorans CB1190]
Length = 368
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 118/371 (31%), Positives = 178/371 (47%), Gaps = 27/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + + A+ +G+P R Q+ + + R D M+D+ R L
Sbjct: 18 RHLADLDPADRKAAVADLGLPG----FRADQLARHYFGRLTADVDEMTDLPAAARETLAS 73
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + ++ TRK L R E+V + R T+C+SSQ GC +
Sbjct: 74 LLPPLVTPVTEQSCDEGATRKMLWR-----GHDGALAESVLMAYPDRATVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV A + D E ++SNIV MG
Sbjct: 129 ACPFCATGQGGLQRNLSTGEIVDQVRQAAAAARDGALGEP----------MRLSNIVFMG 178
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V +L GL S R IT+ST G V I ++ E V LA+SL
Sbjct: 179 MGEPLANYKRVVAALRRITSPAPDGLGISPRGITVSTVGLVQAIDKLAAEGLPVTLAVSL 238
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ + ++DA R Y + RR++ EY +++ +ND P A L
Sbjct: 239 HTPDDELRDTLVPVNNRWKVGEVLDAARRYAQAT-GRRVSIEYALIRDVNDQPWRADLLG 297
Query: 304 KILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K+L+ +NLIP NP PG E+ S + F ++ +G + +R RG +I
Sbjct: 298 KLLRQRVGTKRVHVNLIPLNPTPGSEWDASPRPVQDEFVRRVQAAGVACTVRDTRGQEID 357
Query: 360 AACGQLKSLSK 370
AACGQL + +
Sbjct: 358 AACGQLAATHR 368
>gi|319955823|ref|YP_004167086.1| 23S rRNA m(2)a-2503 methyltransferase [Nitratifractor salsuginis
DSM 16511]
gi|319418227|gb|ADV45337.1| 23S rRNA m(2)A-2503 methyltransferase [Nitratifractor salsuginis
DSM 16511]
Length = 370
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 132/374 (35%), Positives = 203/374 (54%), Gaps = 32/374 (8%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N +K + +EEL + R QI+ WIY + F+ M+++ + +R
Sbjct: 10 NDSEKRIIHDYTKEELGREI--------QPAFRAKQIYNWIYHKHADSFEEMANLPKTMR 61
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSR 113
L + + + E+V ++ S DG+ K+L R V + + R
Sbjct: 62 QELAKKYELHPLEMVSKQESRDGSIKYLFRLHDGHTVEAVLLLMKEAQYHEDGTLKHHRR 121
Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
T+C+SSQVGC + C+FC T +RNL+A EI+ QVL
Sbjct: 122 YTVCISSQVGCKVGCAFCLTAKGGFIRNLSAGEIVDQVLEIYKD-------------QNI 168
Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG- 232
++ N+V MGMGEPL N DNV K++ I +D G+S S R T+STSG I ++G
Sbjct: 169 PSNHRV-NLVYMGMGEPLDNLDNVAKAVKIFADMDGMSISPNRQTISTSGLSSKIEKLGR 227
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
++GV LAISLHAV ++LR L+PIN+ Y + +I+A R++P ++ +++ FEY+++K +
Sbjct: 228 MDLGVNLAISLHAVDDELREKLMPINKAYNIASIIEAVRNFP-VNQRKKVLFEYLVIKHV 286
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
ND A L+K+L G+ AK+NLI FNP+PG E+ + +D+ F E + G IR
Sbjct: 287 NDDIASAKKLVKLLNGLKAKVNLIYFNPYPGTEFERPEPEDMKRFQEYLLSKGVLCTIRE 346
Query: 353 PRGLDILAACGQLK 366
+GLDI AACGQL+
Sbjct: 347 SKGLDISAACGQLR 360
>gi|167765103|ref|ZP_02437216.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC
43183]
gi|167696731|gb|EDS13310.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC
43183]
gi|290770009|gb|ADD61775.1| putative protein [uncultured organism]
Length = 345
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 29/371 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+G+ EL+ + +G+P QI W+Y + + M+++S R LL
Sbjct: 2 KQPLLGLTLTELQTVVKNLGLPG----FAAKQIAAWLYDKKVASIDEMTNLSLRHRALLK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVGC
Sbjct: 58 EIYEVGCEVPVDAMRSVDGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLTA +I+ Q+ K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------------------NSLPERDKLTNVVMM 153
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N D V K+L + + S G +S +RITLS+ G + R EE LA+SLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAVSLHS 213
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P + + + ++D R+Y S RR++FEY++ KG+NDS A L+K+
Sbjct: 214 PVPLQRRELMPAEKAFSITEIVDLLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ +INLI F+ PG +D + + F + + G + IR RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRASRGEDIFAACGML 332
Query: 366 KSLSKRIPKVP 376
+ + K
Sbjct: 333 STAKQEENKEE 343
>gi|38234081|ref|NP_939848.1| hypothetical protein DIP1502 [Corynebacterium diphtheriae NCTC
13129]
gi|81564752|sp|Q6NGK9|RLMN_CORDI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|38200343|emb|CAE50029.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 368
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 117/375 (31%), Positives = 184/375 (49%), Gaps = 31/375 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
F+ + + +E +AL ++G+P + R +QI + Y R D M+D+ R
Sbjct: 18 FMPPKHFADLSADERIDALKELGLP----KFRANQIARHYYGRLEADPSTMTDLPAAARE 73
Query: 63 LLNQHFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ + V + T+K L + +E+V + +R TLC+SSQ
Sbjct: 74 KVKDALFPQLMQPVRAVQADDGETQKTLWKLH-----DGTLLESVLMRYPNRATLCISSQ 128
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C FC TG L RNL+ EI+ QV A + + + G ++SN
Sbjct: 129 AGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASATM--------------QAEGGRLSN 174
Query: 182 IVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
IV MGMGEPL N+ V ++ G S+R +T+ST G P I ++ +E V
Sbjct: 175 IVFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADEDLSVT 234
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLH ++LRN LVP N ++ + ++DA R+Y S RR++ EY +++ +ND
Sbjct: 235 LAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRS-GRRVSIEYALIRDVNDQGWR 293
Query: 299 ALNLIK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A L K + K + +NLIP NP PG ++ S F + + G + +R RG
Sbjct: 294 ADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPMDRQKEFVQRVIAQGVTCTVRDTRG 353
Query: 356 LDILAACGQLKSLSK 370
+I AACGQL + +
Sbjct: 354 QEIAAACGQLAAEER 368
>gi|119717461|ref|YP_924426.1| radical SAM protein [Nocardioides sp. JS614]
gi|205829791|sp|A1SLQ4|RLMN_NOCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|119538122|gb|ABL82739.1| 23S rRNA m(2)A-2503 methyltransferase [Nocardioides sp. JS614]
Length = 376
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 116/371 (31%), Positives = 177/371 (47%), Gaps = 27/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +E ++G+P R Q+ + R + D M+D+ R L
Sbjct: 24 RHLADLAPDERTAYAKELGLPG----FRAKQLSTHYFSRLVDDPDQMTDLPAGQRAELVA 79
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + TRK L R +E+V + R T+CVSSQ GC
Sbjct: 80 GLLPGLMTPLRTMEADRGTTRKTLWRL-----FDGALVESVLMRYPDRATMCVSSQAGCG 134
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EI+ QV+ L +P ++SN+V M
Sbjct: 135 MACPFCATGQGGLQRNMSTAEIVEQVVAGARSLA---------RGEVPGGPGRVSNVVFM 185
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ +D GL S R +T+ST G VP + ++ +E I V LA+S
Sbjct: 186 GMGEPLANYKAVLGAVRRLTDPAPDGLGMSARGVTVSTVGLVPRMRQLADEGIPVTLALS 245
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LRN LVPIN ++ + ++A +Y ++ R++ EY M++GIND A L
Sbjct: 246 LHAPDDELRNELVPINTRFSVAETVEAAWNYAKVTKR-RVSIEYAMMRGINDQAWRADLL 304
Query: 303 IKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
+L+ +NLIP NP PG ++ SD D F ++ + +R RG +I
Sbjct: 305 GDVLRGYGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLEAKAIPTTVRDTRGREI 364
Query: 359 LAACGQLKSLS 369
ACGQL +
Sbjct: 365 DGACGQLAATE 375
>gi|167747880|ref|ZP_02420007.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662]
gi|167652702|gb|EDR96831.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662]
Length = 354
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 114/353 (32%), Positives = 193/353 (54%), Gaps = 27/353 (7%)
Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWL 89
+ R QI++W + R M+++ + ++ L + + + V+ +S DGTRK+L
Sbjct: 22 KKFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQEKYEAAELKEVETYVSRIDGTRKYL 81
Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
+ IE+V + K ++C+SSQ GC + C FC + L RNL E+L
Sbjct: 82 FQLN-----DGNTIESVLMKYKHGNSVCISSQAGCRMGCRFCASTLGGLDRNLLPSEMLG 136
Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
Q+ + G ++SN+V+MG GEPL N++N+ + + + +D G
Sbjct: 137 QIYYIQK-----------------DTGERVSNVVVMGTGEPLDNYENLLRFIRLLTDEKG 179
Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
L+ S+R +T+ST G VP I + +E + LAISLHA ++++R L+P+ +Y +E L+
Sbjct: 180 LNLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLHASNDEMRKSLMPVANQYSMEDLLA 239
Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
AC++Y + RRITFEY ++ +NDSP++A L + L G P +NLIP NP ++
Sbjct: 240 ACKYYFDRT-GRRITFEYSLVAEVNDSPQNAKELCRFLGGFPCHVNLIPVNPIKERDFRQ 298
Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
S + + F ++++ + IR G DI AACGQL+ ++ V +QE++
Sbjct: 299 SMPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQLRRK--KLNSVEKQEIR 349
>gi|67921029|ref|ZP_00514548.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501]
gi|67857146|gb|EAM52386.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501]
Length = 341
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 125/362 (34%), Positives = 189/362 (52%), Gaps = 31/362 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G +EL + + G P R Q+ +W+Y +G+R +S + R +
Sbjct: 8 LLGKSVDELTTWIKQQGQPG----YRGKQLHQWLYQKGVRSLTEISVFPKAFREDFKD-Y 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I I+ D TRK+LL + IETV IP R T+CVSSQVGC + C
Sbjct: 63 PIGRSNINHCTIAPDKTRKYLLSL-----ADGLIIETVGIPTAKRLTVCVSSQVGCPMNC 117
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG + RNL++ EI+ Q+L + + ++S++V MGMG
Sbjct: 118 DFCATGKGEYDRNLSSAEIVDQILTVQEDFQE-----------------RVSHVVFMGMG 160
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N V K++ I + +G+ +R +T+ST G I + V A+SLHA +
Sbjct: 161 EPLLNTKEVVKAVKILNQDVGIG--QRSLTISTVGIPKKILELAHHQLQVTFAVSLHAAN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P + YPL L+ CR Y ++ RR++FEY++L G+ND P A+ L K LK
Sbjct: 219 QKLREQLIPSAKFYPLPKLLADCRKYVEIT-GRRVSFEYILLGGVNDLPEQAIELAKCLK 277
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP +Y S+ + I F ++ + +R RGL+ AACGQL++
Sbjct: 278 GFQSHVNLIPYNPIEEVDYQRSNAESINIFKTILEEKNIAVSVRYSRGLEANAACGQLRA 337
Query: 368 LS 369
+S
Sbjct: 338 MS 339
>gi|300742035|ref|ZP_07072056.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567]
gi|311111949|ref|YP_003983171.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931]
gi|300381220|gb|EFJ77782.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567]
gi|310943443|gb|ADP39737.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931]
Length = 409
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 115/370 (31%), Positives = 177/370 (47%), Gaps = 15/370 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E L ++G R SQ+ K + R + D M+D+ + R +
Sbjct: 48 KHIADFDMAGRREFLKELGY----QPFRASQLSKHYFERLVNDPAQMTDLPAQDRDEIVS 103
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
V + G ++ + IE+V + +R T+C+SSQ GC +
Sbjct: 104 RAMPQLLTPVRTLEADGGDTLKVVH----RLFDGALIESVIMRYDNRVTMCISSQAGCGM 159
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q L RNL+ EI+ QV+ L G + +G + ++SNIV MG
Sbjct: 160 NCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLDKADGGSEDTRPLRVSNIVFMG 219
Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGE L N+ + ++ D GL S R +T+ST G VP I + E + LA+SL
Sbjct: 220 MGEALANYKSTMGAVHRLIDPAPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLALSL 279
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+PIN+++ ++ +DA Y + RRI+ EY +++ IND A L
Sbjct: 280 HAPDDELRDELIPINQRWKVDETLDAAYDYYR-TTGRRISIEYALIRDINDQGWRADLLG 338
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L +N IP NP PG ++ S + F E ++ G + IR RG DI
Sbjct: 339 KKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDG 398
Query: 361 ACGQLKSLSK 370
ACGQL + +
Sbjct: 399 ACGQLAAKEE 408
>gi|33865151|ref|NP_896710.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
WH 8102]
gi|81575037|sp|Q7U8K0|RLMN_SYNPX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|33638835|emb|CAE07132.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 344
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 182/370 (49%), Gaps = 37/370 (10%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+G ELE + G R Q+ W+Y +G R ++ + + R L +
Sbjct: 2 LLGRSAAELESWAVAQG----QKPFRGRQLHDWLYAKGARSLSEITVLPKAWRESLKEDG 57
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + V ++ D T K LL IETV IP R T+CVSSQVGC +
Sbjct: 58 VEVGRLKEVHRSVAADATTKLLL-----STDDGETIETVGIPTDQRLTVCVSSQVGCPMA 112
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L R+L EI+ QVL R ++ R+ S+IV MGM
Sbjct: 113 CRFCATGKGGLQRSLRTHEIVDQVLSVREVMD-----------------RRPSHIVFMGM 155
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
GEPL N V ++ +D +G+ +RRIT+ST G + ++ E LA
Sbjct: 156 GEPLLNSQAVLDAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELALATLGRAQFTLA 213
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LR L+P YP E L++ CRHY ++ RR++FEY++L G+ND+P A
Sbjct: 214 VSLHAPNQALREELIPTAHAYPYEALLEDCRHYLAVT-GRRVSFEYILLGGLNDAPEHAA 272
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L + G + +NLI +NP E+ + I F ++R G + +R RGLD A
Sbjct: 273 ELADRVGGFQSHVNLIAYNPIEEEEFQRPTRARIEGFQRVLERRGVAVSLRASRGLDQNA 332
Query: 361 ACGQLKSLSK 370
ACGQL+ +
Sbjct: 333 ACGQLRRRRQ 342
>gi|237738438|ref|ZP_04568919.1| radical SAM domain-containing protein [Fusobacterium mortiferum
ATCC 9817]
gi|229420318|gb|EEO35365.1| radical SAM domain-containing protein [Fusobacterium mortiferum
ATCC 9817]
Length = 356
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 136/376 (36%), Positives = 204/376 (54%), Gaps = 28/376 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +L+ + ++ELEE ++ +G+ + Q++ W++ + +RD ++++S + R
Sbjct: 5 MSEKINLLNLNQQELEEFVVSLGM----KKFYGKQLFNWLHKKIVRDLNEVTNLSLKDRE 60
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSS 120
LL + I + ++ +IS D T K+L + IETV + K R TLC+SS
Sbjct: 61 LLTEKAYIPFLNLLKHQISKIDKTEKFLFQLE-----DGNTIETVLLRHKDKRNTLCISS 115
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C+FC TG VR+L EI+ QV L G ++
Sbjct: 116 QVGCAVKCAFCATGQGGFVRDLNVSEIINQVYTIERRL--------------VKQGTNLN 161
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVML 239
NIV MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI + + E++ V L
Sbjct: 162 NIVFMGMGEPLLNLTNVLKALEILSNENGINISKRKITISTSGIVPNIEKILLEKVPVEL 221
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLH+ N+ R+ ++PINR+YPLE L + Y + RITFEY+++ N S DA
Sbjct: 222 AISLHSAINEKRDEIIPINRRYPLEDLHAVLQEYQRQTKR-RITFEYILINNFNVSEGDA 280
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDI 358
L + +NLIP NP G E K I F ++ + IR +G DI
Sbjct: 281 NALADFVHDFDHVVNLIPCNPVEGTEMTRPSDKKIERFVNFLQNVRKVNVTIRREKGTDI 340
Query: 359 LAACGQLKSLSKRIPK 374
ACGQL+ +K+ K
Sbjct: 341 DGACGQLRQKNKKPTK 356
>gi|227497538|ref|ZP_03927766.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM
15434]
gi|226832992|gb|EEH65375.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM
15434]
Length = 392
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 123/380 (32%), Positives = 178/380 (46%), Gaps = 26/380 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + L G+P R Q+ + + R RD Q M+D+ R L
Sbjct: 32 RHLADLDLAGRKAVLKDAGLPA----FRADQLSRHYFTRFTRDAQDMTDLPASQREQLAA 87
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + T K L V +E+V + K R TLCVSSQ GC
Sbjct: 88 ELLPDLIHEVRALRADGGRTIKHLWELH-----DGVRVESVLMRYKDRTTLCVSSQAGCG 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A + E + ++SN+V M
Sbjct: 143 MACPFCATGQMGLTRNLSTGEIIEQVRHAAQV---------SERGDLTGGPARLSNVVFM 193
Query: 186 GMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ NV +L + G S R IT+ST G VP I ++ E + V LA+S
Sbjct: 194 GMGEPMINYKNVVAALRRLTSPAPEGFGMSARGITVSTVGLVPLIRKLSTEGMPVTLAVS 253
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ L+PIN K+ + L+DA Y + RR++ EY ++K +ND A L
Sbjct: 254 LHAPDDELRDELIPINSKWKVGELLDAAYDYYS-TTGRRVSIEYALIKDMNDHAWRAQLL 312
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L A +N IP NP PG + CS+ F + ++R+G ++ +R RG DI
Sbjct: 313 ADELNARGRGWAHVNPIPLNPTPGSIWTCSEPDVQELFVDTLRRAGITTTVRDTRGSDID 372
Query: 360 AACGQLKSLSKRIPKVPRQE 379
ACGQL + + +
Sbjct: 373 GACGQLATEVLNQERARTRR 392
>gi|262276957|ref|ZP_06054750.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
gi|262224060|gb|EEY74519.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
Length = 357
Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 19/368 (5%)
Query: 9 LIGMMREELEEALLKI-GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+ E++ + ++ MR +Q+WK+ Y +G D S+++Q +R L +
Sbjct: 4 FADLNYREVKSIFSNNFNLDKKKSSMRANQVWKFYYQKGYSDPNLFSNLTQSLRDELLKI 63
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ P+I ++++S DGT KWLL + +ETVYIP ++ TLC+SSQVGC+L
Sbjct: 64 VNFSRPKIKNKQVSKDGTIKWLLELNDKN-----LVETVYIPSETHSTLCISSQVGCTLN 118
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC+TG Q LV+NL++ EI+ Q+L+A+ L D+ +KI+NIV MGM
Sbjct: 119 CKFCHTGIQPLVKNLSSNEIISQILIAKDELNDW------------KEQKKINNIVYMGM 166
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEP NF+N+KKS+ I D GL+FS ++IT+STSG PNI + EIG LA+SLHA +
Sbjct: 167 GEPFYNFENIKKSVEILKDENGLNFSNKKITVSTSGISPNIKKAANEIGTYLALSLHAPN 226
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
N++RN ++PIN+KY +E +I+ C Y N +I EYV+LK +ND+ + A L KI+
Sbjct: 227 NEIRNEIMPINKKYNIENIIEHCSQY-AKENGEKIFIEYVLLKDVNDTEQCAKELSKIMS 285
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
P K+NLI FNPWPG +Y + ++ F E IK++G+ +R RG DIL ACGQLK+
Sbjct: 286 QFPCKLNLIQFNPWPGVKYKTATKEQTSKFIEIIKKNGHVVTLRKSRGDDILGACGQLKT 345
Query: 368 LSKRIPKV 375
S+R +
Sbjct: 346 ASEREKRS 353
>gi|153005041|ref|YP_001379366.1| radical SAM protein [Anaeromyxobacter sp. Fw109-5]
gi|205829648|sp|A7HCD6|RLMN_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|152028614|gb|ABS26382.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. Fw109-5]
Length = 377
Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 144/360 (40%), Positives = 210/360 (58%), Gaps = 19/360 (5%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L + + LE + +G R Q+ +W+ +G ++D+ + +R L +
Sbjct: 16 LRSLPLDRLERLVAALG----ERPFRARQLHRWLQQKGAASLDELTDVPRALRAALAEAT 71
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
++ E E+ S DGT KW R +E+VY+PE R TLCVSSQVGC++ C
Sbjct: 72 TLTTLERATEQRSVDGTIKWTWRTH-----DGKLVESVYMPEPDRRTLCVSSQVGCAVGC 126
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+FC TGT L RNLT EI+ QV A + + + R ++N+V MGMG
Sbjct: 127 TFCLTGTMGLARNLTPGEIVEQVHRANRRIVELGEGQGP---------RPLTNLVFMGMG 177
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EPL N+ ++K +L + G +FS R +T+STSG VP I ++GEE V LAISL+A ++
Sbjct: 178 EPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTD 237
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
R+ L+PINR+YPL L++ACR +P + N RRITFEYV+L G+NDS DA+ L ++++G
Sbjct: 238 AQRDALMPINRRYPLAQLLEACRSFP-IRNGRRITFEYVLLGGVNDSLEDAVRLARLVRG 296
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
IP K+NLIP+N PG Y + +V F E + ++ +R RG DI AACGQL +
Sbjct: 297 IPTKVNLIPYNANPGLPYRAPAPERVVEFQETLAARNLTAVVRKNRGGDISAACGQLAAE 356
>gi|311744125|ref|ZP_07717931.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272]
gi|311313255|gb|EFQ83166.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272]
Length = 380
Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 122/371 (32%), Positives = 176/371 (47%), Gaps = 22/371 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + EE A ++G P R Q+ Y R RD M+D+ R +
Sbjct: 24 RHLADLSTEERTAAAAELGEPA----FRVKQVAHHYYARLERDPAAMTDLPAANRDRIAA 79
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ V + T K L R + V + + R T+CVSSQ GC
Sbjct: 80 ALLPTLLDPVRTMEADRGTTVKNLWRLFDGALVESVLMRYLSADGPGRATICVSSQAGCG 139
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EI+ QV+ A + ++SN+V M
Sbjct: 140 MACPFCATGQGGLQRNMSTAEIVDQVVDAAGRMARGEVAGGPG---------RLSNVVFM 190
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ V ++ GL S R ITLST G VP I ++ EE I V LA+S
Sbjct: 191 GMGEPMANYRAVVGAIRRMVAPAPDGLGLSARNITLSTVGLVPRIRQLTEEGIPVTLAVS 250
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVPIN ++ ++ ++DA R Y + RR++ EY M++ IND A L
Sbjct: 251 LHAPDDELRDTLVPINTRWKVDEVVDAARAYFDAT-GRRVSIEYAMMRDINDQAWRADLL 309
Query: 303 IKILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
+L +NLIP NP PG ++ S ++D F ++ G S+ +R RG DI
Sbjct: 310 GDVLTARGGIGWVHVNLIPLNPTPGSKWTASRREDEREFVRRLEAKGISTTVRDTRGSDI 369
Query: 359 LAACGQLKSLS 369
ACGQL +
Sbjct: 370 DGACGQLAAAE 380
>gi|218282588|ref|ZP_03488826.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
gi|218216459|gb|EEC89997.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
Length = 336
Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 122/358 (34%), Positives = 193/358 (53%), Gaps = 25/358 (6%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+ E L G R QI++W+Y + D M+++S+E R +L + F + E++
Sbjct: 1 MCEYALDHGW----KSYRGHQIFQWLYRNRVFDIDEMTNVSKETREILKKDFIVNPLELI 56
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+++S DGT K+L + +E+V + ++CVSSQVGC++ C+FC +G
Sbjct: 57 KKQVSHDGTTKFLFKTS-----DGALLESVMMVFDYGRSVCVSSQVGCNMGCAFCASGLT 111
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
K R+LT+ E++ QV+ + L ++S+IV+MG GEP N+DN
Sbjct: 112 KKKRDLTSGEMVAQVMYVQKELD--------------KDNLRLSHIVVMGTGEPFDNYDN 157
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
V L+ + GL R IT+ST G VP I E LAISLHA +++LR+ L+
Sbjct: 158 VMNFLATVNHDRGLGIGSRHITISTCGIVPRIYDFANEHTQYNLAISLHAPNDELRDQLM 217
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
P+N YPL+ L++A ++Y +N R+TFEY++LKG+ND P A L K+L G+ A +NL
Sbjct: 218 PVNHAYPLKELMEAIQYYGKENNR-RLTFEYILLKGVNDHPEHAKQLSKLLHGMNAYVNL 276
Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
IP+N + + + F + + ++ IR G DI AACGQL+ +
Sbjct: 277 IPYNAVDEKGFKSVTHDEAMVFYDLLMKNYVRCTIRKEHGNDIDAACGQLRIKEIKKE 334
>gi|291276281|ref|YP_003516053.1| radical-SAM-proteins [Helicobacter mustelae 12198]
gi|290963475|emb|CBG39305.1| Putative radical-SAM-proteins [Helicobacter mustelae 12198]
Length = 379
Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 140/377 (37%), Positives = 217/377 (57%), Gaps = 32/377 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K +++ +LE L R QI+ W+YV+ +DF M ++ + +++ L
Sbjct: 15 KMQNIYDYTLRQLEGLL--------EPSFRAKQIYHWLYVQYAQDFDVMHNLPKALKNKL 66
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTL 116
++ + I + EI+ + SCDGT+K+L + V I+ I SR T
Sbjct: 67 SKDYRIKHLEIMKVETSCDGTKKYLFKTLDGHTFESVLIKMREEKIDCEGRIIHGSRYTF 126
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
CVSSQ+GC + C+FC+T VRNL++ EI+ QVL + P
Sbjct: 127 CVSSQIGCKVGCAFCFTAKGGFVRNLSSGEIVEQVLQLKKDNSLAP-------------- 172
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EI 235
K NIV MGMGEPL N +NV +++ I S+ GLS S RR T+STSG P IA++GE ++
Sbjct: 173 EKRVNIVFMGMGEPLNNLENVAQAIRIMSELDGLSISPRRQTISTSGIAPKIAKLGELDL 232
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
GV LAISLHAV ++LR+ L+P+N+ Y ++ +IDA R +P + +++ FEY+++K +ND
Sbjct: 233 GVQLAISLHAVDDELRSRLIPMNKAYNIKSIIDAVRQFP-VDTRKKVMFEYLVIKDVNDD 291
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
+ A L+K+L GI AK+NLI FNP G E+ + + + F++ + + G + IR RG
Sbjct: 292 LKSAKILLKLLDGIRAKVNLILFNPHEGSEFQRPEMEQVKKFADFLVQRGLLATIRESRG 351
Query: 356 LDILAACGQLKSLSKRI 372
+DI AACGQL+ ++
Sbjct: 352 IDISAACGQLREKETKV 368
>gi|225850129|ref|YP_002730363.1| ribosomal RNA large subunit methyltransferase N [Persephonella
marina EX-H1]
gi|225644821|gb|ACO03007.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
Length = 353
Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 127/371 (34%), Positives = 203/371 (54%), Gaps = 31/371 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
S+ + +LE + G + R QI KWIY + + + M+D+S+EVR+ L +
Sbjct: 2 ISIKDLNYNQLERWVKDQGW----KKFRAKQIAKWIYNKKVNSYDEMTDLSKEVRNYLKE 57
Query: 67 HFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + E+V E+ S DG+ K+L R +E+V+IPE+ TLCVS+QVGC+
Sbjct: 58 NTKLNVLELVTFERSSQDGSIKFLWRLE-----DGHTVESVFIPERGHNTLCVSTQVGCA 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC+T L+RNLT EI+ Q + ++ +G +ISN+V M
Sbjct: 113 VGCKFCFTTKDGLIRNLTTAEIVDQYIQSQIFVG---------------PENRISNVVYM 157
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---MLAIS 242
GMGEPL N++NVK+S+ I +D L S R+IT+S+SG + I ++ ++ LA+S
Sbjct: 158 GMGEPLANYENVKRSVQILTDDRMLGLSNRKITISSSGIIHQIKKMYDDPSFPQVRLAVS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A R ++PI+ LE L+ P + RI EYV++K IND P DA L
Sbjct: 218 LNASDQKTRERIMPISETNSLEDLMKTLNRLP-VKTGFRIMLEYVLIKDINDRPEDAHRL 276
Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+++ K+NLIPFNP+PG ++ +++ + F + + + + +R +G DI A
Sbjct: 277 ARLIGKNKKRYKVNLIPFNPYPGSDFERPEKERVDQFHKILWQYNIGAFVRWSKGSDISA 336
Query: 361 ACGQLKSLSKR 371
ACGQL+ +
Sbjct: 337 ACGQLRKKEVQ 347
>gi|257785159|ref|YP_003180376.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469]
gi|257473666|gb|ACV51785.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469]
Length = 372
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 113/361 (31%), Positives = 178/361 (49%), Gaps = 28/361 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L + E++ + + +G P + R QI +WI+ +G F MS++ + +R L+
Sbjct: 32 KSDLRSLSSEQILDLVTSLGQP----KFRAKQIEEWIWSKGATSFDQMSNLPKTLREELS 87
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + E V ++S DG+RK+LLR+P +E V +P ++ ++C S+Q GC+
Sbjct: 88 KQVILAGAEQVVRQVSEDGSRKYLLRYP-----DGTSVECVGMPNGNKLSVCASTQAGCA 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG L R+L+A EI QV+ R +++++V+M
Sbjct: 143 MGCAFCATGASGLTRSLSASEIYEQVMHVRDDFDT-----------------RVTSVVLM 185
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N+D ++ + G R IT+ST G +P I R E LA+SLH
Sbjct: 186 GQGEPFMNYDATLTAMRRLNSPDGAGIGARHITVSTCGVIPMIKRFASEPEQFTLAVSLH 245
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ R+ L+P RKY L L D Y + RR T+EY ++KG+NDS + L
Sbjct: 246 SAVQKTRDALMPGVRKYSLIHLYDIMGEYVDKT-GRRPTYEYALIKGVNDSDNELGALRD 304
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+G +N+I N G ++ + F + G + IR RG DI AACGQ
Sbjct: 305 FCRGTLCHVNIIQLNEIEGSKFHPTSPARAQEFVNSLNSVGVEATIRLSRGSDIDAACGQ 364
Query: 365 L 365
L
Sbjct: 365 L 365
>gi|308071465|ref|YP_003873070.1| hypothetical protein PPE_04773 [Paenibacillus polymyxa E681]
gi|305860744|gb|ADM72532.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 365
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 133/384 (34%), Positives = 210/384 (54%), Gaps = 26/384 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+KKES+ G+ ++L L++ G H + R Q+W +Y + + DF M++I ++ L
Sbjct: 1 MKKESIYGLTLDQLTAWLIEHG----HKKSRALQVWDALYRKRVTDFATMAEIHEDCTRL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +HFSI E ++ S DGT K+L R IETV + K ++CV++QVG
Sbjct: 57 LAEHFSIETLEEHVKQQSADGTVKFLFRLQ-----DGNLIETVLMRHKFGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+L++ EI+ Q++ + L G ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVEQIMKVQLYLDQ------------ERPGDQVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP NF N+ + + D GL+ R IT+STSG I + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPRHITVSTSGLADKIIEFADSDLHVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR P+E L+ A +Y +N RIT EY++LK +ND AL L
Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNR-RITLEYILLKDVNDGKEHALEL 278
Query: 303 IKILKGIP--AKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+++ A +NLIP+NP +Y S+ + I F + +K+ G S +R G+DI
Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL+S R + +
Sbjct: 339 AACGQLRSKQIRKDAGGSRNAERE 362
>gi|310644715|ref|YP_003949474.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
polymyxa SC2]
gi|309249666|gb|ADO59233.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa SC2]
Length = 365
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 132/384 (34%), Positives = 209/384 (54%), Gaps = 26/384 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+KKES+ G+ ++L LL+ G + R Q+W +Y + I DF M+++ + L
Sbjct: 1 MKKESIYGLTLDQLTAWLLEHGY----KKSRALQVWDALYRKRITDFAAMTEVHENCTRL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++FSI E ++ S DGT K+L R IETV + K ++CV++QVG
Sbjct: 57 LAENFSIETLEEHVKQQSADGTVKFLFRLQ-----DGNLIETVLMRHKFGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+L++ EI+ Q++ + L G ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVGQIMKVQLYLDQ------------ERPGDRVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP NF N+ + + D GL+ +R IT+STSG I + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGQRHITVSTSGLADKIIEFADSDLHVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N++R ++ INR P+E L+ A +Y +N RIT EY++LK +ND AL L
Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNR-RITLEYILLKDVNDGKEHALEL 278
Query: 303 IKILKGIP--AKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+++ A +NLIP+NP +Y S+ + I F + +K+ G S +R G+DI
Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
AACGQL+S R + +
Sbjct: 339 AACGQLRSKQIRKDANSSRNAERE 362
>gi|237750344|ref|ZP_04580824.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis
ATCC 43879]
gi|229373874|gb|EEO24265.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis
ATCC 43879]
Length = 366
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 129/374 (34%), Positives = 198/374 (52%), Gaps = 32/374 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ +ELE + + R QI+ W+Y + + + M +I + ++ +L Q
Sbjct: 16 NIYSYHLDELESLIT--------PKFRAKQIYNWLYKHYVSNIESMKNIPKNLQEILKQT 67
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEKSRGTLCVS 119
FS + + + S DGT+K+L + V I E + + + T CVS
Sbjct: 68 FSFPNLKPIRIEESGDGTKKYLFQTSDGATFESVFIKMREKEYDENNRVKKSEKYTFCVS 127
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + C+FC T VRNL+A EI+ QV+ + K
Sbjct: 128 SQVGCRVGCAFCSTAKGGFVRNLSAGEIVEQVVALKRD--------------NNLSAHKS 173
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
NIV MGMGEPL N +NV K++ I S GL + RR T+STSG P I ++G GV
Sbjct: 174 INIVFMGMGEPLDNLNNVAKAIKILSHEEGLCIATRRQTISTSGIAPQIEKLGAMNLGVQ 233
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+A+SLHAV + LR+ L+P+N+ Y +E ++ A +++P L +RI FEY+++K IND
Sbjct: 234 IALSLHAVDDSLRSRLIPMNKVYNIERVLQALKNFP-LDTRKRILFEYLVIKDINDDLAS 292
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+K+L G AK+NLIPFNP E+ + F++ + + G + IR +G+DI
Sbjct: 293 AKKLVKLLHGFRAKVNLIPFNPHAESEFQRPCIDKMQGFADYLYKRGIVATIRESKGIDI 352
Query: 359 LAACGQLKSLSKRI 372
AACGQL++ +
Sbjct: 353 SAACGQLRAKQMKA 366
>gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421]
gi|81709852|sp|Q7NIV3|RLMN_GLOVI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421]
Length = 348
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 131/364 (35%), Positives = 193/364 (53%), Gaps = 31/364 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G EEL + G P R Q+ +W+Y RG+R ++D + R ++
Sbjct: 3 TPLLGQSAEELRIWVESQGQPA----YRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHS 58
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ ++V + + DGT K+LL +ETV IP R T+CVSSQVGC +
Sbjct: 59 V-PVGRSQVVRQSAAADGTIKYLL-----AGADGETVETVGIPAAERLTVCVSSQVGCPM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL EI+ QVL + GR++S++V MG
Sbjct: 113 ACRFCATGQSGFARNLGVHEIVDQVLTVQE-----------------GFGRRVSHVVFMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
MGEPL N V ++L + + +G+ +R+IT+ST G I R+G ++ + LA+SLHA
Sbjct: 156 MGEPLLNLGAVVQALRVLNGDIGIG--QRQITVSTVGVPGQIRRLGTYKLQITLAVSLHA 213
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ DLR L+P + YP+E L++ CR Y +N R++FEY +L GIND P A L I
Sbjct: 214 PNQDLRLKLIPTAQHYPIEELLEDCRDYVETTNR-RVSFEYTLLAGINDEPHHARELAAI 272
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + +NLIP+NP G EY + + F + R ++ +R RGL+ AACGQL
Sbjct: 273 LRGFQSHVNLIPYNPIEGVEYERPGEARVRAFERELVRHKIAASVRHTRGLEEAAACGQL 332
Query: 366 KSLS 369
+ S
Sbjct: 333 RRRS 336
>gi|224283162|ref|ZP_03646484.1| hypothetical protein BbifN4_04969 [Bifidobacterium bifidum NCIMB
41171]
gi|313140311|ref|ZP_07802504.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132821|gb|EFR50438.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 396
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 123/373 (32%), Positives = 186/373 (49%), Gaps = 26/373 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+ M +E +G+P + R Q+ + R + + +D+ R + +
Sbjct: 40 VHLVDMTPDERVAKAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVE 95
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + V +++ T K L R IE+V + +R TLC+SSQVGC
Sbjct: 96 AFFPPLIDEVTHQVADQGTTIKTLWRLFDGSH-----IESVLMRYPNRTTLCISSQVGCG 150
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EIL QV +A ++ D ++SNIV M
Sbjct: 151 MGCPFCATGKLGLTRNMSTGEILEQVRVAARMMRDGEVAGGPG---------RLSNIVFM 201
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V LA+S
Sbjct: 202 GMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLAAEGIPVRLAVS 261
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA S+ LR+ LVP+N+++ ++DA Y LS+ RR++ EY +++GIND A L
Sbjct: 262 LHAPSDALRDELVPMNKRFNTTQVLDAAHDYF-LSSKRRVSIEYALMRGINDQAEHARLL 320
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L A +N IP NP G + S +D F + + +G ++ +R RG DI
Sbjct: 321 AKRLNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDID 380
Query: 360 AACGQLKSLSKRI 372
ACGQL + +K
Sbjct: 381 GACGQLAAKTKEA 393
>gi|317133046|ref|YP_004092360.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3]
gi|315471025|gb|ADU27629.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3]
Length = 342
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 191/368 (51%), Gaps = 30/368 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K L M EEL +G P + Q++ W++ RG+ F M+D S+ R +L
Sbjct: 3 EKRDLKSMDIEELGAFFRALGAPA----YKAKQVFAWLH-RGVGSFDEMTDQSKAFRAVL 57
Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+H I + V S DGT K+L +ETV + ++C+S+Q G
Sbjct: 58 EEHALITRVQTVRRLESVLDGTVKYLFALS-----DGECVETVMMRYSYGDSVCISTQAG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC + L R+L E+L Q+L GRK+S++V
Sbjct: 113 CRMGCGFCASTLGGLHRSLAPSEMLDQILAV-----------------TKDTGRKVSHVV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEPL N++NV K L + S GL+ S R ++LST G V I R+ EE + L++S
Sbjct: 156 LMGIGEPLDNYENVVKFLHLLSCKGGLNMSLRHVSLSTCGLVDGIRRLMEEKLQLTLSVS 215
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ +R+ ++P+NRK+ + L+ ACR Y + RRI+FEY M+ G+ND+P A L
Sbjct: 216 LHAPNDAIRSSIMPVNRKWGVNTLLAACRDYIEAT-GRRISFEYAMIDGVNDTPACAKEL 274
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
L+G+ +NLIP NP Y S + + F + G + +R G DI A+C
Sbjct: 275 AARLRGMLCHVNLIPANPVKERSYQKSPAEKVERFRRLLAGFGLTVTVRRTLGADIQASC 334
Query: 363 GQLKSLSK 370
GQL+ ++
Sbjct: 335 GQLRQAAR 342
>gi|84498390|ref|ZP_00997187.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649]
gi|84381890|gb|EAP97773.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649]
Length = 392
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 119/385 (30%), Positives = 176/385 (45%), Gaps = 32/385 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E + A+ ++G H R Q+ + R + + M+D+ + VR L
Sbjct: 17 RHLADLSPAERKAAVEELG----HKGFRAKQLSTHYFERLVESPEDMTDLPKAVRDDLVA 72
Query: 67 HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + G K + R +E+V + R T+C+SSQ GC
Sbjct: 73 DLLPTLLTPVRTLEADRGATLKSVWRLH-----DGALVESVLMRYPKRVTICISSQAGCG 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF---------------PGCEDIEGM 170
+ C FC TG L RN++A EI+ QV+ A L + E
Sbjct: 128 MNCPFCATGQAGLTRNMSAAEIVEQVVDANRKLRHGALPAIGATHPAEAGLGDEAEDEDA 187
Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNI 228
++SN+V MGMGE L N+ ++ +D GL S R IT+ST G VP I
Sbjct: 188 ATKVGPERVSNVVFMGMGEALANYKAAIGAIRRLTDPTPDGLGMSARGITMSTVGLVPAI 247
Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
++ E I V LA+SLHA ++LR+ LVPIN ++ ++ IDA Y + RR++ EY
Sbjct: 248 DKLAAEGIPVTLALSLHAPDDELRDELVPINTRWKVDEAIDAAYRYFEAT-GRRVSIEYA 306
Query: 288 MLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
++K IND A L K L +N IP NP PG ++ S F E ++
Sbjct: 307 LIKDINDQAWRADLLGKKLTARGKGWVHVNPIPLNPTPGSKWTASRPGVEQQFVERLRAY 366
Query: 345 GYSSPIRTPRGLDILAACGQLKSLS 369
G + +R RG DI ACGQL + +
Sbjct: 367 GIPTTVRDTRGSDIDGACGQLAAAT 391
>gi|292670255|ref|ZP_06603681.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541]
gi|292648207|gb|EFF66179.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541]
Length = 346
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 129/363 (35%), Positives = 191/363 (52%), Gaps = 26/363 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ G +E L +L + IP R R QI +W+Y RG M ++ +E+R L +
Sbjct: 2 NIFGWTKEALAASLREHQIP----RFRADQIVRWMYQRGAVSLHAMDNLPKELRARLAEI 57
Query: 68 FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FSI P ++ + T K L F ETV + ++CVS+Q GC +
Sbjct: 58 FSIERPAVISRLHSADGATIKLLYEF-----ADGQTAETVLMRHAYGNSVCVSTQAGCRM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L RNLTA EI QV+ L + G + IV+MG
Sbjct: 113 GCAFCASTLNGLQRNLTAGEIAAQVIGIADFLR--------------AEGGHVDTIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL N+DNV +L + + + S R ITLSTSG VP I R+ EE I + L+ISLHA
Sbjct: 159 SGEPLENYDNVVAALRLLHEDYTIGLSYRGITLSTSGIVPGIERLAEEGIPISLSISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR+ ++P+NR YPL ++ A Y + R+T+EY++++ +ND PRDA L K+
Sbjct: 219 PTEELRSEIMPVNRMYPLADVLRAACFYAERTKR-RVTYEYILIRDVNDGPRDAEQLAKL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G A +NLIP NP D+ I F + + + ++ +R G DI AACGQL
Sbjct: 278 LRGQLASVNLIPINPVAERSLFRPDKAAIRRFQKILAQRHITATLRREMGTDIQAACGQL 337
Query: 366 KSL 368
++
Sbjct: 338 RNR 340
>gi|167630204|ref|YP_001680703.1| radical sam enzyme, cfr family, putative [Heliobacterium
modesticaldum Ice1]
gi|205829773|sp|B0TGT1|RLMN_HELMI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|167592944|gb|ABZ84692.1| radical sam enzyme, cfr family, putative [Heliobacterium
modesticaldum Ice1]
Length = 385
Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 191/365 (52%), Gaps = 18/365 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L G+ EE+ L G P R QI+KW+ R +R+ M+D+ Q +R L +
Sbjct: 33 TDLRGLFPEEIAALLTPWGQPT----FRGKQIFKWLQNRAVREVAEMTDLPQALRVRLGE 88
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +++ DGT K+L R + V + + R T+C+S+Q GC L
Sbjct: 89 AGWLKPLAPERHRVARDGTEKYLWRLADGELIESVLMPYRRAQTRDRVTVCLSTQAGCPL 148
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
+C FC TG Q RNLTA EI+ QVL K++N+V MG
Sbjct: 149 SCRFCATGRQGFRRNLTAAEIVGQVLDI------------THEKRKDDPDFKVTNLVFMG 196
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
MGEP N+DNV++++ + + G + +RRIT+ST+G VP I R + + V LA+SLHA
Sbjct: 197 MGEPFLNYDNVRRAIGLFTHPEGQAIGQRRITVSTAGIVPGIDRFADEDWEVNLALSLHA 256
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ R+ +P+N ++PL +++ACR Y + RR++ EY ++ G+ND DA L +
Sbjct: 257 ADDKQRSEWMPVNDRFPLAQVLEACRRYWEKT-RRRLSVEYALMAGVNDRLEDARRLASL 315
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
KG P +NLIP N G +++ F ++R G + IR RG DI AACGQL
Sbjct: 316 FKGWPIHLNLIPVNAVAGIGVRRPEREPTERFLAELRRWGVDAVIREERGQDIEAACGQL 375
Query: 366 KSLSK 370
+ +K
Sbjct: 376 RGAAK 380
>gi|289522515|ref|ZP_06439369.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289504351|gb|EFD25515.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 343
Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats.
Identities = 139/359 (38%), Positives = 199/359 (55%), Gaps = 27/359 (7%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ + ++ E L R R QI +WIY + I DFQ M+++S+E+R L
Sbjct: 8 LELDYDQWTETLTG---KFGLQRYRADQICQWIYQKKIFDFQEMTNLSKELRGKLADAVM 64
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+ P + E+ S DGT+K+L +F +E+V + ++ R T C+S+QVGC L C+
Sbjct: 65 VAPPILTREETSKDGTKKYLWQFH-----DGERVESVLLSQEGRLTACLSTQVGCPLACT 119
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC +G VR+L+ EI+ Q L L GR I N+V MGMGE
Sbjct: 120 FCASGEGGFVRDLSGGEIVGQFLAMEKL-----------------AGRDIDNVVYMGMGE 162
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248
P N ++V KS+ I ++ RRIT+ST+G VP I + E ++ V L++SLHA ++
Sbjct: 163 PFLNQESVFKSIKILNEPKMRGLGIRRITISTAGIVPGILALAEAQMPVKLSVSLHAPND 222
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
LR+ L+PIN+KYPL L++A R Y +N R+TFEY+ML+G+ND P A L +LKG
Sbjct: 223 RLRSKLMPINKKYPLASLLEALRRYQSATN-DRVTFEYLMLEGVNDLPEYAYELAALLKG 281
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
+ INLIP+N G +Y S I FS + + IR RG DI AACGQLK
Sbjct: 282 LSFYINLIPYNQVEGSKYKRSSAGRIKAFSNILSQLNIEHEIRRERGSDINAACGQLKR 340
>gi|253574078|ref|ZP_04851420.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846555|gb|EES74561.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
Length = 351
Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats.
Identities = 133/372 (35%), Positives = 201/372 (54%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+S+ GM +++L LL G H R R +W+ +Y + + F M + E L
Sbjct: 1 MNKQSIYGMTKDQLAAWLLDRG----HKRGRAEMVWEGLYRKRVTAFDAMEGVHPECLAL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + F I E + S DGT K+L R IETV + K ++CV++QVG
Sbjct: 57 LKEQFVIETLEEHVRQESIDGTIKFLFRLQ-----DGNLIETVLMRHKFGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+LT+ EI+ QV+ + L G ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKSRDLTSGEIVEQVMKVQMHLD------------RQGKGERVSHIV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DN+ L + D GL+ R IT+STSG I + ++ V LA+S
Sbjct: 160 VMGIGEPFDNYDNMADFLRVIQDPKGLAIGPRHITVSTSGLADKIIEFADSDLQVNLAVS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ P+E L+ A +Y +N R+T EY++LKG+ND A L
Sbjct: 220 LHAPNNELRTRIMKINKAIPIEKLMAAIDYYLERTNR-RLTIEYILLKGVNDGTEHAQEL 278
Query: 303 IKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+L +NLIP+NP +Y S+QK ++ F + +K+ G S +R G DI AA
Sbjct: 279 ADLLGDRFVNVNLIPYNPVDEHSQYQRSEQKSVLAFYDALKKRGLSVSVRLEHGADIDAA 338
Query: 362 CGQLKSLSKRIP 373
CGQL+S + P
Sbjct: 339 CGQLRSKQLKQP 350
>gi|329962041|ref|ZP_08300052.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057]
gi|328530689|gb|EGF57547.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057]
Length = 346
Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats.
Identities = 130/373 (34%), Positives = 194/373 (52%), Gaps = 29/373 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ L+G+ EL+ + +G+P QI W+Y + + M+++S + R
Sbjct: 1 MQKQPLLGLTLSELQSVVKNLGMPG----FAARQIASWLYDKKVTSIDEMTNLSLKHREY 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + VD S DGT K+L + G +E VYIP++ R TLCVSSQVG
Sbjct: 57 LKDAYEVGAAAPVDAMRSIDGTVKYLYQ-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------SSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L I + S G S+S +RITLS+ G + R EE LA+SL
Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAVSL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ +INLI F+ PG +D + + T + + G + IR RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVGLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACG 331
Query: 364 QLKSLSKRIPKVP 376
L + + K
Sbjct: 332 MLSTAKQEENKQE 344
>gi|289548506|ref|YP_003473494.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
gi|289182123|gb|ADC89367.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
Length = 347
Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 205/365 (56%), Gaps = 33/365 (9%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
++G EEL E ++ +G+ R R QI W+Y +G+ DF M++IS+ R +L + F
Sbjct: 4 ILGYTLEELREEVVSLGLE----RYRADQILNWVYKKGVTDFSLMTNISKRDRQVLAERF 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
S +++D+ + + K+L + +ETV I E+ TLCVSSQVGC++ C
Sbjct: 60 SFHTLQMIDKVEA-PDSVKYLFKTE-----DGHTVETVLIKERDHLTLCVSSQVGCAVGC 113
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
SFC T L+RNL EEI+ Q + + ++I N+V MGMG
Sbjct: 114 SFCATARDGLLRNLRTEEIIDQFIQVQK-----------------DSPQRIRNVVFMGMG 156
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---MLAISLHA 245
EPL N++NV+K++ + GL SKRR+++STSG + + ++ ++ + LA+S++A
Sbjct: 157 EPLANYENVRKAVKVMISPWGLDLSKRRVSVSTSGIISQLKKMAQDPVMRELNLAVSINA 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
S +LR ++PI++ PL L++ YP RRI EYV+++ +ND P AL L ++
Sbjct: 217 PSQELRERIMPISKTNPLHELMEVLYQYP-YPPDRRIMLEYVLIEKVNDEPEHALQLAQL 275
Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
LKG P K+NLIP+NP P Y + + F + + +G S+ +R +G+ + ACG
Sbjct: 276 LKGNPKKFKVNLIPYNPDPELPYRRPPLERVYRFQKILWDNGISTFVRFSKGVQVFGACG 335
Query: 364 QLKSL 368
QL+S
Sbjct: 336 QLRSR 340
>gi|219682208|ref|YP_002468592.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219621941|gb|ACL30097.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|311086023|gb|ADP66105.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086597|gb|ADP66678.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087180|gb|ADP67260.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|311087708|gb|ADP67787.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 363
Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats.
Identities = 157/364 (43%), Positives = 211/364 (57%), Gaps = 24/364 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K +L+ + R+ L+ L+ +G T Q+ WIY DF M +IS + R
Sbjct: 12 ISKINLLDLNRQNLKYFLISLG----AKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + I E ++EKIS DGT KW+ +IETVY+PEK R TLCVSSQ+G
Sbjct: 68 LYEKSYIFASEFIEEKISYDGTIKWITDI------NNQKIETVYMPEKKRSTLCVSSQIG 121
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL C FC TG + RNL EI+ Q+ A L + ++ + I+NIV
Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N NV +L+I D G SKRR+TLSTSG VP + ++ I V LAISL
Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
HA ++ +RNI++PINRKY + ++ + Y SNA R IT EYVML INDS A
Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNEHARQ 289
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L IP+KINLIP+N + G +LCS+ I F+ +++ G+++ IR RG DI AA
Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349
Query: 362 CGQL 365
CGQL
Sbjct: 350 CGQL 353
>gi|310287528|ref|YP_003938786.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
gi|311064441|ref|YP_003971166.1| radical SAM family protein [Bifidobacterium bifidum PRL2010]
gi|309251464|gb|ADO53212.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
gi|310866760|gb|ADP36129.1| Radical SAM family enzyme [Bifidobacterium bifidum PRL2010]
Length = 396
Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats.
Identities = 123/373 (32%), Positives = 186/373 (49%), Gaps = 26/373 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+ M +E +G+P + R Q+ + R + + +D+ R + +
Sbjct: 40 VHLVDMTPDERIARAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVE 95
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + V +++ T K L R IE+V + +R TLC+SSQVGC
Sbjct: 96 AFFPPLIDEVTHQVADQGTTIKTLWRLFDGSH-----IESVLMRYPNRTTLCISSQVGCG 150
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EIL QV +A ++ D ++SNIV M
Sbjct: 151 MGCPFCATGKLGLTRNMSTGEILEQVRVAARMMRDGEVAGGPG---------RLSNIVFM 201
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V LA+S
Sbjct: 202 GMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLTAEGIPVRLAVS 261
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA S+ LR+ LVP+N+++ ++DA Y LS+ RR++ EY +++GIND A L
Sbjct: 262 LHAPSDALRDELVPMNKRFNTTQVLDAAHDYF-LSSKRRVSIEYALMRGINDQAEHARLL 320
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L A +N IP NP G + S +D F + + +G ++ +R RG DI
Sbjct: 321 AKRLNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDID 380
Query: 360 AACGQLKSLSKRI 372
ACGQL + +K
Sbjct: 381 GACGQLAAKTKEA 393
>gi|224023722|ref|ZP_03642088.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM
18228]
gi|224016944|gb|EEF74956.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM
18228]
Length = 350
Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats.
Identities = 126/380 (33%), Positives = 198/380 (52%), Gaps = 30/380 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ K L+G +EL + +L +G+P + QI W+Y R + M+++S +
Sbjct: 1 MDST-KAPLLGKTLDELTQIVLDLGMP----KFTAGQIASWLYGRKVASIDEMTNLSVKN 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + + + V E S DGT K+L R P +E+VYIP+ R TLCVSS
Sbjct: 56 RERLKECYEVGATAPVHEMRSVDGTVKYLFRTP-----EGDYVESVYIPDADRATLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG Q +LTA +IL Q+ ++
Sbjct: 111 QVGCKMNCKFCMTGKQGYTNSLTAAQILNQIYSI-------------------PERDTLT 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V MGMGEP N D V ++L I + S G ++S +RIT+S+ G + R +E LA
Sbjct: 152 NVVFMGMGEPFDNLDEVLRALEILTASYGYAWSPKRITVSSVGLRKGLRRFLDESDCHLA 211
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH+ R L+P + + + ++D R Y S RR++FEY++ KG+NDS A
Sbjct: 212 ISLHSPFPAQRQELMPAEKAFSIVEIVDILRQY-DFSKQRRLSFEYIVFKGVNDSLIYAK 270
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+++L+G+ ++NLI F+ P + +D + ++ F + + + G + IR RG DI A
Sbjct: 271 ELVRLLRGLDCRMNLIRFHAIPNVDLEGADMETMLAFRDYLTQHGLFATIRASRGEDIFA 330
Query: 361 ACGQLKSLSKRIPKVPRQEM 380
ACG L + ++ K + +
Sbjct: 331 ACGMLSTAKQQANKQNNETV 350
>gi|297571184|ref|YP_003696958.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM
20595]
gi|296931531|gb|ADH92339.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM
20595]
Length = 426
Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats.
Identities = 123/378 (32%), Positives = 183/378 (48%), Gaps = 25/378 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + R E + +G PQ R QI K + D + M+D+ R +
Sbjct: 31 KHMADLTRAERRALVADLGYPQ----FRADQISKHYFEHDCADPEKMTDLPAAQR---KE 83
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++ P+++ + + ++ + +E+V + R TLC+SSQ GC +
Sbjct: 84 ITQVLLPQLMTKVKDQVADKGATIKTLWKLF-DGAVVESVLMKYPQRATLCISSQAGCGM 142
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ Q+ AR L E + +++N+V MG
Sbjct: 143 ACPFCATGQAGLTRNLSTAEIIEQLRYARELAASGIFGEPV----------RVTNVVFMG 192
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL NF V+ +L G S R IT+ST G VP I ++ +E V LA+SL
Sbjct: 193 MGEPLANFPAVRGALRRMIEPAPEGFGMSARNITVSTVGMVPVINKLADEGLPVTLAVSL 252
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR+ L+PIN +Y + L+DA RHY + RR++ EY ++K +ND A L
Sbjct: 253 HAPDDALRDDLIPINSRYKVGELLDAARHYF-VRTGRRVSIEYALIKDMNDHEWRAELLA 311
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + CS + TF + +G S+ IR RG DI
Sbjct: 312 AELNSRGHGWAHVNPIPLNPTPGSIWTCSTPETTRTFVRTLSDAGISTTIRDTRGSDIDG 371
Query: 361 ACGQLKSLSKRIPKVPRQ 378
ACGQL + V R+
Sbjct: 372 ACGQLAAEVVDREHVSRR 389
>gi|111023545|ref|YP_706517.1| hypothetical protein RHA1_ro06586 [Rhodococcus jostii RHA1]
gi|123144166|sp|Q0S277|RLMN_RHOSR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|110823075|gb|ABG98359.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 369
Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 179/372 (48%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + L + E EA+ ++G+P R Q+ + Y R D + M+D+ VR
Sbjct: 16 MPPKHLADLDSAERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVREQ 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ V G + L +E+V + R TLC+SSQ G
Sbjct: 72 VGAALFPTLLTPVKHLACDGGDTRKTL----WKANDGTLLESVLMRYPDRATLCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + L D ++SN+V
Sbjct: 128 CGMACPFCATGQGGLQRNLSTAEIVDQVRAAAAALRDGDVHGGPG---------RLSNVV 178
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V ++ GL S+R +T+ST G P I ++ +E V LA
Sbjct: 179 FMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEDLSVTLA 238
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND P A
Sbjct: 239 VSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQPWRAD 297
Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K L+ +NLIP NP PG E+ S + F + G S +R RG +
Sbjct: 298 LLGKKLRKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTRGQE 357
Query: 358 ILAACGQLKSLS 369
I AACGQL + +
Sbjct: 358 IAAACGQLAAEN 369
>gi|75909016|ref|YP_323312.1| ribosomal RNA large subunit methyltransferase N [Anabaena
variabilis ATCC 29413]
gi|123772627|sp|Q3M9B9|RLMN_ANAVT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|75702741|gb|ABA22417.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena variabilis ATCC
29413]
Length = 355
Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats.
Identities = 128/364 (35%), Positives = 187/364 (51%), Gaps = 31/364 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EL + + G P R Q+ WIY +G+R +S S++ R +
Sbjct: 22 LLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV- 76
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I ++ DGT K+LL+ +ETV IP R T+CVS+QVGC + C
Sbjct: 77 PIGRSTIHHRSVASDGTVKYLLQLS-----DGEIVETVGIPTDKRLTVCVSTQVGCPMAC 131
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNL EI+ QVL + +++S++V MGMG
Sbjct: 132 DFCATGKGGYKRNLERHEIVDQVLTVQEDF-----------------QQRVSHVVFMGMG 174
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N +NV +L + +G+ +R +TLST G I+++ E V LA+SLHA +
Sbjct: 175 EPLLNTENVLAALRSLNQDVGIG--QRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPN 232
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P R Y +E L+ CR Y ++ RRI+FEY++L G+ND P AL L K L+
Sbjct: 233 QALREQLIPSARSYHIEDLLAECREYVAIT-GRRISFEYILLAGVNDLPEHALELSKHLR 291
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G +NLIP+NP +Y I F +++ + +R RGL+ AACGQL++
Sbjct: 292 GFQNHVNLIPYNPISEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRT 351
Query: 368 LSKR 371
+ R
Sbjct: 352 KTSR 355
>gi|281419754|ref|ZP_06250753.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205]
gi|281406283|gb|EFB36963.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205]
Length = 355
Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats.
Identities = 131/382 (34%), Positives = 200/382 (52%), Gaps = 31/382 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K+ L+G+ EL++ +G+P Q+ KW+Y + ++ M++IS+
Sbjct: 1 MNN-EKKYLLGLTLAELKQVAKDLGMPA----FTGGQMAKWLYEQHVKSIDEMTNISKAN 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I D + S DGT K+L + +ETVYIP+K R TLCVSS
Sbjct: 56 RAKLAAEYEIGCFGYSDAQHSVDGTIKYLFPTRS-----GKFVETVYIPDKDRATLCVSS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG Q +L A +IL QV K++
Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLPAGDILNQVYSL-------------------PEVDKLT 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIV MG GEP+ N DNV ++ I + + G ++S +RIT+S+ G + R EE +A
Sbjct: 152 NIVFMGQGEPMDNLDNVLRATEILTANYGWAWSPKRITVSSVGVKNKLKRFLEESDCHVA 211
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
IS+H R L+P R +E +++ R+Y S+ RR++FEY++ KG+NDS + A
Sbjct: 212 ISMHDPIPSERAELMPAERGMGIEQVVELLRNY-DFSHQRRLSFEYIVFKGVNDSMQHAK 270
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+IK++KG+ + NLI F+ P D + + F + + + G + IR RG DI A
Sbjct: 271 AIIKLVKGLDCRFNLIRFHQIPDIPLQGVDDEKMEQFRDYLTQHGVFTTIRASRGQDIYA 330
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACG L S SK+I ++ E +
Sbjct: 331 ACGLL-STSKKIGEIREHEDEE 351
>gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
Length = 349
Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats.
Identities = 135/341 (39%), Positives = 191/341 (56%), Gaps = 21/341 (6%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
R +QI W++ RG+ DF M+D+ + +R L + + + ++V+ S DG+ K+L
Sbjct: 17 YRKAQIAHWVFARGVLDFAEMTDLPKGLREALAREWRVSEFQLVEAYPSKDGSVKYLFTL 76
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
+ E VY+P K+R T+C+SS VGC C+FC TG RNLTA EIL Q+L
Sbjct: 77 L-----DGKKTEAVYMPYKNRKTVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLL 131
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
G P R+I N+V+MGMGEPL N NV K++ + L+
Sbjct: 132 AIAHHQGLSP--------------REIRNVVLMGMGEPLLNLTNVLKAIRVMLHPKALAM 177
Query: 213 SKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
S RRITLST G I R+ EE GV LA+SLHA ++ R ++P +YP+ ++ A R
Sbjct: 178 SPRRITLSTVGIPRGILRLAEEDVGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMAAVR 237
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
Y + R+TFEY +LKG+ND A L K+LKGI A +NLIPFNPW + +
Sbjct: 238 RYYERTKR-RVTFEYTLLKGLNDHLWQARLLAKLLKGISAHVNLIPFNPWENAPVEGTPK 296
Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
I+ F+E ++R G S+ IR RG D+ AACGQL + +
Sbjct: 297 AGILAFAEELRRLGVSTSIRWSRGRDVGAACGQLALKAPKA 337
>gi|187734933|ref|YP_001877045.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
BAA-835]
gi|205829710|sp|B2UNF2|RLMN_AKKM8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|187424985|gb|ACD04264.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
BAA-835]
Length = 359
Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats.
Identities = 129/371 (34%), Positives = 203/371 (54%), Gaps = 28/371 (7%)
Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
E+L L + G H + RT Q+ W++ + + F MS++ +++LL ++F
Sbjct: 11 TEEKLLAFLTEHG----HTKFRTQQVLDWVWRKRVTTFDAMSNLPPALKNLLAENFRFHT 66
Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE---KSRGTLCVSSQVGCSLTCS 129
PEIV+ S D TRK+L + + V I R TLCVSSQVGC+ C
Sbjct: 67 PEIVEIHGSADTTRKFLTKMEDGSLVESVIIPAAAAENGEKSERVTLCVSSQVGCAFGCK 126
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC +G L R+LT EI+ Q+L A ++ G++++NIV MGMGE
Sbjct: 127 FCASGLLGLKRHLTTGEIIGQILSAEAI-----------------AGKRVNNIVFMGMGE 169
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSN 248
PL NFDN+ +L I + GL R IT+STSGFVP + ++ + LA+SLH ++
Sbjct: 170 PLSNFDNLADALEIITSHRGLEIGARHITISTSGFVPGLKKLAAYPRQIRLAVSLHGATD 229
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
++R+ ++P+N+K+PL LI A + N T EY++++ INDSP+DA +L++I K
Sbjct: 230 EVRDQIMPVNKKWPLSQLIPALEEWNRGRNQMP-TLEYILIRDINDSPKDASHLVRIAKR 288
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ AK+NLIP+N G + ++ +F + + ++ +R +G DI AACGQL+
Sbjct: 289 LHAKVNLIPYNTVEGLPWKRPSEERCRSFRDAVHKARIPVTMRYEKGHDINAACGQLRLR 348
Query: 369 SKRIP--KVPR 377
++ K R
Sbjct: 349 KEQEKSGKTSR 359
>gi|306822705|ref|ZP_07456083.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
gi|304554250|gb|EFM42159.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
Length = 393
Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 188/375 (50%), Gaps = 28/375 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L M +E ++G+P R R Q+ Y D + SD R
Sbjct: 38 KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F V +++ + T K L R IE+V + +R TLC+SSQV
Sbjct: 94 AAEAFFPTLITEVTRQVADEGTTIKTLWRL-----FDGSLIESVLMRYPTRTTLCISSQV 148
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++A EI+ QV +A + D ++SNI
Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPG---------RLSNI 199
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A
Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDITQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F + + ++G ++ +R RG
Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 378
Query: 357 DILAACGQLKSLSKR 371
DI ACGQL + ++
Sbjct: 379 DIDGACGQLAAKERQ 393
>gi|222823067|ref|YP_002574640.1| radical SAM enzyme (Cfr family) [Campylobacter lari RM2100]
gi|254807160|sp|B9KEA4|RLMN_CAMLR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|222538288|gb|ACM63389.1| conserved hypothetical protein, radical SAM enzyme (Cfr family)
[Campylobacter lari RM2100]
Length = 356
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 135/378 (35%), Positives = 203/378 (53%), Gaps = 32/378 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ ++++ +EELE + + R QI++W+Y + DF MS + ++ R
Sbjct: 1 MSELKNMLDFTKEELENLV--------QPKFRAKQIFEWVYKKYADDFLQMSSLPKDFRV 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L ++F + V ++ S DG+ K+L V + I + +R
Sbjct: 53 YLQKNFHFSPLKCVKDEKSKDGSIKYLFELLDGKKIEAVLLPMKEELVDENGKIIKHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLSRNLSAGEIVGQILWIKKH--------------NKI 158
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ NIV MGMGEPL N NV K++ I +D+ L+ S RR T+STSG I +GE
Sbjct: 159 PYERRVNIVYMGMGEPLDNLKNVSKAVKILADNDALAISPRRQTISTSGLAKQIKELGEM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR+ L+PIN+ Y + +++A R++P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRSELMPINKAYNIASIMEAVRNFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKIEHAKELVKLLNGIKAKVNLILFNPHEGSLYNRPSVENAIKFQDYLSAKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSKR 371
+GLDI AACGQLK +
Sbjct: 338 KGLDISAACGQLKERQSK 355
>gi|91200995|emb|CAJ74052.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 368
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 137/372 (36%), Positives = 197/372 (52%), Gaps = 26/372 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN L+ S+ + E E +G P R QI W+Y +G DF MSDI
Sbjct: 1 MNKLQLTSITELDLSESVELCRSLGEP----SYRGKQILSWMYKKGATDFNQMSDIPLPF 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + ++ +I S DGT K+L+ P IE V + + R T CVS+
Sbjct: 57 REKLEEAHNVFQTKIHTINTSQDGTEKFLIHLP-----DNNLIECVLLRDGKRRTACVST 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ CSFC +G L RNL EI+ QVL ++ L I+
Sbjct: 112 QVGCAMGCSFCASGVLGLTRNLKTGEIIEQVLHIKNHL---------------PANEHIT 156
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MG+GEPL N+D V KSL I + GL+ R IT+ST G + I R+ +E V L
Sbjct: 157 NIVFMGIGEPLANYDKVVKSLRIMNADWGLAIGARNITISTVGLIEGIRRLAKEGLKVNL 216
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISLHA +++ RN LVP N K ++ ++ A + Y ++ I+FEY M+ GINDS +DA
Sbjct: 217 AISLHASNDNTRNKLVPSNSKTGIKNILGAAQEYFNATHRD-ISFEYTMIDGINDSKQDA 275
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +ILKG+ +N++P NP + QK + TF +K G + +R +G+++
Sbjct: 276 KLLAQILKGVQCNVNILPVNPIKEGNFAPPVQKTVETFCTVLKNHGIVATVRQRKGINVN 335
Query: 360 AACGQLKSLSKR 371
AACGQL+ ++
Sbjct: 336 AACGQLRLQIQK 347
>gi|326382905|ref|ZP_08204595.1| ribosomal RNA large subunit methyltransferase N [Gordonia
neofelifaecis NRRL B-59395]
gi|326198495|gb|EGD55679.1| ribosomal RNA large subunit methyltransferase N [Gordonia
neofelifaecis NRRL B-59395]
Length = 371
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 122/371 (32%), Positives = 179/371 (48%), Gaps = 27/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + +A+ +G+P + R +Q+ K Y R D M+D+ R + +
Sbjct: 21 KHFADLDEQGRIDAVADLGLP----KFRANQLAKQYYGRLNADVDEMTDLPAGKRDAVGE 76
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V D TRK L R +E+V + R TLC+SSQ GC
Sbjct: 77 KLFPTLMTPVRHISCDDDSTRKTLWRLH-----DGTLLESVLMRYPERNTLCISSQAGCG 131
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A L D E ++SNIV M
Sbjct: 132 MACPFCATGQGGLDRNLSTAEIVDQVRAAARALRDGEVGEPG----------RLSNIVFM 181
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V ++ G S R +T+ST G P I R+ +E V LA+S
Sbjct: 182 GMGEPLANYKRVVDAVRKITSPSPDGFGISARSVTVSTVGLAPAIRRLADEGLSVTLAVS 241
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++ + +++A R+Y S RR++ EY +++ +ND P A L
Sbjct: 242 LHTPDDELRDTLVPVNNRWSVAEVLEAARYYAD-STGRRVSIEYALIRDVNDQPWRADLL 300
Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L+ +NLIP NP PG E+ S + F ++ G S +R RG +I
Sbjct: 301 GKKLRQALGSLVHVNLIPLNPTPGSEWDASPKPVEAEFVRRVREHGVSCTVRDTRGQEIA 360
Query: 360 AACGQLKSLSK 370
AACGQL + K
Sbjct: 361 AACGQLAAEEK 371
>gi|329956949|ref|ZP_08297517.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056]
gi|328523706|gb|EGF50798.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056]
Length = 345
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 29/371 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+G+ EL+ + +G+P QI W+Y + M+++S + R LL
Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYDKKAASIDEMTNLSLKHRELLK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVGC
Sbjct: 58 EIYEVGGEAPVDAMRSADGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLTA +I+ Q+ K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------------------NSLPERDKLTNVVMM 153
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N D V K+L + + S G +S +RITLS+ G + R EE LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAISLHS 213
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+
Sbjct: 214 PVPLQRRELMPAEKAFSIAEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ ++NLI F+ PG + +D + + T + + G + IR RG DI AACG L
Sbjct: 273 LRGLDCRVNLIRFHAIPGVDLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACGML 332
Query: 366 KSLSKRIPKVP 376
+ + K
Sbjct: 333 STAKQEENKEE 343
>gi|330813248|ref|YP_004357487.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Pelagibacter sp. IMCC9063]
gi|327486343|gb|AEA80748.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Pelagibacter sp. IMCC9063]
Length = 356
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 157/373 (42%), Positives = 235/373 (63%), Gaps = 19/373 (5%)
Query: 4 LKKESLIGMMREELEEALLKI-GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ + + +L + + + ++ MRT+QIWK++Y +G+R+ S+IS E+++
Sbjct: 1 MNFSNFYDLSYSDLSDFISSNFSLEKKKTSMRTNQIWKFVYKKGLRETSKFSNISSELKY 60
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + F+ I ++KIS DGT KWLL+ +ETV+IP RGTLCVSSQV
Sbjct: 61 NIEKSFNFNRTNIAEKKISKDGTIKWLLKLS-----DNNLVETVFIPSGKRGTLCVSSQV 115
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C FC+TGTQ +V+NLT EI+ Q+L+A+ L D+ +KI+NI
Sbjct: 116 GCTLNCKFCHTGTQLMVKNLTTHEIINQILVAKDELNDWGS------------QKKITNI 163
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEP N+DNVKKS+SI + GL +S ++IT+ST+G I + +EIG LA+S
Sbjct: 164 VYMGMGEPFYNYDNVKKSISILRERNGLDYSAKKITVSTAGISNEIMKAADEIGTYLALS 223
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++LR ++PIN+K+ ++ LI++C +Y + N +I EYV+LK IND+ A L
Sbjct: 224 LHAPTDELREKIMPINKKFKIKDLIESCSYYSKI-NKEKIFLEYVLLKDINDTDSCAQQL 282
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K++ P+K+NLI FN WPG Y SD + + F E IK+SG+ +R RG DIL AC
Sbjct: 283 VKLMSKFPSKLNLIEFNAWPGVGYEPSDSETVQKFYEKIKKSGHIVTLRKSRGEDILGAC 342
Query: 363 GQLKSLSKRIPKV 375
GQLK+ S++ K
Sbjct: 343 GQLKTDSEKKRKS 355
>gi|296123027|ref|YP_003630805.1| radical SAM protein [Planctomyces limnophilus DSM 3776]
gi|296015367|gb|ADG68606.1| radical SAM enzyme, Cfr family [Planctomyces limnophilus DSM 3776]
Length = 408
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 121/364 (33%), Positives = 180/364 (49%), Gaps = 26/364 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ EL + + G+P R QI + I+ F M+++ ++R LL F
Sbjct: 58 IYEKSPAELVQWCQEQGLPT----YRAGQIQQQIFPNRATQFGEMTNLPAKLRELLAATF 113
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+++ E+V +I+ D T K LL+ +E V + E R T+C+S+QVGC + C
Sbjct: 114 TLLPSEVVAHQIAKDRTEKLLLQLH-----DGSLVECVLMREDDRRTICISTQVGCGMGC 168
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC +G L RNLT EIL QVL LL K++N+V+MGMG
Sbjct: 169 VFCASGLLGLKRNLTTGEILEQVLRLDRLL---------------PADEKLTNVVVMGMG 213
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
EPL N N+ +L + GL RRIT+ST G I + + LA+SLHA
Sbjct: 214 EPLANLKNLLPALDRLTADDGLGLGARRITVSTVGLPEKIRELAQTGHQFNLAVSLHAPE 273
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+LR LVP+N+ +E +++A Y ++ RR+++EYV+L GIND P A L +LK
Sbjct: 274 AELRTKLVPVNKNIGIEAVLEAADDYFAIT-GRRVSYEYVLLGGINDLPEHARQLGHLLK 332
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
A +NLIP N + F ++ G +R +G DI AACGQL+
Sbjct: 333 SRIAHVNLIPMNGVKELPFAEPSAPQTGEFVAILESFGVPVTVRKRKGADIDAACGQLRM 392
Query: 368 LSKR 371
++
Sbjct: 393 KREQ 396
>gi|15616897|ref|NP_240110.1| hypothetical protein BU286 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681651|ref|YP_002468037.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
gi|257471340|ref|ZP_05635339.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11387286|sp|P57373|RLMN_BUCAI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|25320166|pir||D84963 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10038961|dbj|BAB12996.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219624494|gb|ACL30649.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
Length = 363
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 157/364 (43%), Positives = 212/364 (58%), Gaps = 24/364 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K +L+ + R+ L+ L+ +G T Q+ WIY DF M +IS + R
Sbjct: 12 ISKINLLDLNRQNLKYFLISLG----AKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + I E ++EKIS DGT KW+ +IETVY+PEK R TLCVSSQ+G
Sbjct: 68 LYEKSYIFASEFIEEKISYDGTIKWITDI------NNQKIETVYMPEKKRSTLCVSSQIG 121
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CSL C FC TG + RNL EI+ Q+ A L + ++ + I+NIV
Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N NV +L+I D G SKRR+TLSTSG VP + ++ I V LAISL
Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
HA ++ +RNI++PINRKY + ++ + Y SNA R IT EYVML INDS +A
Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNENARQ 289
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L IP+KINLIP+N + G +LCS+ I F+ +++ G+++ IR RG DI AA
Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349
Query: 362 CGQL 365
CGQL
Sbjct: 350 CGQL 353
>gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
Length = 347
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 131/367 (35%), Positives = 196/367 (53%), Gaps = 30/367 (8%)
Query: 10 IGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ M +E E + +G+ R RT QI +WIY + + + M+++ +++R L
Sbjct: 8 LEMNYDEWLEFCTEKLGL----QRYRTDQICQWIYEKKVFNIYDMTNLGKDLREDLAYKI 63
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I+ P +V ++ S DGTRK+L + IE+V + + T C+SSQVGC L C
Sbjct: 64 LILPPSLVKQETSKDGTRKFLWQLQ-----DGQRIESVLLSHGNHNTACISSQVGCPLAC 118
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+FC TG VRNLT EI+ Q L + G+ I+NIV MGMG
Sbjct: 119 AFCATGKGGFVRNLTPGEIVGQFLAMEK-----------------AAGQNITNIVFMGMG 161
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
EPL N + + KS+ I + R +T+ST+G VP I + E EI V L++SLH +
Sbjct: 162 EPLLNQEALFKSIKILNHPKMRGLGARHMTISTAGIVPGIRALTELEIPVRLSVSLHGTN 221
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ LRN L+PIN++YPL LI+A R Y + R+T EYVM+ +ND+ A L ++
Sbjct: 222 DMLRNKLMPINQQYPLGSLIEALRDYQQKT-GDRVTIEYVMIDRVNDNTEQAYELAALMN 280
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G+ +NLIP+NP Y S Q+ I F + + IR +G DI AACGQL+
Sbjct: 281 GLSIYVNLIPYNPVD-ATYRRSSQERIKAFGKILSELNIEYEIRREKGSDINAACGQLRR 339
Query: 368 LSKRIPK 374
+++ +
Sbjct: 340 QNEKSSR 346
>gi|313203119|ref|YP_004041776.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312442435|gb|ADQ78791.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 350
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 130/370 (35%), Positives = 194/370 (52%), Gaps = 29/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L G+ +L+ +L +G+P SQ+ W+Y + + D M+++S++ R L Q
Sbjct: 7 KNLFGLTLPQLKAEVLALGLPA----FTASQLADWMYKKRVTDIGSMTNLSKQAREKLQQ 62
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+S+ V + S DGT+K+L + IE YIP+K R TLCVS+Q+GC +
Sbjct: 63 AYSLHLVPSVSVQTSTDGTKKYLYPTRPQKF-----IEAAYIPDKDRATLCVSTQIGCKM 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q NLT EIL Q+ K++NIV MG
Sbjct: 118 GCLFCMTGKQGFQGNLTTGEILNQM-------------------QSLPEFDKLTNIVYMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N V S+ + + G +S +RIT+ST G +P + E LA+SLH+
Sbjct: 159 MGEPLDNVQAVMDSIEVMTSPWGYDWSPKRITVSTIGIIPAMMTFLENSKAHLAVSLHSP 218
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+D R ++PI YP+ ++ R + L + RR++FEY+M KG+ND+PR A L+++L
Sbjct: 219 FDDERRDIMPIQSVYPITEVVSNIRRW-ELGSQRRVSFEYIMFKGVNDTPRHANELVRLL 277
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
GI +INLI F+P P + +DIV F +K G + IR RG DI AACG L
Sbjct: 278 NGIKCRINLIRFHPIPDTPLEGTALEDIVDFQNRLKAKGLTVTIRASRGEDIFAACGMLS 337
Query: 367 SLSKRIPKVP 376
+ +
Sbjct: 338 TKELIKKQTE 347
>gi|265762562|ref|ZP_06091130.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
2_1_16]
gi|263255170|gb|EEZ26516.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
2_1_16]
Length = 344
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ +G+P QI W+Y + + M+++S + R L
Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVG
Sbjct: 57 LKGEYDLGISAPVDEMRSVDGTVKYLYQVS-----DNHFVEAVYIPDEDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q +LTA +IL Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAAL-------------------PERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGTGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331
Query: 364 QLKSLSK 370
L + +
Sbjct: 332 MLSTAKQ 338
>gi|225164328|ref|ZP_03726595.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
gi|224801062|gb|EEG19391.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
Length = 375
Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats.
Identities = 122/376 (32%), Positives = 193/376 (51%), Gaps = 19/376 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L G + L L + G R QI W+Y + R + M+++S+ +R L
Sbjct: 7 KPFLTGETLDSLTARLREHG----EQTFRARQILDWVYKKRARSWDDMTNLSKALRAWLA 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCVS 119
+ F +I +V +K S D VE + P E SR T+C+S
Sbjct: 63 ETFVLIPAALVLDKQSHDAHDATDKLLLELGDASLVETVIIRAPQDGVGLEHSRKTICIS 122
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+QVGC++ C+FC +G L R+L A EI+ Q+L ED S
Sbjct: 123 TQVGCAMACAFCASGLAGLKRDLLAGEIVAQLLHV-------CYREDARTPRARSELASF 175
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
NIV+MGMGEPL N+D + ++L I + GL RRITLSTSG VP I ++ +E G+
Sbjct: 176 DNIVVMGMGEPLANYDAIVRALRIVNAEWGLGVGARRITLSTSGLVPKILKLADEDLGIR 235
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLH ++++R ++P+N+ +PL LI A + + N R +T E+++++ +ND+
Sbjct: 236 LAISLHGATDEVRERIMPVNKAFPLAKLIPAVKTFSEK-NGRMVTLEFILIEEVNDTIEQ 294
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L I + + A +NLIP+N G + F++ ++ + S +R +G DI
Sbjct: 295 AEALCYIARDLHAHVNLIPYNTVEGLLWKRPSLTRQERFADVLRAARVSVTLRREKGHDI 354
Query: 359 LAACGQLKSLSKRIPK 374
AACGQL+ +++ +
Sbjct: 355 DAACGQLRLKTEKERE 370
>gi|315919828|ref|ZP_07916068.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693703|gb|EFS30538.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 344
Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats.
Identities = 132/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ ++G+P QI W+Y + + M+++S + R L
Sbjct: 1 MSKYPLLGMTLVELQSLAKRLGMPG----FTAKQIVSWLYEKKVASIDEMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q++ + VDE S DGT K+L + G +E+VYIP+ R TLCVSSQVG
Sbjct: 57 LKQNYEVGAAAPVDEMRSVDGTVKYLYKV-----GENHFVESVYIPDDDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTANYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P R Y + +++ ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPLTAQRSELMPAERAYSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331
Query: 364 QLKSLSK 370
L + +
Sbjct: 332 MLSTAKQ 338
>gi|325478666|gb|EGC81777.1| 23S rRNA m2A2503 methyltransferase [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 341
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 198/368 (53%), Gaps = 30/368 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
KE++ +ELEE + G + R Q+++ I+V I DF M+D+S+++R L+
Sbjct: 2 KENINDKSIKELEEIFEENGY----KKFRAKQVYRQIHVNKINDFSKMTDLSKDMREALD 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + ++ E +S D T+K+L IE+VY+ ++R T+C+SSQVGC
Sbjct: 58 KKYKFSSLKLRREFVSKIDSTKKYLFELE-----DGNIIESVYMEYENRKTICISSQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + LVRN+TA E++ +V + GD I+NIV+
Sbjct: 113 RMGCKFCASTKNGLVRNMTAAELIEEVYELERINGD------------------INNIVI 154
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG+GEPL N+DN+KK + I +D G + S R ITLSTSG P I ++ + + LA+SL
Sbjct: 155 MGIGEPLDNYDNIKKFIEIITDEKGRNLSHRSITLSTSGLAPMIIKLADSGLDINLALSL 214
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H + R +P++ KY + L+ A +Y + R++FEYV++ G+N+ D NL+
Sbjct: 215 HYADDKKRRQFMPVSNKYSIRELMKATDYYLDKTKR-RVSFEYVVIDGVNNLDEDVDNLV 273
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG INLIP NP Y + F + + ++ IR G DI A+CG
Sbjct: 274 RLLKGKNVHINLIPLNPIEEFSYNKPKNTALKEFRDKLVSKKLNATIRRSMGSDIDASCG 333
Query: 364 QLKSLSKR 371
QL++ R
Sbjct: 334 QLRNNYAR 341
>gi|319760652|ref|YP_004124590.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia vafer str. BVAF]
gi|318039366|gb|ADV33916.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia vafer str. BVAF]
Length = 359
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 137/366 (37%), Positives = 202/366 (55%), Gaps = 16/366 (4%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
LKK +L+ M ++L K+G R+ QI WIY + DF M+++ +++R
Sbjct: 2 MLKKINLLDMSPKKLLVFFNKLG----ECAFRSDQIMDWIYKKYCSDFNKMTNLHKDLRV 57
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LNQ I P I E+ S DGTRKW++R +ETVYIP+ +R TLC+SSQ
Sbjct: 58 KLNQISEINAPIITHEQESSDGTRKWMMRIHDDKY-----VETVYIPDNNRATLCISSQS 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L CSFC T ++NL EI+ QV + + + + I++I
Sbjct: 113 GCALGCSFCGTAKLGFIKNLRTSEIVGQVWRIARFISHYNKQQVKNCNNLI----PITHI 168
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N NV S+ I +S G + SK +TLSTSG VP I ++ + + V LA+S
Sbjct: 169 VFMGMGEPLLNLMNVVSSIQIILNSSGFNLSKHHVTLSTSGVVPGIDKLKDMVDVSLAVS 228
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300
LHA ++ +RN ++PIN+KY ++ L+ + R Y + + ++T EYV+L IND A
Sbjct: 229 LHAPNDVIRNKIMPINKKYNIDCLLQSIRCYLQKTKSNNKKVTIEYVLLNRINDEIEHAH 288
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L K L +P K+NL+ +N +Y + + F + +K G + IR RG DI
Sbjct: 289 ELAKKLITLPCKVNLMRWNSIKNIKYLKSTSDARLNNFYKVLKNYGIVTTIRKVRGADIH 348
Query: 360 AACGQL 365
A+CGQL
Sbjct: 349 ASCGQL 354
>gi|325680303|ref|ZP_08159863.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
gi|324108012|gb|EGC02268.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
Length = 348
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 127/367 (34%), Positives = 201/367 (54%), Gaps = 30/367 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ ++G+M EELEE +L IG + R QI++W++V+ + F M+++S ++R L
Sbjct: 9 RIDILGLMPEELEEQILLIG----EKKFRAKQIFEWLHVKRVDSFDKMTNLSVQLRDKLK 64
Query: 66 QHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F + IV S K+L R P +E+V + T+CVS+QVGC
Sbjct: 65 KIFCLKSLFIVKRLESNTDNTVKYLYRLP-----DGNHVESVIMEYNHGNTVCVSTQVGC 119
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + R+L+A EILLQ+ A GRKI V+
Sbjct: 120 KMGCKFCASTIAGYKRDLSASEILLQIYEAER-----------------DSGRKIGGAVL 162
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG+GEPL N+DNV L + S G++ S R +++ST G VP I + E ++G+ L++SL
Sbjct: 163 MGIGEPLDNYDNVVGFLKVLSCEAGMNMSLRHVSVSTCGLVPRIYELAELKLGITLSVSL 222
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N R+ ++P+N +Y + L+ ACR+Y ++ RRI+FEY ++ G NDS A L
Sbjct: 223 HATNNRARSEIMPVNNRYDIAELMAACRYYFKVT-GRRISFEYALIDGHNDSQAAAEELA 281
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L+G +N+IP N +Y SD+K + F + ++ G ++ +R G DI AACG
Sbjct: 282 ALLRGFTCHVNIIPVNKIKERDY-RSDRKAAMRFQKRLEALGLNATVRRTLGADIDAACG 340
Query: 364 QLKSLSK 370
QL+ +
Sbjct: 341 QLRREYE 347
>gi|296117650|ref|ZP_06836234.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM
20306]
gi|295969381|gb|EFG82622.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM
20306]
Length = 367
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 112/370 (30%), Positives = 179/370 (48%), Gaps = 29/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ E + L ++G+P + R Q+ K YV D M+DI + R + +
Sbjct: 22 KHFADYTEAERIKILDELGLP----KFRAKQLAKHYYVHHTVDVDEMTDIPESARKDIQE 77
Query: 67 HFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + T K L R +E+V + R TLC+SSQ GC
Sbjct: 78 KFFPPLMTQIRGFSTDDGETTKSLWRLH-----DGTLLESVLMRYPGRATLCISSQAGCG 132
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+A EI+ Q+ A + + G +++N+V M
Sbjct: 133 MACPFCATGQGGLDRNLSAAEIVEQLRNASKTM--------------EAEGGRLTNVVFM 178
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N+ V ++ +D G S R +T+ST G P + ++ +E LAISLH
Sbjct: 179 GMGEPLANYKRVVHAVKQFTDPDGFGMSMRNVTISTVGLAPAVRKLADEGLSCTLAISLH 238
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI- 303
++ RN LVP+N+++ ++ ++DA R+Y ++ R++ EY +++ ND A L
Sbjct: 239 TPDDEFRNELVPVNQRWDVDEILDAARYYVDKTSR-RVSIEYALIRDKNDQDFRADMLGQ 297
Query: 304 KILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
K+ K + +NLIP NP PG E+ S ++ F + G +R +G +I AA
Sbjct: 298 KLHKVLGSKVHVNLIPLNPTPGSEWDASPKERQEEFVRRVIAQGVPCTVRDTKGQEIAAA 357
Query: 362 CGQLKSLSKR 371
CGQL + ++
Sbjct: 358 CGQLAAEERQ 367
>gi|226366029|ref|YP_002783812.1| ribosomal RNA large subunit methyltransferase N [Rhodococcus opacus
B4]
gi|254807198|sp|C1B2V0|RLMN_RHOOB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|226244519|dbj|BAH54867.1| putative rRNA methyltransferase [Rhodococcus opacus B4]
Length = 369
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 179/372 (48%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + L + E EA+ ++G+P R Q+ + Y R D + M+D+ VR
Sbjct: 16 MPPKHLADLDSTERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVREQ 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ V G + L +E+V + R TLC+SSQ G
Sbjct: 72 VGAALFPTLLTAVKHLACDGGDTRKTL----WKANDGTLLESVLMRYPDRATLCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + L D ++SN+V
Sbjct: 128 CGMACPFCATGQGGLQRNLSTAEIVDQVRAAAAALRDGDVHGGPG---------RLSNVV 178
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V ++ GL S+R +T+ST G P I ++ +E V LA
Sbjct: 179 FMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEDLSVTLA 238
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND P A
Sbjct: 239 VSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQPWRAD 297
Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K L+ +NLIP NP PG E+ S + F + G S +R RG +
Sbjct: 298 MLGKKLRKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTRGQE 357
Query: 358 ILAACGQLKSLS 369
I AACGQL + +
Sbjct: 358 IAAACGQLAAEN 369
>gi|53712370|ref|YP_098362.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
fragilis YCH46]
gi|81383319|sp|Q64XE8|RLMN_BACFR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|52215235|dbj|BAD47828.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 344
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ +G+P QI W+Y + + M+++S + R L
Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVG
Sbjct: 57 LKGEYDLGISAPVDEMRSVDGTVKYLYQVS-----DNHFVEAVYIPDEDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q +LTA +IL Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPEW-------------------DKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331
Query: 364 QLKSLSK 370
L + +
Sbjct: 332 MLSTAKQ 338
>gi|309811464|ref|ZP_07705246.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185]
gi|308434515|gb|EFP58365.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185]
Length = 394
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 112/369 (30%), Positives = 172/369 (46%), Gaps = 17/369 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L + ++G+P R Q+ + R + D M+D+ + R +
Sbjct: 36 KHLADFDLAGRQALAKELGLPA----FRAKQLSNHYFERFVADPAEMTDLPKNGREEMVA 91
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ ++ G + + +E+V + R T+C+SSQ GC +
Sbjct: 92 QLMPTLLTSIKTLVADGGNTLKQVH----RLFDGALVESVIMRYPGRVTMCISSQAGCGM 147
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG + L RNLT EI+ QV+ LL G ++SN+V MG
Sbjct: 148 NCPFCATGQEGLTRNLTTAEIVEQVVAGARLLRS--GELPGLDDDERETPLRVSNVVFMG 205
Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGE L N+ ++ + GL S R +T+ST G VP I ++ E I V LA+SL
Sbjct: 206 MGEALANYRQAIDAIKRLVSPAPEGLGMSARGVTMSTVGLVPAIDKLAAEGIPVTLALSL 265
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LRN LVPIN ++ ++ +DA Y + RR++ EY ++K IND A L
Sbjct: 266 HAPDDELRNELVPINTRWSVDEALDAAHRYFEAT-GRRVSIEYALIKDINDQGWRADLLA 324
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L +N IP NP PG ++ S + F E ++ G + +R RG DI
Sbjct: 325 KKLNARGKGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAGGIPTTVRDTRGSDIDG 384
Query: 361 ACGQLKSLS 369
ACGQL + +
Sbjct: 385 ACGQLAAKT 393
>gi|301162076|emb|CBW21620.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 344
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ +G+P QI W+Y + + M+++S + R L
Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVG
Sbjct: 57 LKGEYDLGISAPVDEMRSVDGTVKYLYQVS-----DNHFVEAVYIPDEDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q +LTA +IL Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAAL-------------------PERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMEAMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331
Query: 364 QLKSLSK 370
L + +
Sbjct: 332 MLSTAKQ 338
>gi|148926804|ref|ZP_01810483.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145844529|gb|EDK21636.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 356
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 137/377 (36%), Positives = 202/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS++ +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSNLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S DG+ K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|213964408|ref|ZP_03392608.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46]
gi|213952601|gb|EEB63983.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46]
Length = 369
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 120/372 (32%), Positives = 179/372 (48%), Gaps = 29/372 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + EE + A+ ++G+P R QI + Y R D M+D+ + R
Sbjct: 20 MPATHFADLDVEERKAAVKELGLPA----FRADQIARHYYGRLEADPMTMTDLPEADRQK 75
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ V DG + L G +E+V + R TLC+SSQ G
Sbjct: 76 VKDSLFPPLLTPVRHITCDDGETRKTL----WRAGDGTLLESVLMKYPGRATLCISSQAG 131
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + + + G +++NIV
Sbjct: 132 CGMACPFCATGQGGLQRNLSTAEIVDQVREAAATMA--------------AEGGRLTNIV 177
Query: 184 MMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N++ V ++ G S R +T+ST GF PNI R+ +E V LA
Sbjct: 178 FMGMGEPLANYNRVLAAIHRITRPSPEGFGISMRNVTVSTVGFAPNIRRLADEDLSVTLA 237
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVPIN ++ + ++DA R+Y + RR++ EY +++ IND A
Sbjct: 238 VSLHTPDDELRDELVPINNRFTVAEVLDAARYYADKT-GRRVSIEYALIRDINDQDWRAD 296
Query: 301 NLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K L +NLIP NP PG ++ S +K F ++ G +R RG +
Sbjct: 297 LLGKKLHNALGSRVHVNLIPLNPTPGSKWDASPKKQQEEFVRRVQAQGVPCTVRDTRGNE 356
Query: 358 ILAACGQLKSLS 369
I AACGQL +
Sbjct: 357 IAAACGQLAAEE 368
>gi|303233443|ref|ZP_07320111.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4]
gi|302480451|gb|EFL43543.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4]
Length = 403
Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats.
Identities = 120/373 (32%), Positives = 189/373 (50%), Gaps = 27/373 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ +L + ++L L + +P R QI W++ I F M++IS+ +R L
Sbjct: 56 RTNLRRLSHDDLVYQLKLMHLPA----FRAKQIEDWLWHYNIGSFDDMTNISKALRAQLA 111
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + P +++++S DG+RK+LL + +E V +P + ++CVSSQ GC+
Sbjct: 112 KQFYLYAPRAINKQVSQDGSRKYLLLLE-----DGISVECVGMPNGDKLSVCVSSQAGCA 166
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL A+EI Q L R G +ISNIV+M
Sbjct: 167 MGCVFCATGKAGLRRNLFADEIYQQALFIRDDFD----------------GMRISNIVLM 210
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+ ++L + ++ +GL R +TLST G +PNIA+ +E LA+SLH
Sbjct: 211 GQGEPLTNYTQALRALRLFNNPLGLGIGARHLTLSTCGIIPNIAKFAQEEEQFTLAVSLH 270
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ R+ L+P +K+ L L + + Y + R ++EY ++KG+ND+P + L
Sbjct: 271 SAVQKTRDYLMPGVKKFSLVNLYNMMQTYVQKTKR-RPSYEYALIKGVNDTPEELQALCD 329
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+G +NLI N + + +K F + G + IR RG DI AACGQ
Sbjct: 330 FCRGTLCHVNLIQLNEIDDSPFKPTSEKRAQEFVRALNACGVEATIRVSRGQDIDAACGQ 389
Query: 365 LKSLSKRIPKVPR 377
L+ S + K R
Sbjct: 390 LQQRSCPLNKQKR 402
>gi|172040504|ref|YP_001800218.1| hypothetical protein cur_0824 [Corynebacterium urealyticum DSM
7109]
gi|171851808|emb|CAQ04784.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
7109]
Length = 370
Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 189/370 (51%), Gaps = 26/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E++EEA++++G+P + R Q++ Y R D M+D+ + R + +
Sbjct: 19 KHFADLTAEQVEEAVVELGLP----KFRAKQLYNQYYGRLEGDPLEMTDLPEASRQAVKE 74
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + D TRK L R +E+V + R TLC+SSQ GC
Sbjct: 75 KLFPALMTPLRKLDADDGETRKTLWRLH-----DGTLLESVLMRYPGRATLCISSQAGCG 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A + D ++SNIV M
Sbjct: 130 MACPFCATGQGGLDRNLSVGEIVEQVRNAARAMRDGEVAGIEG---------RLSNIVFM 180
Query: 186 GMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V +++ + G S+R +T+ST G P I ++ +E + V LA+S
Sbjct: 181 GMGEPLANYKRVVEAVRQITQPEPHGFGISQRNVTVSTVGLAPAIRKLADEDMSVRLAVS 240
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++ +E ++DA +Y S RR++ EY +++ IND P A L
Sbjct: 241 LHTPDDELRDTLVPVNNRWSVEEVLDAAAYYAEKS-GRRVSIEYALIRDINDQPWRADML 299
Query: 303 IK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K + K + +NLIP NP PG ++ S ++ F + + G +R +G +I
Sbjct: 300 GKKLHKALGSKVHVNLIPLNPTPGSKWDASPKERQDEFVQRVIAQGVPCTVRDTKGQEIA 359
Query: 360 AACGQLKSLS 369
AACGQL +
Sbjct: 360 AACGQLAAEE 369
>gi|60680539|ref|YP_210683.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
fragilis NCTC 9343]
gi|253563593|ref|ZP_04841050.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
3_2_5]
gi|81316392|sp|Q5LGK5|RLMN_BACFN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|60491973|emb|CAH06734.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
gi|251947369|gb|EES87651.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
3_2_5]
Length = 344
Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ +G+P QI W+Y + + M+++S + R L
Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVG
Sbjct: 57 LKGEYDLGISAPVDEMRSVDGTVKYLYQVS-----DNHFVEAVYIPDEDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q +LTA +IL Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAAL-------------------PERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331
Query: 364 QLKSLSK 370
L + +
Sbjct: 332 MLSTAKQ 338
>gi|171742890|ref|ZP_02918697.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
27678]
gi|171278504|gb|EDT46165.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
27678]
Length = 393
Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 187/375 (49%), Gaps = 28/375 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L M +E ++G+P R R Q+ Y D + SD R
Sbjct: 38 KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F V +++ + T K L R IE+V + +R TLC+SSQV
Sbjct: 94 AAEAFFPTLITEVTRQVADEGTTIKTLWRL-----FDGSLIESVLMRYPTRTTLCISSQV 148
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++A EI+ QV +A + D ++SNI
Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPG---------RLSNI 199
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A
Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F + + ++G ++ +R RG
Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 378
Query: 357 DILAACGQLKSLSKR 371
DI ACGQL + ++
Sbjct: 379 DIDGACGQLAAKERQ 393
>gi|31789482|gb|AAP58595.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 396
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 145/336 (43%), Positives = 201/336 (59%), Gaps = 22/336 (6%)
Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90
R +QI++WI+ R +GM+D+S+ +R L+ F++ P IV ++ S DGTRK +L
Sbjct: 62 PRFHATQIYRWIHRRAATSVEGMTDLSKALRTRLDHEFTLSTPRIVGDETSADGTRKLVL 121
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
R IE+V+IP+ T CVS+QVGC++ C FC TG LVR+LTA EI Q
Sbjct: 122 ELADRRR-----IESVFIPDTPAMTFCVSTQVGCAMACGFCLTGKMGLVRHLTAGEIAGQ 176
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
V + S G NIV+MGMGEPL N+DN K+L + GL
Sbjct: 177 VRVLASATGLLDQSF---------------NIVLMGMGEPLHNYDNTMKALRMLHAEAGL 221
Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
+ S RR+TLST G VP + R+ +E LA+SLHA +++ R LVP NRKYPL ++DA
Sbjct: 222 AVSPRRVTLSTVGIVPGLERLAKESLMPNLAVSLHATTDEQRTALVPPNRKYPLAAILDA 281
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
CR +P L RITFEYV+L+G+ND+P DA L+++L GI +K+NLIP NP PG +
Sbjct: 282 CRAFP-LKKRNRITFEYVLLEGVNDTPEDAKRLVRLLSGIKSKVNLIPLNPAPGIPFSRP 340
Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ F++ + R+ + +R RG DI AACGQL
Sbjct: 341 PDARVDRFADVLARAHLTVSVRKSRGRDIRAACGQL 376
>gi|297621155|ref|YP_003709292.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
gi|297376456|gb|ADI38286.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
Length = 362
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 144/381 (37%), Positives = 206/381 (54%), Gaps = 33/381 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ REE ++ G+P R +SQI +WIY +G+ D S++S + R L F
Sbjct: 5 FDLSREEWQKWAETNGLP----RFVSSQILQWIYEKGVVDPAQFSNLSLKARKFLASQFK 60
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
P I +S D + K+LLR E V +P +SR TLC+SSQVGC + C+
Sbjct: 61 WELPAIHSHLVSVDQSEKFLLRTSDH-----QLFEMVLMPYESRITLCISSQVGCRIGCT 115
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG L RNLT+ EIL Q+LLA + G+KI+NIV MGMGE
Sbjct: 116 FCQTGKLGLQRNLTSGEILSQILLANQSMN----------------GKKITNIVFMGMGE 159
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
PL N+D V K+ + D + S R+T+STSG VP I ++G+++ V LAISLH ++
Sbjct: 160 PLDNYDEVLKACRLMVDPKAIGLSMHRVTVSTSGLVPYIEKLGQDLPVRLAISLHQADDE 219
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
R+ ++P+NR+YPL L A + YP ITFEYVM++G ND DA L+K + G+
Sbjct: 220 KRSRMMPVNRRYPLSELKKALQQYPA-PKRYGITFEYVMIEGENDRIEDAKKLVKFVSGL 278
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
AK+NLIP N +PG E S + +F + +P+R RG DI CGQL + +
Sbjct: 279 KAKVNLIPINHFPGLEMKASAADRLKSFQSYLAERSIPAPVRYSRGQDISGGCGQLAAKT 338
Query: 370 K-------RIPKVPRQEMQIT 383
+ R+ + R++
Sbjct: 339 QEELNMDPRVLRRQRKQSAFA 359
>gi|323699795|ref|ZP_08111707.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. ND132]
gi|323459727|gb|EGB15592.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans ND132]
Length = 348
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 196/362 (54%), Gaps = 22/362 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+LI + + +LE + + + R R QIW+W++ + +RD + M+++S+ +R L
Sbjct: 3 NLIELNKTDLEAFVAE---DLKEPRYRAEQIWQWLWQKRVRDVEAMTNLSRPLREKLAGM 59
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+I++PEI S DGT K+LL+ IETV IP + R + C+S+QVGC++
Sbjct: 60 ANIVWPEIARVAESRDGTIKFLLKLV-----DGKLIETVLIPMQDRYSQCLSTQVGCAMA 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC TG RNLT EI+ Q+L+ R L D E + N+V MGM
Sbjct: 115 CTFCNTGKLGFERNLTYGEIMGQILVGRQYLADRNMNE-------------LKNLVFMGM 161
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N + + + L+ GLS S RR +ST GF + +G+ + AISLHA +
Sbjct: 162 GEPLLNLETLVRVLTDLPCERGLSLSWRRSMVSTVGFPDKLKILGDLEIALPAISLHAPT 221
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+LR ++P + L+ L+ A YP + RITFEY++LK +NDS A L K++
Sbjct: 222 QELRARIMPKAARVHLDDLMAALSAYP-MRPRERITFEYLLLKDVNDSMEHADQLAKLID 280
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
KINLI +N G Y D+ + F + + G ++ IR G DI AACGQLK+
Sbjct: 281 RRKGKINLIAYNATEGMPYGAPDRDRVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLKA 340
Query: 368 LS 369
S
Sbjct: 341 DS 342
>gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM
14977]
gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM
14977]
Length = 370
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 130/340 (38%), Positives = 183/340 (53%), Gaps = 21/340 (6%)
Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90
R QI W+Y +G R+F+ M+D+ + +R L Q + I +V S DG+ K+L
Sbjct: 50 KGYRKGQIASWLYKKGAREFEEMTDLPRRLREALEQDWRISEFALVQAFPSSDGSVKYLF 109
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
E VY+P R T+C+SSQVGC C+FC TG RNLT EIL Q
Sbjct: 110 TLH-----DGRRTEAVYLPYADRKTVCISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQ 164
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
+L G P R+I N+V+MGMGEPL N++N+ ++ D L
Sbjct: 165 ILAVAYHQGLGP--------------REIRNVVLMGMGEPLLNYENIAWAVRRMLDKNAL 210
Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
+ S RRITLST G I R+ E ++GV LA+SLHA ++ R ++P +Y + +++A
Sbjct: 211 AMSPRRITLSTVGIPGGIRRLAEGDLGVKLALSLHAPDDETRRRIIPTAHRYSIAEIMEA 270
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
R Y + R+T EY ML+ +ND A L +ILKG+ A +NLIPFNPW G S
Sbjct: 271 VRAYFDRTKR-RVTIEYTMLRDVNDREEQARELARILKGLVAHVNLIPFNPWEGAPVAGS 329
Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+K I F+ ++R G +R RG+D+ AACGQL
Sbjct: 330 GKKRIQRFAAVLEREGVPVTVRWSRGVDVGAACGQLALKE 369
>gi|307722066|ref|YP_003893206.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica
DSM 16294]
gi|306980159|gb|ADN10194.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica
DSM 16294]
Length = 364
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 134/374 (35%), Positives = 209/374 (55%), Gaps = 32/374 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+SL+ ++EL E + R QI+ W+Y + +DF M +I + ++ L+
Sbjct: 5 KQSLLDFTQKELTELVK--------PSFRAKQIYGWMYHQYAQDFDAMKNIPKAMKEELS 56
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC--------IGGPVEIETVYIPEKSRGTLC 117
Q + + +IV ++ S DGT K+L + E I ++++ T+C
Sbjct: 57 QKYIVNPLKIVRKEESSDGTIKYLFELQDGKTVEAVWLKMKDAQIDENGEIIQEAKYTIC 116
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VS+QVGC + CSFC T R+L+A EI+ QV+ + R
Sbjct: 117 VSTQVGCKVGCSFCLTAKGGFTRDLSAGEIVAQVVNLKRD-------------NAHKHNR 163
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236
KI NIV MGMGEPL N +N+ K++ I + GL+ S +R T+STSG I ++G ++G
Sbjct: 164 KI-NIVYMGMGEPLDNLENLAKAIEIFKEEEGLAISGKRQTVSTSGLSNKIDKLGKMDLG 222
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V +AISLHAV ++LR L+P+N+ + + +I+A + +P + +R+ FEY+++K ND
Sbjct: 223 VHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKNKNDDL 281
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+L GI AK+NLI FNP+PG Y ++D+V F E + G S IR +G+
Sbjct: 282 GSAKKLVKLLSGIKAKVNLIYFNPYPGTPYERPSREDMVKFQEYLINHGLLSTIRDSKGI 341
Query: 357 DILAACGQLKSLSK 370
DI AACGQLK ++
Sbjct: 342 DISAACGQLKEKNQ 355
>gi|323358368|ref|YP_004224764.1| Fe-S-cluster redox enzyme [Microbacterium testaceum StLB037]
gi|323274739|dbj|BAJ74884.1| predicted Fe-S-cluster redox enzyme [Microbacterium testaceum
StLB037]
Length = 442
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 178/372 (47%), Gaps = 18/372 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L M E E + ++G+P R Q+ K + D M+D+ R L
Sbjct: 70 VHLADMTAAERVEKVKELGLPG----FRAKQLEKHYFTHYTSDPAEMTDLPASGREELVA 125
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + T K+L + +E+V + R TLCVSSQ GC
Sbjct: 126 GMLPPLLTEVRRLETDRGDTIKFLWKLH-----DGALVESVLMRYPGRITLCVSSQAGCG 180
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIV 183
+ C FC TG L RN++A EI+ Q++ A +L+ G G + V ++SNIV
Sbjct: 181 MNCPFCATGQAGLTRNMSAAEIIEQIVRANALIAAGGLGGKTLRQAQGPGQVPERVSNIV 240
Query: 184 MMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
MGMGEPL N+ V +++ + D GL S R IT+ST G VP I ++ +E V A+
Sbjct: 241 FMGMGEPLANYARVMQAVRVMVDKDHGLGMSARGITVSTVGLVPAIKKLADEDIPVTFAL 300
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + LR+ L+P+N ++ ++ +DA R Y + RR++ EY ++K +ND A
Sbjct: 301 SLHAPDDGLRDELIPVNSRWKVDEALDAARAYFDKT-GRRVSIEYALIKDMNDHAWRADL 359
Query: 302 LIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L L +N IP NP PG + S+ F + +G + +R RG +I
Sbjct: 360 LADKLNARGRGWVHVNPIPLNPTPGSIWTASEVPVQNEFVRRLNDAGIPTTLRDTRGKEI 419
Query: 359 LAACGQLKSLSK 370
ACGQL + +
Sbjct: 420 DGACGQLVATEE 431
>gi|238926270|ref|ZP_04658030.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531]
gi|238885950|gb|EEQ49588.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531]
Length = 346
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 128/363 (35%), Positives = 188/363 (51%), Gaps = 26/363 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ G + EL +AL GIP R R Q+ +W+Y RG F M ++ + +R L
Sbjct: 2 NIFGWTKTELADALRAEGIP----RFRADQVIRWMYQRGAVSFDIMDNLPKTLRVRLAAL 57
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FSI P+I S T K L F ETV + ++CVS+Q GC +
Sbjct: 58 FSIERPQIAARLTSTDGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + LVRNLT EI QV+ L G + IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTVGEIAAQVIGMADYLRQ--------------EGAHVDTIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
GEPL N+DNV +L + + S R ITLSTSG VP I R+ EE + + L+ISLHA
Sbjct: 159 SGEPLENYDNVIGALRLLHADDTIGLSYRGITLSTSGIVPGILRLSEEGMPISLSISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR+ L+P+NR YP+ ++ A + Y + R+T+EY++++ +ND R+A L ++
Sbjct: 219 PTEELRSSLMPVNRMYPMADVLRAAQTYAARTKR-RVTYEYILIRDVNDGIREAEQLAEL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G A +NLIP NP L + + F ++ ++ +R G DI AACGQL
Sbjct: 278 LRGQLASVNLIPINPVVERNLLRPSKGTVRRFQRVLEERHITATVRREMGTDIQAACGQL 337
Query: 366 KSL 368
+S
Sbjct: 338 RSR 340
>gi|218261353|ref|ZP_03476207.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii
DSM 18315]
gi|218224074|gb|EEC96724.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii
DSM 18315]
Length = 343
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 187/372 (50%), Gaps = 29/372 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K L+GM EEL+ + G+P QI W+Y + + M++I+ R
Sbjct: 1 MSEKRRLLGMTLEELKGVASEAGLPG----YAAKQIADWLYKKKVTSIAAMTNIAAAKRT 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL + F + D S DGT K+L G +E+VYIP + R TLCVSSQV
Sbjct: 57 LLEESFEVGAVPPSDLMKSVDGTIKYLYP-----AGPGNFVESVYIPTEDRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q +NL+A EIL Q+ +++NI
Sbjct: 112 GCKMNCLFCMTGKQGFTKNLSANEILNQI-------------------QSLPETEELTNI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+S
Sbjct: 153 VFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVAKGLKRFLEESECHLAVS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ R L+P+ + +P +I+ + Y ++ RRI+FEY++ K +ND + A L
Sbjct: 213 LHSPYPGERLSLMPVEKAFPARDIIETIKQY-DFTHQRRISFEYIVFKNLNDDLQHAKAL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +L +P ++NLI F+ P SD + F + + +G IR RG DI AAC
Sbjct: 272 VCLLDKVPCRVNLIRFHAIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAAC 331
Query: 363 GQLKSLSKRIPK 374
G L + K+ +
Sbjct: 332 GMLSTAKKQQKE 343
>gi|260887299|ref|ZP_05898562.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
gi|330838947|ref|YP_004413527.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
gi|260862935|gb|EEX77435.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
gi|329746711|gb|AEC00068.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
Length = 350
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 120/365 (32%), Positives = 196/365 (53%), Gaps = 26/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+++ GM E ++E + R + R Q+ +W+Y + + F M+++ + +R L
Sbjct: 2 KNIFGMTLEAMQEDFAAL----RLEKYRARQVAEWLYKKCAKRFSDMTNLPKSLRTELET 57
Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++I P + + T K+LL F +E V + + ++C+S+Q GC+
Sbjct: 58 RYTIDTPLLRTRLDAADGRTSKFLLAFS-----DGAAVEAVLMRQPYGNSICISTQAGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC + L R+LTA E+L +VL +L S G K+ +V+M
Sbjct: 113 MGCSFCASTLHGLARDLTAGEMLAEVLFIEEML--------------KSQGGKVDTMVLM 158
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G GEPL N++NV L + + L+ S R ITLSTSG VP I R+ EE + + L+ISLH
Sbjct: 159 GSGEPLMNYENVVNFLRLLHEEYVLNISYRSITLSTSGIVPAIDRLAEEGMPLTLSISLH 218
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++R+ L+PINRKYPL ++ A + Y + RR+T+EY++++ +ND R+A L +
Sbjct: 219 APREEIRSELMPINRKYPLSDVVAAGKRYAEKT-GRRVTYEYILIRDVNDGEREAQELAE 277
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L G A +NLIP NP + ++ F + R ++ +R G DI AACGQ
Sbjct: 278 LLAGQLASVNLIPINPVKERGFERPSEERTAAFCRALTRRHITATVRREMGADIQAACGQ 337
Query: 365 LKSLS 369
L++
Sbjct: 338 LRNRH 342
>gi|160903334|ref|YP_001568915.1| radical SAM protein [Petrotoga mobilis SJ95]
gi|205829799|sp|A9BIC0|RLMN_PETMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|160360978|gb|ABX32592.1| radical SAM enzyme, Cfr family [Petrotoga mobilis SJ95]
Length = 347
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 129/371 (34%), Positives = 204/371 (54%), Gaps = 31/371 (8%)
Query: 4 LKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++ ++++ +L+ LL ++G+ + RT QI WIY + + DF+ M+++S++ R
Sbjct: 1 MQTKNILDFEYSDLQSYLLNELGLE----KFRTDQICDWIYKKRVFDFESMTNLSKDDRQ 56
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L+ +F I P IV +++S DGT K+LL + +E V I SR C+S+Q
Sbjct: 57 KLSDNFKISIPHIVKKEVSKIDGTTKYLLELEDKN-----TVEAVIIYYPSRTIACISTQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC L CSFC TG VRNL+ EI+ Q+L + N
Sbjct: 112 VGCPLKCSFCSTGQSGYVRNLSTGEIIGQLLAMEK-----------------DKEMDVKN 154
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
+V MGMGEPL NF+NV +++ I + R IT+ST+G I VG+ L+
Sbjct: 155 VVYMGMGEPLLNFNNVVQTIEILNHPKMKKLGARHITISTAGIPQKIEEVGDLNKEFRLS 214
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +N R+ ++PIN KYP+E +I +CR Y + R+TFEY+++KG NDS DAL
Sbjct: 215 VSLHAPTNLQRDQIMPINHKYPVEQVIQSCRIYQKKTKK-RVTFEYILIKGFNDSKEDAL 273
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+++ + +NLIP N P + ++ I F + + ++G + +R +G DI A
Sbjct: 274 KLVELFGDLKVMVNLIPVNENP-AGFEKPSKRFIQAFLDTLVKNGIDAVVRAEKGSDISA 332
Query: 361 ACGQLKSLSKR 371
ACGQL++ +
Sbjct: 333 ACGQLRTRELK 343
>gi|319901401|ref|YP_004161129.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P
36-108]
gi|319416432|gb|ADV43543.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P
36-108]
Length = 346
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 131/373 (35%), Positives = 194/373 (52%), Gaps = 29/373 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ L+G+ EL+ + +G+P QI W+Y + + MS++S R L
Sbjct: 1 MQKQPLLGLTLSELQNVVKNLGMPG----FAAKQIASWLYDKKVLSIDEMSNLSLRHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + + VD S DGT K+L R G +E VYIP+ R TLCVSSQVG
Sbjct: 57 LKELYEVGAEIPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDDDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------SSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L + + S G S+S +RITLS+ G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALEVMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ +INLI F+ P + +D + + + + G + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPEVDLEGADMETMTALRDYLTAHGLFTTIRSSRGEDIFAACG 331
Query: 364 QLKSLSKRIPKVP 376
L + + K
Sbjct: 332 MLSTAKQEDDKQE 344
>gi|254457165|ref|ZP_05070593.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1]
gi|207085957|gb|EDZ63241.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1]
Length = 359
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 130/374 (34%), Positives = 210/374 (56%), Gaps = 32/374 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL+ ++EL+ + R +QI+ W+Y + F M ++ + +R L
Sbjct: 5 KPSLLDFTKKELQTLIK--------PGFRVNQIFGWLYHQYAESFDDMKNVPKALREELA 56
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPAR--------CIGGPVEIETVYIPEKSRGTLC 117
+ + + IV++++S DGT K+LL+ + E + ++++ T+C
Sbjct: 57 EKYVVNPLTIVNKEVSTDGTIKYLLQMQDGKTMEAVWLKMKDTQLDENAEVIQEAKYTIC 116
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VS+QVGC + CSFC T R+LTA EI+ QV+ +
Sbjct: 117 VSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVVTLK--------------CDNDHKHN 162
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236
+ NIV MGMGEPL N DN+ K++ I + GL S +R T+STSG I ++G ++G
Sbjct: 163 RKINIVYMGMGEPLDNLDNLAKAIEIFKEDDGLCISGKRQTVSTSGLSNKIDQLGKMDLG 222
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V +AISLHAV ++LR L+P+N+ + + +I+A + +P + +R+ FEY+++KG ND
Sbjct: 223 VHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKGKNDDL 281
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+L GI AK+NLI FNP+PG +Y ++D+VTF++ + + G IR +G+
Sbjct: 282 GSAKKLVKLLHGIKAKVNLIYFNPYPGTDYDRPSKEDMVTFADYLIKHGLLCTIRDSKGI 341
Query: 357 DILAACGQLKSLSK 370
DI AACGQLK ++
Sbjct: 342 DISAACGQLKEKTE 355
>gi|296129336|ref|YP_003636586.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109]
gi|296021151|gb|ADG74387.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109]
Length = 375
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 118/371 (31%), Positives = 173/371 (46%), Gaps = 26/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + EE A+ +G R Q+ + D M+D+ + R L
Sbjct: 23 RHFVDLTPEERVAAVTALG----EKPFRAKQLATHYFTHLTSDADAMTDLPKASRDTLVA 78
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ T K L ++E+V + +R TLCVSSQ GC
Sbjct: 79 DLFPELLTTSRTLTADHGTTVKTLYHL-----FDGAKVESVLMRYANRTTLCVSSQAGCG 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG L+RNL+ EI+ QV A L D +P ++SN+V M
Sbjct: 134 LACSFCATGKMGLLRNLSTAEIVEQVRQAARALAD---------GDVPGGPTRLSNVVFM 184
Query: 186 GMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ A GL S R +T+ST G VP + R+ E I V LA+S
Sbjct: 185 GMGEPLANYKAVMATVRRLVAPAPDGLGMSARNVTVSTVGLVPAMDRLAGEGIPVTLALS 244
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVP+N ++ ++ +D+ R Y ++ RR++ EY +++ +ND A L
Sbjct: 245 LHAPDDELRSELVPVNTRWSVDEALDSARRYFDVT-GRRVSIEYALIRDVNDHAWRADLL 303
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L N IP NP PG + SD + F ++ G + IR RG DI
Sbjct: 304 GEKLVARGTGWVHCNPIPLNPTPGSRWTASDPQVEAEFVARLRAHGVPTTIRDTRGSDID 363
Query: 360 AACGQLKSLSK 370
ACGQL +
Sbjct: 364 GACGQLAAEED 374
>gi|251799946|ref|YP_003014677.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
gi|247547572|gb|ACT04591.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
Length = 356
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 129/376 (34%), Positives = 203/376 (53%), Gaps = 27/376 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ S+ G ++L L + G H + R +Q+W+++Y + + F M+D+ + L
Sbjct: 1 MSTASIYGFTLDQLTAWLGERG----HKKFRATQVWEYLYRKRVTSFADMTDVHPDCVKL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++++I +++S DGT K LL+ IETV + K ++CV++QVG
Sbjct: 57 LEENYAIQTLVEHTKQVSKDGTVKLLLKL-----DDGNLIETVMMRHKFGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ CSFC +G K R+LT+ EI+ Q++ + L + G K+S+IV
Sbjct: 112 CNIGCSFCASGLLKKSRDLTSGEIVEQIMKIQLHLDE------------SGQGEKVSHIV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP NF ++ L+ D GL+ R IT+STSG I + + GV LA+S
Sbjct: 160 VMGIGEPFDNFIHLNDFLTTVKDHKGLAIGPRHITVSTSGLADKIREFADKDQGVNLAVS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ INR P+E L+DA +Y +N RIT EY++LK +ND P AL L
Sbjct: 220 LHAPNNELRTRIMKINRAIPIEKLMDAIDYYLERTNR-RITLEYILLKDVNDQPEHALEL 278
Query: 303 IKILKGIP---AKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
+++ +NLIP+NP +Y S+ I F + +K+ S +R G DI
Sbjct: 279 AELVGDRRRSLVNVNLIPYNPVDEHSQYQRSENDSIKGFYDTLKKQDVSVSVRLEHGADI 338
Query: 359 LAACGQLKSLSKRIPK 374
AACGQL+S K
Sbjct: 339 DAACGQLRSKQMNKEK 354
>gi|295106390|emb|CBL03933.1| 23S rRNA m(2)A-2503 methyltransferase [Gordonibacter pamelaeae
7-10-1-b]
Length = 349
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 113/365 (30%), Positives = 183/365 (50%), Gaps = 27/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + L++ + +G P R Q+++W+Y+ + + M+++ Q +R L+
Sbjct: 9 KPIKTYSLNNLKQLMKDLGQP----SFRAKQLYEWLYLHHVGSYDEMTNLPQTLRVQLSA 64
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + P ++D + S DGT K+++ + V I + R T+C S+Q GC++
Sbjct: 65 DYPLFTPAVIDSQTSQDGTAKYVISYHDGARVETVAIPS----SDGRLTVCCSTQAGCAM 120
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG + RNL+A EI+ Q+L+A++ +G+ ++SN+V+MG
Sbjct: 121 GCTFCATGKEGFTRNLSAGEIVDQILIAQTRMGE-----------------RVSNVVVMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP N++ +L I +D L+ R ITLST G + I R+G E LA+SLHA
Sbjct: 164 QGEPFLNYEQTLNALHILNDEKLLNIGARHITLSTCGILSGIDRLGTEPEQFTLAVSLHA 223
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R+ ++P Y L L Y +N R T EY M+ +ND+ D LI+
Sbjct: 224 AIQRTRDKIMPGVANYGLGKLKTVLLKYIERTNR-RATLEYAMMNRVNDNEEDLKALIEF 282
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
G+ +NLIP N E+ S + + + RSG + IR RG DI ACGQL
Sbjct: 283 CTGLLCHVNLIPLNEIEESEFSPSKAPTMNHWYLTLNRSGIETTIRHSRGSDIAGACGQL 342
Query: 366 KSLSK 370
K+ K
Sbjct: 343 KNAVK 347
>gi|150005131|ref|YP_001299875.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
vulgatus ATCC 8482]
gi|254883266|ref|ZP_05255976.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|294778942|ref|ZP_06744358.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510]
gi|319642641|ref|ZP_07997287.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A]
gi|205829665|sp|A6L3I9|RLMN_BACV8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|149933555|gb|ABR40253.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|254836059|gb|EET16368.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|294447251|gb|EFG15835.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510]
gi|317385729|gb|EFV66662.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A]
Length = 349
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 29/369 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L
Sbjct: 5 KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHREALK 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC
Sbjct: 61 EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NL+A +IL Q+ K++N+V M
Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H
Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K+
Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GI ++NLI F+ P + D + +V F + + + G + IR RG DI AACG L
Sbjct: 276 LRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGML 335
Query: 366 KSLSKRIPK 374
+ ++ K
Sbjct: 336 STAKQQKEK 344
>gi|255007877|ref|ZP_05280003.1| hypothetical protein Bfra3_01983 [Bacteroides fragilis 3_1_12]
gi|313145585|ref|ZP_07807778.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134352|gb|EFR51712.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 344
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 132/367 (35%), Positives = 195/367 (53%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ +G+P QI W+Y + + M+++S + R L
Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVG
Sbjct: 57 LKGEYDLGVVAPVDAMHSIDGTVKYLYRV-----GENHFVEAVYIPDEDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q +LTA +IL Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAAL-------------------PERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELV 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + +D + ++ F + + G + IR RG DI AACG
Sbjct: 272 KLLRGLDCRMNLIRFHAIPGVDLEGADMETMMAFRDYLTSHGLFTTIRASRGEDIFAACG 331
Query: 364 QLKSLSK 370
L + +
Sbjct: 332 MLSTAKQ 338
>gi|229495911|ref|ZP_04389637.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC
35406]
gi|229317224|gb|EEN83131.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC
35406]
Length = 339
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 129/364 (35%), Positives = 191/364 (52%), Gaps = 28/364 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+GM+ EEL L IG+P + Q+ WIY + + F M++IS R LL +
Sbjct: 2 ITLLGMLPEELTGLALSIGMP----KFAGRQLADWIYNKRVTSFDEMTNISLRHRALLQE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+I V S DGTRK+L +E+V+IPE R TLCVSSQ+GC +
Sbjct: 58 KATIGRKAPVARADSKDGTRKFLFAVGDGA----QYVESVFIPEGDRATLCVSSQIGCKM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG Q NLT+ EI+ Q+L K++NIV MG
Sbjct: 114 DCLFCMTGKQGFKGNLTSAEIVNQILSIPDS-------------------DKLTNIVYMG 154
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N + V KS++ + GL+ S +RITLS+ G P +++ E+ LAISLH
Sbjct: 155 MGEPLDNVEAVLKSIACFTHPSGLAMSPKRITLSSIGLEPGLSKFLEQCSCHLAISLHNA 214
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ R ++PI R P+E I+ + Y S RR+TFEY++ G+ND A L++++
Sbjct: 215 LPEERLSMMPIERAMPIEKTIETLKRY-NFSGQRRLTFEYIVFGGLNDDIAHAKALLRLI 273
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ + INLI ++ P S ++ + F++ + +G + IR RG DI AACG L
Sbjct: 274 RPLECHINLIRYHRIPNVALPSSQEERMQRFADYLNGAGVPTTIRASRGEDIAAACGMLS 333
Query: 367 SLSK 370
+ +
Sbjct: 334 AQHQ 337
>gi|330996801|ref|ZP_08320673.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
11841]
gi|329572523|gb|EGG54174.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
11841]
Length = 348
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 129/377 (34%), Positives = 198/377 (52%), Gaps = 29/377 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K +L+GM EL+ +IG+P Q+ +W+Y + + M++IS + R
Sbjct: 1 MEDKIALLGMTLSELKSVAGEIGMP----SFAARQMAEWLYGKKVASIDEMTNISAKNRC 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LLN+ +++ VD + S DGT K+L R A +ETVYIP+ R TLCVSSQV
Sbjct: 57 LLNERYTVGCLGPVDCQRSADGTVKYLYRTAAGGY-----VETVYIPDGDRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q LTA +IL Q+ ++N+
Sbjct: 112 GCRMNCRFCMTGKQGFSGQLTAADILNQLYSL-------------------PERDTLTNV 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MG GEPL N DNV ++ I + G ++S +RIT+ST G + R +E LA+S
Sbjct: 153 VFMGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH D R L+P Y L+ ++ R Y ++ RR++FEY M +G+ND+ A L
Sbjct: 213 LHNPFADQRARLMPAENSYGLQEIVALLREY-DFTHQRRLSFEYTMFEGVNDTLAHAKEL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++L G+ ++NLI F+P PG + + ++ ++ F + + G S IR RG DI AAC
Sbjct: 272 LRLLGGVECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAAC 331
Query: 363 GQLKSLSKRIPKVPRQE 379
G L + ++ ++ + E
Sbjct: 332 GLLSTAKQQGVELKKTE 348
>gi|301167934|emb|CBW27519.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 356
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 133/372 (35%), Positives = 203/372 (54%), Gaps = 22/372 (5%)
Query: 4 LKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ K+ SL + EEL E L + G + Q++ WI+ R DF S++S +++
Sbjct: 1 MAKKEVSLYSLTLEELREYLKEQGF----AKFAADQVYNWIFKRYEFDFDKWSNVSGKIK 56
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
++ P++V +S DGTRK+L+ V I + +R TLCVSSQ
Sbjct: 57 KHFEENLDTFLPKVVWNGLSKDGTRKFLIGMNDSNTVEAVAIPA----KNNRLTLCVSSQ 112
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
+GC++ C+FC+TGT L R+LT E++ Q L L + +++N
Sbjct: 113 IGCAIGCTFCHTGTMGLTRHLTTGEVVGQYLAVTKWLRE-----------NVDEEARLTN 161
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
IV MG GEPL NF+NVK++ + + G+ +R+ITLSTSG VP I ++ + V +AI
Sbjct: 162 IVYMGQGEPLHNFNNVKQATKVFMEEKGIGLGQRKITLSTSGLVPQIEKLQDFPPVNVAI 221
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA N++R L+PIN+ Y L L +A R P ++ IT+EY+++ +ND D
Sbjct: 222 SLHAAHNNIRTELMPINKAYDLTRLFEAIRKIPLKAHRW-ITYEYILIADLNDRVEDLDG 280
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L +K+NLIPFN +P ++ + I F + + R GY RT +G DILAA
Sbjct: 281 LSDLLDKKVSKVNLIPFNEYPESKFKRPSDEKIKWFQDELNRRGYICTTRTTKGTDILAA 340
Query: 362 CGQLKSLSKRIP 373
CGQLKS ++
Sbjct: 341 CGQLKSEHDKLN 352
>gi|237727504|ref|ZP_04557985.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
D4]
gi|229434360|gb|EEO44437.1| ribosomal RNA large subunit methyltransferase N [Bacteroides dorei
5_1_36/D4]
Length = 349
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 29/369 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L
Sbjct: 5 KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETLK 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC
Sbjct: 61 EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NL+A +IL Q+ K++N+V M
Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H
Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K+
Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GI ++NLI F+ P + D + +V F + + + G + IR RG DI AACG L
Sbjct: 276 LRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGML 335
Query: 366 KSLSKRIPK 374
+ ++ K
Sbjct: 336 STAKQQKEK 344
>gi|303237669|ref|ZP_07324229.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN]
gi|302482121|gb|EFL45156.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN]
Length = 346
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 121/369 (32%), Positives = 191/369 (51%), Gaps = 29/369 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+GM EL+ ++G+P Q+ KW+Y + + M++IS++ R L
Sbjct: 5 KKPLVGMNLLELKNVAKELGMPA----FTGGQMAKWLYTQHVTSIDEMTNISKDNREKLK 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++++I + +D + S DGT K+L +E+VYIP+++R TLCVSSQVGC
Sbjct: 61 ENYTIGCKKHIDAQYSKDGTIKYLFPT-----DNGKFVESVYIPDENRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLT +IL Q+ K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTTADILNQIYSL-------------------PEREKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
G GEP+ N+DNV K+ + + ++S +RIT+S+ G + R EE +AIS+H
Sbjct: 157 GQGEPMDNYDNVLKTTQLLTADYAYAWSPKRITVSSIGIKSKLKRFLEESDCHVAISMHN 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ R ++P + + +++ R+Y S+ RR++FEY++ KG NDS A +IK+
Sbjct: 217 PIPEERIEVMPSEKAMSITEIVEMLRNY-DFSHQRRLSFEYIVFKGKNDSVDHAKAIIKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G+ + NLI F+ P D K + F + G + IR RG DI AACG L
Sbjct: 276 VEGLECRFNLIRFHTIPNVPLQGVDDKKMEEFRNYLTAHGVFTTIRASRGQDIFAACGLL 335
Query: 366 KSLSKRIPK 374
+ K K
Sbjct: 336 STAKKNANK 344
>gi|302345666|ref|YP_003814019.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC
25845]
gi|302149773|gb|ADK96035.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC
25845]
Length = 350
Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 192/372 (51%), Gaps = 29/372 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+GM EL+E +G+P QI KW+Y + ++ M++IS+ R L
Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++I E +D + S DGT K+L +ETVYIP++ R TLCVSSQVGC
Sbjct: 61 AEYAIGCKEPIDAQHSKDGTIKYLFPT-----DSGKFVETVYIPDEDRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q +L+A +IL Q+ K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIYSL-------------------PERDKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
G GEP+ N DNV ++ I + G +S +RIT+S+ G + R +E +AIS+H
Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R+ L+P + ++ +I+ +Y S+ RR++FEY++ K NDS A ++++
Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNY-DFSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ ++NLI F+P P D + F + + G + IR RG DI AACG L
Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335
Query: 366 KSLSKRIPKVPR 377
+ K + R
Sbjct: 336 STAKKIEEERGR 347
>gi|283456084|ref|YP_003360648.1| radical SAM family enzyme [Bifidobacterium dentium Bd1]
gi|283102718|gb|ADB09824.1| Radical SAM family enzyme [Bifidobacterium dentium Bd1]
Length = 389
Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats.
Identities = 125/375 (33%), Positives = 187/375 (49%), Gaps = 28/375 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L M +E ++G+P R R Q+ Y D + SD R
Sbjct: 34 KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 89
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F V +++ + T K L R IE+V + +R TLC+SSQV
Sbjct: 90 AAEAFFPTLITEVTRQVADEGTTIKTLWRL-----FDGSLIESVLMRYPTRTTLCISSQV 144
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++A EI+ QV +A + D ++SNI
Sbjct: 145 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPG---------RLSNI 195
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 196 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFVISARNITVSTVGVVPGIKKLTAEGIPVRL 255
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A
Sbjct: 256 AVSLHAPSDELRDELVPMNKRFDTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 314
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F + + ++G ++ +R RG
Sbjct: 315 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 374
Query: 357 DILAACGQLKSLSKR 371
DI ACGQL + ++
Sbjct: 375 DIDGACGQLAAKERQ 389
>gi|86607188|ref|YP_475951.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
JA-3-3Ab]
gi|123751756|sp|Q2JRQ8|RLMN_SYNJA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|86555730|gb|ABD00688.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-3-3Ab]
Length = 356
Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats.
Identities = 129/370 (34%), Positives = 186/370 (50%), Gaps = 36/370 (9%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G L++ ++ G P R Q+ W+Y +GIR Q ++ + R L + +
Sbjct: 8 LLGQSLAALKDWAVEQGQPA----YRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE-Y 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ ++V S DGT K+LL+ IETV IP R T+CVSSQVGC + C
Sbjct: 63 PVGRSQVVQRIESRDGTVKFLLQL-----ADGELIETVGIPTARRLTVCVSSQVGCPMAC 117
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+FC TG RNL EIL QVL + GR++S++V MGMG
Sbjct: 118 NFCATGKMGYRRNLKLHEILDQVLTVQEDF-----------------GRRVSHVVFMGMG 160
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
EPL N D V +++ + +G+ +R ITLST G I + + ++ + LA+SLHA +
Sbjct: 161 EPLLNRDTVVQAIRSLNQDIGIG--QRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAPN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+LR L+P YPL+ LI CR Y L + RRI+FEY +L G+ND P A L +L+
Sbjct: 219 QELRQQLIPSAAHYPLDALIQDCRDYM-LCSGRRISFEYTLLAGVNDLPIHARQLAHLLR 277
Query: 308 GI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+NLIP+NP +Y + F ++ +R RGLD AAC
Sbjct: 278 QASQAGARLHVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAAC 337
Query: 363 GQLKSLSKRI 372
GQL+ R
Sbjct: 338 GQLRGSFLRA 347
>gi|237711138|ref|ZP_04541619.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265750725|ref|ZP_06086788.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA]
gi|229454982|gb|EEO60703.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263237621|gb|EEZ23071.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA]
Length = 349
Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats.
Identities = 127/369 (34%), Positives = 192/369 (52%), Gaps = 29/369 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L
Sbjct: 5 KTALLGRTLDEIQQIVRNLGMP----KFAAKQIASWLYDKKVETIDEMTNLSLKHREALK 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + V+E S DGT K+L R P R IE VYIP++ R TLCVSSQVGC
Sbjct: 61 EGYEVGASAPVEEMRSVDGTVKYLFRTPTRNF-----IEAVYIPDEDRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLTA +IL Q+ K++N+V M
Sbjct: 116 MNCKFCMTGKQGFTANLTANQILNQIYSI-------------------PEREKLTNLVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H
Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K+
Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GI ++NLI F+ P + D + + TF + + + G + IR RG DI AACG L
Sbjct: 276 LRGIECRVNLIRFHAIPDVDLEGVDMEAMTTFRDYLTQHGVFATIRASRGEDIFAACGML 335
Query: 366 KSLSKRIPK 374
+ ++ K
Sbjct: 336 STAKQQKEK 344
>gi|169630257|ref|YP_001703906.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
abscessus ATCC 19977]
gi|169242224|emb|CAM63252.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length = 373
Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats.
Identities = 125/374 (33%), Positives = 186/374 (49%), Gaps = 26/374 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L M E+ + + ++G+P R QI Y R + D M+D+ R
Sbjct: 19 MPPRHLADMSLEQSRDVVTELGLPA----FRAKQIANQYYGRLVGDPATMTDLPAGARGG 74
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + E + + TRK L R +E+V + R TLC+SSQ
Sbjct: 75 VAEALFPRLLEPLRQIACDAGDTRKTLWRLH-----DGSTVESVLMRYPDRNTLCISSQA 129
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+A EIL QV A + L D +P ++SNI
Sbjct: 130 GCGMACPFCATGQGGLTRNLSAAEILEQVRDAAASLRD---------GQLPGGPGRLSNI 180
Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N++ V L G S+R +T+ST G P I R+ +E GV L
Sbjct: 181 VFMGMGEPLANYNRVLTVLRKITAPPPEGFGISQRGVTVSTVGLAPAIRRLADEGLGVTL 240
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ + ++DA R+Y ++ RR++ EY +++ +ND P A
Sbjct: 241 AVSLHCPDDELRDTLVPVNTRWAISEVLDAARYYADVT-GRRVSIEYALIRDVNDQPWRA 299
Query: 300 LNLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L+ +NLIP NP PG ++ S + F ++ G S +R RG
Sbjct: 300 DMLGKKLRKALGQMVHVNLIPLNPTPGSQWDASPKPVEREFVRRVREQGVSCTVRDTRGR 359
Query: 357 DILAACGQLKSLSK 370
+I AACGQL + +
Sbjct: 360 EIAAACGQLAASER 373
>gi|262066381|ref|ZP_06025993.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
33693]
gi|291379946|gb|EFE87464.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
33693]
Length = 358
Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats.
Identities = 129/378 (34%), Positives = 203/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + IR+F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L ++ I + ++ ++S D T K+L + G +E + + R T
Sbjct: 56 REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDK---GTIETVLLRHRDSKNKEIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL QV L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG VP I + + E+
Sbjct: 159 DESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGVVPGIEKILLEK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SEVDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSMKKIERFYNYLKNVRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|296139393|ref|YP_003646636.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM
20162]
gi|296027527|gb|ADG78297.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM
20162]
Length = 371
Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 184/370 (49%), Gaps = 26/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + +EL++A++ +G+P + R +Q+ + Y R D M+D+ R + +
Sbjct: 19 RHLADLTDDELQQAVVDLGLP----KFRANQLARHYYGRLEADAATMTDLPASARGTVGE 74
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + TRK L R +E+V + R TLC+SSQ GC
Sbjct: 75 ALLPELMSPIRHIATDSGTTRKTLWRLH-----DGTLLESVLMRYTDRATLCISSQAGCG 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A + D ++SN+V M
Sbjct: 130 MACPFCATGQGGLDRNLSTAEIVDQVRSAAKAMQDGDVAGGPG---------RLSNVVFM 180
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V +++ GL S+R +T+ST G P I ++ +E V LA+S
Sbjct: 181 GMGEPLANYKRVVQAVRRITSPAPEGLGISQRHVTVSTVGLAPAIRKLADEGLSVTLAVS 240
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++ + ++DA R+Y + RR++ EY +++ +ND P A L
Sbjct: 241 LHTPDDELRDTLVPVNNRWSVAEVLDAARYYADQT-GRRVSIEYALIRDVNDQPWRADML 299
Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L+ A +NLIP NP PG E+ S + F + G S +R RG +I
Sbjct: 300 GEKLRTKLGQFAHVNLIPLNPTPGSEWDASPKDRQDEFVRRVIAQGVSCTVRDTRGQEIA 359
Query: 360 AACGQLKSLS 369
AACGQL +
Sbjct: 360 AACGQLAAEE 369
>gi|322380339|ref|ZP_08054550.1| Fe-S cluster redox enzyme [Helicobacter suis HS5]
gi|321147246|gb|EFX41935.1| Fe-S cluster redox enzyme [Helicobacter suis HS5]
Length = 383
Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats.
Identities = 127/373 (34%), Positives = 196/373 (52%), Gaps = 28/373 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SL + EEL+ QI+ W+Y R F M ++ + ++ L +
Sbjct: 25 QSLYNLTFEELQTYAADH----HFKPFVAKQIFAWLYQRYATSFDQMHNLPKSLKTTLQR 80
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
F I +++ ++ S D + K L + V + I + + T C+
Sbjct: 81 DFCIQNLKLLVKECSQDKSEKCLFATHDQHSFESVFMVMKEKQIGDKGQILAQEKLTFCL 140
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQ+GC + C FC T VRNL A EI+ QV+ + + P
Sbjct: 141 SSQIGCKVGCVFCATAKGGFVRNLKAGEIVEQVVALKRMHSLEPTKGI------------ 188
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
N+V MGMGEPL NF+ V +SL I S GL+ S RRITLSTSG VP + + +GV
Sbjct: 189 --NLVFMGMGEPLHNFEQVVRSLKILSHPHGLNISPRRITLSTSGVVPMMDILGALNLGV 246
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLHAV+++LR+ L+PIN+ Y ++ LI A R +P + +R+ FEY+++K ND
Sbjct: 247 QLAISLHAVNDELRSKLMPINKTYNIQELIKAARRFP-IDARKRLMFEYLVIKDYNDGLE 305
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A L+++L G+ +KINLIP+NP ++ D + + F++ + + G +R +GLD
Sbjct: 306 HAKALLRLLNGLRSKINLIPYNPTTHSKFERPDLEKVKQFADFLNQRGLLCTMRLSKGLD 365
Query: 358 ILAACGQLKSLSK 370
I AACGQL+ ++
Sbjct: 366 ISAACGQLREKTR 378
>gi|227500112|ref|ZP_03930183.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098]
gi|227217827|gb|EEI83124.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098]
Length = 341
Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 197/370 (53%), Gaps = 31/370 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L +E+E +K G + R Q+++ I+V+ I DF M+D+S+E+R
Sbjct: 1 MTKT-LNDKSIKEIESIFIKEGY----QKFRAKQVYRQIHVKRINDFDKMTDLSKEMREK 55
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L ++++ +++ E +S D T+K+L IE V++ R T+C+SSQV
Sbjct: 56 LGENYAFPKMKLLKEFVSKLDSTKKYLFSL-----DDGNIIEAVFMDYDKRKTICISSQV 110
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + LVRNLTA E++ +V + G+ I+NI
Sbjct: 111 GCRMGCKFCASTKNGLVRNLTAGELIEEVYELERINGE------------------INNI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEPL N+DN+ K + + +++ G S R ITLSTSG P I ++ + V LA+
Sbjct: 153 VIMGIGEPLDNYDNIVKFIDLITNADGRDLSHRSITLSTSGLAPMIRKLADSKLDVNLAL 212
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH ++ R +P+ KY +E L++A +Y + R++FEYV++ G+N++ D N
Sbjct: 213 SLHYANDKKRQKFMPVANKYKIEDLLEATDYYLAKTKR-RVSFEYVVIDGVNNTDSDVDN 271
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +LK INLIP NP Y + F + + + ++ IR G DI A+
Sbjct: 272 LYSLLKNKNVHINLIPLNPIEEFAYNRPKSSALTEFRDKLVKRKLNATIRRSMGSDIDAS 331
Query: 362 CGQLKSLSKR 371
CGQL++ R
Sbjct: 332 CGQLRNNYAR 341
>gi|206601630|gb|EDZ38113.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'5-way CG']
Length = 379
Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats.
Identities = 145/362 (40%), Positives = 206/362 (56%), Gaps = 10/362 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+ E L G R QI +WI+ + +++ M+++ E R +
Sbjct: 4 KMPLLDHPVAEWPSLLS--GDKPV-PAYRARQIAQWIFRQNASEWERMNNLPGEDRRRWS 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + P + DEK S DGTRK+LL IE+V IP R TLCVSSQVGC
Sbjct: 61 EIWDLSLPIVRDEKRSRDGTRKFLLELS-----DGALIESVLIPRDDRATLCVSSQVGCG 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC T L+RNL+ EIL QV +A LL + P + + + +++++V M
Sbjct: 116 IGCRFCRTAEMGLIRNLSVSEILGQVRVANRLLAESPVRDMSKETEPAPLLSRVNHLVFM 175
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GMGEPL NFD++ +SL++ + G S RRIT+STSG I +G I V LA+SL
Sbjct: 176 GMGEPLANFDHLVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLS 235
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +LR L+PI+R +P+ ++ ACR YP L N +RITFEYV+L G+ND A L +
Sbjct: 236 APTEELRENLMPISRHHPIRSILSACRAYP-LRNRQRITFEYVLLGGVNDGEGQARELAR 294
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L +K+NLIPFNP+PG Y D+ + F E + G ++ +RT RG DIL ACGQ
Sbjct: 295 LLAPFRSKVNLIPFNPYPGSPYHRPDKDRVRRFQEILLAKGVTATLRTTRGEDILGACGQ 354
Query: 365 LK 366
L
Sbjct: 355 LA 356
>gi|327313758|ref|YP_004329195.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289]
gi|326945675|gb|AEA21560.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289]
Length = 357
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 127/380 (33%), Positives = 196/380 (51%), Gaps = 31/380 (8%)
Query: 2 NFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
++ K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+
Sbjct: 3 TSMETAKKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKA 58
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R L ++I E D + S DGT K+L +ETVYIPE R TLCVS
Sbjct: 59 NREKLAAAYAIGCKEPTDVQYSKDGTVKYLFPT-----DSGKFVETVYIPEDGRATLCVS 113
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + C FC TG Q +L+A +IL QV K+
Sbjct: 114 SQVGCKMNCLFCQTGKQGFEGSLSATDILNQVYSL-------------------PERDKL 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+NIV MG GEP+ N DNV + I + G +S +RIT+S+ G + R EE +
Sbjct: 155 TNIVFMGQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHV 214
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AIS+H+ ++ R+ L+P R +E ++D +Y S+ RR++FEY++ K +NDS A
Sbjct: 215 AISMHSPLHEQRSELMPAERGMSIESIVDLLGNY-DFSHQRRLSFEYIVFKDVNDSEAHA 273
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++LKG+ +INLI F+P P D + + F + + G + IR RG DI
Sbjct: 274 KAIVRLLKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIF 333
Query: 360 AACGQLKSLSKRIPKVPRQE 379
AACG L + ++ + + +
Sbjct: 334 AACGLLSTAKEKDGRKGKSK 353
>gi|325108721|ref|YP_004269789.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis
DSM 5305]
gi|324968989|gb|ADY59767.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis
DSM 5305]
Length = 358
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 129/383 (33%), Positives = 201/383 (52%), Gaps = 27/383 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M+ K S++ + LE + G P R R QI++WIY R + ++ M+D+ ++
Sbjct: 1 MSSDAKPSVLSLDLPALETWCAENGQP----RFRAEQIFRWIYARRAQSWEEMNDLPAKL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + FS+ E+ ++ D T K LL+ +E V + E R T+C+S+
Sbjct: 57 RTALAEQFSLFNSEVETHSVATDRTEKLLLKLR-----DGEFVECVLMREPDRNTICIST 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC +G L RNL EIL QV L D K++
Sbjct: 112 QVGCGMGCVFCASGLAGLTRNLQTAEILEQVARLDRLQSD---------------DEKLT 156
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
N+V+MGMGEPL N + +L ++GL+ RRIT+ST G I ++ L
Sbjct: 157 NVVVMGMGEPLANLKQLLPALERMQHALGLNLGVRRITVSTVGLPDRIRQLAAHGKPYNL 216
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++ LR+ +VP+N K L+ ++ A Y + RR+T+EYV+LKGINDS A
Sbjct: 217 AVSLHAPNDKLRDEIVPVNDKIGLDAVLSAADEYFE-TTGRRVTYEYVLLKGINDSLEHA 275
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L G A +NLIP N S + F+ ++++G ++ IR +G DI
Sbjct: 276 HELAEVLAGRNAHVNLIPMNAVSLLSIGGSSPQQARQFAAILEQAGTAATIRKRKGADID 335
Query: 360 AACGQLKS-LSKRIPKVPRQEMQ 381
AACGQL+ +++P V + +++
Sbjct: 336 AACGQLRLPKVQQMPDVQQLKVK 358
>gi|258647948|ref|ZP_05735417.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259]
gi|260851788|gb|EEX71657.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259]
Length = 360
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 198/375 (52%), Gaps = 37/375 (9%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
++ +K++L+G+ EL++ + +P QI +W+YV +R+ M+++S R
Sbjct: 3 DYQQKKNLLGLTPSELKDVARSLQLPA----FVGKQIARWLYVHHVREIDEMTNLSLAAR 58
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
LL Q + I +D + S DGT K+L R + IETV+IP+ RGTLCVSSQ
Sbjct: 59 ELLKQQYVIGNSSPIDAQYSKDGTIKYLYRTLS-----GDYIETVFIPDGDRGTLCVSSQ 113
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C+FC TG Q V +L+A +IL Q+ +++N
Sbjct: 114 VGCKMHCAFCMTGRQGYVASLSAADILNQIYSL-------------------PERERLTN 154
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
IV MG GEP N DNV ++ I + G ++S +RIT+ST G + + R +E LAI
Sbjct: 155 IVFMGQGEPFDNLDNVLRATEILTSPEGYAWSPKRITVSTIGLLQGLKRFLDESKCSLAI 214
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA---------RRITFEYVMLKGI 292
SLH R ++P+ R YP++ ++ + Y RR++FEY++ G+
Sbjct: 215 SLHHAVPAEREKIMPVERAYPIKDVVRLLKQYDFCRPRTNEGVGSKQRRLSFEYIVFSGV 274
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
NDS +DA +I++LKG+ +INLI F+ P D + ++ F + + G + IR
Sbjct: 275 NDSLKDAAAIIELLKGLDCRINLIRFHQIPDTPLKGVDDQKMLRFRDYLTAHGIFTTIRA 334
Query: 353 PRGLDILAACGQLKS 367
RG DI AACG L +
Sbjct: 335 SRGQDIFAACGLLST 349
>gi|34556516|ref|NP_906331.1| ribosomal RNA large subunit methyltransferase N [Wolinella
succinogenes DSM 1740]
gi|81833710|sp|Q7MSW1|RLMN_WOLSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|34482230|emb|CAE09231.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 359
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 140/375 (37%), Positives = 212/375 (56%), Gaps = 32/375 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ EEL+ L H R Q++ W+Y R +F+ M ++S+E+R L Q
Sbjct: 3 NIYDYTLEELKRRL--------HPPFRAKQLYHWLYHRYEEEFEKMHNLSKEIRQKLTQD 54
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV--------EIETVYIPEKSRGTLCVS 119
+S ++V E++S DG+RK+L + V E E I E + T+CVS
Sbjct: 55 YSATLTKVVREEVSEDGSRKYLFQTHDGLTYEAVLLKMKEKKEDEEGRIVEGEKYTICVS 114
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + CSFC+T VRNL+A EI+ Q++ + L P K
Sbjct: 115 SQVGCKVGCSFCFTAKGGFVRNLSAGEIVYQIVALKRLNALAP--------------EKR 160
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238
NIV MGMGEPL NF+N+ +++ I S+ GLS S +R T+STSG P I ++ ++GV
Sbjct: 161 VNIVYMGMGEPLDNFENLIQAIRILSELDGLSISTKRQTISTSGIAPKIEKLGALDLGVQ 220
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLHAV ++LR L+P+N+ Y + +I+A R +P + + +R+ FEY+++KG+ND +
Sbjct: 221 LAISLHAVDDELRTRLIPMNKAYNIASIIEAVRRFP-IDSRKRVMFEYLVIKGVNDDEKS 279
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+K+L GI +K+NLI FNP G E+ + +V F + + G IR +G+DI
Sbjct: 280 AKTLLKLLNGIKSKVNLIYFNPHEGSEFERPLESKMVAFQKYLTDRGLLCTIRESKGIDI 339
Query: 359 LAACGQLKSLSKRIP 373
AACGQL+ +
Sbjct: 340 SAACGQLREKIIKEE 354
>gi|288800113|ref|ZP_06405572.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str.
F0039]
gi|288333361|gb|EFC71840.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str.
F0039]
Length = 344
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 120/371 (32%), Positives = 193/371 (52%), Gaps = 29/371 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K++L+GM EL++A+ +G+ + QI KW+Y + + M++IS+ R
Sbjct: 2 MTDKQALLGMSLFELKQAVTNLGMAE----FTAKQIAKWLYSQHVSSIDEMTNISKSNRE 57
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L +HF I +D + S DGT K+L + +ETVYIP+K R TLCVSSQV
Sbjct: 58 KLKEHFYIGCANFIDAQYSKDGTIKYLFPTQS-----GKFVETVYIPDKDRATLCVSSQV 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q NLT+ +IL Q+ K++NI
Sbjct: 113 GCKMNCLFCQTGKQGFEGNLTSCDILNQIYSL-------------------PERDKLTNI 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MG GEP+ NFDNV ++ I + G ++S +RIT+S+ G + R E +AIS
Sbjct: 154 VFMGQGEPMDNFDNVLRTTQILTSDYGYAWSPKRITVSSVGVKGKLERFLNESDCHVAIS 213
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
+H R ++P + ++ +++ R+Y ++ RR++FEY++ G+ND+ A +
Sbjct: 214 MHNPIASERESIMPAEKGMSIDSIVELLRNY-DFAHQRRLSFEYIIFDGLNDTKEHAQYI 272
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +++G+ + NLI F+ P +++K + F + + G + IR RG DI AAC
Sbjct: 273 VDLVRGLECRFNLIRFHQIPNVSLNPTNEKKMELFRDYLTSHGVFTTIRASRGQDIFAAC 332
Query: 363 GQLKSLSKRIP 373
G L + K
Sbjct: 333 GLLSTAKKEKN 343
>gi|312194967|ref|YP_004015028.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
gi|311226303|gb|ADP79158.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
Length = 397
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 126/377 (33%), Positives = 181/377 (48%), Gaps = 22/377 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLL 64
L + R+E +++G P R Q+ + + R D GM+D+ VR L
Sbjct: 37 RHLADLSRDERRAVAVELGQPA----FRADQLARHYFTRLATPGDTAGMTDVPAAVRAPL 92
Query: 65 NQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
D TRK R IE+V + R T+CVSSQ G
Sbjct: 93 ADALLPQLLTATTTLTCDDGATRKTAWRTV-----DGATIESVLMRYPDRATVCVSSQAG 147
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNLT EI+ QV+ A +L + ++SN+V
Sbjct: 148 CGMGCPFCATGQGGLTRNLTVAEIVEQVVDAARVLRRGGLPAG------QATDTRLSNVV 201
Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ + +L SD GL S R +T+ST G VP I R+ E V LA
Sbjct: 202 FMGMGEPLANYKALVTALRRISDPAPDGLGISARTLTVSTVGLVPAIGRLAGEGLPVRLA 261
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++LR+ LVPIN ++ + ++DA Y + RRI+ EY ++ G+ND P A
Sbjct: 262 VSLHAPDDELRDTLVPINTRWKVAEVLDAAWDYAART-GRRISIEYALIDGVNDQPERAD 320
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++L+ P +NLIP NP G + S F ++ G ++ +R RG +I A
Sbjct: 321 LLGRLLRDRPVHVNLIPLNPTRGSSWHASAPAGEREFVARLRARGITTTVRDTRGREIAA 380
Query: 361 ACGQLKSLSKRIPKVPR 377
ACGQL + + + R
Sbjct: 381 ACGQLAADNAAVDHGRR 397
>gi|313203965|ref|YP_004042622.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312443281|gb|ADQ79637.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 345
Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats.
Identities = 130/374 (34%), Positives = 201/374 (53%), Gaps = 29/374 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K +L+G +EL++ + ++G+P QI +W+Y + + M++IS + R L
Sbjct: 1 MDKIALVGKNIDELKDIVSELGMPA----FTAKQISEWLYKKRVFSLDEMTNISAKNRAL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + V S DGT+K+L R G IE+VYIP++ R TLCVSSQVG
Sbjct: 57 LAAKYDVGRSLPVQAVESTDGTKKYLFRTE-----GGHFIESVYIPDEDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q LT EIL Q++ ++N+V
Sbjct: 112 CKMGCMFCMTGKQSFTAQLTTTEILNQIMSI-------------------PEAETLTNLV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEP N + +SL I + G +S RRIT+S+ G +P + E LAISL
Sbjct: 153 FMGMGEPFDNTLAMLRSLEILTADYGYGWSPRRITVSSIGLIPGMKVFLERSNCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ ++ R L+PI + +P+ ++D R + S+ RR++FEY++ G+NDS R A+ L+
Sbjct: 213 HSPFSEERLKLMPIEKSFPIAKVLDEIRKH-DFSHQRRVSFEYILFDGVNDSMRHAVELV 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+GI ++NLI F+ PG + S + + F + + +G +S IR RG DI AACG
Sbjct: 272 KLLRGIDCRVNLIRFHAIPGIDLKSSTPEKMTFFRDYLTSNGVTSTIRRSRGEDIFAACG 331
Query: 364 QLKSLSKRIPKVPR 377
L +L K + +
Sbjct: 332 MLSTLEKEKEEAQQ 345
>gi|119025804|ref|YP_909649.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
adolescentis ATCC 15703]
gi|154487364|ref|ZP_02028771.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
L2-32]
gi|205829670|sp|A1A1I4|RLMN_BIFAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|118765388|dbj|BAF39567.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
gi|154083882|gb|EDN82927.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
L2-32]
Length = 386
Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 186/374 (49%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L M EE ++G+P + R Q+ Y + + SD R
Sbjct: 31 KPPLHFADMSEEERIGKAKELGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAARRSD 86
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F V +++ T K L R IE+V + +R TLC+SSQV
Sbjct: 87 AAEAFFPELIHEVTRQVADGGTTIKTLWRL-----FDGSLIESVLMRYPTRTTLCISSQV 141
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++A EI+ QV +A + D ++SNI
Sbjct: 142 GCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGSG---------RLSNI 192
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ EE I V L
Sbjct: 193 VFMGMGEPMGNYKSVLSAVRQISSMPPEGFGISARNITVSTVGVVPGIRKLAEEGIPVRL 252
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A
Sbjct: 253 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 311
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + +G ++ +R RG
Sbjct: 312 KLLAKRLNHYGDDWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQ 371
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 372 DIDGACGQLAAKER 385
>gi|332880555|ref|ZP_08448229.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332681543|gb|EGJ54466.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 344
Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats.
Identities = 129/369 (34%), Positives = 195/369 (52%), Gaps = 29/369 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K +L+GM EL+ +IG+P Q+ +W+Y + + M++IS + R
Sbjct: 1 MEDKIALLGMTLAELKAVAGEIGMP----SFAARQMAEWLYGKKVASIDEMTNISAKNRR 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LLN+ +++ VD + S DGT K+L R A +ETVYIP+ R TLCVSSQV
Sbjct: 57 LLNERYTVGCAAPVDGQRSADGTVKYLYRTAAGGY-----VETVYIPDGDRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q LTA +IL Q+ ++N+
Sbjct: 112 GCRMNCRFCMTGKQGFSGQLTAADILNQLYSL-------------------PERDTLTNV 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MG GEPL N DNV ++ I + G ++S +RIT+ST G + R +E LA+S
Sbjct: 153 VFMGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH D R +L+P Y L ++ R Y ++ RR++FEY M +G+ND+P A L
Sbjct: 213 LHNPFADQRALLMPAENSYGLREIVALLREY-DFTHQRRLSFEYTMFEGVNDTPAHAKEL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++L G+ ++NLI F+P PG + + ++ ++ F + + G S IR RG DI AAC
Sbjct: 272 LRLLDGLECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAAC 331
Query: 363 GQLKSLSKR 371
G L + ++
Sbjct: 332 GLLSTAKQQ 340
>gi|153809258|ref|ZP_01961926.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185]
gi|149128028|gb|EDM19249.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185]
Length = 344
Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats.
Identities = 132/367 (35%), Positives = 197/367 (53%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ ++G+P QI W+Y + + M+++S + R L
Sbjct: 1 MSKYPLLGMTLVELQSLAKRLGMPG----FAAKQIASWLYDKKVASIDEMTNLSLKYREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q++ + VDE S DGT K+L + G +E+VYIP+ R TLCVSSQVG
Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYKV-----GENHFVESVYIPDDDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYKANLTASQIINQI-------------------HSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V ++L I + G ++S +RITLST G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLQALEIMTADYGYAWSPKRITLSTVGLRKGLKRFIEESDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P + Y + +++ ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPLAVQRSELMPAEKGYSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ +INLI F+ PG + +D + F + + G + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVDLEGADMDTMTRFRDYLTTHGLFTTIRSSRGEDIFAACG 331
Query: 364 QLKSLSK 370
L + +
Sbjct: 332 MLSTAKQ 338
>gi|288803681|ref|ZP_06409111.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18]
gi|288333921|gb|EFC72366.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18]
Length = 350
Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats.
Identities = 123/372 (33%), Positives = 191/372 (51%), Gaps = 29/372 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+GM EL+E +G+P QI KW+Y + ++ M++IS+ R L
Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++I E +D + S DGT K+L +ETVYIP++ TLCVSSQVGC
Sbjct: 61 AEYAIGCKEPIDAQHSKDGTIKYLFPT-----DSGKFVETVYIPDEDHATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q +L+A +IL Q+ K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIYSL-------------------PERDKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
G GEP+ N DNV ++ I + G +S +RIT+S+ G + R +E +AIS+H
Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R+ L+P + ++ +I+ +Y S+ RR++FEY++ K NDS A ++++
Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNY-DFSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ ++NLI F+P P D + F + + G + IR RG DI AACG L
Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335
Query: 366 KSLSKRIPKVPR 377
+ K + R
Sbjct: 336 STAKKIEEERGR 347
>gi|317056479|ref|YP_004104946.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7]
gi|315448748|gb|ADU22312.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7]
Length = 348
Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats.
Identities = 117/344 (34%), Positives = 181/344 (52%), Gaps = 26/344 (7%)
Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-K 87
+ R QI++W++V+ + F M+++S ++R L + F + IV S K
Sbjct: 28 GEKKFRAKQIFEWLHVKRVDSFDKMTNLSVQLREKLKKIFCLKSLFIVKRLESNTDNTVK 87
Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
+L R P +ETV + T+CVS+QVGC + C FC + R+L + EI
Sbjct: 88 YLYRLP-----DGNHVETVIMEYNYGNTVCVSTQVGCKMGCRFCASTIAGYKRDLASSEI 142
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
LLQ+ A GRKI+ V+MG+GEP+ NFDNV L + S
Sbjct: 143 LLQIYEAAR-----------------DSGRKITGAVLMGIGEPMDNFDNVVNFLKVLSCE 185
Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEML 266
G + S R +++ST G VP I + E G+ L++SLHA +N R+ ++P+N +Y + L
Sbjct: 186 QGTNMSLRHVSVSTCGIVPRIYELAEMKLGITLSVSLHASNNKARSEIMPVNNRYDIGEL 245
Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ ACR+Y ++ RRI+FEY ++ G ND DA L +LK +N+IP N Y
Sbjct: 246 MTACRYYFKVT-GRRISFEYALIDGHNDKQSDAEELAALLKNFVCHVNIIPVNKIKERNY 304
Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
SD+K F + +++ G ++ +R G DI AACGQL+ +
Sbjct: 305 -RSDRKAADRFRQRLEKLGLNATVRRTLGSDIDAACGQLRREYE 347
>gi|260911598|ref|ZP_05918183.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str.
F0295]
gi|260634304|gb|EEX52409.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str.
F0295]
Length = 355
Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats.
Identities = 122/365 (33%), Positives = 191/365 (52%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+G +EL+ + G+P Q+ W+Y + + + M++IS+ R L
Sbjct: 5 KIPLLGHTLDELKAIAVDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKANREKLA 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QH+ I + +D + S DGT K+L + +ETVYIP++ R TLCVS QVGC
Sbjct: 61 QHYEIGAAKFIDAQYSKDGTIKYLFPTES-----GKFVETVYIPDRDRATLCVSCQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLTA +IL Q+ +K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTARDILNQIYAL-------------------PEQQKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
G GEP+ N DNV K I + G ++S +RIT+S+ G + R +E +AIS+H
Sbjct: 157 GQGEPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ R ++P + +E ++ + Y ++ RR++FEY+M G+ND+P A L+K+
Sbjct: 217 PIPEQRASIMPAEKGLSIEEIVQLLKQY-DFTHQRRLSFEYIMFGGLNDTPLHARQLVKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G+ ++NLI F+ P SD+K + TF + + G + IR RG DI AACG L
Sbjct: 276 VEGLDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLL 335
Query: 366 KSLSK 370
+ +
Sbjct: 336 STAKQ 340
>gi|121533699|ref|ZP_01665526.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1]
gi|121307690|gb|EAX48605.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1]
Length = 350
Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 26/373 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K ++ G +E+ + + + G+ + R QI +WIY RG+ F M+++ + R LL
Sbjct: 2 KTNIFGYFAQEISDLIAQYGLE----KYRGRQIAEWIYRRGVSRFADMTNLPLKKRDLLA 57
Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++F+I ++ + S T K+LL+F +ETV + +LCVS+QVGC
Sbjct: 58 ENFTIDTVYVMAAQHSADGKTSKFLLKFT-----DGAAVETVLMRHSYGNSLCVSTQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + Q + RNL+ EIL Q + +LL S ++++IV+
Sbjct: 113 GMGCIFCASTLQGVARNLSGGEILAQAIYVNNLL--------------LSAQTRLNSIVI 158
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEPL N+DNV + + + + L+ S R ITLST G VP + ++ E + LA+SL
Sbjct: 159 MGSGEPLANYDNVLRFIRLCHEPYCLNLSYRSITLSTCGLVPEMRKLAAEGLPITLAVSL 218
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N+LR+ ++PINR+YP+E +++A +Y + RR+T+EY ++KG+ND A L
Sbjct: 219 HAPNNELRSQIMPINRRYPIEEVVEAADYYAA-TTGRRVTYEYTLIKGVNDGLEQAYELA 277
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L G A +NLI N P LC D+K I F + + R ++ +R G DI AACG
Sbjct: 278 RLLAGRLANVNLIAVNAVPERGLLCPDEKQIAAFEQTLLRQNINTTVRRKMGADIQAACG 337
Query: 364 QLKSLSKRIPKVP 376
QL+ +
Sbjct: 338 QLRKKVLAQQEAR 350
>gi|282879497|ref|ZP_06288231.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1]
gi|281306644|gb|EFA98670.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1]
Length = 350
Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 197/372 (52%), Gaps = 30/372 (8%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N +KK+ L+GM EL+E + + +P QI KW+Y++ + M+++S+ R
Sbjct: 7 NIVKKK-LMGMTLSELQEVVHHLNMPT----FTAGQIAKWLYLQQVTSIDEMTNLSKNNR 61
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+L + F I + +D + S DGT K+L + +ETVYIP++ R TLCVSSQ
Sbjct: 62 QILQESFEIGCMKPLDAQYSKDGTIKYLFPTAS-----GNLVETVYIPDQDRATLCVSSQ 116
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C FC TG Q NLT +IL Q+ K++N
Sbjct: 117 VGCKMNCLFCQTGKQGFEGNLTYTDILNQIYSL-------------------PEREKLTN 157
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
IV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R +E +AI
Sbjct: 158 IVFMGQGEPMDNIDNVLRATQILTAPYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAI 217
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ + R L+P + P++ +++ R Y ++ RR++FEY++ G NDS R A
Sbjct: 218 SLHSAIPEQRRELMPAEKAMPIQEIVELLREY-DFAHQRRLSFEYIVFDGENDSIRHAQK 276
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++++L+G+ ++NLI F+ P +D + F + + G + IR RG DI AA
Sbjct: 277 VVELLRGLDCRVNLIRFHQIPNVSLRGTDTATMERFRDYLTSHGIFTTIRASRGQDIFAA 336
Query: 362 CGQLKSLSKRIP 373
CG L + K+
Sbjct: 337 CGLLSTAKKKTT 348
>gi|212695668|ref|ZP_03303796.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM
7454]
gi|212677341|gb|EEB36948.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM
7454]
Length = 343
Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 122/371 (32%), Positives = 195/371 (52%), Gaps = 30/371 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ K+++ EELE+ L +G + R Q+++ I+V I DF M+D+S+++R
Sbjct: 1 MIMKQTINDKTIEELEKIFLDLGF----KKFRAKQVFRQIHVNKINDFSKMTDLSKKMRE 56
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L+++F ++V E S D T+K+L IE V++ +R T+C+SSQ
Sbjct: 57 DLDKYFYFPKIKVVKEFKSNLDKTKKYLFEL-----DDKNIIEAVFMEYNNRNTICISSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C FC + L R+L+A EI+ ++ L D ISN
Sbjct: 112 VGCRMGCKFCASTKNGLERSLSASEIIEEIYLLERENSD------------------ISN 153
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
IV+MG+GEPL NF N++K + I +D G + S R IT+ST G V I + + LA
Sbjct: 154 IVVMGIGEPLDNFSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDINLA 213
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++ R +P KY ++ +I AC +Y + R+++EYV++ G+N+ D
Sbjct: 214 VSLHYAFDEKRMAYMPSGNKYKIKDIIKACDYYLEKTKR-RVSYEYVVIDGVNNLREDID 272
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K+ KG INLIP NP +Y + + F + + + G ++ IR G DI A
Sbjct: 273 QLEKLFKGKNIHINLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMGSDIDA 332
Query: 361 ACGQLKSLSKR 371
+CGQL++ R
Sbjct: 333 SCGQLRNNYAR 343
>gi|221195097|ref|ZP_03568153.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626]
gi|221185000|gb|EEE17391.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626]
Length = 361
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 183/368 (49%), Gaps = 28/368 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L + E+ E + +G P + R Q+ W++ +G F MS++ + +R L
Sbjct: 21 KRGLKTLSHAEIVELVENLGQP----KFRAKQLEDWMWSKGATSFDQMSNLPKSLRAGLA 76
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ S V ++S DG+RK+LL++P V +E V +P ++ +C S+Q GC+
Sbjct: 77 KTVSFQSITQVTRQLSQDGSRKYLLQYP-----DNVCVECVGMPTGNKLAVCASTQAGCA 131
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG L R+L+A EI QVL R+ ++S++V M
Sbjct: 132 MGCAFCATGAAGLTRSLSASEIYDQVLHIRNDF-----------------EMRVSSVVFM 174
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N+DN ++L + + GL R +T+ST G +P I R E LA+SLH
Sbjct: 175 GQGEPFMNYDNALEALRLLNSPHGLGIGARHLTISTCGVIPMIKRFANEPEQFTLAVSLH 234
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ R+IL+P RKY L L D Y + RR T+EY ++ GINDS + L
Sbjct: 235 SAVQKTRDILMPGVRKYSLLHLYDIMGEYVEKT-GRRPTYEYALIGGINDSENELGALRD 293
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+G A +NLI N PG ++ S F + G + IR RG DI AACGQ
Sbjct: 294 FCRGTLAHVNLIQLNEIPGSKFHPSTPARAQQFVTKLGEVGVEATIRISRGADIDAACGQ 353
Query: 365 LKSLSKRI 372
L +++
Sbjct: 354 LSQKLRQL 361
>gi|54026096|ref|YP_120338.1| ribosomal RNA large subunit methyltransferase N [Nocardia farcinica
IFM 10152]
gi|81373742|sp|Q5YS67|RLMN_NOCFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|54017604|dbj|BAD58974.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 369
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 182/372 (48%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + E+ A+ ++G+P + R QI + Y R D M+D+ VR
Sbjct: 16 MPPRHLADLDAEQRRAAVAELGLP----KFRADQIARQYYGRLEADPARMTDLPAPVREQ 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ ++V DG + L G +E+V + R TLC+SSQ G
Sbjct: 72 IGAALFPRLLDVVKHVACDDGRTRKTL----WRAGDGTLLESVLMRYADRNTLCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + L D ++SNIV
Sbjct: 128 CGMACPFCATGQGGLNRNLSTAEIVDQVRAAAAALRDGAVAGGPG---------RLSNIV 178
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V ++ GL S+R + +ST G P I ++ +E V LA
Sbjct: 179 FMGMGEPLANYKRVVAAVRRITAPAPDGLGISQRNVVVSTVGLAPAIRKLADEGLSVTLA 238
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++P+ ++DA R+Y + RR++ EY +++ IND P A
Sbjct: 239 VSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYAD-TTGRRVSVEYALIRDINDQPWRAD 297
Query: 301 NL-IKILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K+ K + +N+IP NP PG ++ S + F + G +R RG +
Sbjct: 298 MLGAKLHKALGSRVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNEQGVPCTVRDTRGQE 357
Query: 358 ILAACGQLKSLS 369
I AACGQL + +
Sbjct: 358 IAAACGQLAAEN 369
>gi|288922416|ref|ZP_06416604.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f]
gi|288346219|gb|EFC80560.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f]
Length = 380
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 121/376 (32%), Positives = 184/376 (48%), Gaps = 23/376 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR--GIRDFQGMSDISQEVRHLL 64
L + R+E +G+P R Q+ + + R D M+D+ +VR L
Sbjct: 23 RHLADLSRDERRAVAESLGLPA----FRADQLARHYFARHLRAEDAAAMTDLPAQVRATL 78
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ P ++ + D + R + +IE+V + R T+CVSSQ GC
Sbjct: 79 VDS---LLPRLLTAATTADCDGGQTRKTVWRTV-DGAKIESVLMRYPQRTTVCVSSQAGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG L RNL+ EI+ QV+ A + + SN+V
Sbjct: 135 GMACPFCATGQGGLTRNLSTAEIVEQVVDAARTMTRGGLPGGPGRL---------SNVVF 185
Query: 185 MGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
MGMGEPL N++ + +L GL S R +T+ST G VP I R+ E V LA+
Sbjct: 186 MGMGEPLANYNALLAALRRLIEPTPDGLGLSARSLTVSTVGLVPGIRRLAGEGLPVTLAL 245
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++LRN LVPIN ++P+ +++A Y ++ RR++ EY ++ G+NDSP A
Sbjct: 246 SLHAPDDELRNELVPINTRWPVAEVLEAAWDYARIT-GRRVSIEYALIDGVNDSPERADA 304
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L G A +NLIP NP G + S + F + ++ G ++ +R RG +I AA
Sbjct: 305 LGALLAGQLAHVNLIPLNPTDGSSWQASAPRGQRVFVDRLRARGVTATVRDTRGREIAAA 364
Query: 362 CGQLKSLSKRIPKVPR 377
CGQL + + R
Sbjct: 365 CGQLAAEPPARRRTGR 380
>gi|189463574|ref|ZP_03012359.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136]
gi|189429677|gb|EDU98661.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136]
Length = 349
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 128/374 (34%), Positives = 191/374 (51%), Gaps = 29/374 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+G E++ + +G+P QI W+Y + + M+++S + R L
Sbjct: 5 KIPLLGKTLSEIQGIVHGLGMPG----FTAKQIVAWLYDKKVFSIDDMTNLSLKNRERLK 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+++ I + E S DGT K+L P IE+VYIP++ R TLCVSSQVGC
Sbjct: 61 ENYEIGVTAPIHEMRSVDGTVKYLFCTP-----EGDYIESVYIPDEDRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q +LT +IL Q+ K++NIV M
Sbjct: 116 MNCKFCMTGKQGYTNSLTPTQILNQIYSI-------------------PERDKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP N D V +SL I + G ++S +RIT+ST G + R EE LA+SLH+
Sbjct: 157 GMGEPFDNLDAVLRSLEILTADYGYAWSPKRITVSTVGLRKGLERFLEESDCHLAVSLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P + + + +ID R Y S RR++FEY++ KG+NDS A LIK+
Sbjct: 217 PFPAQRRELMPAEKAFSITEIIDILRRY-DFSKQRRLSFEYIVFKGVNDSMLYAKELIKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ +INLI F+ P + +D + ++ F + + + G + IR RG DI AACG L
Sbjct: 276 LRGLDCRINLIRFHAIPNVDLEGTDMESMLAFRDYLTQHGVFATIRASRGEDIFAACGML 335
Query: 366 KSLSKRIPKVPRQE 379
+ ++ K
Sbjct: 336 STAKRQAEKNKETN 349
>gi|293370817|ref|ZP_06617362.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f]
gi|298481513|ref|ZP_06999705.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22]
gi|292634033|gb|EFF52577.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f]
gi|295086976|emb|CBK68499.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides xylanisolvens
XB1A]
gi|298272377|gb|EFI13946.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22]
Length = 344
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 130/370 (35%), Positives = 197/370 (53%), Gaps = 29/370 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ ++G+P QI W+Y + + M+++S + R L
Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q++ + VDE S DGT K+L + G +E+VYIP+ R TLCVSSQVG
Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYKV-----GENHFVESVYIPDDDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331
Query: 364 QLKSLSKRIP 373
L + +
Sbjct: 332 MLSTAKQEKN 341
>gi|304437062|ref|ZP_07397025.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370013|gb|EFM23675.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 346
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 124/363 (34%), Positives = 190/363 (52%), Gaps = 26/363 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ G M+ EL +AL + GIP R R QI +W+Y RG F M ++ + +R L +
Sbjct: 2 NIFGWMKTELADALREEGIP----RFRADQIIRWMYQRGAVSFDVMDNLPKLLRAQLAER 57
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
FSI P++ S T K L F ETV + ++CVS+Q GC +
Sbjct: 58 FSIERPQVGARLTSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + L RNLT EI QV+ L G ++ IV+MG
Sbjct: 113 GCAFCASTLHGLARNLTVGEIAAQVIGMADYLRQ--------------EGARVDTIVVMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEP+ N+DNV +L + + S R +TLSTSG VP I R+ EE + L+ISLHA
Sbjct: 159 SGEPMENYDNVIGALRLLHAEETIGLSYRGMTLSTSGIVPGILRLAEEGLPISLSISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +LR+ L+P+NR YP+ ++ A Y + R+T+EY++++ +ND R+A L ++
Sbjct: 219 PTEELRSSLMPVNRMYPMAEVLRAAELYAARTKR-RVTYEYILIRDVNDGVREAEQLARL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G A +NLIP +P ++ ++ F ++ ++ +R G DI AACGQL
Sbjct: 278 LRGQLASVNLIPIDPVAERHLFRPPRETVLRFQRILEAHHVTATVRREMGTDIQAACGQL 337
Query: 366 KSL 368
+S
Sbjct: 338 RSR 340
>gi|283956169|ref|ZP_06373654.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
1336]
gi|283792323|gb|EFC31107.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
1336]
Length = 356
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 138/377 (36%), Positives = 201/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S DG+ K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I S + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|227549023|ref|ZP_03979072.1| possible Fe-S-cluster redox protein [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078877|gb|EEI16840.1| possible Fe-S-cluster redox protein [Corynebacterium
lipophiloflavum DSM 44291]
Length = 367
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 116/374 (31%), Positives = 184/374 (49%), Gaps = 31/374 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + + +EE EAL ++G+P + R QI + Y + D M+D+ + R L
Sbjct: 16 MPPKHFADLSKEERIEALAELGLP----KFRADQIARHYYGKFQADPLTMTDLPESQRQL 71
Query: 64 LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F + EI + T K L R + +E+V + R TLC+SSQ
Sbjct: 72 VKDALFPTLLTEIRSLETDEGDTTKTLWRLH-----DGILLESVLMRYPDRATLCISSQA 126
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A + + + G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVRAAAARM--------------HAEGSRLSNI 172
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N++ V ++ G S+R +T+ST G P I ++ +E L
Sbjct: 173 VFMGMGEPLANYNRVVSAVRQITQPTPDGFGISQRNVTVSTVGLAPQIRKLADEGLSCTL 232
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ + +++A +Y + RR++ EY +++ IND A
Sbjct: 233 AVSLHTPDDELRDELVPMNNRFSVADVLEAASYYAEQT-GRRVSIEYALIRDINDHDFRA 291
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L + L +NLIP NP PG ++ S + F + G + +R +G
Sbjct: 292 DMLGRKLHDALGSKVHVNLIPLNPTPGSKWDASPRARQDEFVRRVIAQGVTCTVRDTKGQ 351
Query: 357 DILAACGQLKSLSK 370
+I AACGQL + K
Sbjct: 352 EIAAACGQLAAEEK 365
>gi|315635461|ref|ZP_07890727.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
gi|315480219|gb|EFU70886.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
Length = 360
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 131/378 (34%), Positives = 202/378 (53%), Gaps = 35/378 (9%)
Query: 4 LKK---ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ K S+ +EL+E L R Q++ W+Y + + M ++ +E+
Sbjct: 1 MAKEALPSIYDYTLDELKEILK--------PSFRAKQVYNWLYKKYASSYDEMKNLPKEL 52
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR--------CIGGPVEIETVYIPEKS 112
L +++ I +IV ++ S DG+ K+L + + E I
Sbjct: 53 VEDLKENYPIDIMQIVKKEQSRDGSIKYLFKLRDNHTVEAVLLLMKDKKIDEDGQIVRSE 112
Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
+ T+C+SSQVGC + CSFC T VRNLT E + Q++ +
Sbjct: 113 KYTVCISSQVGCKVGCSFCLTAKGGFVRNLTVGEYIAQIVNIKRD--------------N 158
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
K NIV MGMGEPL NFDN K++ I S+ GL+ S+RR T+STSG I ++G
Sbjct: 159 DIAENKALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQTVSTSGIATKIKKLG 218
Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
E ++ + LAISLHAV ++LR+ L+P+N+ Y + +I+A + +P + +++ FEY+++K
Sbjct: 219 EKDLQIQLAISLHAVDDELRSELIPMNKAYNIASIIEAVKAFP-VDTRKKVMFEYLVIKD 277
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
NDS A L+ +L GI AK+NLI FNP+PG Y +KD++ F + + + G IR
Sbjct: 278 KNDSIEAAKKLVSLLNGIQAKVNLIYFNPYPGTSYQRPQEKDMLKFKDFLNQKGVICTIR 337
Query: 352 TPRGLDILAACGQLKSLS 369
+GLDI AACGQLK
Sbjct: 338 ESKGLDISAACGQLKEKE 355
>gi|257068200|ref|YP_003154455.1| ribosomal RNA large subunit methyltransferase N [Brachybacterium
faecium DSM 4810]
gi|256559018|gb|ACU84865.1| radical SAM enzyme, Cfr family [Brachybacterium faecium DSM 4810]
Length = 429
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 117/386 (30%), Positives = 183/386 (47%), Gaps = 28/386 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E A+ ++G+P R Q+ + + ++D+ ++ R L +
Sbjct: 53 VHLADLSLTERVAAVEEMGLPG----FRAKQLSVHYFEHFTTAAEDLTDLPRDRRDELVE 108
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V + + T+K+L + +E+V + R TLC+SS+ GC
Sbjct: 109 RFFPPLLTQVSRQSADHGATQKFLWQL-----FDGPMVESVLMRYSDRNTLCISSEAGCG 163
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+A EIL QV +A +L +P +++NIV M
Sbjct: 164 MNCPFCATGQMGLTRNLSAAEILEQVRIANRMLA---------REELPGGPGRVNNIVFM 214
Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
GMGEPL N+ V A G R IT+ST G P + ++ E+I V LA+S
Sbjct: 215 GMGEPLANYRPVATVCKRLNAPAPEGFGMGARHITVSTVGLAPAVRKLTAEKIPVTLAVS 274
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA + LR+ LVPIN ++ ++ ++DA Y + RR++ EY +++ IND A L
Sbjct: 275 LHAPDDALRDELVPINTRFDVDEILDAAWEYFEAT-GRRVSIEYALIRDINDQQHRAQLL 333
Query: 303 IK----ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
+ +N IP NP G ++ SD + TF E ++ +G S+ IR RG DI
Sbjct: 334 AERLIAKGGAHWVHVNPIPLNPVKGSKWTASDPQVEKTFVETLRDNGISATIRDTRGSDI 393
Query: 359 LAACGQLKSLSKRIPKVPR-QEMQIT 383
ACGQL + +E ++
Sbjct: 394 DGACGQLAAEVIETDTHREDREARVA 419
>gi|305432592|ref|ZP_07401753.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
gi|304444303|gb|EFM36955.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
Length = 356
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 139/379 (36%), Positives = 202/379 (53%), Gaps = 32/379 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EELEE + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELINILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q + + V + S DG+ K+L V + +R
Sbjct: 53 ELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEGKRISHTRY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I S + GL+ S RR T+STSG I +GE
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSKRI 372
+GLDI AACGQLK +K +
Sbjct: 338 KGLDISAACGQLKERAKEL 356
>gi|212715800|ref|ZP_03323928.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
16992]
gi|212661167|gb|EEB21742.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
16992]
Length = 406
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 123/374 (32%), Positives = 184/374 (49%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L M EE +G+P + R Q+ Y + + SD R
Sbjct: 51 KPPLHFADMTEEERITKAKDLGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAAKRVE 106
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F V +++ + T K L R IE+V + +R TLC+SSQV
Sbjct: 107 AAEIFFPTLITEVTRQVADEGTTIKTLWRL-----FDGSLIESVLMRYPTRTTLCISSQV 161
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++A EI+ QV +A + D ++SNI
Sbjct: 162 GCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPG---------RLSNI 212
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 213 VFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLMAEGIPVRL 272
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA +++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A
Sbjct: 273 AVSLHAPNDELRDELVPMNKRFNTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 331
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G + S +D F + + ++G ++ +R RG
Sbjct: 332 KLLAKRLNHYGDNWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHKAGITATLRDTRGQ 391
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 392 DIDGACGQLAAKER 405
>gi|237739801|ref|ZP_04570282.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
gi|229423409|gb|EEO38456.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
Length = 358
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 129/378 (34%), Positives = 202/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + IR+F M+++S +
Sbjct: 1 MNN-EKVNILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L ++ I + ++ ++S D T K+L + G +E + + R T
Sbjct: 56 REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDK---GTIETVLLRHRDSKNKEIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL QV L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG V I + + E+
Sbjct: 159 DESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LA+SLH+ ND R+ ++PIN+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAVSLHSAINDKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SEADANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|205829715|sp|Q8YZV0|RLMN_ANASP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
Length = 355
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 126/364 (34%), Positives = 183/364 (50%), Gaps = 31/364 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EL + + G P R Q+ WIY +G+R +S S++ R +
Sbjct: 22 LLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV- 76
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I I ++ DGT K+LL+ +E V IP R T+CVS+QVGC + C
Sbjct: 77 PIGRSTIHHRSVASDGTVKYLLQLS-----DGEIVEAVGIPTDKRLTVCVSTQVGCPMAC 131
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNL EI+ QVL + +++S++V MGMG
Sbjct: 132 DFCATGKGGYKRNLERHEIVDQVLTVQEDF-----------------QQRVSHVVFMGMG 174
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N +NV L + +G+ +R +TLST G I+ + E V LA+SLHA +
Sbjct: 175 EPLLNTENVLAGLRSLNQDVGIG--QRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPN 232
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P R Y +E L+ CR Y ++ RRI+FEY++L G+ND P AL L K L+
Sbjct: 233 QALREQLIPSARSYHIEDLLAECREYVAIT-GRRISFEYILLAGVNDLPEHALELSKHLR 291
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G +NLIP+N +Y I F +++ + +R RGL+ AACGQL++
Sbjct: 292 GFQNHVNLIPYNSIDEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRT 351
Query: 368 LSKR 371
+ R
Sbjct: 352 KASR 355
>gi|237715676|ref|ZP_04546157.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262408684|ref|ZP_06085230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294807293|ref|ZP_06766107.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b]
gi|299148689|ref|ZP_07041751.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23]
gi|229444385|gb|EEO50176.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262353549|gb|EEZ02643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294445591|gb|EFG14244.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b]
gi|298513450|gb|EFI37337.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23]
Length = 344
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 130/370 (35%), Positives = 197/370 (53%), Gaps = 29/370 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ ++G+P QI W+Y + + M+++S + R L
Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q++ + VDE S DGT K+L + G +E+VYIP+ R TLCVSSQVG
Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYKV-----GENHFVESVYIPDDDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIMNQI-------------------HSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331
Query: 364 QLKSLSKRIP 373
L + +
Sbjct: 332 MLSTAKQEKN 341
>gi|322379396|ref|ZP_08053767.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1]
gi|321148214|gb|EFX42743.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1]
Length = 383
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 127/373 (34%), Positives = 196/373 (52%), Gaps = 28/373 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SL + EEL+ QI+ W+Y R F M ++ + ++ L +
Sbjct: 25 QSLYNLTFEELQTYAADH----HFKPFVAKQIFAWLYQRYATSFDQMHNLPKSLKTTLQR 80
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
F I +++ ++ S D + K L + V + I + + T C+
Sbjct: 81 DFCIQNLKLLVKECSQDKSEKCLFATHDQHSFESVFMVMKEKQIGDKGQILAQEKLTFCL 140
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQ+GC + C FC T VRNL A EI+ QV+ + + P
Sbjct: 141 SSQIGCKVGCVFCATAKGGFVRNLKAGEIVEQVVALKRMHSLEPTKGI------------ 188
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
N+V MGMGEPL NF+ V +SL I S GL+ S RRITLSTSG VP + + +GV
Sbjct: 189 --NLVFMGMGEPLHNFEQVVRSLKILSHPHGLNISPRRITLSTSGVVPMMDILGALNLGV 246
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLHAV+++LR+ L+PIN+ Y ++ LI A R +P + +R+ FEY+++K ND
Sbjct: 247 QLAISLHAVNDELRSKLMPINKTYNIQELIKAARRFP-IDARKRLMFEYLVIKDYNDGLE 305
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A L+++L G+ +KINLIP+NP ++ D + + F++ + + G +R +GLD
Sbjct: 306 HAKALLRLLNGLRSKINLIPYNPTTHSKFERPDLEKVKQFADFLNQRGLLCTMRLSKGLD 365
Query: 358 ILAACGQLKSLSK 370
I AACGQL+ ++
Sbjct: 366 ISAACGQLREKTR 378
>gi|134102464|ref|YP_001108125.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora
erythraea NRRL 2338]
gi|291004145|ref|ZP_06562118.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora
erythraea NRRL 2338]
gi|205829872|sp|A4FMC5|RLMN_SACEN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|133915087|emb|CAM05200.1| predicted Fe-S-cluster redox enzyme [Saccharopolyspora erythraea
NRRL 2338]
Length = 369
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 117/372 (31%), Positives = 181/372 (48%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + +E A+ ++G R Q+ + R D + M+DI R
Sbjct: 16 MPPRHLADLSADERRAAVTELG----EKPFRARQLAHHYFGRLNADVESMTDIPAGSRAK 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L V + +GT + L +E+V + R T+C+SSQ G
Sbjct: 72 LGADLLPTLLTPVRNLDTDEGTTRKTL----WRAHDGTLLESVLMRYPDRATVCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A +++ D +P ++SN+V
Sbjct: 128 CGMACPFCATGQGGLQRNLSTAEIVDQVRSAAAMMRD---------GEVPGGPGRLSNVV 178
Query: 184 MMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240
MGMGEPL N+ V ++ GL S+R +T+ST G VP I R+ E++ V LA
Sbjct: 179 FMGMGEPLANYKRVINAVHRICDPAPEGLGLSQRSVTVSTVGLVPAIRRMTAEDLHVTLA 238
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ +E ++ A R Y + RR++ EY +++ IND P A
Sbjct: 239 VSLHTPDDELRDTLVPVNNRWKVEEVLQAARGYADHT-GRRVSIEYALIRDINDQPWRAD 297
Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K+L +NLIP NP PG ++ S + F ++ +G +R RG +
Sbjct: 298 LLGKLLHKHLGQFVHVNLIPLNPTPGSKWDASPKPVEREFVRRVREAGVPCTVRDTRGQE 357
Query: 358 ILAACGQLKSLS 369
I AACGQL +
Sbjct: 358 IAAACGQLAAEE 369
>gi|298384050|ref|ZP_06993611.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14]
gi|298263654|gb|EFI06517.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14]
Length = 345
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 195/368 (52%), Gaps = 29/368 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ K L+GM EL+ + ++G+P QI W+Y + + M+++S + R
Sbjct: 1 MMSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL Q++ + V+E S DGT K+L G +E+VYIP+ R TLC+SSQV
Sbjct: 57 LLKQNYEVGAEAPVEEMRSVDGTVKYLYPV-----GENHFVESVYIPDDERATLCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q NLTA +I+ Q+ K++N+
Sbjct: 112 GCKMNCKFCMTGKQGYSANLTAHQIINQI-------------------HSLPERDKLTNV 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N + V K+L I + S G ++S +RIT+ST G + R EE LAIS
Sbjct: 153 VMMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAIS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L
Sbjct: 213 LHSPVTAQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKEL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K+L+G+ +INLI F+ PG +D + F + + G + IR RG DI AAC
Sbjct: 272 LKLLRGLDCRINLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAAC 331
Query: 363 GQLKSLSK 370
G L + +
Sbjct: 332 GMLSTAKQ 339
>gi|302525208|ref|ZP_07277550.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
AA4]
gi|302434103|gb|EFL05919.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
AA4]
Length = 368
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 116/368 (31%), Positives = 179/368 (48%), Gaps = 24/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E EA++++G R Q+ + R D M+DI R L
Sbjct: 18 RHLADLTVAERAEAVVELG----EKAFRAKQLSNHYFSRLTVDPAEMTDIPAASREKLVA 73
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
V + G + L +E+V + R TLC+SSQ GC +
Sbjct: 74 DLMPPLLTEVRALAADGGATRKTL----WRAHDGTLLESVLMRYPDRATLCISSQAGCGM 129
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV A +++ D +P ++SNIV MG
Sbjct: 130 ACPFCATGQGGLDRNLSTAEIVDQVRDAAAVMRD---------GSMPGGPGRLSNIVFMG 180
Query: 187 MGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ V ++ +D GL +R +T+ST G P I ++ +E + V LA+SL
Sbjct: 181 MGEPLANYKRVVAAVRRITDPSPAGLGIGQRSVTVSTVGLAPAIRKLADEKMQVRLAVSL 240
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ ++ ++ A R+Y ++ RR++ EY +++ IND P A L
Sbjct: 241 HTPDDELRDTLVPVNNRWSVDEVLSAARYYAD-TSGRRVSIEYALIRDINDQPWRAELLA 299
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L+ +N+IP NP PG ++ S + F + G + +R RG DI A
Sbjct: 300 KRLRKHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRLVNAGGVACTVRDTRGQDIAA 359
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 360 ACGQLAAE 367
>gi|78184186|ref|YP_376621.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
CC9902]
gi|123743556|sp|Q3AZA0|RLMN_SYNS9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78168480|gb|ABB25577.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 351
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 187/372 (50%), Gaps = 37/372 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL- 64
K L+G ELE+ + G H R QI W+Y +G++ +S + ++ R L
Sbjct: 2 KNVLLGRSAAELEDWAVAQG----HKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELE 57
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q F + ++V + ++ D T K LL IETV IP R T+C+SSQVGC
Sbjct: 58 AQTFRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCISSQVGC 112
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG L R+L EI+ QVL R + R+ S++V
Sbjct: 113 PMACRFCATGKSGLQRSLATHEIVDQVLSVREAMD-----------------RRPSHVVF 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGV 237
MGMGEPL N + V +++ + +G+ +RRIT+ST G + ++ E
Sbjct: 156 MGMGEPLLNSEAVLETIRCLNTDLGIG--QRRITVSTVGVPKTLPQLAELAMEKLGRAQF 213
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLHA + LR L+P YP + L+D CRHY L+ RR++FEY++L +ND P
Sbjct: 214 TLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLT-GRRVSFEYILLGELNDHPE 272
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A L + G + +NLI +NP E+ + I F ++R G + +R RGLD
Sbjct: 273 HAAELADRVGGFQSHVNLIAYNPIEEEEFKRPTSQRIEAFRRVLERRGVAVSLRASRGLD 332
Query: 358 ILAACGQLKSLS 369
AACGQL+
Sbjct: 333 QNAACGQLRRQH 344
>gi|283782458|ref|YP_003373213.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
gi|283440911|gb|ADB19353.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
Length = 391
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 136/371 (36%), Positives = 202/371 (54%), Gaps = 36/371 (9%)
Query: 8 SLIGMMR----------EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS 57
L+G R EL+ L + G P R +Q+ KW++ G F M+D+
Sbjct: 27 DLLGKTRMKHLAEPSVWNELKTWLTERGYPA----YRATQVRKWVFELGASSFDEMTDLP 82
Query: 58 QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
+++R L F++ ++V + S DGT K L+ +P G IE V + + R ++C
Sbjct: 83 KKLRDELAPEFTLWTGKVVTKSESPDGTEKLLVEYP-----GGGRIECVLLRDGDRRSIC 137
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VSSQVGC++ C FC +G + RNLTA EI+ Q+LL + LL +
Sbjct: 138 VSSQVGCAMGCVFCASGLDGVDRNLTAGEIVEQMLLLQRLLPE---------------KE 182
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIG 236
++S+IVMMGMGEPL N D+V ++L A+ GL S RRIT+ST G + ++ E
Sbjct: 183 RLSHIVMMGMGEPLANIDHVLEALGEATREDGLGISPRRITISTVGLPAALDKLCNLEAK 242
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LA+SLHA +N+LR LVPIN+ +E +I++ Y ++ RR+TFEYV+L G+ND P
Sbjct: 243 YHLAVSLHAPNNELRTRLVPINKAIGIEKVIESADRYFE-TSGRRLTFEYVLLAGVNDHP 301
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L ++L G A +N+IP+NP G Y I F + +G + R +G
Sbjct: 302 DHAQELAELLAGRTAMLNVIPYNPVAGLPYKTPSGNAIHRFRNILVDAGINVKFRQRKGS 361
Query: 357 DILAACGQLKS 367
+I AACGQL+
Sbjct: 362 EINAACGQLRR 372
>gi|86150562|ref|ZP_01068786.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86154131|ref|ZP_01072330.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597741|ref|ZP_01100974.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
84-25]
gi|85839014|gb|EAQ56279.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85842371|gb|EAQ59587.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88190045|gb|EAQ94021.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
84-25]
gi|284926904|gb|ADC29256.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315929674|gb|EFV08851.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
305]
Length = 356
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 137/377 (36%), Positives = 201/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S DG+ K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|294783089|ref|ZP_06748413.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
gi|294479967|gb|EFG27744.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
Length = 358
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 128/378 (33%), Positives = 202/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + IR+F M+++S +
Sbjct: 1 MNN-EKVNILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L ++ I + ++ ++S D T K+L + G +E + + R T
Sbjct: 56 REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDK---GTIETVLLRHRDSKNKEIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL QV L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG V I + + E+
Sbjct: 159 DESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SEVDANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|89895437|ref|YP_518924.1| hypothetical protein DSY2691 [Desulfitobacterium hafniense Y51]
gi|123279892|sp|Q24U12|RLMN_DESHY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|89334885|dbj|BAE84480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 357
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 127/371 (34%), Positives = 201/371 (54%), Gaps = 19/371 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K+ + + EL + ++G+P + R Q+++W+ + +++++ + +I
Sbjct: 1 MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELKNIGAGD 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + V E+IS DGTRK+L R V ++ + R T+CVS+
Sbjct: 57 RQKLQDGLFLQPLRKVREQISQDGTRKFLFRCADGETLECVLMDYDRRKNRDRHTVCVST 116
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q+GC++ C+FC TG RNL+ EIL QVL L+ +++
Sbjct: 117 QIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQ------------EDPDFQVT 164
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N++ V K++ + +D G RR+T+STSG P I ++ ++ V L
Sbjct: 165 NIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDNPQVGL 224
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ N R+ L+P+NRKYPLE L++ACR Y L+N RITFE ++ G + A
Sbjct: 225 AVSLHSAHNTTRDQLIPMNRKYPLEELMEACRDYTTLTNR-RITFEIALISGQ-ATLEAA 282
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ +LK A +NLIP NP G K++ F++C++ G +R +G DI
Sbjct: 283 QAVGHLLKRQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQCLESMGIPVSVREEKGTDID 342
Query: 360 AACGQLKSLSK 370
AACGQL+ +
Sbjct: 343 AACGQLRRQLE 353
>gi|193215236|ref|YP_001996435.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC
35110]
gi|254807164|sp|B3QS43|RLMN_CHLT3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|193088713|gb|ACF13988.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC
35110]
Length = 369
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 142/383 (37%), Positives = 191/383 (49%), Gaps = 28/383 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + K + + E L + G P R QI+ WIY G+ DF M ++S
Sbjct: 1 MNEV-KHDIKALSLEALMALINSYGQPA----FRAKQIFHWIYAHGVTDFAQMKNLSASF 55
Query: 61 RHLLNQHFSIIYPEI----VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
+ LL+QHF++ + V +I+ + T K+L R V I + SR TL
Sbjct: 56 QTLLSQHFTVSSIQPHADTVSHEITPEQTVKFLFRLSDEQSIESVFIPS---DSTSRNTL 112
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+SSQVGC+ C FC TG +RNLT EIL QVL LGD G
Sbjct: 113 CISSQVGCAFACKFCATGYMGFIRNLTIGEILDQVLWVNRWLGD-------------QRG 159
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSM-GLSFSKRRITLSTSGFVPNIARVGEE- 234
KI+N+V MGMGEPL NFDN ++ I ++ S R+IT+ST GF+P I R+ +
Sbjct: 160 GKITNVVFMGMGEPLANFDNCLAAIRILTNPDYAFQISTRKITVSTVGFIPGIQRLIDTG 219
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I LAISLH+ +R L+PI ++Y L L Y + + ITFEY ++ IND
Sbjct: 220 INCKLAISLHSAHQAIREELIPIAKEYSLATLKAILTRY-NQAYKQPITFEYSLIHKIND 278
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
S +DA+ L K KGI KINLI +N +YL S + F G + +R R
Sbjct: 279 SEQDAILLSKFCKGINCKINLIDYNSVDNIDYLPSPEGHKQAFIRKCIEHGLTVTVRKSR 338
Query: 355 GLDILAACGQLKSLSKRIPKVPR 377
G DI AACGQL K +
Sbjct: 339 GADIQAACGQLAIQHVHGKKFSK 361
>gi|325067056|ref|ZP_08125729.1| ribosomal RNA large subunit methyltransferase N [Actinomyces oris
K20]
Length = 370
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 123/377 (32%), Positives = 174/377 (46%), Gaps = 26/377 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + A G+P R Q+ + + RD M+D+ R L
Sbjct: 11 RHLADLDLSGRKAACKDSGLP----SFRADQLSRHYFTHFTRDSADMTDLPAAQREQLCA 66
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + T K L V +E+V + K R TLCVSSQ GC
Sbjct: 67 ELLPELITPVRALRADGGRTIKHLWELH-----DGVRVESVLMRYKERTTLCVSSQAGCG 121
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A + ++SN+V M
Sbjct: 122 MACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNVVFM 172
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEP+ N+ NV +L D G S R IT+ST G VP I R+ E V LA+S
Sbjct: 173 GMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVS 232
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ L+P+N K+ + L+DA Y L+ RR++ EY ++K +ND A L
Sbjct: 233 LHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRAQLL 291
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L A +N IP NP PG + CS+ F + ++R+G ++ +R RG DI
Sbjct: 292 ADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDID 351
Query: 360 AACGQLKSLSKRIPKVP 376
ACGQL + +V
Sbjct: 352 GACGQLATEVLNQERVK 368
>gi|326771755|ref|ZP_08231040.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505]
gi|326637888|gb|EGE38789.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505]
Length = 420
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 123/377 (32%), Positives = 174/377 (46%), Gaps = 26/377 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + A G+P R Q+ + + RD M+D+ R L
Sbjct: 61 RHLADLDLSGRKAACKDSGLP----SFRADQLSRHYFTHFTRDSADMTDLPAAQREQLCA 116
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + T K L V +E+V + K R TLCVSSQ GC
Sbjct: 117 ELLPELITPVRALRADGGRTIKHLWELH-----DGVRVESVLMRYKERTTLCVSSQAGCG 171
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A + ++SN+V M
Sbjct: 172 MACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNVVFM 222
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEP+ N+ NV +L D G S R IT+ST G VP I R+ E V LA+S
Sbjct: 223 GMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVS 282
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ L+P+N K+ + L+DA Y L+ RR++ EY ++K +ND A L
Sbjct: 283 LHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRAQLL 341
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L A +N IP NP PG + CS+ F + ++R+G ++ +R RG DI
Sbjct: 342 ADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDID 401
Query: 360 AACGQLKSLSKRIPKVP 376
ACGQL + +V
Sbjct: 402 GACGQLATEVLNQERVK 418
>gi|312143909|ref|YP_003995355.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus']
gi|311904560|gb|ADQ15001.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus']
Length = 347
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 133/364 (36%), Positives = 197/364 (54%), Gaps = 20/364 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L + R EL + L G P R Q++ W+Y GI + + M +I E++ LN
Sbjct: 2 KDLKELKRNELIKELKNAGFPA----YRGEQVFNWLYKNGISETEKMKNIPGELKEYLND 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++ I + + + DGT K+L V + PE +R + C+S+QVGC L
Sbjct: 58 NYEITDLKEKAKSQAADGTIKYLWELKDGENIEGVYLP---FPESARHSACISTQVGCGL 114
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG L RNLT EI+ QVL ++ + E ++SNIV MG
Sbjct: 115 GCSFCATGINGLERNLTTAEIIDQVLKIQADISRDEFAEP-----------RLSNIVFMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL NF+N+ +++ I + GL+ R++T+ST G VP I ++ + + LA+SLHA
Sbjct: 164 MGEPLANFENLMQAVEIINSDNGLNIGMRKMTISTVGLVPEIKKLADRNDQIGLAVSLHA 223
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ LRN ++PIN+KY L L+ A Y + RR+TFEYV++ +NDSP A+ L+++
Sbjct: 224 PNDRLRNKIMPINKKYNLNQLLTAVIDYIEKT-GRRVTFEYVLMDSVNDSPELAVQLVEL 282
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GI +NLIP NP P QK I +F + +G +R G I AACGQL
Sbjct: 283 LRGINCHVNLIPANPVPELNIKKPVQKVIDSFYSTLDNNGIQVSLRREMGSQIDAACGQL 342
Query: 366 KSLS 369
K
Sbjct: 343 KRQE 346
>gi|256544909|ref|ZP_05472280.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170]
gi|256399408|gb|EEU13014.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170]
Length = 343
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 120/371 (32%), Positives = 193/371 (52%), Gaps = 30/371 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ K+++ +ELEE +G + R Q+++ I+V I DF M+D+S+++R
Sbjct: 1 MIMKQTINDKTIKELEEIFKNLGF----QKFRAKQVFRQIHVNKINDFSKMTDLSKDMRK 56
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L+Q +I+ E S D T+K+L IE V++ +R T+C+SSQ
Sbjct: 57 KLDQILYFPKIKILKEFKSNLDKTKKYLFEL-----DDGNIIEAVFMEYDNRNTICISSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C+FC + L R+L A EI+ ++ L D I+N
Sbjct: 112 VGCKMGCNFCASTKNGLERSLLASEIIEEIYLLERENSD------------------INN 153
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
IV+MG+GEPL NF N++K + I +D G + S R IT+ST G V I ++ + + LA
Sbjct: 154 IVVMGIGEPLDNFSNIEKFIKIITDDNGRNLSHRAITISTVGLVDKIYKLADLGYDINLA 213
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH + R +P +KY ++ ++ AC +Y + RI++EYV++ G+N+ D
Sbjct: 214 VSLHYAFDKKRMEYMPSAKKYKIKDIVKACDYYFEKTKR-RISYEYVVIDGVNNLKEDID 272
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K+ KG INLIP NP +Y + + F + + G ++ IR G DI A
Sbjct: 273 KLEKLFKGKNIHINLIPLNPIEEFKYSKTKSNVMDQFQKKLSTRGLNATIRRSMGSDIDA 332
Query: 361 ACGQLKSLSKR 371
+CGQL++ R
Sbjct: 333 SCGQLRNNYAR 343
>gi|157736328|ref|YP_001489011.1| hypothetical protein Abu_0057 [Arcobacter butzleri RM4018]
gi|205829660|sp|A8EQW8|RLMN_ARCB4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157698182|gb|ABV66342.1| conserved hypothetical protein, radical SAM enzyme, Cfr family
[Arcobacter butzleri RM4018]
Length = 360
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 131/378 (34%), Positives = 201/378 (53%), Gaps = 35/378 (9%)
Query: 4 LKK---ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ K S+ +EL+E L R Q++ W+Y + + M ++ +E+
Sbjct: 1 MAKEALPSIYDYTLDELKEILK--------PSFRAKQVYNWLYKKYASSYDEMKNLPKEL 52
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR--------CIGGPVEIETVYIPEKS 112
L +++ I +IV ++ S DG+ K+L + + E I
Sbjct: 53 VEDLKENYPIDIMQIVKKEQSRDGSIKYLFKLRDNHTVEAVLLLMKDKKIDEDGQIVRSE 112
Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
+ T+C+SSQVGC + CSFC T VRNLT E + Q++ +
Sbjct: 113 KYTVCISSQVGCKVGCSFCLTAKGGFVRNLTVGEYIAQIVNIKRD--------------N 158
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
K NIV MGMGEPL NFDN K++ I S+ GL+ S+RR T+STSG I ++G
Sbjct: 159 DIAENKALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQTVSTSGIATKIKKLG 218
Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
E ++ + LAISLHAV ++LR+ L+P+N+ Y + +I A + +P + +++ FEY+++K
Sbjct: 219 EKDLQIQLAISLHAVDDELRSELIPMNKAYNIASIIQAVKAFP-VDTRKKVMFEYLVIKD 277
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
NDS A L+ +L GI AK+NLI FNP+PG Y +KD++ F + + + G IR
Sbjct: 278 KNDSIEAAKKLVSLLNGIQAKVNLIYFNPYPGTSYQRPQEKDMLKFKDFLNQKGVICTIR 337
Query: 352 TPRGLDILAACGQLKSLS 369
+GLDI AACGQLK
Sbjct: 338 ESKGLDISAACGQLKEKE 355
>gi|86152381|ref|ZP_01070591.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
260.94]
gi|315125097|ref|YP_004067101.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85840678|gb|EAQ57930.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
260.94]
gi|315018819|gb|ADT66912.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 356
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 138/377 (36%), Positives = 201/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S DG+ K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R+I NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRI-NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|288927891|ref|ZP_06421738.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str.
F0108]
gi|288330725|gb|EFC69309.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str.
F0108]
Length = 351
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 29/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+G +EL+ + G+P Q+ W+Y + + + M++IS+ R L
Sbjct: 5 KIPLLGHTLDELKAIAIDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKSNREKLA 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q + I + +D + S DGT K+L + +ETVYIP++ R TLCVS QVGC
Sbjct: 61 QRYEIGAAKFIDAQYSKDGTIKYLFPTES-----GKFVETVYIPDRDRATLCVSCQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLTA++IL Q+ +K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTAKDILNQIYAL-------------------PERQKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
G GEP+ N DNV K I + G ++S +RIT+S+ G + R +E +AIS+H
Sbjct: 157 GQGEPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ R ++P + +E +++ + Y ++ RR++FEY+M G+ND+P A L+K+
Sbjct: 217 PIPEQRASIMPAEKGLSIEEIVELLKQY-DFTHQRRLSFEYIMFGGLNDTPLHARQLVKL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++G+ ++NLI F+ P SD+K + TF + + G + IR RG DI AACG L
Sbjct: 276 VEGLDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLL 335
Query: 366 KSLSK 370
+ K
Sbjct: 336 STAKK 340
>gi|299141914|ref|ZP_07035049.1| radical SAM enzyme, Cfr family [Prevotella oris C735]
gi|298576765|gb|EFI48636.1| radical SAM enzyme, Cfr family [Prevotella oris C735]
Length = 348
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 129/375 (34%), Positives = 201/375 (53%), Gaps = 30/375 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K++L+GM EL+EA ++G+P QI KW+Y ++ M++IS+ R L
Sbjct: 4 SKKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ ++I E ++ ++S DGT K+L + +ETVYIPE R TLCVS QVGC
Sbjct: 60 EEAYTIGCAEALEAQLSKDGTIKYLFPTAS-----GKFVETVYIPENDRATLCVSCQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG Q +LT +IL Q+ K++NIV
Sbjct: 115 KMNCLFCQTGKQGFEGSLTTCDILNQIYSL-------------------PEVDKLTNIVF 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MG GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +AISLH
Sbjct: 156 MGQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + R L+P + + +++ R+Y S+ RR++FEY++ G+NDS A L+K
Sbjct: 216 SPIAEQRAELMPAQKGMSIAEIVELLRNY-DFSHQRRLSFEYIVFGGVNDSMTHARELVK 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +INLI F+ P +D+K + + + G + IR RG DI AACG
Sbjct: 275 LLKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGL 334
Query: 365 LKSLSKRIPKVPRQE 379
L S SK+I ++ ++
Sbjct: 335 L-STSKKIGEIRHEQ 348
>gi|294646654|ref|ZP_06724280.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a]
gi|292637993|gb|EFF56385.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a]
Length = 382
Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats.
Identities = 130/370 (35%), Positives = 197/370 (53%), Gaps = 29/370 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ ++G+P QI W+Y + + M+++S + R L
Sbjct: 39 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 94
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q++ + VDE S DGT K+L + G +E+VYIP+ R TLCVSSQVG
Sbjct: 95 LKQNYEVGAEAPVDEMRSVDGTVKYLYKV-----GENHFVESVYIPDDDRATLCVSSQVG 149
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 150 CKMNCKFCMTGKQGYTANLTASQIMNQI-------------------HSLPERDKLTNVV 190
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL
Sbjct: 191 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 250
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 251 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 309
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG
Sbjct: 310 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 369
Query: 364 QLKSLSKRIP 373
L + +
Sbjct: 370 MLSTAKQEKN 379
>gi|25028463|ref|NP_738517.1| hypothetical protein CE1907 [Corynebacterium efficiens YS-314]
gi|81749328|sp|Q8FP78|RLMN_COREF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|23493748|dbj|BAC18717.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 369
Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats.
Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 31/378 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + E+ EAL ++G+P + R +QI + Y R D M+D+ + R
Sbjct: 16 MPPAHFADLSDEQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAK 71
Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ E + + D +K L + +E+V + R TLC+SSQ
Sbjct: 72 VKDALFPTLMEPIRVVEADDENTQKTLWKLH-----DGTLLESVLMRYPDRATLCISSQA 126
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A + + + G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSVGEIVDQVRNAAATM--------------QAEGGRLSNI 172
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEPL N+ V ++ G S+R +T+ST G P I ++ +E + V L
Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTL 232
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND A
Sbjct: 233 AVSLHTPDDELRDELVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQGWRA 291
Query: 300 LNLI-KILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K+ K + +NLIP NP PG ++ S ++ F + G +R +G
Sbjct: 292 DMLGQKLHKALGSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQ 351
Query: 357 DILAACGQLKSLSKRIPK 374
+I AACGQL + K
Sbjct: 352 EIAAACGQLAAEENSEEK 369
>gi|257055048|ref|YP_003132880.1| ribosomal RNA large subunit methyltransferase N [Saccharomonospora
viridis DSM 43017]
gi|256584920|gb|ACU96053.1| radical SAM enzyme, Cfr family [Saccharomonospora viridis DSM
43017]
Length = 370
Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats.
Identities = 117/371 (31%), Positives = 179/371 (48%), Gaps = 19/371 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
L + L + E EA++ +G R Q+ + R D + M+DI R
Sbjct: 12 LPRRHLADLTVTERAEAVVALG----EKPFRAKQLSHHYFSRLTVDPEAMTDIPAASRRR 67
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L V G+ + L +E+V + R TLC+SSQ G
Sbjct: 68 LVDELMPPLLTQVRAVDCDGGSTRKTL----WRAHDGTLVESVLMRYPDRATLCISSQAG 123
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A +++ D G ++SNIV
Sbjct: 124 CGMACPFCATGQGGLTRNLSTAEIVDQVRAAAAVMRDGLMP----GPDGAPKPGRLSNIV 179
Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V ++ +D GL S+R +T+ST G P I ++ +E V LA
Sbjct: 180 FMGMGEPLANYKRVLAAVRRITDPPPAGLGISQRSVTVSTVGLAPAIRKLADEGLQVRLA 239
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ ++ ++ A R+Y + RR++ EY +++ IND P A
Sbjct: 240 VSLHTPDDELRDELVPVNNRWSVDEVLRAARYYADRT-GRRVSIEYALIRDINDQPWRAD 298
Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K L+ +N+IP NP PG ++ S + F + G + +R RG +
Sbjct: 299 LLAKRLREHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNAGGVACTVRDTRGQE 358
Query: 358 ILAACGQLKSL 368
I AACGQL +
Sbjct: 359 IAAACGQLAAE 369
>gi|121612139|ref|YP_001001357.1| radical SAM protein [Campylobacter jejuni subsp. jejuni 81-176]
gi|167006246|ref|ZP_02272004.1| radical SAM enzyme, Cfr family protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|205829695|sp|A1W1W6|RLMN_CAMJJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|87249061|gb|EAQ72023.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
81-176]
Length = 356
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 136/377 (36%), Positives = 200/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S DG+ K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKKEKINTEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+ EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSTGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|312879541|ref|ZP_07739341.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM
12260]
gi|310782832|gb|EFQ23230.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM
12260]
Length = 635
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 129/363 (35%), Positives = 185/363 (50%), Gaps = 30/363 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ E E L ++G P R R QI KWIY + + F+ M+D+S E+R L +S
Sbjct: 6 LDWSYETWVERLAELGQP----RFRADQICKWIYRKRVFRFEDMTDLSLELREKLQALWS 61
Query: 70 IIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
PE+ E++S TRK L R G +E+V + ++ R T C+S+QVGC L C
Sbjct: 62 CGIPEVAAEQVSRKDGTRKLLWRL-----GDGQSVESVLLDQEGRRTACISTQVGCPLGC 116
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+FC TG VRNL+ EI+ Q L + G+ + +V MGMG
Sbjct: 117 AFCATGQSGFVRNLSPGEIVGQFLGMEARYGE------------------LQGLVTMGMG 158
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N D V +L R ITLST G VP I + GV LA+SLHA +
Sbjct: 159 EPLLNADAVFLALGALKHPKMRGLGVRHITLSTCGVVPGIRALAASGLGVRLAVSLHAAN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+ LR+ LVP+N +YPL L +A Y ++ RI+ EY + +G+ND P A L + L+
Sbjct: 219 DALRDRLVPLNAQYPLAELREALVDYQEVT-RDRISIEYALFEGVNDDPSQARQLGEYLR 277
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G+ +NLIP N Y + + F +++ G+ + +R RG DI AACGQL+
Sbjct: 278 GLSVFVNLIPGNRSLEDAYRRPPRYRVEQFQGILEQQGFETAVRVERGSDIDAACGQLRQ 337
Query: 368 LSK 370
+
Sbjct: 338 RVE 340
>gi|116071168|ref|ZP_01468437.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107]
gi|116066573|gb|EAU72330.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107]
Length = 348
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 128/379 (33%), Positives = 189/379 (49%), Gaps = 41/379 (10%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + L+G ELE+ + G H R QI W+Y +G++ ++ + ++
Sbjct: 1 MNNV----LLGRSAAELEDWAIAQG----HKSFRGRQIHDWLYNKGVKSLSEITALPKQW 52
Query: 61 RHLLN-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R L Q F + ++V + ++ D T K LL IETV IP R T+C+S
Sbjct: 53 RTELEDQTFRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCIS 107
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + C FC TG L R+L EI+ QVL R + R+
Sbjct: 108 SQVGCPMACRFCATGKSGLQRSLATHEIVDQVLSVREAMD-----------------RRP 150
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------ 233
S+IV MGMGEPL N V +++ + +G+ +RRIT+ST G + ++ E
Sbjct: 151 SHIVFMGMGEPLLNSAAVLETIRCLNTDLGIG--QRRITVSTVGVPKTLPQLAELAMEKL 208
Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
LA+SLHA + LR L+P YP + L+D CRHY L+ RR++FEY++L +
Sbjct: 209 GRAQFTLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLT-GRRVSFEYILLGEL 267
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
ND P A L + G + +NLI +NP E+ + I F ++R G + +R
Sbjct: 268 NDHPEHAAELADRVGGFQSHVNLIAYNPIEEEEFKRPTTQRIEAFRRVLERRGIAVSLRA 327
Query: 353 PRGLDILAACGQLKSLSKR 371
RGLD AACGQL+ +
Sbjct: 328 SRGLDQNAACGQLRRQHLK 346
>gi|307565075|ref|ZP_07627588.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A]
gi|307346244|gb|EFN91568.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A]
Length = 347
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 31/373 (8%)
Query: 1 MN--FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
MN ++K L+G EL++ +G+P QI +W+Y++ I+ M++IS+
Sbjct: 1 MNKTIIEKLPLLGKTLFELKQIAKDLGLPA----FAGKQIAEWLYIKHIKSIDEMTNISK 56
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
R L++ ++I +D + S DGT K+L +ETVYIP+ R TLCV
Sbjct: 57 ANREKLSKVYTIGCKAPIDAQYSKDGTIKYLFPTEEDKF-----VETVYIPDNDRATLCV 111
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC + C FC TG Q NL+ +IL Q+ K
Sbjct: 112 SSQVGCKMNCLFCQTGKQGFEGNLSVTDILNQIYSL-------------------PEREK 152
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
++NIV MG GEP+ N DNV ++ I + ++S +RIT+S+ G + R +E
Sbjct: 153 LTNIVFMGQGEPMNNIDNVLRTTEIMTAEYAYAWSPKRITVSSVGVKNKLKRFLDESQCQ 212
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+AIS+H+ + R L+P R ++ +I+ +Y S+ RR++FEY++ G NDS
Sbjct: 213 VAISMHSPLEEQRKELMPAERAMSIKEVINLLHNY-DFSHQRRLSFEYIVFGGKNDSLEH 271
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A +I ++KG+ ++NLI F+ P SD + F + + R G + IR RG DI
Sbjct: 272 AKAIINLVKGLECRVNLIRFHQIPNVPLKGSDISTMEHFRDYLTRHGVFTTIRASRGQDI 331
Query: 359 LAACGQLKSLSKR 371
AACG L + K+
Sbjct: 332 FAACGLLSTAKKK 344
>gi|186684082|ref|YP_001867278.1| ribosomal RNA large subunit methyltransferase N [Nostoc punctiforme
PCC 73102]
gi|205829792|sp|B2J6D0|RLMN_NOSP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|186466534|gb|ACC82335.1| radical SAM enzyme, Cfr family [Nostoc punctiforme PCC 73102]
Length = 364
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 188/365 (51%), Gaps = 29/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G EL + + G P R Q+ +WIY +G+R +S S++ R + +
Sbjct: 22 PPLLGASVAELSAWVQQQGQPA----YRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAE 77
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS---RGTLCVSSQVG 123
I + ++ DGT K+LLR I V I T + R T+CVS+QVG
Sbjct: 78 I-PIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQVG 136
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG RNL EI+ QVL + +++SN+V
Sbjct: 137 CPMACDFCATGKGGYKRNLARHEIIDQVLTVQEDF-----------------QQRVSNVV 179
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MG+GEPL N +NV +L + +G+ +R +T+ST G I + + + LA+S
Sbjct: 180 FMGLGEPLLNTENVLAALKSLNQDIGIG--QRSLTVSTVGIRDRIRQFAQNNLQITLAVS 237
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA + LR L+P R YPLE L+ CR Y ++ RR+TFEYV+L G+ND P AL L
Sbjct: 238 LHAPNQALREKLIPSARAYPLEELLAECREYVEIT-GRRVTFEYVLLAGVNDLPEHALEL 296
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K ++G + +NLIP+NP +Y ++ I F +K+ + +R RGL+ AAC
Sbjct: 297 SKCMRGFQSHVNLIPYNPIQEVDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLEADAAC 356
Query: 363 GQLKS 367
GQL++
Sbjct: 357 GQLRA 361
>gi|124515329|gb|EAY56839.1| putative radical SAM family protein [Leptospirillum rubarum]
Length = 379
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 144/362 (39%), Positives = 204/362 (56%), Gaps = 10/362 (2%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+ E L + R Q+ +WI+ + + +++ M ++ + R +
Sbjct: 4 KMPLLDHPLSEWPSLLSG---DRTVPAYRARQVAQWIFRQNVSEWERMKNLPGDDRRRWS 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + P + DEK S DGTRK LL G IE+V IP R TLCVSSQVGC
Sbjct: 61 DRWDLSLPIVRDEKRSRDGTRKLLLELS-----GGALIESVLIPRDDRATLCVSSQVGCG 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC T LVRNL+ EIL QV +A LL + P + + +++++V M
Sbjct: 116 IGCRFCRTAEMGLVRNLSVSEILGQVRVANRLLAEAPVRDMSKETDPTPFLSRVNHLVFM 175
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GMGEPL NFD++ +SL++ + G S RRIT+STSG I +G I V LA+SL
Sbjct: 176 GMGEPLANFDHLVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLS 235
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +LR L+PI+R +P+ ++ ACR YP L N +RITFEYV+L G+ND A L +
Sbjct: 236 APTEELRENLMPISRHHPIRSILSACRAYP-LRNRQRITFEYVLLGGVNDGEGQARELAR 294
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L +K+NLIPFNP+PG Y D+ + F E + G ++ +RT RG DIL ACGQ
Sbjct: 295 LLAPFRSKVNLIPFNPYPGSPYHRPDKDRVRRFQEILLAKGVTATLRTTRGEDILGACGQ 354
Query: 365 LK 366
L
Sbjct: 355 LA 356
>gi|304382166|ref|ZP_07364677.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973]
gi|304336764|gb|EFM02989.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973]
Length = 346
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 29/369 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+ L+GM + L E + +G+P Q+ KW+Y R + M+DIS+ R L
Sbjct: 4 EKKPLLGMTQVALTETAVALGMPA----FTGRQMAKWLYSRHVSSIAEMTDISKAHRERL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
H+ I VD + S DGT K+L IETVYIP+K R TLCVS QVGC
Sbjct: 60 GMHYCIGNHAPVDCQRSVDGTVKYLFPTL-----DGRCIETVYIPDKERATLCVSCQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG Q NLT +IL Q+ ++NIV
Sbjct: 115 KMNCLFCQTGKQGFEGNLTVCDILNQIYSL-------------------PERETLTNIVF 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R +E +A+S+H
Sbjct: 156 MGQGEPMDNLDNVLQATEILTAPYGYAWSPKRITVSSVGVRGRLKRFLDESECHVAVSMH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + R L+P R + + D R Y S+ RR++FEY++ G+ND+P A +I+
Sbjct: 216 SPFPEQRAQLMPAERSMSITEIADLLRQY-DFSHQRRLSFEYIVFGGLNDTPAHAKAIIR 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L+G+ ++NLI F+P P ++++ + F + + R G + IR RG DI AACG
Sbjct: 275 LLQGLDCRVNLITFHPIPNISLHGANRETMERFRDELTRHGVFTTIRASRGQDIFAACGL 334
Query: 365 LKSLSKRIP 373
L + ++
Sbjct: 335 LSTAKQKAD 343
>gi|57504577|ref|ZP_00370689.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
gi|57019472|gb|EAL56166.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
Length = 356
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 138/379 (36%), Positives = 202/379 (53%), Gaps = 32/379 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EELEE + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELINILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q + + V + S DG+ K+L V + +R
Sbjct: 53 ELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEGKRISHTRY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 SICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I S + GL+ S RR T+STSG I +GE
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSKRI 372
+GLDI AACGQLK +K +
Sbjct: 338 KGLDISAACGQLKERAKEL 356
>gi|153951816|ref|YP_001398992.1| radical SAM protein [Campylobacter jejuni subsp. doylei 269.97]
gi|205829694|sp|A7H662|RLMN_CAMJD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|152939262|gb|ABS44003.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. doylei
269.97]
Length = 356
Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats.
Identities = 137/377 (36%), Positives = 202/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S DG+ K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDTEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC +CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|229817667|ref|ZP_04447949.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
20098]
gi|229785456|gb|EEP21570.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
20098]
Length = 395
Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats.
Identities = 122/371 (32%), Positives = 182/371 (49%), Gaps = 26/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ M +E ++G+P + R Q+ Y + +D R
Sbjct: 44 VHFVDMSEDERIAKAKELGLP----KFRVKQLANHYYGHFDVNAAAFTDFPASKRDEAAS 99
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V +++ T K L R IE+V + +R TLC+SSQVGC
Sbjct: 100 VFFPELITEVTRQVADKGTTIKTLWRLFDGSH-----IESVLMRYPTRSTLCISSQVGCG 154
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++A EIL QV +A ++ D ++SNIV M
Sbjct: 155 MGCPFCATGQLGLTRNMSAGEILEQVRVAARMMQDGEVAGGPG---------RLSNIVFM 205
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ EE I V LA+S
Sbjct: 206 GMGEPMGNYRSVLSAVRQISALPPQGFGISARNITVSTVGVVPGIRKLTEEGIPVRLAVS 265
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA S++LR+ LVP+N+++ ++DA Y L+ RR++ EY +++GIND A L
Sbjct: 266 LHAPSDELRDELVPMNKRFNTTAVLDAAHDYW-LATKRRVSIEYALMRGINDQAEHARLL 324
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L A +N IP NP G ++ S +D F + + +G ++ +R RG DI
Sbjct: 325 AKRLNHYGDDWAHVNPIPLNPIEGSKWTASKPEDEKRFLDILHAAGITATLRDTRGQDID 384
Query: 360 AACGQLKSLSK 370
ACGQL + +
Sbjct: 385 GACGQLAAKER 395
>gi|281426132|ref|ZP_06257045.1| radical SAM enzyme, Cfr family [Prevotella oris F0302]
gi|281399708|gb|EFB30539.1| radical SAM enzyme, Cfr family [Prevotella oris F0302]
Length = 348
Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 200/375 (53%), Gaps = 30/375 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K++L+GM EL+EA ++G+P QI KW+Y ++ M++IS+ R L
Sbjct: 4 SKKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ ++I E ++ + S DGT K+L + +ETVYIPE R TLCVS QVGC
Sbjct: 60 EEAYTIGCAEALEAQHSKDGTIKYLFPTAS-----GKFVETVYIPENDRATLCVSCQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG Q +LT +IL Q+ K++NIV
Sbjct: 115 KMNCLFCQTGKQGFEGSLTTCDILNQIYSL-------------------PEVDKLTNIVF 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MG GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +AISLH
Sbjct: 156 MGQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + R L+P + + +++ R+Y S+ RR++FEY++ G+NDS A L++
Sbjct: 216 SPIAEQRAELMPAQKGMSIAEIVELLRNY-DFSHQRRLSFEYIVFGGVNDSMTHARELVR 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +INLI F+ P +D+K + + + G + IR RG DI AACG
Sbjct: 275 LLKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGL 334
Query: 365 LKSLSKRIPKVPRQE 379
L S SK+I ++ ++
Sbjct: 335 L-STSKKIGEIRHEQ 348
>gi|29349780|ref|NP_813283.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
thetaiotaomicron VPI-5482]
gi|253569856|ref|ZP_04847265.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
1_1_6]
gi|81442826|sp|Q89ZK5|RLMN_BACTN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|29341691|gb|AAO79477.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|251840237|gb|EES68319.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
1_1_6]
Length = 345
Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats.
Identities = 128/368 (34%), Positives = 195/368 (52%), Gaps = 29/368 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ K L+GM EL+ + ++G+P QI W+Y + + M+++S + R
Sbjct: 1 MMSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL Q++ + V+E S DGT K+L G +E+VYIP+ R TLC+SSQV
Sbjct: 57 LLKQNYEVGAEAPVEEMRSVDGTVKYLYPV-----GENHFVESVYIPDDERATLCISSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q NLTA +I+ Q+ K++N+
Sbjct: 112 GCKMNCKFCMTGKQGYSANLTAHQIINQI-------------------HSLPERDKLTNV 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
VMMGMGEPL N + V K+L I + S G ++S +RIT+ST G + R EE LAIS
Sbjct: 153 VMMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAIS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L
Sbjct: 213 LHSPVTAQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKEL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K+L+G+ ++NLI F+ PG +D + F + + G + IR RG DI AAC
Sbjct: 272 LKLLRGLDCRMNLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAAC 331
Query: 363 GQLKSLSK 370
G L + +
Sbjct: 332 GMLSTAKQ 339
>gi|296393255|ref|YP_003658139.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985]
gi|296180402|gb|ADG97308.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985]
Length = 368
Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats.
Identities = 123/372 (33%), Positives = 179/372 (48%), Gaps = 24/372 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + EL +A+ +G R Q+ + Y R D + M+D+ R
Sbjct: 15 MPPRHLADLSAGELRDAVAGLG----EKPFRAGQLARHYYTRLTVDPEAMTDVPAASRGA 70
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + F P++V + R ++ R +E+V + R TLCVSSQ G
Sbjct: 71 LAEAF---LPDLVTPARTMGCDRGETVKTLWRLH-DGSLVESVLMAYADRVTLCVSSQAG 126
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV LA D R +SNIV
Sbjct: 127 CGMACPFCATGQGGLTRNLSTAEIVEQVRLAALAARDGKLAGGA---------RHLSNIV 177
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V ++ G S+R + +ST G VP I R+ E V LA
Sbjct: 178 FMGMGEPLANYRRVLDAVRRITSPAPEGFGISQRSVVVSTVGLVPAIHRLANEGLSVTLA 237
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++LR+ LVP+N ++P+ ++ A + Y + RR++ EY +++ +ND P A
Sbjct: 238 VSLHAPDDELRDTLVPVNTRWPVAEVLAAAKGYAQQT-GRRVSVEYALIRDVNDQPWRAD 296
Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L +L A +NLIP NP PG E+ S + F ++ G S +R RG +
Sbjct: 297 LLGGLLHEALGSLAHVNLIPLNPTPGSEWDASPPEAQREFVRRVRAKGVSCTVRDTRGQE 356
Query: 358 ILAACGQLKSLS 369
I AACGQL S
Sbjct: 357 IAAACGQLAGSS 368
>gi|259507523|ref|ZP_05750423.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314]
gi|259164908|gb|EEW49462.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314]
Length = 354
Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats.
Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 31/378 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + E+ EAL ++G+P + R +QI + Y R D M+D+ + R
Sbjct: 1 MPPAHFADLSDEQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ E + + D +K L + +E+V + R TLC+SSQ
Sbjct: 57 VKDALFPTLMEPIRVVEADDENTQKTLWKLH-----DGTLLESVLMRYPDRATLCISSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A + + + G ++SNI
Sbjct: 112 GCGMACPFCATGQGGLDRNLSVGEIVDQVRNAAATM--------------QAEGGRLSNI 157
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEPL N+ V ++ G S+R +T+ST G P I ++ +E + V L
Sbjct: 158 VFMGMGEPLANYKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTL 217
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND A
Sbjct: 218 AVSLHTPDDELRDELVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQGWRA 276
Query: 300 LNLI-KILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K+ K + +NLIP NP PG ++ S ++ F + G +R +G
Sbjct: 277 DMLGQKLHKALGSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQ 336
Query: 357 DILAACGQLKSLSKRIPK 374
+I AACGQL + K
Sbjct: 337 EIAAACGQLAAEENSEEK 354
>gi|227504805|ref|ZP_03934854.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC
6940]
gi|227198655|gb|EEI78703.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC
6940]
Length = 372
Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats.
Identities = 116/373 (31%), Positives = 182/373 (48%), Gaps = 31/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + ++E L ++G+P + R +Q+ K YV D + M+DI R L +
Sbjct: 23 KHFADLTQDERIAVLAELGLP----KFRANQLAKHYYVHRTADVEEMTDIPANKRAELQE 78
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
E + + T K L R +E+V + R TLC+SSQ GC
Sbjct: 79 RLFPNLMEPIRQTSTDDGETTKSLWRLH-----DGTMLESVLMRYPGRATLCISSQAGCG 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q LA L+ D G +++N+V M
Sbjct: 134 MACPFCATGQGGLDRNLSTAEIVEQFRLAAKLMED--------------EGGRLTNVVFM 179
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V ++ D G S+R +T+ST G P I ++ +E LA+S
Sbjct: 180 GMGEPLANYKRVVHAVRQITGQDLEGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTLAVS 239
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++P+E ++DA R+Y S RR++ EY +++ ND A L
Sbjct: 240 LHTPDDELRDSLVPVNNRWPVEEVLDAARYYADKS-GRRVSIEYALIRDKNDQDFRADML 298
Query: 303 I-KILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K+ + + +N+IP NP PG E+ + + F + G +R +G +I
Sbjct: 299 GQKLHRALGSKVHVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGDEIA 358
Query: 360 AACGQLKSLSKRI 372
AACGQL + +
Sbjct: 359 AACGQLAADERES 371
>gi|16331844|ref|NP_442572.1| hypothetical protein sll0098 [Synechocystis sp. PCC 6803]
gi|3287936|sp|Q55880|RLMN_SYNY3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|1208474|dbj|BAA10642.1| sll0098 [Synechocystis sp. PCC 6803]
Length = 350
Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats.
Identities = 126/354 (35%), Positives = 184/354 (51%), Gaps = 31/354 (8%)
Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
+ + G P R QI +W+Y +G R M+D+ + R N H+ I I
Sbjct: 17 TDWVQTTGQPA----YRGKQIHQWLYQKGARSLTAMTDLPKVWREK-NVHYPIGRSVIDH 71
Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
++ D TRK+LLR + IETV IP R T+CVSSQVGC++ C+FC TG
Sbjct: 72 CAVAPDHTRKYLLRL-----ADGLIIETVGIPSSKRLTVCVSSQVGCAMDCNFCATGKGG 126
Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
+RNL + EI+ QVL + + ++SN+V MGMGEPL N V
Sbjct: 127 FIRNLESHEIVDQVLTVQEEFHE-----------------RVSNVVFMGMGEPLLNLPQV 169
Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVP 256
K++ + +G+ +R +T+ST G I ++ + V A+SLHA + LR L+P
Sbjct: 170 VKAVECLNQVVGIG--QRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIP 227
Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
R YPLE L+ CR Y + RR+TFEYV+L G+ND P A L + L+G +NLI
Sbjct: 228 SARHYPLEQLLADCRAYVE-TTGRRVTFEYVLLAGVNDQPVHAEELAQKLRGFQTHVNLI 286
Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
P+NP +Y + I F++ + + +R RG+ AACGQL++ K
Sbjct: 287 PYNPISEVDYQRPTEAQINQFAQVLSDHRIAVSVRYSRGVQADAACGQLRASRK 340
>gi|22299968|ref|NP_683215.1| hypothetical protein tll2425 [Thermosynechococcus elongatus BP-1]
gi|81742271|sp|Q8DG98|RLMN_THEEB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|22296153|dbj|BAC09977.1| tll2425 [Thermosynechococcus elongatus BP-1]
Length = 337
Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats.
Identities = 132/361 (36%), Positives = 184/361 (50%), Gaps = 31/361 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EL+ + G P R Q+ +W+Y +G R Q ++ ++ R L
Sbjct: 3 LLGRSAAELKAWVEAQGQPG----YRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV- 57
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I EI + DGT K LL IETV IP R T+CVSSQVGC + C
Sbjct: 58 EIGRSEIRYRHDAQDGTVKLLLAL-----ADGETIETVGIPSSDRLTVCVSSQVGCPMAC 112
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG RNL EIL QVL +S + GR++S++V MGMG
Sbjct: 113 DFCATGKGGYRRNLACHEILDQVLTIQSEM-----------------GRRVSHVVFMGMG 155
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N V ++++ + +G+ +R IT+ST G I R+ + LA+SLHA +
Sbjct: 156 EPLLNLPAVLQAITCLNRDIGIG--QRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPN 213
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P + YPL LI CR Y + RRITFEY +L G+ND P+ A L ++L+
Sbjct: 214 QALREQLIPSAKHYPLSQLIADCRAYVQQT-GRRITFEYTVLAGVNDRPQHAEELAQLLR 272
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G + +NLIP+NP Y + + F ++ G ++ IR RGLD AACGQL+
Sbjct: 273 GFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQ 332
Query: 368 L 368
Sbjct: 333 A 333
>gi|57236899|ref|YP_179852.1| radical SAM protein [Campylobacter jejuni RM1221]
gi|81557377|sp|Q5HS83|RLMN_CAMJR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|57165703|gb|AAW34482.1| radical SAM enzyme, Cfr family [Campylobacter jejuni RM1221]
gi|315059159|gb|ADT73488.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni S3]
Length = 356
Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats.
Identities = 138/377 (36%), Positives = 201/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S DG+ K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R+I NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRI-NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|269216514|ref|ZP_06160368.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122]
gi|269130043|gb|EEZ61125.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122]
Length = 345
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 189/364 (51%), Gaps = 28/364 (7%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
+ E A+ ++ +P R QI +W+Y +G + M+++S+ +R L
Sbjct: 5 KELSLAEAATAIKELDLPA----FRARQIAQWVYGKGAASYDEMTNLSRSLRERLAVELP 60
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+ P IVD +IS DGTRK+++ F E V +P +R T+C S+QVGC++ CS
Sbjct: 61 LYTPRIVDRQISQDGTRKYIVAFH-----DGASTEMVAMPYGNRLTVCFSTQVGCAMQCS 115
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG + RNL E++ Q++LA + G ++SN+V MG GE
Sbjct: 116 FCATGKEGFTRNLVPGEMVDQIILAEKDM-----------------GTRVSNVVSMGQGE 158
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
PL N +N+ +L I +D R I +ST G V I + +LA+SLH+
Sbjct: 159 PLLNLENLSAALEILNDPAYRGIGARHIVVSTCGIVQGIRAFADIGEQYVLAVSLHSAIQ 218
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ R++++P P++ LI+A + Y ++ R+TFEYV+++G+ND R LI I +
Sbjct: 219 ETRDMIMPRVANQPIDALIEAIQEYDRKTHR-RVTFEYVLIQGMNDDRRHIDALIDICRR 277
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ +NLI N + S +K + F + +K +G + IR RG DI ACGQLK+
Sbjct: 278 THSNVNLIELNEIEESPFRPSGRKVSLEFVKRLKSAGIEASIRDSRGSDIAGACGQLKNE 337
Query: 369 SKRI 372
R+
Sbjct: 338 RARL 341
>gi|282900428|ref|ZP_06308378.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
CS-505]
gi|281194741|gb|EFA69688.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
CS-505]
Length = 360
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 187/366 (51%), Gaps = 31/366 (8%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
G +EL + + G P R Q+ WIY G+ +S + R + SI
Sbjct: 22 GASVDELTTWVQQQGQPG----YRGKQLHNWIYHHGVHKISDISVFPKTWREQVADV-SI 76
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
I + + DGT K+LL+ IETV IP R T+CVS+QVGC + C F
Sbjct: 77 GRSSIDHQSFATDGTEKYLLQL-----ADGEIIETVGIPSDKRLTVCVSTQVGCPMACDF 131
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C TG RNL EI+ QVL + + +++S++V MGMGEP
Sbjct: 132 CATGKGGFKRNLNRGEIVDQVLTVQE-----------------NFQQRVSHVVFMGMGEP 174
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
L N +NV +L + +G+ +R +T+ST G I ++ E V LA+SLHA +
Sbjct: 175 LLNTENVILALKCLNQDLGIG--QRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQK 232
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR ++P + YP+E L+ CR Y ++ RR+TFEY++L G+ND P AL L + L+G
Sbjct: 233 LREQIIPSAKTYPIEQLLAECREYVEIT-GRRVTFEYILLAGVNDLPEQALELSQRLRGF 291
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+ +NLIP+NP +Y ++ I F +++ + IR RGL++ AACGQL+
Sbjct: 292 QSHVNLIPYNPIQEADYQRPNRDRIHAFVNILQQQKIAVSIRYSRGLEVDAACGQLRKRQ 351
Query: 370 KRIPKV 375
I +
Sbjct: 352 NVIKQK 357
>gi|218563299|ref|YP_002345079.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NCTC 11168]
gi|123042659|sp|Q0P7R8|RLMN_CAMJE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|112361006|emb|CAL35807.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|315926640|gb|EFV06020.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
Length = 356
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 136/377 (36%), Positives = 201/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L ++F + V + S DG+ K+L V + +R
Sbjct: 53 ELARNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|325860042|ref|ZP_08173169.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS
18C-A]
gi|325482568|gb|EGC85574.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS
18C-A]
Length = 353
Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 193/375 (51%), Gaps = 29/375 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+ R L
Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKANREKLA 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++I E D + S DGT K+L +ETVYIPE R TLCVSSQVGC
Sbjct: 61 AAYAIGCKEPTDAQYSKDGTVKYLFPT-----DSGKFVETVYIPEDGRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q +L+A +IL QV K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQVYSL-------------------PERDKLTNIVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
G GEP+ N DNV + I + G +S +RIT+S+ G + R EE +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHVAISMHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R+ L+P R +E ++D +Y S+ RR++FEY++ K +NDS A ++++
Sbjct: 217 PLHEQRSELMPAERGMSIESIVDLLGNY-DFSHQRRLSFEYIVFKDVNDSEAHAKAIVRL 275
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LKG+ +INLI F+P P D + + F + G + IR RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDQKMEEFRNYLTLHGVFTTIRASRGQDIFAACGLL 335
Query: 366 KSLSKRIPKVPRQEM 380
+ ++ + +M
Sbjct: 336 STAKEKEEWKGKSKM 350
>gi|78213579|ref|YP_382358.1| hypothetical protein Syncc9605_2063 [Synechococcus sp. CC9605]
gi|123729671|sp|Q3AHX9|RLMN_SYNSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78198038|gb|ABB35803.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 351
Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 180/368 (48%), Gaps = 37/368 (10%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+G EL++ + G R Q+ WIY +G R ++ + R L +
Sbjct: 5 LLGRSAAELQDWAVAQG----QKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALVEAG 60
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + V ++ D T K LL IETV IP R T+CVSSQVGC +
Sbjct: 61 VDVGRLKEVHHSVATDATTKLLLSTE-----DGETIETVGIPTDQRLTVCVSSQVGCPMA 115
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L R+L EI+ QVL R + R+ S+IV MGM
Sbjct: 116 CRFCATGKGGLQRSLQTHEIVDQVLSVREAMD-----------------RRPSHIVFMGM 158
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
GEPL N V +++ +D +G+ +RRIT+ST G + ++ E LA
Sbjct: 159 GEPLLNSSAVLEAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELAMQRLGRAQFTLA 216
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LR L+P YP + L++ CRHY ++ RR++FEY++L G+ND P A
Sbjct: 217 VSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVT-GRRVSFEYILLGGLNDQPEHAA 275
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L + G + +NLI +NP E+ + I F ++R G + +R RGLD A
Sbjct: 276 ELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEAFRRVLERRGVAVSLRASRGLDQNA 335
Query: 361 ACGQLKSL 368
ACGQL+
Sbjct: 336 ACGQLRRQ 343
>gi|332708170|ref|ZP_08428163.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L]
gi|332353072|gb|EGJ32619.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L]
Length = 351
Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats.
Identities = 127/362 (35%), Positives = 186/362 (51%), Gaps = 31/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G EL + + G P R Q+ WIY +G+R +S ++ R+ +
Sbjct: 16 PPLLGASLVELTSWIQEQGQPA----YRGRQLHGWIYEKGVRSLSEISVFPKQWRNTVAD 71
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I + + DGT K+LL+ IETV IP R T+CVSSQVGC +
Sbjct: 72 V-PIGRSRLHYRLEAKDGTVKYLLQLS-----DGQIIETVGIPTPKRLTVCVSSQVGCPM 125
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL EI+ QVL R + ++SN+V MG
Sbjct: 126 ACDFCATGKGGFTRNLARHEIVDQVLTVREDFQE-----------------RVSNVVFMG 168
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N + V ++ + +G+ R +T+ST G I ++ + V LA+SLHA
Sbjct: 169 MGEPLLNTEAVVGAVKSLNQDLGIG--ARSLTISTVGIPGRIRQLAQHQLQVTLAVSLHA 226
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR L+P + YPL+ L+D CR Y L++ R+TFEY++L G+ND A+ L K
Sbjct: 227 SNQQLREQLIPSAKHYPLKALLDECRDYVNLTSR-RVTFEYILLGGLNDCREHAVELAKN 285
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + +NLIP+NP +Y + + I F E +K+ + +R RGLD AACGQL
Sbjct: 286 LRGFQSHVNLIPYNPISEVDYQRPNYRRIQGFVEALKQQHIAVSVRHSRGLDKDAACGQL 345
Query: 366 KS 367
++
Sbjct: 346 RA 347
>gi|251770958|gb|EES51543.1| radical SAM family protein [Leptospirillum ferrodiazotrophum]
Length = 357
Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats.
Identities = 144/368 (39%), Positives = 192/368 (52%), Gaps = 23/368 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ- 66
+L+ E L K G P R Q+ W+Y R D + MS+I VR LL+
Sbjct: 2 NLLDHPPSTWGEILEKRGHPA----YRGRQVAHWVYQRLTTDPRKMSNIPPGVRDLLSSG 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
S+ P ++ S DGT K LR IE+V IP K + TLC+S+Q GC +
Sbjct: 58 TLSLDLPTVLSTAQSLDGTVKMALRLQ-----DGPVIESVLIPRKGQWTLCLSTQAGCGI 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC T + L RNL+ EIL Q LLA + P E I +IV MG
Sbjct: 113 GCRFCRTASMGLTRNLSTAEILSQWLLAARFVETLPPGES-----------HIDHIVFMG 161
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
MGEPL N + + ++ + G S RRIT+STSG VP I +GE GV LAISL A
Sbjct: 162 MGEPLANLEALIPAIRSLTHPDGAGLSPRRITVSTSGLVPRIDTLGEANTGVRLAISLCA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR ++P+ R Y +E ++ ACR +P L N RITFEYV+L G+NDSP A L ++
Sbjct: 222 PDDALRREIMPVGRIYSIEEILAACRRFP-LRNRDRITFEYVLLAGVNDSPLQARQLGRL 280
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L +K+NLIPFNP+PG Y + F E + ++ +R G D+LAACGQL
Sbjct: 281 LAPFRSKVNLIPFNPFPGSPYHRPTDSSVAAFQEVLAGFHITATVRKSMGPDVLAACGQL 340
Query: 366 KSLSKRIP 373
S+
Sbjct: 341 ARESQDHT 348
>gi|308234069|ref|ZP_07664806.1| 23S rRNA m(2)A-2503 methyltransferase [Atopobium vaginae DSM 15829]
gi|328943466|ref|ZP_08240931.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829]
gi|327491435|gb|EGF23209.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829]
Length = 416
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 191/372 (51%), Gaps = 28/372 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K + + ++L L +G P R QI W++ + R F M+++S+++R L
Sbjct: 72 QKVEIRSLNHDQLTYELTSMGEPA----FRVKQIEAWLWQKNARSFDDMTNLSKKLRARL 127
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F++ P +V +++S DG+RK+LLRF V E V +P K++ +CVS+Q GC
Sbjct: 128 KEKFALYSPALVSKQVSQDGSRKYLLRFQ-----DGVMAECVGMPTKNKLAICVSTQAGC 182
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC TG L R+LT EI Q L + ++++ V+
Sbjct: 183 AIGCVFCATGKAGLTRSLTGYEIYEQALFIQDDF-----------------QMRVASAVL 225
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MG GEPL N++ +L + + ++GL R +T+ST G +PNI + E LA+SL
Sbjct: 226 MGQGEPLTNYNASIFALKMMNSAIGLGVGARHLTISTCGILPNIIKFSHEKEQFTLAVSL 285
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R+ L+P +++ L+ L D Y + RR T+EY ++KG+ND+ + L
Sbjct: 286 HSAVQSTRDYLMPGVKRFNLQHLHDTMNLYVEAT-GRRPTYEYALIKGVNDTDEELAALC 344
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
G A +NLI N +L + +K F + +KR G + IR RG DI AACG
Sbjct: 345 DFCAGTLAHVNLIQLNKIDDSPFLPTSEKRAEHFVKTLKRFGVEATIRHSRGADIDAACG 404
Query: 364 QLKSLSKRIPKV 375
QLK +V
Sbjct: 405 QLKQKVVGKKRV 416
>gi|157415935|ref|YP_001483191.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
81116]
gi|205829693|sp|A8FP27|RLMN_CAMJ8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157386899|gb|ABV53214.1| hypothetical protein C8J_1617 [Campylobacter jejuni subsp. jejuni
81116]
gi|307748573|gb|ADN91843.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni M1]
gi|315931319|gb|EFV10288.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
327]
Length = 356
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 137/377 (36%), Positives = 199/377 (52%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + + +R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKYLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S DG+ K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPMKEEKIDAEGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV+LAISLHAV++ LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDGLRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK +K
Sbjct: 338 KGLDISAACGQLKERAK 354
>gi|269795650|ref|YP_003315105.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542]
gi|269097835|gb|ACZ22271.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542]
Length = 364
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 177/370 (47%), Gaps = 26/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ EE A+ ++G R Q+ + D Q M+D+ R +L
Sbjct: 12 RHFADLSPEERVAAVTELG----EKPFRAKQLATHYFSHLTADPQDMTDLPAGSRDVLTD 67
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + T K L + V++E+V + SR TLCVSSQ GC
Sbjct: 68 ALFPPLLTKVRTMEADGGTTVKTLWHLYDQ-----VKVESVLMRYTSRTTLCVSSQAGCG 122
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A L D IP +++N+V M
Sbjct: 123 MACPFCATGQLGLTRNLSTAEIVEQVRQAAKSLAD---------GEIPGGPTRLNNLVFM 173
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ A GL S R IT+ST G VP + ++ +E I V LA+S
Sbjct: 174 GMGEPLANYKAVIGTVRQAVAPAPDGLGMSARNITVSTVGLVPAMNKLAKEGIPVTLALS 233
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVPIN ++ ++ ++DA R Y + RR++ EY ++K +ND A L
Sbjct: 234 LHAPDDELRSDLVPINTRWSVDEVLDAARGYFDAT-GRRVSIEYALIKDMNDHAWRADLL 292
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L +N IP NP PG + S+Q F ++ G + IR RG DI
Sbjct: 293 GEKLTARGQGWVHVNPIPLNPTPGSIWTASEQDVEDEFVARLRGHGIPTTIRDTRGSDID 352
Query: 360 AACGQLKSLS 369
ACGQL +
Sbjct: 353 GACGQLAAEE 362
>gi|227488624|ref|ZP_03918940.1| possible Fe-S-cluster redox protein [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091518|gb|EEI26830.1| possible Fe-S-cluster redox protein [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 398
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 126/388 (32%), Positives = 190/388 (48%), Gaps = 32/388 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ + ++E E L ++G+P + R +QI + Y R D + M+D+ + VR
Sbjct: 19 SMPPKHYADYTKDERIEILKELGLP----KFRDNQIARHYYGRFEADPELMTDLPESVRT 74
Query: 63 LLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ + V E + D T+K L + +E+V + R TLC+SSQ
Sbjct: 75 TVGEKLFPQLMSPVRETSADDGKTQKMLWKLH-----DGTLLESVLMEYPDRATLCISSQ 129
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C FC TG L RNL+ EI+ QV A + + + G ++SN
Sbjct: 130 AGCGMACPFCATGQGGLDRNLSTGEIVDQVRAAAATM--------------QAKGGRLSN 175
Query: 182 IVMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
IV MGMGEPL N++ V ++ G S+R ITLST G P I R E
Sbjct: 176 IVFMGMGEPLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSCR 235
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLH ++LR+ LVP N ++ + ++DA R Y S RR++ EY +++ IND P
Sbjct: 236 LAVSLHTPDDELRDSLVPANNRWSIAEVLDAAREYAEAS-GRRVSIEYALIRDINDQPWR 294
Query: 299 ALNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A L K L G +NLIP NP PG ++ S ++ F + + G + +R RG
Sbjct: 295 ADLLGKKLHGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTRG 354
Query: 356 LDILAACGQLKSLSKRIPKVPRQEMQIT 383
+I AACGQL + +R R+ + T
Sbjct: 355 QEIAAACGQLAAE-ERTGAAARRAKEAT 381
>gi|305680861|ref|ZP_07403668.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii
ATCC 14266]
gi|305659066|gb|EFM48566.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii
ATCC 14266]
Length = 385
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 117/374 (31%), Positives = 186/374 (49%), Gaps = 31/374 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + + ++ AL +G+P + R +Q+ K Y R D + M+D+ VR
Sbjct: 33 MPPKHFADLTPDQRIAALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVRDA 88
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + V + + D T K L R +E+V + +R TLC+SSQ
Sbjct: 89 VAEALFPTLMTPVRQVTADDGETHKTLWRLH-----DGTLLESVLMRYPNRATLCISSQA 143
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A + + G ++SNI
Sbjct: 144 GCGMACPFCATGQAGLDRNLSTGEIIDQVRSAARTM--------------VAEGSRLSNI 189
Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N+ V ++ G S+R +T+ST G P I ++ +E V L
Sbjct: 190 VFMGMGEPLANYKRVVSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSVTL 249
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ + ++DA +Y S RR++ EY +++ IND A
Sbjct: 250 AVSLHTPDDELRDTLVPVNNRWSVAEVLDAAAYYADRS-GRRVSIEYALIRDINDQGWRA 308
Query: 300 LNLIK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K + K + A +NLIP NP PG ++ S ++ F + G + +R +G
Sbjct: 309 DLLGKKLHKALGSKAHVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTKGQ 368
Query: 357 DILAACGQLKSLSK 370
+I AACGQL + ++
Sbjct: 369 EIAAACGQLAAENR 382
>gi|282859577|ref|ZP_06268681.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010]
gi|282587628|gb|EFB92829.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010]
Length = 344
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 115/368 (31%), Positives = 193/368 (52%), Gaps = 29/368 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+G EL++ ++G+P Q+ +W+YV+ ++ M++IS+ R
Sbjct: 3 INKLPLLGKTLFELKQVAKELGLPA----FAGKQMAEWLYVKHVKSIDEMTNISKANREK 58
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++I +D + S DGT K+L +ETVYIP++ R TLCVSSQVG
Sbjct: 59 LESVYTIGCKAPIDAQHSQDGTIKYLFPTER-----GKFVETVYIPDEDRATLCVSSQVG 113
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q +L+A +IL Q+ K++NIV
Sbjct: 114 CKMNCLFCQTGKQGFEGSLSATDILNQIYSL-------------------PERDKLTNIV 154
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MG GEP+ N DNV ++ + + ++S +RIT+S+ G + R +E +AIS+
Sbjct: 155 FMGQGEPMDNLDNVLRTTELMTAEYAYAWSPKRITVSSVGLKSKLKRFLDESQCHVAISM 214
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ ++ R ++P + ++ ++D R+Y S+ RR++FEY++ G NDS A ++
Sbjct: 215 HSPLHEQREEIMPAEKGMRIQEVVDLLRNY-DFSHQRRLSFEYIVFGGKNDSMEYAKAIV 273
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++KG+ + NLI F+ P +D++ + F + + + G + IR RG DI AACG
Sbjct: 274 DLVKGLDCRFNLIRFHQIPNVPLKGADRETMEKFRDYLTKHGVFTTIRASRGQDIFAACG 333
Query: 364 QLKSLSKR 371
L + K+
Sbjct: 334 LLSTAKKQ 341
>gi|282876907|ref|ZP_06285759.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310]
gi|281300950|gb|EFA93267.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310]
Length = 343
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 30/370 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M KK+ L+GM EL+E +G+P Q+ KW+Y R + M+DIS+
Sbjct: 1 METGKKK-LLGMTLSELKEVAQALGMP----SFAGGQMAKWLYQRQVTSIGEMTDISKSN 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + + I +D + S DGT K+L + +ETV+IP+ R TLCVS
Sbjct: 56 RERLAEEYEIGCMAHIDAQYSKDGTIKYLFPTAS-----GKFVETVFIPDDDRATLCVSC 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG Q NLT +IL QV +++
Sbjct: 111 QVGCKMNCLFCQTGKQGFEGNLTYADILNQVYSL-------------------PERDRLT 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIV MG GEP+ N DNV + + + G ++S +RIT+S+ G + R +E +A
Sbjct: 152 NIVFMGQGEPMDNLDNVLRVTQVMTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVA 211
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH+ + R++L+P + P+E ++D R Y ++ RR++FEY++ G+ND+P A
Sbjct: 212 ISLHSALPEQRSMLMPAEKGMPIEQIVDLLRGY-DFAHQRRLSFEYIVFGGLNDTPMHAR 270
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+I +L G+ ++NLI F+ P +D++ + F + G + IR RG DI A
Sbjct: 271 RIIDLLHGLDCRVNLIRFHQIPNVPLKGADEQKMENFRNYLTSHGVFTTIRASRGQDIFA 330
Query: 361 ACGQLKSLSK 370
ACG L + K
Sbjct: 331 ACGLLSTAKK 340
>gi|225021120|ref|ZP_03710312.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii
ATCC 33806]
gi|224946120|gb|EEG27329.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii
ATCC 33806]
Length = 389
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 117/374 (31%), Positives = 186/374 (49%), Gaps = 31/374 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + + ++ AL +G+P + R +Q+ K Y R D + M+D+ VR
Sbjct: 37 MPPKHFADLTPDQRIAALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVRDA 92
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + V + + D T K L R +E+V + +R TLC+SSQ
Sbjct: 93 VAEALFPTLMTPVRQVTADDGETHKTLWRLH-----DGTLLESVLMRYPNRATLCISSQA 147
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A + + G ++SNI
Sbjct: 148 GCGMACPFCATGQAGLDRNLSTGEIIDQVRSAARTMA--------------AEGNRLSNI 193
Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N+ V ++ G S+R +T+ST G P I ++ +E V L
Sbjct: 194 VFMGMGEPLANYKRVVSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSVTL 253
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ + ++DA +Y S RR++ EY +++ IND A
Sbjct: 254 AVSLHTPDDELRDTLVPVNNRWSVAEVLDAAAYYADRS-GRRVSIEYALIRDINDQGWRA 312
Query: 300 LNLIK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K + K + A +NLIP NP PG ++ S ++ F + G + +R +G
Sbjct: 313 DLLGKKLHKALGSKAHVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTKGQ 372
Query: 357 DILAACGQLKSLSK 370
+I AACGQL + ++
Sbjct: 373 EIAAACGQLAAENR 386
>gi|160887188|ref|ZP_02068191.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483]
gi|156107599|gb|EDO09344.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483]
Length = 344
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 130/370 (35%), Positives = 197/370 (53%), Gaps = 29/370 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ ++G+P QI W+Y + + M+++S + R L
Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q++ + VDE S DGT K+L + G +E+VYIP+ R TLCVSSQVG
Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYKV-----GENHFVESVYIPDDDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDNLTSHGLFTTIRSSRGEDIFAACG 331
Query: 364 QLKSLSKRIP 373
L + +
Sbjct: 332 MLSTAKQEKN 341
>gi|256379897|ref|YP_003103557.1| ribosomal RNA large subunit methyltransferase N [Actinosynnema
mirum DSM 43827]
gi|255924200|gb|ACU39711.1| radical SAM enzyme, Cfr family [Actinosynnema mirum DSM 43827]
Length = 368
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 118/368 (32%), Positives = 177/368 (48%), Gaps = 24/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E+ EA+ +G R +Q+ + R D M+DI R L
Sbjct: 18 RHLADLTAEQRREAVASLG----EQPFRANQLSNHYFGRLTVDPDAMTDIPAAAREKLVG 73
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
V + GT + L +E+V + R TLC+SSQ GC +
Sbjct: 74 DLMPPLWTEVRSVEADAGTTRKTLL----RAHDGTLVESVLMRYPDRATLCISSQAGCGM 129
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV + + D ++P ++SNIV MG
Sbjct: 130 ACPFCATGQGGLQRNLSTAEIVDQVRRGAAAMRD---------GLLPGGPGRLSNIVFMG 180
Query: 187 MGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V +++ GL S+R +T+ST G VP I ++ EE V LA+SL
Sbjct: 181 MGEPLANYKRVIEAVHRICDPAPAGLGISQRSVTVSTVGLVPAIRKLTEENLQVRLAVSL 240
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ + +++A R Y + RR++ EY +++ IND A L
Sbjct: 241 HTPDDELRDTLVPVNTRWKVAEVMEAARGYADRT-GRRVSIEYALIRDINDQGWRADMLG 299
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K+L+ +NLIP NP PG ++ S + F +K G +R RG +I A
Sbjct: 300 KLLRRHLGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVKEQGVECTVRDTRGQEIAA 359
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 360 ACGQLAAE 367
>gi|262202048|ref|YP_003273256.1| radical SAM protein [Gordonia bronchialis DSM 43247]
gi|262085395|gb|ACY21363.1| radical SAM enzyme, Cfr family [Gordonia bronchialis DSM 43247]
Length = 368
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 119/371 (32%), Positives = 182/371 (49%), Gaps = 27/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
+ + A+ ++G+P + R +Q+ + Y R D M+D+ R +
Sbjct: 18 THFADLDAQARVAAVAELGLP----KFRANQLARQYYARLNGDVAEMTDLPASARDSVGA 73
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + TRK L R +E+V + R TLC+SSQ GC
Sbjct: 74 ALFPPLLTPVRHISCDDGSTRKTLWRLH-----DGTLLESVLMRYPDRNTLCISSQAGCG 128
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A L D E ++SN+V M
Sbjct: 129 MACPFCATGQGGLDRNLSTAEIVDQVRCAARSLRDGEFGEPG----------RLSNVVFM 178
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V ++ GL S R +T+ST G P+I R+ +E V LA+S
Sbjct: 179 GMGEPLANYTRVVSAVRQITSPAPDGLGISARSVTVSTVGLAPSIRRLADEGLAVTLAVS 238
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++ ++ ++DA R+Y + RR++ EY +++ +ND P A L
Sbjct: 239 LHTPDDELRDTLVPVNNRWSVQEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPWRADML 297
Query: 303 IK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K + K + +NLIP NP PG E+ S + F ++ G S +R RG +I
Sbjct: 298 GKKLHKALGSRVHVNLIPLNPTPGSEWDASPKPVEREFVRRVREQGVSCTVRDTRGQEIA 357
Query: 360 AACGQLKSLSK 370
AACGQL + +
Sbjct: 358 AACGQLAAEER 368
>gi|315604531|ref|ZP_07879594.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313543|gb|EFU61597.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 422
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 119/368 (32%), Positives = 178/368 (48%), Gaps = 24/368 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L + ++ + +G P R Q+ + + D MSDI +R + +
Sbjct: 62 HLADLDSAARKQVVKDLGFPA----FRADQLSRHYFSHFEADPARMSDIPAGMREAVAEA 117
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ P +V + +S + ++ R ++E+V + R TLCVSSQ GC +
Sbjct: 118 ---LLPHLVTKVVSLEADGGRTIKDLWRLY-DGAQVESVLMRYPQRTTLCVSSQAGCGMA 173
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L RNL+ EI+ QV A++ D +SN+V MGM
Sbjct: 174 CPFCATGQMGLTRNLSTAEIVDQVRAAQASCRDGALAGGPTT---------LSNVVFMGM 224
Query: 188 GEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GEPL N+ V +L D G S R IT+ST G VP I ++ E + V LA+SLH
Sbjct: 225 GEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLH 284
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +DLR+ L+PIN ++ + L+DA R Y L+ RR++ EY ++K +ND A L
Sbjct: 285 APDDDLRDDLIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKDMNDQEWRAQLLAD 343
Query: 305 ILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +N IP NP PG + S ++ F ++ +G ++ IR RG DI A
Sbjct: 344 ELNRRGHGWVHVNPIPLNPTPGSIWTASTRRAQHAFVSRLRDNGIATSIRDTRGSDIDGA 403
Query: 362 CGQLKSLS 369
CGQL +
Sbjct: 404 CGQLATAH 411
>gi|158337109|ref|YP_001518284.1| radical SAM protein [Acaryochloris marina MBIC11017]
gi|205829656|sp|B0C9F4|RLMN_ACAM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|158307350|gb|ABW28967.1| radical SAM enzyme, Cfr family [Acaryochloris marina MBIC11017]
Length = 351
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 120/362 (33%), Positives = 183/362 (50%), Gaps = 31/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G + +L P R Q+ +WIY +G+ ++ + ++ R +
Sbjct: 11 PPLLGASKAQLTHWAQTYQQPA----YRGQQVHQWIYQKGVHSLSDITVLPKQWRTEIAD 66
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +I + DGT K+LL+ IETV IP + R T+CVSSQVGC +
Sbjct: 67 I-PVGRSQIHHRSAAQDGTVKYLLKL-----ADGQIIETVGIPTQKRLTVCVSSQVGCPM 120
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG + RNL EI+ QVL + +++ N+V MG
Sbjct: 121 GCDFCATGKGEYQRNLACHEIVDQVLTVQEDF-----------------QQRVGNVVFMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N + V ++ + +G+ +R +T+ST G I ++ + + LA+SLHA
Sbjct: 164 MGEPLLNLEQVLAAVRSLNQDVGIG--QRSLTVSTVGIPKQILKLAQHQLQITLAVSLHA 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +R LVP + YPLE L+ CR Y + RR+TFEY++L G+ND AL L
Sbjct: 222 SNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQT-GRRVTFEYIVLSGVNDQTEHALELAHH 280
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + +NLIP+NP +Y QK + F ++ ++ IR RGLD AACGQL
Sbjct: 281 LRGFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITASIRRSRGLDKDAACGQL 340
Query: 366 KS 367
++
Sbjct: 341 RA 342
>gi|283953675|ref|ZP_06371206.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni 414]
gi|283794716|gb|EFC33454.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni 414]
Length = 356
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 135/377 (35%), Positives = 200/377 (53%), Gaps = 32/377 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ +++ + EEL E + + R QI++WIY + +F MS + +++R
Sbjct: 1 MKELVNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRL 52
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRG 114
L Q+F + V + S D + K+L V + +R
Sbjct: 53 ELAQNFHFSPVKCVKNEQSKDRSIKYLFELIDGLRVESVLLPMKEEKIDEKGKRISHARY 112
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVSSQVGC +CSFC T L RNL+A EI+ Q+L +
Sbjct: 113 TICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKK-------------QNNIP 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
R++ NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+
Sbjct: 160 YERRV-NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM 218
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
G++LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN
Sbjct: 219 NLGILLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IVQRKRVMFEYLLIDGIN 277
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYKRPSLENAIKFQDLLSSKGVTCTIRES 337
Query: 354 RGLDILAACGQLKSLSK 370
+GLDI AACGQLK K
Sbjct: 338 KGLDISAACGQLKERVK 354
>gi|254304122|ref|ZP_04971480.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324314|gb|EDK89564.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 358
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 129/378 (34%), Positives = 201/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKIARSFDEMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L + I + ++ ++S D T K+L GG +E + + R T
Sbjct: 56 REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGTIETVLLRHKDSKNKEIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL QV L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + ++
Sbjct: 159 GETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + R+TFEY+++ N
Sbjct: 219 IPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVLVEYQKQTKR-RVTFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|183981843|ref|YP_001850134.1| hypothetical protein MMAR_1830 [Mycobacterium marinum M]
gi|205829814|sp|B2HJP3|RLMN_MYCMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|183175169|gb|ACC40279.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 364
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 28/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L E A+ +G+P R Q+ Y R I D + M+D+ VR + +
Sbjct: 17 RHLADFDAEGRASAVAALGLP----PFRAKQLAHQYYGRLIADPRQMTDLPAAVREQIAE 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
E G + L V +E+V + R T+C+SSQ GC +
Sbjct: 73 TMFPNLLTAAREVTCDAGQTRKTL----WRATDGVTLESVLMRYPQRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV A + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLTRNLSTAEILEQVRAAAAALRD-------------EFGDRLSNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V ++ ++ MG S R +T+ST G P I ++ +E GV LA+SL
Sbjct: 176 MGEPLANYARVLAAVRRITEPPPMGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ + ++A +Y ++ RR++ EY +++ +ND P A L
Sbjct: 236 HAPDDELRDTLVPVNNRWKISEALEAAHYYAEVT-GRRVSVEYALIREVNDQPWRADLLG 294
Query: 304 K-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K + + + +NLIP NP PG ++ S + F + ++ G S +R RG +I A
Sbjct: 295 KRLHRALGPLVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREISA 354
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 355 ACGQLAAE 362
>gi|118617647|ref|YP_905979.1| hypothetical protein MUL_2078 [Mycobacterium ulcerans Agy99]
gi|205829818|sp|A0PQ89|RLMN_MYCUA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|118569757|gb|ABL04508.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 364
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 117/368 (31%), Positives = 179/368 (48%), Gaps = 28/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L E A+ +G+P R Q+ Y R I D + M+D+ VR + +
Sbjct: 17 RHLADFDAEGRASAVAALGLP----PFRAKQLAHQYYGRLIADPRQMTDLPAAVRDQIAE 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
E G + L V +E+V + R T+C+SSQ GC +
Sbjct: 73 TMFPNLLTAAREVTCDAGQTRKTL----WRATDGVTVESVLMRYPQRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV A + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLTRNLSTAEIVEQVRAAAAALRD-------------EFGDRLSNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
+GEPL N+ V ++ ++ G S R +T+ST G P I ++ +E GV LA+SL
Sbjct: 176 LGEPLANYARVLAAVRRITEPPPTGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ + ++A +Y ++ RR++ EY +++ +ND P A L
Sbjct: 236 HAPDDELRDTLVPVNNRWKISEALEAAHYYAEVT-GRRVSVEYALIREVNDQPWRADLLG 294
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L G +NLIP NP PG ++ S + F + ++ G S +R RG +I A
Sbjct: 295 KRLHGALGPLVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREISA 354
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 355 ACGQLAAE 362
>gi|310659155|ref|YP_003936876.1| fe-s-cluster redox enzyme [Clostridium sticklandii DSM 519]
gi|308825933|emb|CBH21971.1| putative Fe-S-cluster redox enzyme [Clostridium sticklandii]
Length = 341
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 129/364 (35%), Positives = 193/364 (53%), Gaps = 30/364 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K + + ELEE ++K+G + R QI+ + V+GI F + +IS+ ++ L
Sbjct: 2 KSDALSLTFSELEEEIVKLG----EQKFRAKQIYPKL-VQGISSFDEIGNISKVLKEKLK 56
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I + S DGTRK+LL+ IE V + K ++C+SSQVGC
Sbjct: 57 ERLYISKVSVYKVLTSELDGTRKYLLQL-----DDKNIIEAVLMRYKHGLSICISSQVGC 111
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ CSFC + LVRNLTA E++ Q+L ++ + + +ISN+VM
Sbjct: 112 LMGCSFCASTIDGLVRNLTAGEMIGQILAVQNDVKE-----------------RISNVVM 154
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MG GEPL NFDN+ K L I L+ R IT+ST G VP + + + + LAISL
Sbjct: 155 MGSGEPLDNFDNLIKFLDIVHQEDSLNIGYRHITISTCGVVPKVNELAKLGYPINLAISL 214
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +++ R I++P+ YP++ +I A + Y + RR+TFEY ++KG+NDS DA L
Sbjct: 215 HETTHEKRKIIMPVENAYPIDSVIKAAKDY-ANTTKRRVTFEYALIKGVNDSNEDANRLS 273
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG+ +NLIP N Y D+ I F +K + + +R G DI ACG
Sbjct: 274 KLLKGMLCHVNLIPVNTVEERTYKRPDKAAINAFLSVLKSNHIEATVRREMGKDINGACG 333
Query: 364 QLKS 367
QL+
Sbjct: 334 QLRR 337
>gi|291299709|ref|YP_003510987.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM
44728]
gi|290568929|gb|ADD41894.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM
44728]
Length = 388
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 119/369 (32%), Positives = 185/369 (50%), Gaps = 25/369 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ EE EA+ ++ P R +Q+ + Y R M+D+ R + +
Sbjct: 20 RHFADLTMEERREAVRELDEPA----FRANQLSRQYYTRHETSVSRMTDLPVASRDKIAE 75
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + DGT + L + +E+V + R T+CVSSQ GC +
Sbjct: 76 ALFPALLTPIKDTECDDGTTRKTL----YRLHDGSLVESVLMGYPDRATVCVSSQAGCGM 131
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RN++ EI+ QV+ A L ++S++V MG
Sbjct: 132 ACPFCATGQAGLTRNMSTAEIVEQVVNAARLAEQAKLG-------------RLSHVVFMG 178
Query: 187 MGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ V +L +D GL S R IT+ST G VP I R+ +E + V LA+SL
Sbjct: 179 MGEPLANYSRVVAALRRVTDPTPGGLGLSARHITVSTVGLVPAIRRLTDEDMSVTLAVSL 238
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ + ++DA +Y + RR++ EY M++ +ND P A L
Sbjct: 239 HAPDDELRDELVPVNSRWKVAEVLDAAWNYARRT-GRRVSIEYAMIRDVNDQPWRADLLG 297
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG A +NLIP NP PG ++ S + F ++ +G + +R RG DI ACG
Sbjct: 298 RLLKGKLAHVNLIPLNPTPGSKWDASPKPVEREFVARLRAAGVPTTVRDTRGRDIDGACG 357
Query: 364 QLKSLSKRI 372
QL + + +
Sbjct: 358 QLAASQQDV 366
>gi|227495074|ref|ZP_03925390.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM
15436]
gi|226831526|gb|EEH63909.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM
15436]
Length = 403
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 119/376 (31%), Positives = 177/376 (47%), Gaps = 26/376 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L + ++ L G+P R Q+ + + + D MSD+ + + +
Sbjct: 47 HLADLDLSGRKQVLKDAGLPA----FRADQLSRHYFGNYVADPAQMSDLPKNMVDQVRDS 102
Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ V + G T K L +E+V + R TLC+SSQ GC +
Sbjct: 103 LMPTLVKPVRTLEADGGLTIKHLWEL-----FDGSRVESVLMRYPQRTTLCISSQAGCGM 157
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV LA D ++SNIV MG
Sbjct: 158 ACPFCATGQMGLTRNLSTAEIVEQVRLAAKACEDGDLEGGPT---------RLSNIVFMG 208
Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGEPL N+ + ++L G S R IT+ST G VP I ++ + V LAISL
Sbjct: 209 MGEPLANYKAIVETLDRLIKESPEGFGLSARNITVSTVGLVPAIDKLAKLGHPVTLAISL 268
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+PIN ++ + L+DA R Y ++ RR++ EY +++ +ND A L
Sbjct: 269 HAPDDELRDELIPINSRWKVGELLDAARRYF-VATGRRVSIEYALIRDMNDHAWRAQLLA 327
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S +K F E ++++G S+ IR RG DI
Sbjct: 328 DELNKRGHGWAHVNPIPLNPTPGSIWTASTKKAQQEFVEILRKNGISTTIRDTRGSDIDG 387
Query: 361 ACGQLKSLSKRIPKVP 376
ACGQL + + +
Sbjct: 388 ACGQLATTVAKEEEAK 403
>gi|254819036|ref|ZP_05224037.1| hypothetical protein MintA_03871 [Mycobacterium intracellulare ATCC
13950]
Length = 367
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 183/370 (49%), Gaps = 25/370 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + A+ ++G+P R Q+ Y R I D + M+D+ +R +
Sbjct: 17 RHLADLDADGRAAAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I V E G + L V +E+V + R T+C+SSQ GC +
Sbjct: 73 TMFPILLTAVSEVACDAGETRKTL----WRALDGVTVESVLMRYPQRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV A ++L D G +++SN+V MG
Sbjct: 129 ACPFCATGQGGLSRNLSTAEILEQVRAAAAVLRDDFGPPS----------QRLSNVVFMG 178
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V ++ G S R +T+ST G P I ++ +E V LA+SL
Sbjct: 179 MGEPLANYARVVAAVRRIIAAPPHGFGISARSVTVSTVGLAPAIRKLADEGLAVTLALSL 238
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 239 HAPDDELRDTLVPVNNRWKIAEALDAARYYADVT-GRRVSVEYALIRDVNDQPWRADLLG 297
Query: 304 -KILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++ + + +NLIP NP PG E+ S + F ++ G S +R RG +I A
Sbjct: 298 QRLHRALGPLVHVNLIPLNPTPGSEWDASPKAVEREFVRRVRAKGVSCTVRDTRGREISA 357
Query: 361 ACGQLKSLSK 370
ACGQL ++
Sbjct: 358 ACGQLAFENR 367
>gi|329947859|ref|ZP_08294791.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170
str. F0386]
gi|328523483|gb|EGF50581.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170
str. F0386]
Length = 391
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 122/377 (32%), Positives = 173/377 (45%), Gaps = 26/377 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + A G+P R QI + + RD M+D+ R L
Sbjct: 32 RHLADLDLAGRKAACKDSGLP----SFRADQISRHYFTHLTRDGADMTDLPASQREQLCA 87
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + T K L V +E+V + K R TLCVSSQ GC
Sbjct: 88 ELLPELISPVRALRADGGRTIKHLWELH-----DGVRVESVLMRYKDRTTLCVSSQAGCG 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A + ++SN+V M
Sbjct: 143 MACPFCATGQMGLTRNLSTAEIVEQVRHAAQ---------TSAAGDLTGGPARLSNVVFM 193
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEP+ N+ NV +L D G S R IT+ST G VP I R+ E V LA+S
Sbjct: 194 GMGEPMVNYRNVVGALHRLIDPAPEGFGMSARGITVSTVGLVPLIRRLAGEGLPVTLAVS 253
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ L+P+N ++ + L+DA Y L+ RR++ EY ++K +ND A L
Sbjct: 254 LHAPDDELRDELIPVNSRWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHSWRAQLL 312
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L A +N IP NP PG + CS+ F + ++R+G ++ +R RG DI
Sbjct: 313 ADELNRRDAGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDID 372
Query: 360 AACGQLKSLSKRIPKVP 376
ACGQL + +
Sbjct: 373 GACGQLATEVLNQERAK 389
>gi|219669867|ref|YP_002460302.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
gi|259491984|sp|B8FS78|RLMN_DESHD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|219540127|gb|ACL21866.1| radical SAM enzyme, Cfr family [Desulfitobacterium hafniense DCB-2]
Length = 357
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 125/371 (33%), Positives = 201/371 (54%), Gaps = 19/371 (5%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K+ + + EL + ++G+P + R Q+++W+ + +++++ + +I
Sbjct: 1 MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELRNIGAGD 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + + V E+I+ DGTRK+L R V ++ + R T+CVS+
Sbjct: 57 RQKLQEGLFLQPLRKVREQIAQDGTRKFLFRCADGETLECVLMDYDRRKNRDRHTVCVST 116
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q+GC++ C+FC TG RNL+ EIL QVL L+ +++
Sbjct: 117 QIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQ------------EDPDFQVT 164
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
NIV MGMGEPL N++ V K++ + +D G RR+T+STSG P I ++ ++ V L
Sbjct: 165 NIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDNPQVGL 224
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ N R+ L+P+NRKYPLE L++AC Y L+N RITFE ++ G + A
Sbjct: 225 AVSLHSAHNTTRDQLIPMNRKYPLEELMEACGDYTTLTNR-RITFEIALISGQ-ATLEAA 282
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ +LKG A +NLIP NP G K++ F++ ++ G +R +G DI
Sbjct: 283 QAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESMGIPVSVREEKGTDID 342
Query: 360 AACGQLKSLSK 370
AACGQL+ +
Sbjct: 343 AACGQLRRQLE 353
>gi|87308293|ref|ZP_01090434.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
3645]
gi|87288850|gb|EAQ80743.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
3645]
Length = 351
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 130/374 (34%), Positives = 197/374 (52%), Gaps = 32/374 (8%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
+ L+ +++ G+P + R QI WI + F+ M+++ + +R L + +
Sbjct: 9 LDLTSLQALVVQWGLP----KFRAQQIRSWIVENRAQSFEDMANLPKPLRSQLAEKAQLW 64
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
EI + DGT K LL+ IE V + + R T+C+S+QVGC++ C FC
Sbjct: 65 STEIARHTTAADGTEKLLLQLHDGGR-----IECVLLRDGDRRTICISTQVGCAMGCVFC 119
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
+G + RNLT EI+ Q+L + LL VG ++S+IV+MGMGEPL
Sbjct: 120 ASGLDGVERNLTVGEIIEQMLRLQRLL---------------PVGERLSHIVVMGMGEPL 164
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDL 250
N D + +L AS GL S RRIT+ST G P I ++ + LA+SLHA + L
Sbjct: 165 ANVDRLLSALDFASSEEGLGISHRRITISTVGLPPAIRKLADRDSRYHLAVSLHAPDDQL 224
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
RN +VP N+ + +++A HY +S RR+TFEYV+L +ND P A L K+L+G P
Sbjct: 225 RNQIVPTNKNIGIHAILEAADHYFEIS-GRRLTFEYVLLAELNDQPEHAHRLAKLLRGRP 283
Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
A +N+IP+NP G Y ++ F ++ +G + R +G I AACGQL+
Sbjct: 284 ALLNIIPYNPVAGLPYRTPSKEAQHAFRAILEGAGLTVKFRQKKGDKINAACGQLR---- 339
Query: 371 RIPKVPRQEMQITG 384
P +QI+G
Sbjct: 340 --RNTPENLVQISG 351
>gi|237721458|ref|ZP_04551939.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229449254|gb|EEO55045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 344
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 129/370 (34%), Positives = 196/370 (52%), Gaps = 29/370 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K L+GM EL+ ++ +P QI W+Y + + M+++S + R L
Sbjct: 1 MSKYPLLGMTLVELQSLTKRLDMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L Q++ + VDE S DGT K+L + G +E+VYIP+ R TLCVSSQVG
Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYKV-----GENHFVESVYIPDDDRATLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q NLTA +I+ Q+ K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331
Query: 364 QLKSLSKRIP 373
L + +
Sbjct: 332 MLSTAKQEKN 341
>gi|254431713|ref|ZP_05045416.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001]
gi|197626166|gb|EDY38725.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001]
Length = 354
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 124/377 (32%), Positives = 183/377 (48%), Gaps = 42/377 (11%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L+GM +LE G P R Q+ W+Y +G R +S + + R L
Sbjct: 3 QPLLGMGLADLERWAQDQGQPA----FRGRQLHDWLYAKGARSLDAVSVLPKAWREQLLA 58
Query: 67 HFS------IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
I + ++ DGT K LL + IETV IP R T+CVSS
Sbjct: 59 EPPPGATDWIGRSRELHRSVARDGTTKLLL-----ATADGLSIETVGIPAPGRLTVCVSS 113
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG L R+L EI+ QVL R ++G+ P S
Sbjct: 114 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMGERP-----------------S 156
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI----- 235
++V MGMGEPL N + V ++ +G++ +R+IT+ST G + + E
Sbjct: 157 HVVFMGMGEPLLNIEAVLAAIDCLCTDLGMA--QRQITVSTVGVPRTLPTLAERALERLG 214
Query: 236 --GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
LA+SLHA LR L+P YP+E L+D CR Y ++ RR++FEY++L G+N
Sbjct: 215 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLDDCRRYVAIT-GRRVSFEYILLGGLN 273
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D P A L ++++G + +NLIP+NP E+ + F ++ + +R
Sbjct: 274 DQPHHAEALARLIRGFQSHVNLIPYNPIEEEEFQRPSPAAVEAFRWALQERRVAVSVRAS 333
Query: 354 RGLDILAACGQLKSLSK 370
RGLD AACGQL+ +
Sbjct: 334 RGLDADAACGQLRRRHQ 350
>gi|300933099|ref|ZP_07148355.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
resistens DSM 45100]
Length = 371
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 117/371 (31%), Positives = 189/371 (50%), Gaps = 26/371 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L M REE++EA+ ++G+P + R Q+ + Y R + D + M+D+ + R + +
Sbjct: 19 VHLADMSREEVKEAVAELGLP----KFRADQLARQYYGRLLADPEEMTDLPENKRGPVRE 74
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ TRK L R +E+V + R TLC+SSQ GC
Sbjct: 75 ALFPQLMTPLRHLNTDDGETRKTLWRL-----FDGTLLESVLMRYPGRATLCISSQAGCG 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ E++ QV A + + D ++SNIV M
Sbjct: 130 MACPFCATGQGGLDRNLSVGEMVEQVRHAAAAMRDGEVEGGEG---------RLSNIVFM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEPL N+ V ++ + G S+R +T+ST G P I ++ +E + V LA+S
Sbjct: 181 GMGEPLANYKRVVDTIRKITSPPPEGFGISQRNVTVSTVGLAPAIRKLADEGMTVRLAVS 240
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++ ++ ++DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 241 LHTPDDELRDELVPVNNRWSVDEVLDAARYYAD-TSGRRVSIEYALIRDMNDQPWRADLL 299
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L+G +N+IP NP PG ++ S + F ++ G +R +G +I
Sbjct: 300 GKKLRGALGSKVHVNVIPLNPTPGSKWDASPKAVQDEFVRRVEAQGVPCTVRDTKGQEIA 359
Query: 360 AACGQLKSLSK 370
AACGQL +
Sbjct: 360 AACGQLAAEED 370
>gi|320532046|ref|ZP_08032934.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135737|gb|EFW27797.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 391
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 122/377 (32%), Positives = 173/377 (45%), Gaps = 26/377 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + A G+P R Q+ + + R M+D+ R L
Sbjct: 32 RHLADLDLAGRKAACKDSGLP----SFRADQLSRHYFTHFTRHSADMTDLPAAQREQLCA 87
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + T K L V +E+V + K R TLCVSSQ GC
Sbjct: 88 ELLPELITPVRALRADGGRTIKHLWELH-----DGVRVESVLMRYKERTTLCVSSQAGCG 142
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A + ++SN+V M
Sbjct: 143 MACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNVVFM 193
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEP+ N+ NV +L D G S R IT+ST G VP I R+ E V LA+S
Sbjct: 194 GMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVS 253
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ L+P+N K+ + L+DA Y L+ RR++ EY ++K +ND A L
Sbjct: 254 LHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRAQLL 312
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L A +N IP NP PG + CS+ F + ++R+G ++ +R RG DI
Sbjct: 313 ADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDID 372
Query: 360 AACGQLKSLSKRIPKVP 376
ACGQL + +V
Sbjct: 373 GACGQLATEVLNQERVK 389
>gi|325290448|ref|YP_004266629.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus
DSM 8271]
gi|324965849|gb|ADY56628.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus
DSM 8271]
Length = 351
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 137/368 (37%), Positives = 202/368 (54%), Gaps = 19/368 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K G+ E+E+ L+ GI + R Q+++W+ +G+R + M +I QE
Sbjct: 1 MEKYDCRGLSEPEMEKLCLQNGI----KKFRADQVFRWVQQKGVRCWDEMKNIGQEDTDK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + F + EIV E++S DGTRK+L R P V ++ ++R T+CVS+QVG
Sbjct: 57 LKKVFCLQPLEIVKEQVSKDGTRKFLFRLPDGERIETVLMDYEKDLSRNRETVCVSTQVG 116
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG RNL+A EI QVL + I ++NIV
Sbjct: 117 CPVGCPFCATGVNGFHRNLSAGEITGQVLEIVRRMR------------INDPSFNVTNIV 164
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEP N ++V K++ I + G RR+T+STSG VP I R+ EE V LAIS
Sbjct: 165 FMGMGEPFLNEESVLKAVRILNSENGQKIGMRRMTISTSGVVPGIIRLAEENKQVGLAIS 224
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ N LR+ILVP+NR+YPL+ L+ ACR Y + RR+T E + + N + +A L
Sbjct: 225 LHSARNHLRDILVPMNRRYPLQQLMRACREYVNQT-GRRVTLEIALTEA-NANKDEAEAL 282
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
I++++G+P INLIP NP ++ I+ F ++ S +R +G DI AAC
Sbjct: 283 IRLIQGMPVHINLIPVNPVTESSMQRPAKEKIMEFKTLLEAKNLSVTVREEKGTDIDAAC 342
Query: 363 GQLKSLSK 370
GQL+ +
Sbjct: 343 GQLRQRLE 350
>gi|315639331|ref|ZP_07894493.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
gi|315480657|gb|EFU71299.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
Length = 356
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 136/372 (36%), Positives = 200/372 (53%), Gaps = 32/372 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ ++ EEL E + R QI +WIY + DF MS++ + +R L ++
Sbjct: 6 NILDLLPEELNEKI--------QPMFRVKQICQWIYQKYADDFSKMSNLPKNLREELAKN 57
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--------KSRGTLCVS 119
+ + V E+ S DG+ K+L V + ++ T+CVS
Sbjct: 58 YHFEPLKCVKEERSKDGSIKYLFELKDGLRIESVLLPMKEEKFDGEGKRLSHAKFTICVS 117
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC CSFC T L RNL+A EI+ Q+L + R++
Sbjct: 118 SQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKR-------------QNHIPYERRV 164
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
NIV MGMGEPL N +NV K++ I S + L+ S RR T+STSG I +GE GV+
Sbjct: 165 -NIVYMGMGEPLDNLNNVAKAVRILSHNDTLAISVRRQTISTSGLAKQIKELGEMNLGVL 223
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLHAV+++LR+ L+PIN+ Y + ++ A R +P + +++ FEY+++ GIND
Sbjct: 224 LAISLHAVNDELRSKLMPINKAYNIASVMQAVREFP-IDMRKKVMFEYLLIDGINDKIEH 282
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+K+L GI AK+NLI FNP G Y ++ V F + + + G + IR +GLDI
Sbjct: 283 AKELVKLLNGIKAKVNLILFNPHQGSIYKRPSLENAVKFQDLLSQKGVTCTIRESKGLDI 342
Query: 359 LAACGQLKSLSK 370
AACGQLK K
Sbjct: 343 SAACGQLKEREK 354
>gi|118472101|ref|YP_886882.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
smegmatis str. MC2 155]
gi|205829815|sp|A0QVE4|RLMN_MYCS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|118173388|gb|ABK74284.1| radical SAM enzyme, Cfr family protein [Mycobacterium smegmatis
str. MC2 155]
Length = 372
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 124/371 (33%), Positives = 183/371 (49%), Gaps = 19/371 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + L + A+ ++G+P R Q+ Y R I D Q M+D+ VR
Sbjct: 14 MPPQHLADLDETARAAAVTELGLPA----FRAKQLANQYYGRLIADPQQMTDLPAAVRDQ 69
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + V E G + L E+V + R T+C+SSQ G
Sbjct: 70 VAEKLFPTLINPVREIQCDAGETRKTL----WRAIDGSTFESVLMRYPQRNTVCISSQAG 125
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNLT EIL QV A S + E + G ++SNIV
Sbjct: 126 CGMACPFCATGQGGLQRNLTTAEILEQVRAASSTMR----AEHFGRTAGTAGGGRLSNIV 181
Query: 184 MMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N++ V ++ G S R +T+ST G P I ++ +E GV LA
Sbjct: 182 FMGMGEPLANYNRVLGAVRRIIAAPPNGFGISARSVTVSTVGLAPAIRKLADERLGVTLA 241
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++LR+ LVP+N ++ + ++DA R+Y + RR++ EY +++ +ND P A
Sbjct: 242 LSLHAPDDELRDTLVPVNNRWKVSEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPWRAD 300
Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K L G A +N+IP NP PG E+ S + F + ++ G S +R RG +
Sbjct: 301 LLGKKLHGALGPLAHVNVIPLNPTPGSEWDASPKPAEREFVKRVRERGVSCTVRDTRGRE 360
Query: 358 ILAACGQLKSL 368
I AACGQL +
Sbjct: 361 IAAACGQLAAE 371
>gi|94984740|ref|YP_604104.1| hypothetical protein Dgeo_0633 [Deinococcus geothermalis DSM 11300]
gi|123079957|sp|Q1J0P9|RLMN_DEIGD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|94555021|gb|ABF44935.1| 23S rRNA m(2)A-2503 methyltransferase [Deinococcus geothermalis DSM
11300]
Length = 344
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 117/338 (34%), Positives = 171/338 (50%), Gaps = 22/338 (6%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
R Q+ +W++V+G+ F+ M+++ + R L F + ++ S DG+ K+L
Sbjct: 17 FRQRQLLEWVFVQGVGTFEAMTNLPAQARADLASRFRLNPFREIETVRSADGSVKYLFTL 76
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL
Sbjct: 77 Q-----DGRQMEAVYMPYLDRKTICVSTMVGCPAKCAFCATGAMGFGRNLTPGEIVGQVL 131
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
R++ N+V MGMGEPL N++N ++ I L
Sbjct: 132 AVA--------------GGEGLAPRELRNLVFMGMGEPLLNYENTMQAARILLHPQALGM 177
Query: 213 SKRRITLSTSGFVPNIARVGEEIG--VMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
SKRR+TLST G I R+ E + LAISLHA R ++P + + ++ A
Sbjct: 178 SKRRVTLSTVGLPKGIRRLAAEDDLGIKLAISLHAPDEATRQRIIPTGHRNSIAEIMAAA 237
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
R Y ++ RR+TFEY ML+GIND A L +L+G+ + +NLIP NPW G + S
Sbjct: 238 REYQAVT-GRRVTFEYSMLRGINDHLWQAEELADLLRGLVSHVNLIPMNPWDGSGFESST 296
Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
++ I F + + G +R RG D AACGQL
Sbjct: 297 EEQIQAFYDVLAARGVDVSVRRSRGKDAGAACGQLALK 334
>gi|194336581|ref|YP_002018375.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme
BU-1]
gi|254807191|sp|B4SA62|RLMN_PELPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|194309058|gb|ACF43758.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme
BU-1]
Length = 359
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 185/372 (49%), Gaps = 20/372 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+++++ + EL++AL +G P R +QI +W++ F+ M+ +S +R L
Sbjct: 4 QQQNITDLTLTELQQALSLLGEPA----FRATQIHQWLFSHHAASFEEMTILSLALRKKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ FSI + V+ + + + + +E+V I ++R T CVSSQ+GC
Sbjct: 60 SESFSIHPLKRVEHQECFEEDCESPTEKILLELQDKSRVESVLIATENRRTACVSSQIGC 119
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L C FC TG RNLTA EI Q+ L+G G+ ++NIV
Sbjct: 120 PLQCPFCATGQMGFRRNLTAGEITGQIYALNELVG------------AKEPGKSLTNIVF 167
Query: 185 MGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
MGMGEPL N NV +++ S + S++RIT+ST G +P I R+G+ + LA+S
Sbjct: 168 MGMGEPLLNTGNVIEAIETLSTRNYRFCLSQKRITISTVGVIPEIQRLGKSGMKTKLAVS 227
Query: 243 LHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
LHA R L+PI + YPL+ L A Y S +T Y++LKGINDS DA
Sbjct: 228 LHAADQQKRESLMPIASRQYPLKELGTALSEYTQ-STGMPVTIVYLLLKGINDSLDDAKM 286
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L + K KINLI +N ++ F + + SG IR G I AA
Sbjct: 287 LARFSKTFLCKINLIDYNSIINIKFKPVYSATRDMFQQYLINSGLHVTIRKSYGTTINAA 346
Query: 362 CGQLKSLSKRIP 373
CGQL + S + P
Sbjct: 347 CGQLATASMQNP 358
>gi|293189850|ref|ZP_06608564.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309]
gi|292821265|gb|EFF80210.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309]
Length = 426
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 120/373 (32%), Positives = 181/373 (48%), Gaps = 24/373 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L + ++ L +G+P R Q+ + + D MSDI + ++
Sbjct: 65 HLADLDAVARKQVLKDLGLPA----FRADQLSRHYFTHFEADPANMSDIPAGMHEAVSDA 120
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ P++V + +S + ++ R ++E+V + R TLCVSSQ GC +
Sbjct: 121 ---LLPKLVTKVVSLEADGGRTIKDLWRLY-DGAQVESVLMRYPQRTTLCVSSQAGCGMA 176
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L RNL+ EI+ QV A++ D K+SN+V MGM
Sbjct: 177 CPFCATGQMGLTRNLSTAEIVDQVREAQASCRDGKLAGGPT---------KLSNVVFMGM 227
Query: 188 GEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GEPL N+ V +L D G S R IT+ST G VP I ++ E + V LA+SLH
Sbjct: 228 GEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLH 287
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +DLR+ L+PIN ++ + L+DA R Y L+ RR++ EY ++K +ND A L
Sbjct: 288 APDDDLRDELIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKNMNDQEWRAQLLAD 346
Query: 305 ILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +N IP NP PG + S + F + ++ +G ++ IR RG DI A
Sbjct: 347 ELNKRGHGWVHVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSDIDGA 406
Query: 362 CGQLKSLSKRIPK 374
CGQL + +
Sbjct: 407 CGQLATAVADGKR 419
>gi|148240394|ref|YP_001225781.1| Fe-S-cluster redox protein [Synechococcus sp. WH 7803]
gi|205829913|sp|A5GNG9|RLMN_SYNPW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|147848933|emb|CAK24484.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. WH 7803]
Length = 351
Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats.
Identities = 126/373 (33%), Positives = 186/373 (49%), Gaps = 37/373 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+G+ ELE + G R Q+ W+Y +G D Q ++ + + R L
Sbjct: 8 KTLLGLGASELERWAVSQGQSA----FRGRQLHDWLYAKGACDLQDITVLPKAWRASLQD 63
Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I + D K++ D T K LL +ETV IP R T+CVSSQVGC
Sbjct: 64 KGVIIGRLKEQDRKVAGDATTKLLL-----GTDDGETLETVGIPTDQRLTVCVSSQVGCP 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L R+L EI+ QVL R ++ R+ S++V M
Sbjct: 119 MACRFCATGKGGLQRSLYTHEIVAQVLSVREVM-----------------ERRPSHVVFM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238
GMGEPL N + V ++ +D +G+ +RRIT+ST G + R+ E
Sbjct: 162 GMGEPLLNIEAVLDAIRCLNDDLGIG--QRRITVSTVGVPRTLPRLAELAMERLGRAQFT 219
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA + LR L+P YP + L+D CRHY ++ RR++FEY++L G+ND P
Sbjct: 220 LAVSLHAPNQSLREELIPTAHAYPYDALLDDCRHYLAIT-GRRVSFEYILLGGLNDHPAH 278
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L + G + +NLI +NP E+ + I F ++ G + +R RGLD
Sbjct: 279 AEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLESRGVAVSLRASRGLDQ 338
Query: 359 LAACGQLKSLSKR 371
AACGQL+ ++
Sbjct: 339 DAACGQLRRSRQK 351
>gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 350
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 133/370 (35%), Positives = 189/370 (51%), Gaps = 27/370 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
M EEL+ L + Q+ W+Y +GI D+ M++IS +++ LL
Sbjct: 4 FFEMTEEELKTLLTSL----DQKPFHAKQLIDWVYGKGIIDWNEMTNISTDLKKLLQSQI 59
Query: 69 SIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
S+ + ++V K S D T K+L R +E+V I R T+CVSSQVGC
Sbjct: 60 SLSHLQLVHVKPSADLETYKFLWRLKDNK-----LVESVLICSGDRRTVCVSSQVGCPAK 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC +G Q RNL EI+ QV L L D ++S++V MGM
Sbjct: 115 CAFCASGKQGFFRNLRPHEIVEQVFLINQWLKD--------------KNERVSHVVYMGM 160
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL N+D V KS+ + S+ L+ S+RRIT+ST G V I R+ E V L +SLHA
Sbjct: 161 GEPLKNYDPVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLSREELKVSLVLSLHAP 220
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ +R ++P RKYPL+ +++A Y L+ ITFEY ++ GIND P A L +L
Sbjct: 221 NQHIRQKIIPYARKYPLDAIMEAMDEYAKLTKRD-ITFEYTLIAGINDHPDHAFELTHLL 279
Query: 307 KGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
G +NLIP+NP PG ++K I F + + + R +G DI AACGQL
Sbjct: 280 HGKSQFTVNLIPYNPVPGLRLKRPEKKAIKQFRAVLFGAKVVNTCRYTKGDDIAAACGQL 339
Query: 366 KSLSKRIPKV 375
K+
Sbjct: 340 ALQELEKEKI 349
>gi|300783906|ref|YP_003764197.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis
mediterranei U32]
gi|299793420|gb|ADJ43795.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis
mediterranei U32]
Length = 368
Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 115/368 (31%), Positives = 179/368 (48%), Gaps = 24/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E A+ ++G R Q+ + R D + M+DI R L
Sbjct: 18 RHLADLSVSERAAAVAELG----EKPFRAKQLSNHYFSRLTVDPEEMTDIPAASRQRLVA 73
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
V + DG + L +E+V + R TLC+SSQ GC +
Sbjct: 74 DLMPTLLTEVRALAADDGATRKTL----WRAHDGTLLESVLMRYPDRATLCISSQAGCGM 129
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV A +++ D +P ++SNIV MG
Sbjct: 130 ACPFCATGQGGLDRNLSTAEIVDQVRSAAAVMRD---------GAMPGGPGRLSNIVFMG 180
Query: 187 MGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ V ++ +D GL +R +T+ST G P I ++ +E + V LA+SL
Sbjct: 181 MGEPLANYKRVVAAVRRITDPAPGGLGIGQRSVTVSTVGLAPAIRKLADEKMQVRLAVSL 240
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ ++ ++ A R+Y ++ RR++ EY +++ IND P A L
Sbjct: 241 HTPDDELRDTLVPVNERWSVDEVLSAARYYAD-TSGRRVSIEYALIRDINDQPWRAELLA 299
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L+ +N+IP NP PG ++ S + F + G + +R RG +I A
Sbjct: 300 KRLRKHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRLVNAGGVACTVRDTRGQEIAA 359
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 360 ACGQLAAE 367
>gi|87125371|ref|ZP_01081217.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917]
gi|86167140|gb|EAQ68401.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917]
Length = 350
Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 127/369 (34%), Positives = 185/369 (50%), Gaps = 37/369 (10%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
L+G EELE+ + G P R Q+ W+Y +G ++ + + R L Q
Sbjct: 10 LLGRSAEELEQWAVAQGQPA----FRGRQLHDWLYAKGAETLAAITVLPKAWRLALEAQG 65
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I + D +++ D T K LL+ IETV IP R T+CVSSQVGC +
Sbjct: 66 VRIGRLQEQDRRVAADATTKLLLQT-----DDGELIETVGIPTDQRLTVCVSSQVGCPMA 120
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L R+L EI+ QVL R+++ R+ S++V MGM
Sbjct: 121 CRFCATGQGGLQRSLATHEIVDQVLSVRAVMD-----------------RRPSHVVFMGM 163
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
GEPL N D V ++ + +G+ +RRIT+ST G + ++ E LA
Sbjct: 164 GEPLLNIDAVLGAIRCLHNDLGIG--QRRITVSTVGVPRTLPQLAELAMARLGRAQFTLA 221
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LR L+P YP + L+ CRHY L+ RR++FEY++L G+ND+P A
Sbjct: 222 VSLHAPNQALREELIPTAHAYPYDDLLQDCRHYLELT-GRRVSFEYILLGGLNDAPTHAE 280
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L + G + +NLI +NP + + I F ++R G + +R RGLD A
Sbjct: 281 ELADRVGGFQSHVNLIAYNPIEEGAFQRPSAERINGFRRVLERRGVAVSLRASRGLDQDA 340
Query: 361 ACGQLKSLS 369
ACGQL+ S
Sbjct: 341 ACGQLRRRS 349
>gi|227543228|ref|ZP_03973277.1| possible Fe-S-cluster redox protein [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181037|gb|EEI62009.1| possible Fe-S-cluster redox protein [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 398
Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 126/388 (32%), Positives = 189/388 (48%), Gaps = 32/388 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ + ++E E L ++G+P + R +QI + Y R D M+D+ + VR
Sbjct: 19 SMPPKHYADYTKDERIEILKELGLP----KFRDNQIARHYYGRFEADPGLMTDLPESVRT 74
Query: 63 LLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ + V E + D T+K L + +E+V + R TLC+SSQ
Sbjct: 75 TVGEKLFPQLMSPVRETSADDGKTQKMLWKLH-----DGTLLESVLMEYPDRATLCISSQ 129
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C FC TG L RNL+ EI+ QV A + + + G ++SN
Sbjct: 130 AGCGMACPFCATGQGGLDRNLSTGEIVDQVRAAAATM--------------QAKGGRLSN 175
Query: 182 IVMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
IV MGMGEPL N++ V ++ G S+R ITLST G P I R E
Sbjct: 176 IVFMGMGEPLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSCR 235
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLH ++LR+ LVP N ++ + ++DA R Y S RR++ EY +++ IND P
Sbjct: 236 LAVSLHTPDDELRDSLVPANNRWSIAEVLDAAREYAEAS-GRRVSIEYALIRDINDQPWR 294
Query: 299 ALNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A L K L G +NLIP NP PG ++ S ++ F + + G + +R RG
Sbjct: 295 ADLLGKKLHGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTRG 354
Query: 356 LDILAACGQLKSLSKRIPKVPRQEMQIT 383
+I AACGQL + +R R+ + T
Sbjct: 355 QEIAAACGQLAAE-ERTGAAARRAKEAT 381
>gi|302039009|ref|YP_003799331.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Nitrospira defluvii]
gi|300607073|emb|CBK43406.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Nitrospira defluvii]
Length = 366
Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 145/363 (39%), Positives = 206/363 (56%), Gaps = 28/363 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+ +L+ + E+ + +G P R SQI +W+Y R F MS++SQ+ R L
Sbjct: 12 SRTNLLALTESEMAAFVASLGWPA----YRASQILRWLYQERARTFAEMSNLSQKDREYL 67
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I V S DGT+K +L ++E V IP++ R TLC+S+QVGC
Sbjct: 68 TGSSRIERTSAVQIFSSQDGTKKLVLTL-----ADGNQVECVLIPDEDRLTLCLSTQVGC 122
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC TGT L RNL A EI+ QVLLA+ L + G++++N+V
Sbjct: 123 TLDCGFCLTGTLGLQRNLRAHEIIDQVLLAQDHLQE---------------GQRLTNLVF 167
Query: 185 MGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N D V ++ + + + GL FS RRIT+ST+G I V + V LAISL
Sbjct: 168 MGMGEPLANLDAVADAVTRLTNQTWGLGFSGRRITISTAGLASRIKDVAP-LKVNLAISL 226
Query: 244 HAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
+A ++ LR+ L+P NR + L+ L+ ACR YP L++ R+TFEYV+L +ND DA L
Sbjct: 227 NATTDALRDQLMPAANRLHSLDALLAACRAYP-LADRDRLTFEYVLLADVNDRTEDAARL 285
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+K+L+G+ K+NLI FNP+PG Y I TF + ++R +R RG D+L AC
Sbjct: 286 VKLLRGLRCKVNLIAFNPFPGNPYRRPSDAAIDTFQDTLRRGHVDVYLRRSRGRDVLGAC 345
Query: 363 GQL 365
GQL
Sbjct: 346 GQL 348
>gi|270284175|ref|ZP_05965684.2| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
gi|270277254|gb|EFA23108.1| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
Length = 369
Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 183/370 (49%), Gaps = 26/370 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+ EE ++G+P + R +Q+ K Y + +D R Q
Sbjct: 15 HFADLTNEERIAKAKELGLP----KFRVNQLAKHYYDHFDVNAADFTDFPAAHRGQAAQT 70
Query: 68 FSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F V +++ D T K L IE+V + +R TLC+SSQVGC +
Sbjct: 71 FFPQLITEVMRQVADDGQTIKTLWDL-----FDGSRIESVLMRYPNRATLCISSQVGCGM 125
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RN++ EIL QV +A ++ + ++SNIV MG
Sbjct: 126 GCPFCATGQLGLTRNMSTGEILEQVRVAARMMREGEVAGGPG---------RLSNIVFMG 176
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEP+ N+ +V ++ S G S R IT+ST G VP I ++ +E V LA+SL
Sbjct: 177 MGEPMGNYKSVMSAVRQISAMPPDGFGISARNITVSTVGVVPGIRKLAQEGLPVRLAVSL 236
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA S++LR+ LVP+N+++ + ++DA Y SN R++ EY +++GIND A L
Sbjct: 237 HAPSDELRDKLVPMNKRFNTKQVLDAAHDYYLASNR-RVSIEYALMRGINDQAEHARLLA 295
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L A +N IP NP G ++ S +D F + + R+G ++ +R RG DI
Sbjct: 296 KRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQFLDILHRAGITATMRDTRGQDIDG 355
Query: 361 ACGQLKSLSK 370
ACGQL + K
Sbjct: 356 ACGQLAAKVK 365
>gi|320096228|ref|ZP_08027813.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319976833|gb|EFW08591.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 399
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 124/383 (32%), Positives = 183/383 (47%), Gaps = 27/383 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L + + L +G+P R Q+ + + R D MSDI +R +
Sbjct: 35 HLADLDAAGRKAVLAGMGLP----PFRADQLSRHYFERFEADPADMSDIPASMRQRVRDS 90
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ P +V +S ++ R ++E+V + R TLCVSSQ GC +
Sbjct: 91 ---LLPPLVSGVVSLRADAGRTVKDLWRLY-DGAQVESVLMRYPQRTTLCVSSQAGCGMA 146
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L RNL+ EI+ QV LA++ D +++N+V MGM
Sbjct: 147 CPFCATGQMGLTRNLSTAEIVDQVRLAQAACRDGALAGGPT---------RLTNVVFMGM 197
Query: 188 GEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GEPL N+ V +L D G S R +T+ST G VP I R+ E V LA+SLH
Sbjct: 198 GEPLANYKTVVGALHRLVDPVPEGFGMSARNVTVSTVGLVPAIRRLAGEGLPVTLAVSLH 257
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +DLR+ L+P+N ++ + L+DA RHY L RR++ EY ++K +ND A L
Sbjct: 258 APDDDLRDDLIPVNSRWKVGELLDAARHYF-LVTGRRVSIEYALIKDMNDQVWRAQLLAD 316
Query: 305 ILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L A +N IP NP PG + S ++ F ++ +G + IR RG DI A
Sbjct: 317 ELNRRGKGWAHVNPIPLNPTPGSIWTASTRRSQDAFVATLRDNGVVTSIRDTRGSDIDGA 376
Query: 362 CGQLKSLSKRIPK---VPRQEMQ 381
CGQL + + + R+E +
Sbjct: 377 CGQLATSAAKRTAGDGSSRKETR 399
>gi|41409041|ref|NP_961877.1| hypothetical protein MAP2943c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|81571119|sp|Q73VR8|RLMN_MYCPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|41397400|gb|AAS05260.1| hypothetical protein MAP_2943c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 364
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 116/368 (31%), Positives = 180/368 (48%), Gaps = 28/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + A+ ++G+P R Q+ Y R I D + M+D+ +R +
Sbjct: 17 RHLADLDADGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I E G + L V +E+V + R T+C+SSQ GC +
Sbjct: 73 TMFPILLTAASEVTCDAGQTRKTL----WRALDGVTVESVLMRYPHRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V ++ G S R +T+ST G P I ++ +E GV LA+SL
Sbjct: 176 MGEPLANYARVVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 236 HAPDDELRDTLVPVNNRWKIAEALDAARYYADVT-GRRVSVEYALIRDVNDQPWRADLLG 294
Query: 304 K-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ + + + +NLIP NP PG ++ S + F ++ +G S +R RG +I A
Sbjct: 295 RRLHRALGPLVHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREISA 354
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 355 ACGQLAAE 362
>gi|323344170|ref|ZP_08084396.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269]
gi|323094899|gb|EFZ37474.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269]
Length = 346
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 191/366 (52%), Gaps = 29/366 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K L+GM EL+ ++ +P Q+ KW+Y + + M++IS+ R L
Sbjct: 4 SKIPLLGMTLSELKTVAKELEMPA----FTGGQMAKWLYRQHVASIDDMTNISKSNREKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ +++ +DE+ S DGT K+L +ETVYIP++ R TLCVSSQVGC
Sbjct: 60 KKAYTVGCASPIDEQHSNDGTIKYLFPTE-----QGKYVETVYIPDEERATLCVSSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG Q NLTA +IL Q+ K++NIV
Sbjct: 115 KMNCLFCQTGKQGYEGNLTATDILNQIYAL-------------------PERDKLTNIVF 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MG GEP+ N +NV ++ +I + ++S +RIT+S+ G + R EE +AISLH
Sbjct: 156 MGQGEPMDNLENVLRATNILTADYAYAWSPKRITVSSVGVRNKLKRFLEESDCHVAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ ++ R L+P P+ ++D R+Y S+ RR++FEY++ GIND+ A ++K
Sbjct: 216 SPIHEQRAGLMPAEGGMPIREIVDLLRNY-DFSHQRRLSFEYIVFGGINDTQTHAKEIVK 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG+ +INLI F+ P +D + + F + + G + IR RG DI AACG
Sbjct: 275 LLKGLDCRINLIRFHQIPNVPLRGADDRTMEAFRDYLTAHGLFTTIRASRGEDIFAACGL 334
Query: 365 LKSLSK 370
L + K
Sbjct: 335 LSTAKK 340
>gi|154509153|ref|ZP_02044795.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC
17982]
gi|153798787|gb|EDN81207.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC
17982]
Length = 406
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 120/373 (32%), Positives = 182/373 (48%), Gaps = 24/373 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L + ++ L +G+P R Q+ + + D MSDI + ++
Sbjct: 45 HLADLDAVARKQVLKDLGLPA----FRADQLSRHYFTHFQADPANMSDIPAGMHEAVSDA 100
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ P++V + +S + ++ R ++E+V + R TLCVSSQ GC +
Sbjct: 101 ---LLPKLVTKVVSLEADGGRTIKDLWRLY-DGAQVESVLMRYPQRTTLCVSSQAGCGMA 156
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L RNL+ EI+ QV A++ D K+SN+V MGM
Sbjct: 157 CPFCATGQMGLTRNLSTAEIVDQVREAQASCRDGKLAGGPT---------KLSNVVFMGM 207
Query: 188 GEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GEPL N+ V +L D G S R IT+ST G VP I ++ E + V LA+SLH
Sbjct: 208 GEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLH 267
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +DLR+ L+PIN ++ + L+DA R Y L+ RR++ EY ++K +ND A L
Sbjct: 268 APDDDLRDELIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKDMNDQEWRAQLLAD 326
Query: 305 ILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +N IP NP PG + S + F + ++ +G ++ IR RG DI A
Sbjct: 327 ELNKRGHGWVHVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSDIDGA 386
Query: 362 CGQLKSLSKRIPK 374
CGQL ++ +
Sbjct: 387 CGQLATVVADGKR 399
>gi|148243053|ref|YP_001228210.1| Fe-S-cluster redox protein [Synechococcus sp. RCC307]
gi|205829914|sp|A5GVE8|RLMN_SYNR3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|147851363|emb|CAK28857.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. RCC307]
Length = 346
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 197/374 (52%), Gaps = 38/374 (10%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ ++L+G+ + +LE G+P R Q+ W+Y +G R + ++ + +R
Sbjct: 1 MALKALLGLSQAQLETWAKDQGLP----PFRGRQLHDWLYAKGARHWHDITVLPAALRQQ 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + ++ ++ DGT K LL + +ETV IP + R T+CVSSQVG
Sbjct: 57 --EPLPLGRSNELERHLAQDGTLKLLL-----ATDDGLSLETVGIPTRDRLTVCVSSQVG 109
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L EI+ QVL R ++ R+ S++V
Sbjct: 110 CPMACRFCATGKEGLQRSLEPHEIVDQVLTVREVM-----------------QRRPSHVV 152
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
MGMGEPL N D+V ++ S +G++ R+IT+ST G + R+ E
Sbjct: 153 FMGMGEPLLNSDHVLTAIDCLSRDLGMAM--RQITVSTVGVPNTLPRLAELALERLGRAQ 210
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LA+SLHA LR L+P R YP E L++ CRHY +S RR++FEY++L +NDSP
Sbjct: 211 FTLAVSLHAPDQALREELIPTARAYPYEQLLEDCRHYVAIS-GRRVSFEYILLGNLNDSP 269
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
R A L + ++G + +NLIP+NP E+ + + F+ +K+ G + +R RGL
Sbjct: 270 RQAQALAEQVRGFQSHVNLIPYNPIAEEEFQRPEPARVDAFAAALKQRGVAVSVRASRGL 329
Query: 357 DILAACGQLKSLSK 370
D AACGQL+ +
Sbjct: 330 DQNAACGQLRRQRQ 343
>gi|34763242|ref|ZP_00144204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27887095|gb|EAA24204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 358
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 129/378 (34%), Positives = 202/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L + I + ++ ++S D T K+L GG +E + + R T
Sbjct: 56 REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGTIETVLLRHKDSKNREIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL Q+ + L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYIVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + ++
Sbjct: 159 GETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|206890968|ref|YP_002247985.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 342
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 155/365 (42%), Positives = 216/365 (59%), Gaps = 27/365 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K++L + +++E+ +L +P R+ QI +WIY + + +++ S+ +R
Sbjct: 1 MYKQNLKELTTKQIEKIILDESLPL----YRSKQIVQWIYKKFVDSINDITEWSKSLRER 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
++ + I + D++IS DGT K+L +IE+V I +K R TLCVSSQVG
Sbjct: 57 FSEKYYIGRINLFDKRISIDGTIKFLWELE-----DGEKIESVLISDKDRLTLCVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C L C FC TG L RNL A EI+ Q + ++ RKI+NIV
Sbjct: 112 CMLKCKFCLTGKIGLKRNLKAWEIVDQYIQVSKII--------------QKENRKITNIV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
MGMGEPL NF+NV ++L D + FS RITLST+G +P I + + + LAIS
Sbjct: 158 FMGMGEPLLNFENVVEALWRLKD--LILFSPSRITLSTAGIIPAIKELPYKAPAIKLAIS 215
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A N R+ L+PIN+KYPL LI R YP L RITFEY+++KGIN S +DA L
Sbjct: 216 LNATDNKTRSYLMPINKKYPLHELIKTLRDYP-LKPRHRITFEYILIKGINCSEKDAYRL 274
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKGIP+KINLIPFNPW GCE+ + +I+ F E + GYS IR +G DILAAC
Sbjct: 275 SELLKGIPSKINLIPFNPWEGCEFERPEDNEILNFQEILAARGYSVFIRKSKGTDILAAC 334
Query: 363 GQLKS 367
GQLK+
Sbjct: 335 GQLKA 339
>gi|184200284|ref|YP_001854491.1| hypothetical protein KRH_06380 [Kocuria rhizophila DC2201]
gi|205829780|sp|B2GJ15|RLMN_KOCRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|183580514|dbj|BAG28985.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201]
Length = 382
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 170/367 (46%), Gaps = 21/367 (5%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L +E L G P R SQ+ K + R D M+D+ R L
Sbjct: 30 HLADFDMAGRKEFLRAAGYPA----FRASQLSKHYFERFEADPAAMTDLPAGQREELVAK 85
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ V + + +G + + +E+V + R T+C+SSQ GC +
Sbjct: 86 AMPPLLKTVRQLRADEGMTVKSVH----RLFDNAMVESVLMRYDKRVTMCISSQAGCGMN 141
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L RNL+A EI+ QV+ L D + E +++SNIV MGM
Sbjct: 142 CPFCATGQSGLTRNLSAAEIVDQVVQGVRALRDGAVGDPEEAP------QRVSNIVFMGM 195
Query: 188 GEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GE L N+ ++ GL S R +T+ST G VP I + E + LA+SLH
Sbjct: 196 GEALANYKATMGAVHRIIDPSPEGLGISARGLTMSTVGLVPGIRKFTLEKLPITLALSLH 255
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++LR+ L+PIN ++ ++ +DA R Y + RR++ EY +++ IND A L +
Sbjct: 256 APDDELRDELIPINTRWKVDEALDAARDYYDAT-GRRVSIEYALIRDINDQGWRADLLGE 314
Query: 305 ILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +N IP NP PG ++ S F E ++ G + +R RG DI A
Sbjct: 315 KLNKRGGGWVHVNPIPLNPTPGSKWTASRPGVEQNFVERLRAHGIPTTVRDTRGSDIDGA 374
Query: 362 CGQLKSL 368
CGQL +
Sbjct: 375 CGQLATE 381
>gi|227833380|ref|YP_002835087.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC
700975]
gi|262184366|ref|ZP_06043787.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
aurimucosum ATCC 700975]
gi|227454396|gb|ACP33149.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC
700975]
Length = 368
Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats.
Identities = 115/373 (30%), Positives = 178/373 (47%), Gaps = 31/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E EAL ++G+P + R Q+ K YV D M+DI R + +
Sbjct: 19 KHFADLTEAERIEALAELGLP----KFRAKQLAKHYYVHHTADVSEMTDIPAAAREAVQE 74
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
E + + T K L R +E+V + R TLC+SSQ GC
Sbjct: 75 RLFPTLMEPIRQTSTDDGETTKSLWRLH-----DGTLLESVLMRYPGRATLCISSQAGCG 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q A L+ + G ++SN+V M
Sbjct: 130 MACPFCATGQGGLDRNLSTAEIVEQFRHAARLMEE--------------EGGRLSNVVFM 175
Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V ++ + S G S+R +T+ST G P I ++ +E LA+S
Sbjct: 176 GMGEPLANYKRVVHAVRQITGSELTGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTLAVS 235
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++P+E ++DA ++Y S RR++ EY +++ ND A L
Sbjct: 236 LHTPDDELRDTLVPVNNRWPVEEVLDAAKYYADKS-GRRVSIEYALIRDKNDQDFRADML 294
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L +N+IP NP PG E+ + + F + G +R +G +I
Sbjct: 295 GRKLHAALGSKVHVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGDEIA 354
Query: 360 AACGQLKSLSKRI 372
AACGQL + +
Sbjct: 355 AACGQLAADERET 367
>gi|261880280|ref|ZP_06006707.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
gi|270332967|gb|EFA43753.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
Length = 359
Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 194/376 (51%), Gaps = 33/376 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+ L+GM EL+ +G+P QI W+YV+ +R M++IS+ R
Sbjct: 1 MNKKILLGMTPTELKAVAKSLGMPA----FTGDQIANWMYVQHVRSIDEMTNISKTNRAC 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE---------IETVYIPEKSRG 114
L + + I + +D + S DGT K+L +ETVYIP+ R
Sbjct: 57 LAEQYEIGCVDPIDAQHSEDGTIKYLFPVRTTSYKEGEAGNEKTSPKFVETVYIPDGERA 116
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
TLCVS +VGC + C FC TG Q L+A +IL Q+
Sbjct: 117 TLCVSCEVGCKMNCLFCQTGKQGFQGYLSAADILNQIYSL-------------------P 157
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++NIV MG GEP+ N DNV ++ I + ++S +RIT+ST G + R EE
Sbjct: 158 ERESLTNIVFMGQGEPMDNLDNVLRTTEILTAPYAFAWSPKRITVSTIGIKNELKRFIEE 217
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
LA+SLH+ ++ R L+PI R P+E ++D R+Y S+ RR++FEY++ +GIND
Sbjct: 218 SDCHLAVSLHSPFHEQRAELMPIERTTPVEEIVDLLRNY-DFSHQRRLSFEYIVFEGIND 276
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
S A ++++L+G+ ++NLI F+P P +D K + +F + G + IR R
Sbjct: 277 SKEHARAIVRLLEGLFCRVNLIRFHPIPHVNLHGADDKQMESFRNYLTTHGIHTTIRASR 336
Query: 355 GLDILAACGQLKSLSK 370
G DILAACG L + K
Sbjct: 337 GQDILAACGLLNTSRK 352
>gi|227503385|ref|ZP_03933434.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC
49725]
gi|306836373|ref|ZP_07469351.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726]
gi|227075888|gb|EEI13851.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC
49725]
gi|304567733|gb|EFM43320.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726]
Length = 374
Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats.
Identities = 112/371 (30%), Positives = 177/371 (47%), Gaps = 31/371 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E + L +IG+P + R QI K Y D + M+DI R + +
Sbjct: 23 KHFADLSESERIDKLAEIGLP----KFRAKQIAKHYYEHLTDDVEEMTDIPAGKREEVKE 78
Query: 67 HFSIIYPEIV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + T K L R +E+V + R TLC+SSQ GC
Sbjct: 79 AFFPELMKPIRTTSTDDGETTKSLWRLH-----DGTLLESVLMRYPGRATLCISSQAGCG 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q + + G ++SN+V M
Sbjct: 134 MACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNVVFM 179
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V +++ D G S+R +T+ST G P I ++ +E LA+S
Sbjct: 180 GMGEPLANYKRVVQAVRQITGQDGTGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVS 239
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A L
Sbjct: 240 LHTPDDELRDSLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADML 298
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L +N+IP NP PG E+ + + + F ++ G +R +G +I
Sbjct: 299 GRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPKARLNEFVRRVQAQGVPCTVRDTKGDEIA 358
Query: 360 AACGQLKSLSK 370
AACGQL + +
Sbjct: 359 AACGQLAADER 369
>gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
lettingae TMO]
gi|205829915|sp|A8F8C2|RLMN_THELT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO]
Length = 343
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 130/364 (35%), Positives = 199/364 (54%), Gaps = 30/364 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ M E+ + + ++G+ + R QI WIY + + F+ M+++S++ R LL ++
Sbjct: 2 NILSMTYEKFVQKIQELGLE----KYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLREN 57
Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I P+IV +++S D T K+L IE+V + + T C+S+Q+GC +
Sbjct: 58 FCIQIPKIVSKRVSSIDKTTKYLYELS-----DGNTIESVLLFHEGYATACISTQIGCPV 112
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG VRNL A EI+ Q+L + + NIV MG
Sbjct: 113 KCSFCATGQSGFVRNLDAGEIVSQILAIEK-----------------DSKQTVRNIVYMG 155
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N+DNV KS+ I D + RR+TLST G I ++ EE + LAISLHA
Sbjct: 156 MGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHA 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+ R+ ++PINRKY ++ +I+A ++Y S+ R+T EY+++K ND DA L K+
Sbjct: 216 STNEKRDQIIPINRKYSIQEIINAAKNYQERSDR-RLTIEYILIKEFNDFDEDARKLAKL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L G+ +NLIP N + + I F E + SG + IR +G DI AACGQL
Sbjct: 275 LNGLKVFVNLIPVNST-FSNFEKPAKWKINRFKEILINSGIEAEIRYEKGADIEAACGQL 333
Query: 366 KSLS 369
+ +
Sbjct: 334 RIRN 337
>gi|226227123|ref|YP_002761229.1| hypothetical protein GAU_1717 [Gemmatimonas aurantiaca T-27]
gi|259491989|sp|C1A949|RLMN_GEMAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|226090314|dbj|BAH38759.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 360
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 132/367 (35%), Positives = 182/367 (49%), Gaps = 35/367 (9%)
Query: 7 ESLIGMMREE----LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
L+ + L E + G P R +Q++ ++ R +R F M+++ + +R
Sbjct: 5 PDLLDFDPDAALALLGEWMAARGEPA----YRAAQVFGRLWQRPVRSFDEMTELPKALRE 60
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L F I E+ + S DGT K+L R IETV IP+ R T C+SSQ
Sbjct: 61 GLAGSFRITALELTTRQKSMDGTEKFLFRMH-----DGQLIETVAIPDGDRLTFCISSQA 115
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+L C+FC TG RNL EI QV R L +NI
Sbjct: 116 GCALQCAFCATGAMGFQRNLHPSEIAGQVRELRMLTPSIVP----------------TNI 159
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEPL N+ V +LS+ +D L R IT+ST G +P I + LAI
Sbjct: 160 VFMGMGEPLMNWKAVSPTLSLLNDPRALGIGARHITISTVGVLPGIVALAARPEQFRLAI 219
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
S+HA S+ LR L+P+N KYPL +I A R + R+TFEYVML G+ND P A
Sbjct: 220 SIHAPSDALRRTLMPVNTKYPLADVIAAAREFDR-----RVTFEYVMLGGVNDQPEHAAQ 274
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ++ + A +NLIP +P + S I F++ I+ G + +R RGLDI AA
Sbjct: 275 LAQLARDCRAFVNLIPLHPGGSMGFSPSTTPTINAFAKAIRARGVETAVRRSRGLDIAAA 334
Query: 362 CGQLKSL 368
CGQL++
Sbjct: 335 CGQLRTE 341
>gi|296171525|ref|ZP_06852789.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894087|gb|EFG73848.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 367
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 117/368 (31%), Positives = 182/368 (49%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E A+ ++ +P R Q+ Y R I D + M+D+ VR + +
Sbjct: 17 RHLADLDAEGRAAAVAELRLPA----FRAKQLAHQYYGRLIADPRAMTDLPAAVRERVAE 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ G + L E+V + R T+C+SSQ GC +
Sbjct: 73 AMFPRLLTAAADVACDAGQTRKTLWRGT----DGTTFESVLMRYPQRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV A + L D G G+++SN+V MG
Sbjct: 129 ACPFCATGQGGLTRNLSTAEIVEQVRSAAAALRDDFGP----------PGQRLSNVVFMG 178
Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V ++ ++ G S R +T+ST G P I ++ +E GV LA+SL
Sbjct: 179 MGEPLANYARVVAAVRRITEPPPHGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSL 238
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ ++ +DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 239 HAPDDELRDTLVPVNNRWKIDEALDAARYYADVT-GRRVSVEYALIRDVNDQPWRADLLG 297
Query: 304 K-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K + + + +NLIP NP PG E+ S + F ++ G S +R RG +I A
Sbjct: 298 KRLHRALGPLVHVNLIPLNPTPGSEWDASPKAAEREFVRRVRAQGVSCTVRDTRGREISA 357
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 358 ACGQLAAE 365
>gi|257451432|ref|ZP_05616731.1| florfenicol resistance protein [Fusobacterium sp. 3_1_5R]
gi|257466897|ref|ZP_05631208.1| florfenicol resistance protein [Fusobacterium gonidiaformans ATCC
25563]
gi|315918044|ref|ZP_07914284.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|317058012|ref|ZP_07922497.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313683688|gb|EFS20523.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313691919|gb|EFS28754.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
Length = 349
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 130/373 (34%), Positives = 196/373 (52%), Gaps = 28/373 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K +L+ + ++EL E L+ G+ + +++ W++ + R+ Q M+++S + R +
Sbjct: 1 MEKLNLLDLSKKELTEFLVAEGM----KKFYGKEVFVWLHKKFARNIQEMTNLSLQNREI 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQ 121
L + I Y ++ ++S D T K+L + IETV + + R TLC+SSQ
Sbjct: 57 LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLE-----DGNTIETVLLRHRDQRNTLCISSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + CSFC TG VRNL EIL QV L G K++N
Sbjct: 112 VGCPVKCSFCATGQDGFVRNLRVSEILNQVYTVERRLN--------------KRGEKLTN 157
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
+V MGMGEPL N + + K+L I S G+ SKRRIT+STSG VP I R + E++ V LA
Sbjct: 158 LVFMGMGEPLINIEALLKALEILSSEEGICISKRRITISTSGIVPAIERILMEKVPVELA 217
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH+ N+ R+ ++PIN+ YPLE L Y + R+TFEY+++K N S DA
Sbjct: 218 VSLHSAINEKRDQIIPINKAYPLEDLAAVLGEYQRQTKR-RLTFEYILIKDFNVSEGDAN 276
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
L +NLIP NP +K I F + +K + +R +G DI
Sbjct: 277 ALADFAHQFDHVVNLIPCNPVADTGLERPSEKKIERFYDYLKNVRKVNVSLRQEKGTDID 336
Query: 360 AACGQLKSLSKRI 372
ACGQL+ ++
Sbjct: 337 GACGQLRQNQRKK 349
>gi|296329385|ref|ZP_06871885.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296153505|gb|EFG94323.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 358
Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats.
Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 29/374 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + R +L
Sbjct: 4 EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKDREIL 59
Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVS 119
+ I + ++ ++S D T K+L GG +E + + R TLCVS
Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGTIETVLLRHKDSKNKEIRNTLCVS 116
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + CSFC TG +RNL+ EIL Q+ L G +
Sbjct: 117 SQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRLR--------------KKGENL 162
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVM 238
+N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I + + ++I +
Sbjct: 163 NNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIPIE 222
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLH+ N+ R+ ++PIN+ +PLE L Y + RITFEY+++ N S D
Sbjct: 223 LAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNISETD 281
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357
A L + +NLIP+N G E+ K I F +K + +R +G D
Sbjct: 282 ANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYNYLKNVRKVNVTLRQEKGSD 341
Query: 358 ILAACGQLKSLSKR 371
I ACGQL+ +K+
Sbjct: 342 IDGACGQLRQRNKK 355
>gi|120403214|ref|YP_953043.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
vanbaalenii PYR-1]
gi|205829819|sp|A1T787|RLMN_MYCVP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|119956032|gb|ABM13037.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium vanbaalenii
PYR-1]
Length = 365
Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats.
Identities = 118/371 (31%), Positives = 177/371 (47%), Gaps = 28/371 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + A+ ++G+P R Q+ Y R I D M+D+ VR
Sbjct: 16 MPPRHFADLDESGRAAAVAELGLPA----FRAKQLANQYYGRLIADPTQMTDLPAAVRER 71
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ E G + +L E+V + R T+C+SSQ G
Sbjct: 72 VADALFPTLFGAAREIECDSGETRKVL----WRAVDGTTFESVLMRYPDRNTVCISSQAG 127
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EIL QV A + L D G ++SN+V
Sbjct: 128 CGMACPFCATGQGGLKRNLSTAEILEQVRAASAELRD-------------RDGGRLSNVV 174
Query: 184 MMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N++ V ++ S G S R +T+ST G P I ++ +E V LA
Sbjct: 175 FMGMGEPLANYNRVVAAVRRITASSPNGFGISARSVTVSTVGLAPAIRKLADEKLNVTLA 234
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH ++LR+ LVP+N ++ ++ ++DA R+Y ++ RR++ EY +++ +ND P A
Sbjct: 235 LSLHTPDDELRDTLVPVNNRWKVDEVLDAARYYADVT-GRRVSIEYALIRDVNDQPWRAD 293
Query: 301 NLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L K L G +NLIP NP PG E+ S + F ++ G S +R RG +
Sbjct: 294 LLGKKLHGELGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGRE 353
Query: 358 ILAACGQLKSL 368
I AACGQL +
Sbjct: 354 IAAACGQLAAE 364
>gi|269120621|ref|YP_003308798.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
gi|268614499|gb|ACZ08867.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
Length = 357
Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats.
Identities = 132/370 (35%), Positives = 202/370 (54%), Gaps = 26/370 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++K ++ G+ + LE+ LLK+ + QI+ W++ + +F S+IS+E R+
Sbjct: 10 IIEKLNISGLKYDTLEKELLKLNF----KKYNVKQIFNWLHNKMEDNFDNFSNISKENRN 65
Query: 63 LLNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+L+++F I ++D IS + K+L + G V IE+V I K+R TLCVSSQ
Sbjct: 66 ILSKNFFIPEITLLDHLISENDNTEKFLFKLQ-----GNVLIESVLIGHKNRYTLCVSSQ 120
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC+L C FC T T K +NL EIL+Q + L G K+ N
Sbjct: 121 AGCALGCEFCATATMKFEKNLDISEILMQFYYVQKYLNQ--------------KGNKLDN 166
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
+V MGMGEP NFDNV S+ I + G + SKR T+STSG VP I + + + V LA
Sbjct: 167 VVFMGMGEPFLNFDNVMDSIDILNSIDGQNCSKRNFTVSTSGLVPYIEKFTDLDSQVNLA 226
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH+V+++ R+ ++P+N+KYPL+ L + Y + RI+FEY+++ N S DA
Sbjct: 227 VSLHSVNDEYRSKIMPVNKKYPLKDLKKSLLAYQKKTKK-RISFEYILIDDFNCSKNDAF 285
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K L+ +NLIP+NP G Y + F + ++ ++ +R +G DI A
Sbjct: 286 ELTKFLREFSCLVNLIPYNPVAGKSYATPSKTRQQEFYRILLKNNINATLRETKGQDIAA 345
Query: 361 ACGQLKSLSK 370
ACGQLK +
Sbjct: 346 ACGQLKVKRE 355
>gi|260494797|ref|ZP_05814927.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
3_1_33]
gi|260197959|gb|EEW95476.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
3_1_33]
Length = 358
Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats.
Identities = 128/378 (33%), Positives = 201/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L + I + ++ +IS D T K+L + G +E + + R T
Sbjct: 56 REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDK---GTIETVLLRHKDSKNKEIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LC+SSQVGC + CSFC TG +RNL+ EIL QV L
Sbjct: 113 LCISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
G ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I + + ++
Sbjct: 159 GETLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|291279341|ref|YP_003496176.1| hypothetical protein DEFDS_0948 [Deferribacter desulfuricans SSM1]
gi|290754043|dbj|BAI80420.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 360
Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats.
Identities = 129/370 (34%), Positives = 208/370 (56%), Gaps = 29/370 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K + EL+E + ++ R +Q++KWIY +G+ F M+D+ E
Sbjct: 1 MNH--KID--NLSLTELKEVVTQL----NEKPFRATQLFKWIYQKGVTSFDEMTDLPLEF 52
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R L ++FS +V++ S DG+ K L R IE+V + + R T C+S
Sbjct: 53 RKKLIENFSFTKLTVVEQLESQLDGSIKVLFRLEDDNF-----IESVLMFDGKRVTACLS 107
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+QVGC + C FC T L+RNLT+ EI+ Q++ R+L + + +
Sbjct: 108 TQVGCRMGCQFCNTAKIGLIRNLTSAEIIRQIIYLRNL--------------AETKKKPL 153
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+V MGMGEPL NFDN+ KSL I + L+FS R++T+ST G + + + + V +
Sbjct: 154 TNLVFMGMGEPLDNFDNLTKSLDIILNEEALNFSHRKVTVSTCGIMDKLNLLAKHYKVNI 213
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
AISL+AV+N +R+ L+P+N++YP+E +I+ + P + +RIT EYV++ G+N++ +DA
Sbjct: 214 AISLNAVTNKIRSKLMPVNKRYPIEEIINGIKKLP-IPKRKRITLEYVLIDGLNNTTKDA 272
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+K LKG+P K+NLI +N ++ + F + + +G ++ IR G DI
Sbjct: 273 NLLVKQLKGLPIKVNLILYNKTKLSDFHSPQLNYALNFQKTLINNGIATFIRKSFGQDIE 332
Query: 360 AACGQLKSLS 369
AACGQL +
Sbjct: 333 AACGQLYAKY 342
>gi|205355727|ref|ZP_03222497.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346504|gb|EDZ33137.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 335
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 133/347 (38%), Positives = 191/347 (55%), Gaps = 24/347 (6%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
R QI++WIY + +F MS++ +++R L Q+F + V + S DG+ K+L
Sbjct: 2 FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 61
Query: 93 PARCIGGPVEIET--------VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
V + +R T+CVSSQVGC CSFC T L RNL+A
Sbjct: 62 VDGLRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSA 121
Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
EI+ Q+L + R++ NIV MGMGEPL N NV K++ I
Sbjct: 122 GEIVGQILWIKK-------------QNNIPYERRV-NIVYMGMGEPLDNLKNVSKAVKIL 167
Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL 263
+ + GL+ S RR T+STSG I +G+ GV+LAISLHAV+++LR L+PIN+ Y +
Sbjct: 168 AQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNI 227
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI FNP G
Sbjct: 228 AAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEG 286
Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
Y ++ + F + + G + IR +GLDI AACGQLK +K
Sbjct: 287 SLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 333
>gi|110597428|ref|ZP_01385715.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
gi|110340972|gb|EAT59443.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
Length = 362
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 123/372 (33%), Positives = 188/372 (50%), Gaps = 22/372 (5%)
Query: 1 MNFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
M + ++I + EL+ A+ + P R +QI +W++ + F+ M+ +S+
Sbjct: 1 METMTTALPNIIDLSFPELQHAIASLDEP----SFRAAQIHQWLFSHQAKSFEEMTTLSR 56
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
+R L + FSI + ++VD S + + L + IETV IP ++R T C+
Sbjct: 57 TLRQKLAETFSISHLQLVDHLESTEESGDNLTEKILLKLPDNELIETVLIPAENRLTACL 116
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQ GC+ C+FC TG L RNLTA EI QV +++ + +K
Sbjct: 117 SSQAGCAFQCTFCATGKMGLHRNLTAGEIAGQVYALNAIV------------SMRKPDKK 164
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSI-ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
I+NIV MGMGEPL N+DN+ +S+ + + ++ S+++IT+ST G +P I ++G
Sbjct: 165 ITNIVFMGMGEPLMNYDNILESIETLTTKNYNVTLSQKKITISTVGVIPQIRKLGASGLK 224
Query: 237 VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
LA+SLHA R L+P+ K YPL L A Y + A +T Y++ KGINDS
Sbjct: 225 TKLAVSLHAAEQQKRESLMPVAAKLYPLNELGKALAGY-SSATAMPVTIVYMLQKGINDS 283
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
DA L + G KINLI +N + + F + + SG +R G
Sbjct: 284 LEDAKLLARFAHGFLCKINLIDYNSIINIRFKPVNSSSREVFQQYLIDSGLHVTVRKSYG 343
Query: 356 LDILAACGQLKS 367
I AACGQL +
Sbjct: 344 TTINAACGQLAT 355
>gi|300087719|ref|YP_003758241.1| Cfr family radical SAM protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527452|gb|ADJ25920.1| radical SAM enzyme, Cfr family [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 341
Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 181/368 (49%), Gaps = 35/368 (9%)
Query: 4 LKKE----SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
+ K +L+GM EL + +G R +Q+ +W+Y R M+++
Sbjct: 1 MDKPETTRTLLGMNTAELRQLAETLGQSA----FRGNQLAEWLYHRDAAAIAEMTNLPAA 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R+ L + + P ++ + S DGT K LL F ++ETV +P R + CVS
Sbjct: 57 FRYRLAECYPTGRPVVITRRQSDDGTLKLLLEF-----ADGEQVETVGLPYHDRYSCCVS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+Q GC + C+FC TG R L+A EI+ QVL GR++
Sbjct: 112 TQAGCPVGCAFCATGQGGYRRQLSAGEIVAQVLAVSR-----------------EAGRRV 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
++ MGMGEPL N+D K+L + D +G++ R +T+ST G VP I R+ E V
Sbjct: 155 DHVTFMGMGEPLLNYDATVKALHLLRDEVGIA--ARHLTVSTIGHVPGILRLARENLPVT 212
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLH R L+P + ++ A R + L+ RR+T EY +L G+ND P D
Sbjct: 213 LALSLHTPDEVTRRRLIPG-LRSTPAEIVTAGREHFALT-GRRLTVEYCLLDGVNDRPED 270
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L +L+G INLIPFNP + S + F ++ +G+ R RG DI
Sbjct: 271 ASALAVLLEGTGFHINLIPFNPTDDLPFRPSPATTVERFMNRLRAAGFEVTARVRRGADI 330
Query: 359 LAACGQLK 366
AACGQL+
Sbjct: 331 EAACGQLR 338
>gi|188995920|ref|YP_001930172.1| hypothetical protein PGN_2057 [Porphyromonas gingivalis ATCC 33277]
gi|259491992|sp|B2RMI0|RLMN_PORG3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|188595600|dbj|BAG34575.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 352
Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 136/363 (37%), Positives = 191/363 (52%), Gaps = 30/363 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK L+GM EEL L++G+P R Q+ +WIYVR DF M++ISQ R L
Sbjct: 9 KKVVLLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKL 64
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + + D + S DGT+K+L G +E+V IPE R TLC+SSQVGC
Sbjct: 65 AEIYDLGRYPWSDVQCSVDGTKKYLFPV-----GEGRFVESVLIPEGDRATLCISSQVGC 119
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG Q NL+A EIL Q+ +++N+V
Sbjct: 120 KMDCLFCMTGKQGWNGNLSAAEILNQIFSV-------------------DEAAELTNLVY 160
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N D V +S+ ++ G+ +S +RIT+ST G + R E LA+SLH
Sbjct: 161 MGMGEPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLH 219
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + R L+P + +P+ +D R Y S RR++FEY++ G+ND R A L
Sbjct: 220 SPFPEERRKLMPGEKAFPIMQTLDRIRAY-DFSGQRRVSFEYIVFDGLNDDMRHADELAA 278
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
IL+GIP +INLI F+ P SD + F + ++ GY+ IR RG DI AACG
Sbjct: 279 ILRGIPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGYTCTIRASRGEDIFAACGM 338
Query: 365 LKS 367
L +
Sbjct: 339 LST 341
>gi|256844888|ref|ZP_05550346.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
gi|256718447|gb|EEU32002.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
Length = 358
Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 128/378 (33%), Positives = 201/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L + I + ++ ++S D T K+L + G +E + + R T
Sbjct: 56 REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDK---GTIETVLLRHKDSKNREIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL Q+ L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + ++
Sbjct: 159 GETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILLDK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SEADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|154485074|ref|ZP_02027522.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC
27560]
gi|149734027|gb|EDM50146.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC
27560]
Length = 320
Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 121/347 (34%), Positives = 190/347 (54%), Gaps = 29/347 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +K+ + +EL++ L +G R QI+KWI++ ++ F M++IS+ +
Sbjct: 1 MVMTEKKDIKSYNLDELKQELANMG----EKPFRAGQIYKWIHIEKVQSFDEMTNISKNL 56
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R L++ F I+ E V IS DGTRK+L R G IE+V + ++C+S
Sbjct: 57 RETLDEQFEIVTLEPVRVLISKIDGTRKYLFRIK-----GGAVIESVLMRYHHGNSVCIS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+Q GC + C FC + L RNL E+L Q+ +G+ ++
Sbjct: 112 TQSGCRMGCRFCASTLNGLDRNLRPSELLEQIYEIEKNIGE-----------------RV 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
SNIV+MG GEPL NF+NV K L + SD GL+ S+R ITLST G VP + + +
Sbjct: 155 SNIVLMGSGEPLDNFENVTKFLELISDENGLNISQRNITLSTCGLVPRMKELANMHPQIT 214
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA +D R L+PI RKY + ++DAC++Y + RRITFEY ++ G+ND+ +
Sbjct: 215 LALSLHASDDDTRRELLPIARKYTIAEVLDACKYYFDKT-GRRITFEYSLVAGVNDTVEE 273
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
A L ++K + +NLIP NP +++ + +K + F +++ G
Sbjct: 274 AEKLSALVKNLNCHVNLIPVNPIKERDFVQTGKKAVERFKRVLEKIG 320
>gi|291166481|gb|EFE28527.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
Length = 345
Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 125/371 (33%), Positives = 191/371 (51%), Gaps = 30/371 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L M E+EE +L +G + R QI+ ++ +G+ M +S++ R L +
Sbjct: 3 VDLRSMEYYEVEEVVLNLG----EKKYRAKQIYNFL-AKGVSSIDEMYTLSKDFREKLKE 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I +I + S DGTRK+L+ G IETV + K+ ++C+S+QVGC
Sbjct: 58 RYYICKTDIYHKLESNLDGTRKYLIEL-----GDGNLIETVLMIYKNGPSICLSTQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + LVRNLT EI+ Q++ + LG+ +I+NIV+M
Sbjct: 113 MGCKFCASTVDGLVRNLTPGEIIGQMITVQKDLGE-----------------RIANIVIM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244
G GEP NFDN+ K L + + GL R IT+ST G VP I + I + LAISLH
Sbjct: 156 GSGEPFDNFDNLVKFLKLVHEDYGLQIGYRHITISTCGLVPKIREMEKLGIPINLAISLH 215
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
V + R ++PI + Y +E LI+A +HY ++ R+T+EY +++G+ DS +A L
Sbjct: 216 QVEQNKREEIMPIAKVYDIEELIEAGKHYANVTKR-RVTYEYALIEGVTDSLEEAHKLGS 274
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG + INLIP NP + + K + F + + + +R G DI ACGQ
Sbjct: 275 LLKGSLSLINLIPINPIKEKSFKKPNLKRVQAFQKVLLNYHIITTVRRELGSDINGACGQ 334
Query: 365 LKSLSKRIPKV 375
L+ K
Sbjct: 335 LRRDVINRDKR 345
>gi|163782714|ref|ZP_02177710.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881835|gb|EDP75343.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1]
Length = 349
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 137/367 (37%), Positives = 194/367 (52%), Gaps = 33/367 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ EEL E + +G+ + R Q+ KW+Y + DF M+D+ +E R LL F
Sbjct: 4 ITDYNLEELRERFVSLGLE----KYRAGQVLKWLYKKLTTDFSSMTDLPKEQRRLLEDTF 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
E +D + +RK+L R +ETV I E+ TLCVSSQVGC++ C
Sbjct: 60 RFHPLEKLDR-VDAPDSRKYLFRTH-----DGHIVETVLIRERDHLTLCVSSQVGCAVGC 113
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+FC T L RNLT+ EIL Q L + KI N+V MGMG
Sbjct: 114 TFCATAIDGLRRNLTSAEILDQFLQVQK-----------------DSPEKIRNVVFMGMG 156
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHA 245
EPL N+DNV+K+ I GL SKRR+T+STSG V + R+ E+ + LA+SL+A
Sbjct: 157 EPLANYDNVRKAAEIMVSPWGLDLSKRRVTVSTSGLVAQLRRMAEDPIMRELNLAVSLNA 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R ++PI RK L L++ YP L RRIT EYV++K +NDS RDA L ++
Sbjct: 217 PRQSTRESIMPITRKNTLSELMEVLVKYP-LPRYRRITLEYVLIKDLNDSKRDAEELAEL 275
Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
L+ K+NLIPFNP P Y + ++ F + + G S+ +R +G+D+ ACG
Sbjct: 276 LRRHRKRFKVNLIPFNPDPNLPYERPELTRVLNFQKVLWERGISTFVRFSKGVDVFGACG 335
Query: 364 QLKSLSK 370
QL++
Sbjct: 336 QLRAKRD 342
>gi|317505349|ref|ZP_07963277.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606]
gi|315663563|gb|EFV03302.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606]
Length = 348
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 131/379 (34%), Positives = 198/379 (52%), Gaps = 31/379 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN K++L+GM EL+EA +G+P QI KW+Y ++ M++IS+
Sbjct: 1 MNS-PKKALLGMTLYELKEACRALGMPA----FTGGQIAKWMYTHHVKQIDEMTNISKNN 55
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + ++I E +D + S DGT K+L +ETVYIPE R TLCVS
Sbjct: 56 RAKLAEAYTIGCNEAIDAQHSKDGTIKYLFPTH-----DGKFVETVYIPENDRATLCVSC 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG Q +LT +IL QV K++
Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLTTTDILNQVYSL-------------------PEVDKLT 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIV MG GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +A
Sbjct: 152 NIVFMGQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFLEESNCHVA 211
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH+ + R L+P + + ++ R+Y S+ RR++FEY++ GINDS A
Sbjct: 212 ISLHSPIAEQRAALMPAQKGMSISEIVSLLRNY-DFSHQRRLSFEYIVFGGINDSTTHAR 270
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++K+L G+ ++NLI F+ PG +D+K + + + + IR RG DI A
Sbjct: 271 EIVKLLNGLDCRVNLIRFHQIPGVPLHGADEKRMEELRDYLTSHDVFTTIRASRGQDIFA 330
Query: 361 ACGQLKSLSKRIPKVPRQE 379
ACG L S SK+I ++ ++
Sbjct: 331 ACGLL-STSKKIGEIRHEQ 348
>gi|296271697|ref|YP_003654328.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299]
gi|296095872|gb|ADG91822.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299]
Length = 355
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 124/371 (33%), Positives = 196/371 (52%), Gaps = 32/371 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+S+ +EL+E L R Q++ WIY + + M +I +++ L +
Sbjct: 2 QSIYDFTLDELKERLK--------PSFRAKQVYNWIYKKYANSYDEMKNIPNDLKEDLKE 53
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIPEKSRGTLCV 118
+++I +I+ ++ S DG+ K+L + V + + + + T+C+
Sbjct: 54 NYAIDILKIIKKEKSSDGSIKYLFKLHDGHTVETVFLLMREKQIGDDGVVEKGEKHTVCI 113
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
S+QVGC + C+FC T VRNLT EI+ Q++ +
Sbjct: 114 STQVGCKVGCTFCLTAKGGFVRNLTVGEIVAQIVNMKRDNNIDENKSL------------ 161
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
NIV MGMGEPL N+ N S+ + S+ GL ++RR T+STSG I ++G E G+
Sbjct: 162 --NIVFMGMGEPLDNYKNFVHSVKVFSEEEGLYINRRRQTVSTSGISSKIEKLGNENLGI 219
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLHAV ++LR+ L+P+N+ Y ++ +IDA + +P + +++ FEY+++K ND
Sbjct: 220 QLAISLHAVDDELRSELIPMNKAYNIKSIIDAVKKFP-VDARKKVMFEYLVIKDKNDDIA 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A L+ +L GI AK+NLI FNP+PG Y + K +V F + G IR +GLD
Sbjct: 279 SAKKLLSLLDGIKAKVNLIYFNPYPGTTYQRPESKKMVEFQNYLISKGLLCTIRESKGLD 338
Query: 358 ILAACGQLKSL 368
I AACGQLK
Sbjct: 339 ISAACGQLKEK 349
>gi|284992364|ref|YP_003410918.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM
43160]
gi|284065609|gb|ADB76547.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM
43160]
Length = 395
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 180/366 (49%), Gaps = 24/366 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + REE A+ ++G P R Q+ + Y RG+ D M+D+ VR L
Sbjct: 18 RHLADLTREEARAAVTELGQPA----FRADQLTRHFY-RGVTDPAQMTDLPAAVREELTG 72
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + TRK L R +E+V + R T+C+SSQ GC
Sbjct: 73 ALLPGLLTPVRTLSADGGRTRKTLWRLH-----DGALVESVLMRYPDRATVCISSQAGCG 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+A EI+ Q + +P ++SN+V M
Sbjct: 128 MACPFCATGQNGLTRNLSAAEIIGQ---------AVAAAAAMANGEVPGGPGRLSNVVFM 178
Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V+K+L + GL S+R +T+ST G VP I R+ EE V LA+S
Sbjct: 179 GMGEPLANYARVRKTLDALVTPAPHGLGLSQRSVTVSTVGVVPAIRRLTEEGLHVTLAVS 238
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVPIN ++ + ++ A Y + RR + EY +++ +ND P A L
Sbjct: 239 LHAPDDELRDTLVPINTRWKVGEVVAAADAYAERT-GRRYSVEYALIRDVNDQPERADLL 297
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L A +NLIP NP PG ++ S F ++ G + +R RG DI AC
Sbjct: 298 GRLLADRRAHVNLIPLNPTPGSKWDASPLPAQREFVARLRAHGVPTTVRDTRGQDIDGAC 357
Query: 363 GQLKSL 368
GQL +
Sbjct: 358 GQLAAA 363
>gi|303272039|ref|XP_003055381.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463355|gb|EEH60633.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 430
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 145/399 (36%), Positives = 207/399 (51%), Gaps = 42/399 (10%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV--RGIRDFQGMSDISQEVRHL 63
K SL GM +LE L +IG R +Q++ W+Y + + D + M+D+S R
Sbjct: 53 KVSLKGMRYADLERWLAEIG----EKPSRATQVFNWMYRPGKLVADVRDMADVSAAFREK 108
Query: 64 LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSS 120
L ++ E+ D + S DGT+K GG V + R T+CVSS
Sbjct: 109 LASLATVDGDLEMRDVRTSADGTKKVTYAL---ANGGGVVESVIIPSNVPGGRTTVCVSS 165
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q+GC++ C FC+T L RNLTA +I+ QV+ AR L S
Sbjct: 166 QLGCAMNCQFCFTAKMGLRRNLTAAQIVEQVVHARRLAEADDEAS--------------S 211
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+V MGMGEPL N D V ++ + D GL FSK ++T+STSG VP I R E LA
Sbjct: 212 NVVFMGMGEPLHNIDAVLAAVDVLLDDRGLGFSKNKVTVSTSGLVPEIERYLAESQGSLA 271
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGINDSP 296
+SL+A ++++R+ ++PINRKY LE L+ A R + R + FEY+ML+G+NDS
Sbjct: 272 VSLNATTDEIRSWIMPINRKYNLERLLGALRANFPRRDGGRHQREVFFEYIMLEGVNDSA 331
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
DA L+ I + +P K NLI FN G E+ CSD++ I+ F + + +G + IR RG
Sbjct: 332 EDADRLVAIARTLPCKFNLIYFNTHDGSEFRCSDRETILAFRDRVVAAGVTCTIRQSRGD 391
Query: 357 DILAACGQLKS------------LSKRIPKVPRQEMQIT 383
+ AACGQL S KR ++ EM+
Sbjct: 392 EEAAACGQLGSPDAMEDWKPSPPRMKRPKRLREMEMEAQ 430
>gi|260436262|ref|ZP_05790232.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109]
gi|260414136|gb|EEX07432.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109]
Length = 352
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 179/368 (48%), Gaps = 37/368 (10%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+G EL++ + G R Q+ WIY +G R ++ + R L +
Sbjct: 5 LLGRSAAELQDWAVAQG----QKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALLEGG 60
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + V ++ D T K LL IETV IP R T+CVSSQVGC +
Sbjct: 61 IDVGRLKEVHRSVATDATTKLLLSTE-----DGETIETVGIPTDQRLTVCVSSQVGCPMA 115
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L R+L EI+ QVL R + R+ S+IV MGM
Sbjct: 116 CRFCATGKGGLQRSLQTHEIVDQVLSVREAMD-----------------RRPSHIVFMGM 158
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
GEPL N V +++ +D +G+ +RRIT+ST G + ++ E LA
Sbjct: 159 GEPLLNSSAVLEAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELAMQRLGRAQFTLA 216
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LR L+P YP + L++ CRHY ++ RR++FEY++L +ND P A
Sbjct: 217 VSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVT-GRRVSFEYILLGELNDQPEHAA 275
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L + G + +NLI +NP E+ + I F ++R G + +R RGLD A
Sbjct: 276 ELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEVFRRVLERRGVAVSLRASRGLDQNA 335
Query: 361 ACGQLKSL 368
ACGQL+
Sbjct: 336 ACGQLRRQ 343
>gi|294785829|ref|ZP_06751117.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
gi|294487543|gb|EFG34905.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
Length = 358
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 128/378 (33%), Positives = 201/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L + I + ++ ++S D T K+L + G +E + + R T
Sbjct: 56 REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDK---GTIETVLLRHKDSKNREIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL Q+ L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + ++
Sbjct: 159 GETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|315453551|ref|YP_004073821.1| putative radical-SAM-proteins [Helicobacter felis ATCC 49179]
gi|315132603|emb|CBY83231.1| Putative radical-SAM-proteins [Helicobacter felis ATCC 49179]
Length = 356
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 124/373 (33%), Positives = 190/373 (50%), Gaps = 24/373 (6%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K SL + E + + G Q + W+Y R M ++ +
Sbjct: 1 MQSKPSLYALTLAEWQNYCTQHGF----RPFVAKQFYAWLYQRYA-SLDQMHNLPHAFKE 55
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE---KSRGTLCVS 119
+ F + E+++ + S D + K+L + V + E + + TLC+S
Sbjct: 56 AVCADFEVRPLEVLECQQSADKSVKYLFKTFDGHSFESVYMVMREAREGEAQEKITLCLS 115
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
Q+GC + C FC T VRNL A EI+ QV+ + P
Sbjct: 116 CQIGCKVGCVFCATAKGGFVRNLNAGEIVEQVVALKRAHQLEPTRGI------------- 162
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238
N+V MGMGEPL NF+ V +L I S GL+ + RRIT+STSG VP + + +GV
Sbjct: 163 -NLVFMGMGEPLHNFEQVVHALEILSTHEGLNIAPRRITISTSGVVPALQTLGALNLGVQ 221
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLHAV++ LR+ L+PIN+ Y L+ LI+A + +P L +R+ FEY+M+K +NDS
Sbjct: 222 LAISLHAVNDSLRSKLMPINKVYNLQALINALKAFP-LDKRKRVMFEYLMIKDVNDSLSH 280
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+++L G+ AKINLIP+N P ++ + + + F++ + + G IR +G DI
Sbjct: 281 AKELLRLLNGLKAKINLIPYNSTPHSKFERPELERVQAFADFLNQKGLLCTIRISKGQDI 340
Query: 359 LAACGQLKSLSKR 371
AACGQL+ +
Sbjct: 341 AAACGQLREQRLK 353
>gi|297626635|ref|YP_003688398.1| hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922400|emb|CBL56972.1| Hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 375
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 114/368 (30%), Positives = 174/368 (47%), Gaps = 27/368 (7%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
+ +E EA+ +G+P R QI + R D + +D+ VR +
Sbjct: 25 DLGVDERIEAVRALGLPA----FRAKQISTHWFSRCEHDPRQWTDLPAAVRDEVADKLFP 80
Query: 71 IYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
V + T K + +E+V + R T+C+SS+ GC++ C
Sbjct: 81 QLLTPVQALSADHGRTVKVAWQLH-----DGSLVESVLMRYPHRTTICISSEAGCAMNCP 135
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG L RNL+ EI+ QVL L + IP +I+N+V MGMGE
Sbjct: 136 FCATGQGGLQRNLSTAEIVGQVLDGARRLAN---------GEIPGGPGRINNVVFMGMGE 186
Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
P+ NF V ++ + GL S R +T+ST G VP I + + I LAISLHA
Sbjct: 187 PMANFKAVLGAVREITRPEPDGLGISARGVTVSTIGMVPRINELSDTGIPATLAISLHAP 246
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++LR+ LVP+N+ + ++ ++DA Y + R++ EY ++K IND A L + L
Sbjct: 247 DDELRDELVPLNKHFNIDAVLDAAWAYAENTKR-RVSIEYALIKDINDQSWRADLLARRL 305
Query: 307 KGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K +NLIP NP PG ++ S ++D F ++ +R RG +I AC
Sbjct: 306 KERGDWGWCHVNLIPLNPTPGSKWTASRREDEEAFVRHLENHHVPVTVRDTRGREIDGAC 365
Query: 363 GQLKSLSK 370
GQL + K
Sbjct: 366 GQLAAAVK 373
>gi|254776158|ref|ZP_05217674.1| hypothetical protein MaviaA2_16010 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 364
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 116/366 (31%), Positives = 179/366 (48%), Gaps = 28/366 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + A+ ++G+P R Q+ Y R I D + M+D+ +R +
Sbjct: 17 RHLADLDADGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I E G + L V +E+V + R T+C+SSQ GC +
Sbjct: 73 TMFPILLTAASEVTCDAGQTRKTL----WRALDGVTVESVLMRYPQRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V ++ G S R +T+ST G P I ++ +E GV LA+SL
Sbjct: 176 MGEPLANYARVVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 236 HAPDDELRDTLVPVNNRWKIAEALDAARYYADVT-GRRVSVEYALIRDVNDQPWRADLLG 294
Query: 304 -KILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++ + + +NLIP NP PG ++ S + F ++ +G S +R RG +I A
Sbjct: 295 QRLHRALGPLVHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREISA 354
Query: 361 ACGQLK 366
ACGQL
Sbjct: 355 ACGQLA 360
>gi|289450590|ref|YP_003475435.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289185137|gb|ADC91562.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 345
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 182/365 (49%), Gaps = 30/365 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K + +L +P R Q+ W+ RGI ++DIS+ +R
Sbjct: 1 MEQKPFIYDATTADLTAFCRANDVPL----YRVKQVEAWL-ARGINSPDDLTDISKSLRE 55
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L F+ S D T K++ R +E+V++ ++ ++C+S+Q
Sbjct: 56 KLASEFNFAGLVAERNIKSQLDATEKFVFRL-----ADGQCVESVFMQYRTGNSVCLSTQ 110
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C+FC + RNLTA E+ QV L + +IS+
Sbjct: 111 AGCRMGCTFCASTGIGFGRNLTAGELTAQVALIGRHRAE-----------------RISH 153
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+V+MG+GEPL N++ V K + ++ GL+ S R ITLST G V I ++ E + LA
Sbjct: 154 VVLMGIGEPLENYEEVVKFIRTVNNPQGLNISMRHITLSTCGLVDEIKKLAHENLPINLA 213
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHA ++ LR+ L+PI ++YPL LI A +Y + RRITFEY + +ND ++A
Sbjct: 214 ISLHAPNDVLRSQLMPIAKRYPLAQLIPAASYYAKQT-GRRITFEYALFADVNDRLQEAA 272
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K+L G+ +NLIP N +PG Y S + F + + G ++ +R G DI A
Sbjct: 273 ELSKLLHGLLCHVNLIPANEFPGSLYHRSSKTSTKNFLDYLTAHGITATVRRELGSDIAA 332
Query: 361 ACGQL 365
ACGQL
Sbjct: 333 ACGQL 337
>gi|237745020|ref|ZP_04575501.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
gi|229432249|gb|EEO42461.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
Length = 358
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 129/378 (34%), Positives = 201/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L + I + ++ +IS D T K+L + G +E + + R T
Sbjct: 56 REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDK---GTIETVLLRHKDSKNKEIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LC+SSQVGC + CSFC TG +RNL+ EIL QV L
Sbjct: 113 LCISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + ++
Sbjct: 159 GETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILLDK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|15805960|ref|NP_294660.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
radiodurans R1]
gi|81624900|sp|Q9RVT6|RLMN_DEIRA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|6458660|gb|AAF10513.1|AE001946_5 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 346
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 115/338 (34%), Positives = 170/338 (50%), Gaps = 22/338 (6%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
R Q+ +W++V+G+ F M+++ +R L + + ++ S DG+ K+L
Sbjct: 17 FRRKQLLEWVFVQGVGTFDAMTNLPAGLRAELESEYQLNPFRDIETVRSHDGSVKYLFTL 76
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL
Sbjct: 77 N-----DGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGKMGFGRNLTPGEIVGQVL 131
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
R+I N+V MGMGE L N++N + + L
Sbjct: 132 AVA--------------GGEGISPREIRNLVFMGMGEALLNYENSMAAARVLLHPDALGM 177
Query: 213 SKRRITLSTSGFVPNIARVGEEIG--VMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
SKRR+TLST G I R+ EE + LAISLHA + R ++P +E ++ A
Sbjct: 178 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGAANSIEEIMAAA 237
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
R Y ++ RR+T EY ML+G+ND A L L G+ + +NLIP NPW G +++ S
Sbjct: 238 RDYQAVT-GRRVTMEYTMLRGVNDHLWQAELLADRLDGLVSHVNLIPMNPWDGSDFVSSS 296
Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
++ I F + ++ G +R RG D AACGQL
Sbjct: 297 EEQIQAFYDALQDRGVDVSVRRSRGKDAGAACGQLALR 334
>gi|320101749|ref|YP_004177340.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC
43644]
gi|319749031|gb|ADV60791.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC
43644]
Length = 400
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 129/359 (35%), Positives = 191/359 (53%), Gaps = 26/359 (7%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
G L L + G P R+ Q+ +WI+ + R F M+D+ +R L +++
Sbjct: 36 GATLPGLTAWLAERGEPA----YRSDQVARWIFQKRARSFAVMTDLPAGLRLALESSWAV 91
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
++ + + DGT K LL IETV + E+ R T+CVSSQVGC + C F
Sbjct: 92 YQTRVIRRQTATDGTDKLLLECR-----DGRRIETVLMREEDRRTVCVSSQVGCGMGCVF 146
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C +G + + RNLT EI ++L AR LL + +++NIV+MGMGE
Sbjct: 147 CASGLKGVERNLTVGEITEELLHARDLLPEH---------------ERLTNIVVMGMGES 191
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249
L N +N+ +L GL S+R +T+ST G I R+ + LA+SLHA + +
Sbjct: 192 LANLENLIAALDRICSPSGLGLSQRAVTISTVGLPEKIKRLAALDRRYHLAVSLHAPTEE 251
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR+ LVPIN K L +++A HY ++ + +TFEYV+L GIND RDA +L+ +L G
Sbjct: 252 LRDQLVPINHKVGLRAVMEAADHYFAVTGRQ-VTFEYVLLGGINDRDRDARDLVALLAGR 310
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
A +NLIP+NP G Y +D+ F ++ G S +R +G I AACGQL+
Sbjct: 311 KAHVNLIPYNPVAGLPYERPAPRDLDRFVRRCRQGGLSVSVRKTKGKRIDAACGQLRRR 369
>gi|237753454|ref|ZP_04583934.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375721|gb|EEO25812.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 354
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 131/365 (35%), Positives = 197/365 (53%), Gaps = 24/365 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+++ L L G + R QI+ W+Y+R + DF+ M ++ +E++ L
Sbjct: 2 KDNIFSYSLNALGLKLESAGF----QKFRAKQIYHWLYIRYVEDFEAMDNLPKELKTYLK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F+ +I ++ S DG+ K+L + V ++ ++ + TLC+SSQVGC
Sbjct: 58 ETFTTTSAQICKQEKSLDGSVKYLFQAQDNLTYEAVFLKM----KEDKFTLCLSSQVGCK 113
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC T VRNL+ EI+ QVL + K NIV M
Sbjct: 114 VGCSFCLTAKGGFVRNLSTGEIVYQVLAIKK--------------AQNIPHNKAINIVYM 159
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
GMGEPL N DNV ++ I ++ GLS S RR T+STSG P I ++G +GV LAISLH
Sbjct: 160 GMGEPLDNLDNVTNTIKILAELDGLSISTRRQTISTSGIAPKIKKLGTLNLGVQLAISLH 219
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
AV + LR+ L+PIN+ Y ++ +ID +P + + +R+ FEY+++ G+ND A L+
Sbjct: 220 AVDDKLRSELMPINKAYNIQAVIDEVVQFP-IDSRKRVMFEYLVIDGLNDGLDSAKKLVA 278
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L + AK+NLI FNP G Y + + F E + + G IR +GLDI AACGQ
Sbjct: 279 LLNKLKAKVNLIYFNPHEGSIYKRPSAEKVEAFREFLLKKGLLCTIRESKGLDISAACGQ 338
Query: 365 LKSLS 369
L+
Sbjct: 339 LRERE 343
>gi|257066169|ref|YP_003152425.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548]
gi|256798049|gb|ACV28704.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548]
Length = 341
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 192/365 (52%), Gaps = 30/365 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L +ELEE K G + R Q+++ I+V + DF+ MSD+S+++R L++ +
Sbjct: 5 LNDKSIKELEEIFTKEGY----QKFRAKQVYRQIHVNKVNDFKLMSDLSKDMREKLSEKY 60
Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
++ E +S D T+K+L IE V++ R T+C+SSQVGC +
Sbjct: 61 DFPKMKVEKEFVSELDSTKKYLFSL-----ADGNIIEAVFMDYDKRKTICISSQVGCRMG 115
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC + RNL+A E++ +V L GD I+NIV+MG+
Sbjct: 116 CKFCASTKNGRERNLSAGELIEEVYALERLNGD------------------INNIVIMGI 157
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL N++N++K + I +D G + S R ITLSTSG P I ++ + V LA+SLH
Sbjct: 158 GEPLDNYENIRKFIEIITDEKGRNLSHRSITLSTSGLSPMIRKLADSGLDVNLAVSLHYA 217
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+D R +PI KY +E L++A +Y + R++FEYV++ G+N+ D NL +L
Sbjct: 218 DDDKRRKFMPIANKYSIESLMEATDYYLDRTKR-RVSFEYVVIDGVNNLDSDVSNLTSLL 276
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
KG INLIP NP Y + F + + + ++ IR G DI A+CGQL+
Sbjct: 277 KGKNVHINLIPLNPIEEFSYDRPKSTALRDFRDKLLKKKLNATIRKSMGSDIDASCGQLR 336
Query: 367 SLSKR 371
+ R
Sbjct: 337 NNYAR 341
>gi|319441379|ref|ZP_07990535.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
variabile DSM 44702]
Length = 370
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 119/374 (31%), Positives = 182/374 (48%), Gaps = 26/374 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + +E++ A+ G+P R +QI + Y R D M+D+ + +R
Sbjct: 16 MPPTHLADLTDDEVKAAVKDAGLPG----FRANQIARQYYGRLEGDPMAMTDLPENLRST 71
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + V + TRK L + +E+V + R TLC+SSQ
Sbjct: 72 VKDTLFPTLMDPVRHISCDEGQTRKTLWKLHDST-----LLESVLMRYPDRATLCISSQA 126
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A + D ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSTGEIVEQVRAAARAMRDGDVEGGEG---------RLSNI 177
Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
V MGMGEPL N+ V ++ G S+R IT+ST G P I ++ + ++ + L
Sbjct: 178 VFMGMGEPLANYKRVVAAIKRITSPSPEGFGISQRNITVSTVGLAPAIRKLADEDMHMRL 237
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ +E ++DA +Y S RR++ EY ++K +ND P A
Sbjct: 238 AVSLHCPDDELRDTLVPVNNRWSIEEVLDAAAYYAEKS-GRRVSIEYALIKEVNDHPWRA 296
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K LK +NLIP NP PG E+ S + F + G + +R RG
Sbjct: 297 DLLGKRLKKKLGNQVHVNLIPLNPTPGSEWDASPKPVQDEFVRRVNEQGVACTVRDTRGQ 356
Query: 357 DILAACGQLKSLSK 370
+I AACGQL + +
Sbjct: 357 EIAAACGQLAAEER 370
>gi|113955511|ref|YP_731551.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
CC9311]
gi|123132407|sp|Q0I7M1|RLMN_SYNS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|113882862|gb|ABI47820.1| radical SAM enzyme, Cfr family protein [Synechococcus sp. CC9311]
Length = 346
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 37/370 (10%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
L+G + ELEE + G P R Q+ W+Y +G+RD QG++ + + R L N+
Sbjct: 5 LLGRSKSELEEWAVAQGQPA----FRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEG 60
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
S+ + ++S D T K LL +ETV IP R T+CVSSQVGC +
Sbjct: 61 VSVGRLHEQERRVSADATTKLLL-----GTEDGETLETVGIPTDQRLTVCVSSQVGCPMA 115
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L R+L EI+ QVL R ++ R+ S++V MGM
Sbjct: 116 CRFCATGKGGLQRSLAGHEIVAQVLSIREVM-----------------ERRPSHVVFMGM 158
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
GEPL N + V +S+ +D +G+ +RRIT+ST G + R+ + LA
Sbjct: 159 GEPLLNIEAVLESIRCLNDDLGIG--QRRITVSTVGVPHTLPRLADLALKQLGRAQFTLA 216
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LR L+P + YP + L+D CR+Y + RR++FEY++L G+ND P A
Sbjct: 217 VSLHAPNQALREELIPTAKTYPYDALLDDCRYYLNKT-GRRVSFEYILLGGVNDHPHHAS 275
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L + G + +NLI +NP E+ + I F ++R G + +R RGLD A
Sbjct: 276 ELADRVGGFQSHVNLIAYNPIEEEEFQRPTTQRIEGFRRVLERRGVAVSLRASRGLDQDA 335
Query: 361 ACGQLKSLSK 370
ACGQL+ +
Sbjct: 336 ACGQLRRNRR 345
>gi|189500366|ref|YP_001959836.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1]
gi|254807163|sp|B3EJF5|RLMN_CHLPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|189495807|gb|ACE04355.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1]
Length = 362
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 124/379 (32%), Positives = 189/379 (49%), Gaps = 29/379 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K ++ R+EL + + +G P R QI +W++ + DF+ M +IS +R L
Sbjct: 4 SKTNIKAYTRQELRDTIAALGEPA----YRADQIHRWLFSDWVTDFEKMKNISASLREEL 59
Query: 65 NQHFSIIYPE-----IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
++ + I I + +S T K+L+ + +ETV IP R T+CVS
Sbjct: 60 SRRYVIPSCSFENEAIEERSVSAPETSKFLVGLHDDEM-----VETVLIPSPDRHTVCVS 114
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC L C+FC TG RNL A EI+ QVLL LGD S +
Sbjct: 115 SQVGCPLRCTFCATGYMGFTRNLLASEIVEQVLLVNERLGD------------RSPDNHV 162
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
+N+V MGMGEPL N +NV ++ ++ S S++RIT+ST G +P I + +
Sbjct: 163 TNMVFMGMGEPLLNLNNVFDAIETLTNQSYNFSLSRKRITISTVGLIPQIGELARSGLSI 222
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LAISLHA + R L+P+ +++ LE L A Y + +T Y++++G+ND+ +
Sbjct: 223 KLAISLHAADQEKRTSLIPVAKEHTLEELRHALHEYADMV-KEPVTLVYMLIEGVNDADQ 281
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA+NLI+ +G KINLI +N ++ + F + +G +R +G
Sbjct: 282 DAINLIRFAQGFLCKINLIDYNCIVNVKFNPVKAEKRDRFIHTLVNAGVHVTVRKSQGAS 341
Query: 358 ILAACGQLKSLSKRIPKVP 376
I AACGQL K
Sbjct: 342 IDAACGQLALQKKNKTASR 360
>gi|294674247|ref|YP_003574863.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23]
gi|294472979|gb|ADE82368.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23]
Length = 357
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 116/377 (30%), Positives = 194/377 (51%), Gaps = 40/377 (10%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K+ L+GM EL++ + ++G+P + +QI KW+Y + + M+++S+ R L
Sbjct: 4 EKKVLLGMQPGELQQVVTELGMP----KFTAAQIAKWLYQQHVGSIADMTNLSKANREKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
+ + + +D + S DGT K+L + +ETVYIPE+ R
Sbjct: 60 AEQYEVGSMAPIDCQRSVDGTIKYLFPTRS-----GKFVETVYIPERRRVGEQGSGIGDR 114
Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
TLCVS QVGC + C FC TG Q +LTA +IL Q+
Sbjct: 115 ATLCVSCQVGCKMNCLFCQTGKQGFEGSLTAADILNQIYAL------------------- 155
Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
++NIV MG GEP+ N D + ++ + + G ++S RRIT+S+ G + R +
Sbjct: 156 PERDTLTNIVFMGQGEPMDNLDAILQATQVLTADWGYAWSPRRITVSSVGVKNKLKRFLD 215
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E +AIS+H+ + R +L+P ++ + +ID + Y S+ RR +FEY+ G+N
Sbjct: 216 ESECHVAISMHSPLPEQRQMLMPAEKQMSITEVIDLLKQY-DFSHQRRCSFEYICFAGLN 274
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D+ A ++K+++G+ ++NLI F+ PG + +D+K + + + G + IR
Sbjct: 275 DTTMHAREIVKLVRGLDCRVNLIRFHEIPGVDLPGADEKRMEALRDYLTAHGVFTTIRAS 334
Query: 354 RGLDILAACGQLKSLSK 370
RG DI AACG L + K
Sbjct: 335 RGQDIFAACGLLSTAKK 351
>gi|332295839|ref|YP_004437762.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium
narugense DSM 14796]
gi|332178942|gb|AEE14631.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium
narugense DSM 14796]
Length = 353
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 137/364 (37%), Positives = 205/364 (56%), Gaps = 25/364 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K S + ELE+ +G + R +Q++ W+Y I DF MS++S +R L
Sbjct: 1 MNKRSFFELSFSELEKFFTDLGF----SKYRANQVFSWVYKNNIYDFMQMSNLSLNLRDL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ F + +P+I S D + K+LL G IETV+I K+R T+C+SSQ+G
Sbjct: 57 LSSSFDLSFPKIQSTVESADNSFKFLLHL-----GENDFIETVFINHKNRNTICISSQIG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C C TG RNL EI+LQV+ + + G KI NIV
Sbjct: 112 CPVGCVMCSTGKIGFKRNLKVSEIVLQVMAVENFVRSKMG--------------KIDNIV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEP+ NFDNV K++ I +D G SFS RRI +STSGFV I ++ E + LA+S
Sbjct: 158 FMGMGEPMLNFDNVIKAIKILTDKNGKSFSPRRIVISTSGFVDGIKKLKEVGLPIKLAVS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++++R+ L+PIN+ + + LI A Y L++ RR+T+EYV+++ INDS +D + L
Sbjct: 218 LHATTDEIRSKLIPINKTFGISELIKASEEY-ALASKRRVTYEYVLMESINDSDQDIIRL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LKG+ A +NL+ +N + ++ + I F + + G + IR +G DI AC
Sbjct: 277 KDLLKGLHAHVNLVKYNQSLSNVRIKTNIRRIKLFEKMLNNFGIKTTIRFSKGEDINGAC 336
Query: 363 GQLK 366
GQL
Sbjct: 337 GQLA 340
>gi|19703861|ref|NP_603423.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|81590892|sp|Q8RFZ9|RLMN_FUSNN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|19714019|gb|AAL94722.1| Florfenicol resistance protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 358
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 29/374 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + R +L
Sbjct: 4 EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKDREIL 59
Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVS 119
+ I + ++ ++S D T K+L GG +E + + R TLCVS
Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGTIETVLLRHKDSKNKEIRNTLCVS 116
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + CSFC TG +RNL+ EIL Q+ L G +
Sbjct: 117 SQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRLR--------------KKGENL 162
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVM 238
+N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I + + ++I +
Sbjct: 163 NNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIPIE 222
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLH+ N+ R+ ++PIN+ +PLE L Y + RITFEY+++ N S D
Sbjct: 223 LAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNISETD 281
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357
A L + +NLIP+N G E+ K I F +K + +R +G D
Sbjct: 282 ANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYIYLKNVRKVNVTLRQEKGSD 341
Query: 358 ILAACGQLKSLSKR 371
I ACGQL+ +K+
Sbjct: 342 IDGACGQLRQRNKK 355
>gi|256026775|ref|ZP_05440609.1| florfenicol resistance protein [Fusobacterium sp. D11]
gi|289764771|ref|ZP_06524149.1| radical SAM family enzyme [Fusobacterium sp. D11]
gi|289716326|gb|EFD80338.1| radical SAM family enzyme [Fusobacterium sp. D11]
Length = 358
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 128/378 (33%), Positives = 201/378 (53%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFGEMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L + I + ++ +IS D T K+L + G +E + + R T
Sbjct: 56 REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDK---GTIETVLLRHKDSKNKEIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL Q+ L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTIERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
G ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I + + ++
Sbjct: 159 GETLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|228470999|ref|ZP_04055844.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3]
gi|228307396|gb|EEK16410.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3]
Length = 341
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 124/363 (34%), Positives = 187/363 (51%), Gaps = 30/363 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
++G +L E + +G+P + QI W+Y + + + M+++S++ R LL H+
Sbjct: 7 ILGKTPAQLTELAVGLGLP----KYTGRQIADWLYQKHVSSWDEMTNLSKKARALLASHY 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I ++ S DGT K+L G +ETV IPE R TLCVSSQ GC + C
Sbjct: 63 EIGRAAPHLQQTSRDGTVKYLFA------AGGGFVETVMIPEGDRATLCVSSQRGCKMNC 116
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG Q NL+ EIL Q+L +++NIV MGMG
Sbjct: 117 LFCMTGKQGFGANLSTSEILNQILSV-------------------PEVNELTNIVFMGMG 157
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EP+ N D + + ++ +D GL+ S +RIT+ST G P + R EE LAISLH +
Sbjct: 158 EPMDNIDTLLQVITCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLS 217
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L
Sbjct: 218 EERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLAQ 276
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ +NLI ++ P + SD + + + +G + IRT RG DI AACG L +
Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDWLCEAGIPTTIRTSRGEDISAACGMLSTQ 336
Query: 369 SKR 371
++
Sbjct: 337 EQQ 339
>gi|325001872|ref|ZP_08122984.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia sp.
P1]
Length = 369
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 116/368 (31%), Positives = 177/368 (48%), Gaps = 27/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + + ++G+P + R Q+ + + R D + MSD+ + R L
Sbjct: 18 RHLADVDPADRAAVAAELGLP----KFRLDQLARHYFGRLTADVEEMSDLGADARQRLAA 73
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + ++ TRK L R V E+V + R T+C+SSQ GC +
Sbjct: 74 LLPPLVTPLTEKACDDGATRKTLWR-----GHDGVLAESVLMRYPDRATVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV ++SN+V MG
Sbjct: 129 ACPFCATGQGGLQRNLSTGEIVDQV----------RRAAAAARDGALDEPARLSNVVFMG 178
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ V ++ G S R +T+ST G VP I R+ EE + V LAISL
Sbjct: 179 MGEPLANYKRVVAAVRRITSPAPDGFGISARGVTVSTVGLVPAIDRLREEGVPVTLAISL 238
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ + ++DA R Y + RR++ EY +++ +ND P A L
Sbjct: 239 HCPDDELRDTLVPVNNRWKVSEVLDAGRRY-ATTTGRRVSIEYALIRDVNDQPWRADMLG 297
Query: 304 KILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K+L+ +NLIP NP PG E+ S + F ++ +G + +R RG +I
Sbjct: 298 KVLRQHIGTSRVHVNLIPLNPTPGSEWDASPKPVEEEFVRRVRATGVACTVRDTRGQEID 357
Query: 360 AACGQLKS 367
AACGQL +
Sbjct: 358 AACGQLAA 365
>gi|284929286|ref|YP_003421808.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A]
gi|284809730|gb|ADB95427.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A]
Length = 341
Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 191/368 (51%), Gaps = 32/368 (8%)
Query: 6 KES-LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+ L+G EEL + + G P R Q+ +W+Y +GI+ + +S + R +
Sbjct: 4 KQDILLGKSIEELTNWVEERGQPN----YRGKQLHQWLYHKGIKSLEEVSVFPKNWRKEI 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + I ++ D TRK+LL + IETV IP R T+CVSSQVGC
Sbjct: 60 AD-YPVGRSSINQLIVAPDKTRKYLLNLQ-----DGLIIETVGIPTSKRLTVCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG RNLT EI+ Q+L + +++S++V
Sbjct: 114 PMKCDFCATGKGDFKRNLTCAEIIDQILTVQEDF-----------------QQRVSHVVF 156
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEPL N + K++ I + +G+ +R +T+ST G I + A+SL
Sbjct: 157 MGMGEPLLNIKEIIKAIKIINQDIGIG--QRSLTISTVGIPEKIIEFANHKLQITFAVSL 214
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR L+P ++ Y L LI+ C+ Y ++ R+TFEY++L+ +NDS A+ L
Sbjct: 215 HASNQILREKLIPTSKFYTLSSLINDCKKYVEITKR-RLTFEYILLEEVNDSLEQAVELA 273
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG +NLIP+NP +Y S + I F +++ G ++ IR RGL+ AACG
Sbjct: 274 KLLKGFQNHVNLIPYNPIEEVKYKRSSPQRIKAFCYQLEKYGITTSIRYSRGLETHAACG 333
Query: 364 QLKSLSKR 371
QL++ +
Sbjct: 334 QLRASYHK 341
>gi|86742258|ref|YP_482658.1| ribosomal RNA large subunit methyltransferase N [Frankia sp. CcI3]
gi|123764529|sp|Q2J713|RLMN_FRASC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|86569120|gb|ABD12929.1| 23S rRNA m(2)A-2503 methyltransferase [Frankia sp. CcI3]
Length = 421
Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats.
Identities = 123/378 (32%), Positives = 180/378 (47%), Gaps = 26/378 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRHLL 64
L + R+E + + +G P R Q+ + Y R + + M+D+ + R L
Sbjct: 36 RHLADLTRQERRDVAVSLGQPA----FRADQVARHYYARLIAADEPEAMTDLPERDRQPL 91
Query: 65 NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
V DG TRK R +E+V + R T+CVSSQ G
Sbjct: 92 LDALLPRLLVPVRTLSCDDGLTRKTAWRTV-----DGASLESVIMRYPDRATVCVSSQAG 146
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV+ A +L + ++SN+V
Sbjct: 147 CGMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLR---------RRELAGGETRLSNVV 197
Query: 184 MMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V +L + GL S R +T+ST G VP I R+ E V LA
Sbjct: 198 FMGMGEPLANYAAVIAALRRLTAHPPEGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTLA 257
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LRN LVPIN ++P+ ++ A Y ++ RR++ EY ++ G+ND A
Sbjct: 258 VSLHAPDDVLRNELVPINTRWPVVEVLAAAWEYAEVT-GRRVSVEYALIDGVNDDVGRAD 316
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +L G A +NLIP NP G + S F ++ G + +R RG +I A
Sbjct: 317 ALADLLVGRLAHVNLIPLNPTGGSSWRASAPAGQRAFVRRLRDRGIVTTVRDTRGREIAA 376
Query: 361 ACGQLKSL-SKRIPKVPR 377
ACGQL + + + + R
Sbjct: 377 ACGQLAAEPAGKPERTDR 394
>gi|150006853|ref|YP_001301596.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
distasonis ATCC 8503]
gi|205829794|sp|A6L8G0|RLMN_PARD8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|149935277|gb|ABR41974.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 343
Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats.
Identities = 131/367 (35%), Positives = 182/367 (49%), Gaps = 29/367 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ K L+GM EEL+ ++G+P Q+ WIY + I M++I+ R
Sbjct: 1 MVDKRQLLGMTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL F I + + S DGT K+L G +E+VYIP R TLCVSSQV
Sbjct: 57 LLEDSFEIGAYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q NLTA +IL Q+ ++NI
Sbjct: 112 GCKMNCLFCMTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+S
Sbjct: 153 VFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ R L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L
Sbjct: 213 LHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEAL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L GIP ++NLI F+ P SD + F + + G IR RG DI AAC
Sbjct: 272 SCLLGGIPCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAAC 331
Query: 363 GQLKSLS 369
G L +
Sbjct: 332 GMLSTAK 338
>gi|86608506|ref|YP_477268.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|123751708|sp|Q2JMN2|RLMN_SYNJB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|86557048|gb|ABD02005.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 352
Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats.
Identities = 131/372 (35%), Positives = 186/372 (50%), Gaps = 36/372 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+G L++ + G P R Q+ WIY +GIR + ++ + R + Q
Sbjct: 6 IPLLGQSLSALKDWAVAQGQPA----YRGQQLHAWIYQKGIRSLEQVTVFPRAWREAV-Q 60
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + IV + DGT K+LL IETV IP R T+CVSSQVGC +
Sbjct: 61 SYPVGRSRIVQRTEARDGTVKFLLGL-----ADGQLIETVGIPTAKRLTVCVSSQVGCPM 115
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL EIL QVL + GR++S++V MG
Sbjct: 116 ACDFCATGKMGYRRNLELHEILDQVLTVQEDF-----------------GRRVSHVVFMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
MGEPL N D V +++ + +G+ +R ITLST G IA + + ++ V LA+SLHA
Sbjct: 159 MGEPLLNRDTVVQAIRSLNQDIGIG--QRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHA 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ DLR L+P YPL+ LI CR Y L RR++FEY +L G+ND P A L ++
Sbjct: 217 PNQDLRQRLIPSASHYPLDTLIQDCRDYM-LRTGRRVSFEYTLLSGVNDLPIHARQLAQL 275
Query: 306 LKG-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + +NLIP+NP +Y + F +++ + +R RGLD A
Sbjct: 276 LQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNA 335
Query: 361 ACGQLKSLSKRI 372
ACGQL+ R
Sbjct: 336 ACGQLRGSFLRS 347
>gi|238019374|ref|ZP_04599800.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748]
gi|237864073|gb|EEP65363.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748]
Length = 348
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 195/368 (52%), Gaps = 28/368 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EEL+ I + R Q+ +IY R + DFQ M+ +E+R L+ +
Sbjct: 4 LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYVFDFQDMTQFPKELRQWLSDNC 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I P ++ E +S DG + +L + +E V + + ++CVSSQVGC++ C
Sbjct: 60 IISLPTLITESVSPDGKTRKIL----VEMIDQSRVEAVLMEQHYGYSVCVSSQVGCAMGC 115
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC + L R+LTA EI+ QV++ +I ++V+MG G
Sbjct: 116 VFCASTQGGLYRDLTAAEIIGQVVI-----------------FGALTKEQIHSVVVMGAG 158
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N+DNV ++L + D + + S R++T+ST G+VPNI ++ +E + LA+SLHA +
Sbjct: 159 EPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHATN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
N++R ++P+ +Y L ++DA ++Y + RRITFEY+++ IN S +A L +I K
Sbjct: 219 NEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSINASMEEAHALGEICK 277
Query: 308 GIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
P +NLIP N E ++ TF + + G S +R G I AACGQLK
Sbjct: 278 DFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVASYGVSVTVRKEMGDAIQAACGQLK 337
Query: 367 SLSKRIPK 374
+ R +
Sbjct: 338 AAHGRKKE 345
>gi|269797912|ref|YP_003311812.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008]
gi|269094541|gb|ACZ24532.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008]
Length = 348
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 195/368 (52%), Gaps = 28/368 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EEL+ I + R Q++ +IY R I DF+ M+ +++R LN +
Sbjct: 4 LLGKSLEELQSIFKTHNI----QKFRAKQLFDYIYHRYIFDFEDMTQFPKDLRQWLNDNC 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I P ++ E I+ DG + +L + +E V + + ++CVSSQVGC++ C
Sbjct: 60 VISLPTLITESIAPDGKTRKIL----VEMTDQSRVEAVLMEQHYGYSVCVSSQVGCAMGC 115
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC + L R+LT EI+ QV++ +I ++V+MG G
Sbjct: 116 VFCASTQGGLYRDLTVAEIIGQVVI-----------------FGALTKEEIHSVVVMGAG 158
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N+DNV ++L + D M + S R++T+ST G+VPNI ++ +E + LA+SLHA +
Sbjct: 159 EPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEALPITLALSLHATN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
N++R ++P+ +Y L ++DA ++Y + RR+TFEY+++ +N S +A L KI K
Sbjct: 219 NEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASMDEAHALGKICK 277
Query: 308 GIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
P +NLIP N E ++ TF + + G S +R G I AACGQLK
Sbjct: 278 DFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQLK 337
Query: 367 SLSKRIPK 374
+ R +
Sbjct: 338 AAHGRKKE 345
>gi|78778287|ref|YP_394602.1| hypothetical protein Suden_2093 [Sulfurimonas denitrificans DSM
1251]
gi|123727504|sp|Q30NR4|RLMN_SULDN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78498827|gb|ABB45367.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
1251]
Length = 356
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 200/374 (53%), Gaps = 32/374 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL+ +EL+ R QI+ W+Y + F M +I Q+++ L
Sbjct: 2 KPSLLDFRLKELQA--------NIKPSFRAKQIYGWLYHNYAQSFDDMKNIPQQLKDELA 53
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC--------IGGPVEIETVYIPEKSRGTLC 117
+ + + +IV +++S DGT K+L + E + ++++ T+C
Sbjct: 54 KSYVVNLLKIVKKELSNDGTIKYLFELQDGKTIETVWLKMKDEQIDEEGCVTQEAKYTIC 113
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VS+QVGC + C+FC T R+LTA EI+ QV+ +
Sbjct: 114 VSTQVGCKVGCAFCLTAKGGFTRDLTAGEIVAQVVALKKD--------------NDHKHN 159
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236
++ NIV MGMGEPL N DN+ +++ I + GL S +R T+STSG I R+G ++G
Sbjct: 160 RMINIVYMGMGEPLDNLDNLSRAIEIFKEEDGLCISGKRQTVSTSGLSNKIDRLGEMDLG 219
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V +AISLHAV ++LR L+P+N+ + + +I+A + +P + +R+ FEY+++K ND
Sbjct: 220 VHIAISLHAVDDELRTELIPMNKAHNISSIIEAVKRFP-IDTRKRVMFEYLVIKNKNDDL 278
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L+K+L GI AK+NLI FNP+P Y + D++ F E + G IR +G+
Sbjct: 279 GSAKKLVKLLSGIKAKVNLIYFNPYPDTPYERPQKSDMIAFQEYLINHGLLCTIRDSKGI 338
Query: 357 DILAACGQLKSLSK 370
DI AACGQLK ++
Sbjct: 339 DISAACGQLKEKTQ 352
>gi|309389025|gb|ADO76905.1| 23S rRNA m(2)A-2503 methyltransferase [Halanaerobium praevalens DSM
2228]
Length = 347
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 20/365 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L + R EL E L K G P R Q++ W+Y GI + M +I +++R L+
Sbjct: 2 KDLKELTRNELIEDLKKAGFPA----YRGEQVFNWLYKNGISKTEEMKNIPKKMRSYLDN 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++++ + ++ DGT K+L + V + PE R + C+S+QVGC L
Sbjct: 58 NYNLNNLKESKRSVAVDGTVKYLWQLNDGENIEGVYLP---FPESGRHSACISTQVGCGL 114
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG L RNLT EI+ QVL + + E ++SN+V MG
Sbjct: 115 GCSFCATGIDGLKRNLTTGEIVEQVLEIQKDISGSNFAEP-----------RLSNLVFMG 163
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
MGEPL NFDN+ +++ I + + GL+ R++T+ST+G VP I ++ + + LAISLHA
Sbjct: 164 MGEPLANFDNLMQAVEILNSNQGLNIGMRKMTISTAGLVPEIKKLAKVNDQIGLAISLHA 223
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ LRN ++PIN+KY + L+ Y + RR+TFEYV++ +NDSP ++ L ++
Sbjct: 224 PNDRLRNKIMPINKKYNINQLLKTVIDYIEKT-GRRVTFEYVLMDSVNDSPELSVQLSEL 282
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GI +NLIP NP P QK I +F + + +G +R G I AACGQL
Sbjct: 283 LRGINCHVNLIPANPVPELGIERPVQKVIDSFYDTLVNNGIQVSLRKEMGSQIEAACGQL 342
Query: 366 KSLSK 370
K K
Sbjct: 343 KRKEK 347
>gi|88807336|ref|ZP_01122848.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805]
gi|88788550|gb|EAR19705.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805]
Length = 351
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 127/373 (34%), Positives = 187/373 (50%), Gaps = 37/373 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++L+G+ ELE + G R Q+ W+Y +G RD Q ++ + + R L
Sbjct: 8 KTLLGLGSSELERWAVTQGQSA----FRGRQLHDWLYAKGARDLQEITVLPKSWRASLQD 63
Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
SI + D K++ D T K LL +ETV IP R T+CVSSQVGC
Sbjct: 64 SGVSIGRLKEQDRKVAADATTKLLL-----ATDDGETLETVGIPTDQRLTVCVSSQVGCP 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L R+L EI+ QVL R ++ R+ S++V M
Sbjct: 119 MACRFCATGKGGLQRSLYTHEIVAQVLSVREVM-----------------QRRPSHVVFM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238
GMGEPL N + V S+ +D +G+ +RRIT+ST G + ++ E
Sbjct: 162 GMGEPLLNIEAVLDSIRCLNDDLGIG--QRRITVSTVGVPRTLPKLAELAMERLGRAQFT 219
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA + LR L+P YP + L+D CRHY ++ RR++FEY++L G+ND
Sbjct: 220 LAVSLHAPNQTLREELIPTAHAYPYDALLDDCRHYLAIT-GRRVSFEYILLGGLNDHAAH 278
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L + G + +NLI +NP E+ + I F ++ G + +R RGLD
Sbjct: 279 AEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLEGRGVAVSLRASRGLDQ 338
Query: 359 LAACGQLKSLSKR 371
AACGQL+ ++
Sbjct: 339 DAACGQLRRSRQQ 351
>gi|78188796|ref|YP_379134.1| hypothetical protein Cag_0825 [Chlorobium chlorochromatii CaD3]
gi|123770876|sp|Q3ASD4|RLMN_CHLCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78170995|gb|ABB28091.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium chlorochromatii
CaD3]
Length = 366
Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats.
Identities = 121/370 (32%), Positives = 179/370 (48%), Gaps = 22/370 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L+ + EL A+ G P R QI +W++ F MS + +R L +
Sbjct: 14 INLVDLRYNELHNAITAFGEP----PFRAKQIHEWLFSHHANSFAAMSSLPLRLREKLAE 69
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F++ PE+V+ + SC+ R + IE V IP + R T C+SSQ GC +
Sbjct: 70 RFTLQRPEVVEVQESCESGCLRPTRKILLKLSDGALIECVLIPAEERMTACLSSQAGCPM 129
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TGT L RNL+A EI Q+ + G+ I+N+V MG
Sbjct: 130 QCTFCATGTMGLQRNLSAGEIWEQLYALN--------------GLALQEGKTITNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
MGEPL N DNV ++++ S + LS S+R+IT+ST G VP I R+ LA+SLH
Sbjct: 176 MGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKLAVSLH 235
Query: 245 AVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+ ++R L+PI +YPL +L + Y + IT Y+ML G+NDS DA L
Sbjct: 236 SARQEVRQQLMPIAAERYPLPLLSKSLEAY-SKATGEAITIVYMMLNGVNDSKEDAHLLA 294
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ + KINLI +NP + + F + + +R G + AACG
Sbjct: 295 RYCRHFSCKINLIDYNPILTIRFGSVQESQKNEFQAYLMAQKFHVTVRKSYGASVNAACG 354
Query: 364 QLKSLSKRIP 373
QL + +R
Sbjct: 355 QLVTQQQRRT 364
>gi|119357341|ref|YP_911985.1| radical SAM protein [Chlorobium phaeobacteroides DSM 266]
gi|205829698|sp|A1BGN4|RLMN_CHLPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|119354690|gb|ABL65561.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeobacteroides
DSM 266]
Length = 363
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 123/373 (32%), Positives = 185/373 (49%), Gaps = 19/373 (5%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ + R+EL +A+ +G P RT QI +WI+ F+ M+ IS E+R+ L
Sbjct: 7 NIKHLSRQELRQAIANLGEPA----YRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQ 62
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
F I +P + D + + + +IETV IP ++R T CVSSQVGC L
Sbjct: 63 FRIGFPILADCQQDGSANDPFSTVKLLLELDDNEKIETVLIPSENRMTACVSSQVGCPLQ 122
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC +G RNL+A+EI+ QV + +I+NIV MGM
Sbjct: 123 CRFCASGQTGFKRNLSADEIIDQVFSLNDFIR------------TKHESNEITNIVFMGM 170
Query: 188 GEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEPL NF+N+K+S+ + SD + +R+IT+ST G +P I +G+ LAISLH+
Sbjct: 171 GEPLLNFENLKESIEVLSDQSYKFNLPQRKITISTVGIIPGINELGKSGLKTKLAISLHS 230
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
S + R L+P+ ++ L L Y + +T Y++LKGINDS DA L+K
Sbjct: 231 ASQETRESLIPVASEFSLTQLRKTLSEYTSQT-GEPVTLVYMLLKGINDSVEDARLLVKF 289
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ KINLI +N ++ + F + I +G +R G I AACGQL
Sbjct: 290 SRSFLCKINLIDYNSIINMKFKPVFNETKDMFIQHILDAGIHVTVRKSHGASINAACGQL 349
Query: 366 KSLSKRIPKVPRQ 378
+ + +
Sbjct: 350 AAKGTQKAENRNN 362
>gi|332300071|ref|YP_004441992.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas
asaccharolytica DSM 20707]
gi|332177134|gb|AEE12824.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas
asaccharolytica DSM 20707]
Length = 341
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 125/363 (34%), Positives = 186/363 (51%), Gaps = 30/363 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
++G +L E + +G+P + QI W+Y + + + M+++S++ R LL H+
Sbjct: 7 ILGKTPAQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLASHY 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I ++ S DGT K+L G +ETV IPE R TLCVSSQ GC + C
Sbjct: 63 EIGRAAPHLQQTSRDGTVKYLFA------AGGGFVETVMIPEGDRATLCVSSQRGCKMNC 116
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG Q NL+A EIL Q+L +++NIV MGMG
Sbjct: 117 LFCMTGKQGFGANLSASEILNQILSV-------------------PEVNELTNIVFMGMG 157
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EP+ N D + + + +D GL+ S +RIT+ST G P + R EE LAISLH
Sbjct: 158 EPMDNIDTLLQVIRCLTDPKGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLP 217
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L
Sbjct: 218 EERLAIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLSQ 276
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ +NLI ++ P + SD + + + +G + IRT RG DI AACG L +
Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLSTQ 336
Query: 369 SKR 371
++
Sbjct: 337 EQQ 339
>gi|240171730|ref|ZP_04750389.1| hypothetical protein MkanA1_20620 [Mycobacterium kansasii ATCC
12478]
Length = 364
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 115/370 (31%), Positives = 184/370 (49%), Gaps = 28/370 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + A+ ++G+P R Q+ + R I D + MSD+ VR +
Sbjct: 14 MPPRHLADLDAAGRASAVAELGLPA----FRAKQLAHHYFGRLIADPRQMSDLPAAVRDV 69
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ V E G + L +E+V + R T+C+SSQ G
Sbjct: 70 IAAAMFPTLLTAVREVTCDAGQTRKTL----WRAVDGATVESVLMRYPQRNTVCISSQAG 125
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV A + + D G ++SN+V
Sbjct: 126 CGMACPFCATGQGGLTRNLSTAEIVEQVRAAAAAMRD-------------DFGDRLSNVV 172
Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V ++ ++ G S R +T+ST G P I ++ +E GV LA
Sbjct: 173 FMGMGEPLANYSRVVAAVRRITEPPPCGFGISARSVTVSTVGLAPAIRKLADERLGVTLA 232
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++LR+ LVP+N ++ ++ +DA R+Y ++ RR++ EY +++G+ND A
Sbjct: 233 LSLHAPDDELRDTLVPVNNRWKVDEALDAARYYAEVT-GRRVSVEYALIRGVNDQRWRAD 291
Query: 301 NLIK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
L + + + + +NLIP NP PG ++ S + F + ++ G S +R RG +
Sbjct: 292 LLGRRLHRALGPLVHVNLIPLNPTPGSDWDASPKPVERDFVKHVRAQGVSCTVRDTRGRE 351
Query: 358 ILAACGQLKS 367
I AACGQL +
Sbjct: 352 ISAACGQLAA 361
>gi|313893380|ref|ZP_07826952.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158
str. F0412]
gi|313442021|gb|EFR60441.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158
str. F0412]
Length = 348
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 194/368 (52%), Gaps = 28/368 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EEL+ I + R Q+ +IY R + DFQ M+ +E+R L+ +
Sbjct: 4 LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYVFDFQEMTQFPKELRQWLSDNC 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I P ++ E IS DG + +L + +E V + + ++CVSSQVGC++ C
Sbjct: 60 VISLPTLITESISPDGKTRKILL----EMTDQSRVEAVLMEQHYGYSVCVSSQVGCAMGC 115
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC + L R+LT EI+ QV++ +I ++V+MG G
Sbjct: 116 VFCASTQGGLYRDLTVAEIIGQVVI-----------------FGALTKEQIHSVVVMGAG 158
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N+DNV ++L + D + + S R++T+ST G+VPNI ++ +E + LA+SLHA +
Sbjct: 159 EPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHATN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
N++R ++P+ +Y L ++DA ++Y + RRITFEY+++ +N S +A L +I K
Sbjct: 219 NEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSVNASMEEAHALGQICK 277
Query: 308 GIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
P +NLIP N E ++ TF + + G S +R G I AACGQLK
Sbjct: 278 DFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVGSYGVSVTVRKEMGDAIQAACGQLK 337
Query: 367 SLSKRIPK 374
+ R +
Sbjct: 338 AAHGRKKE 345
>gi|317968945|ref|ZP_07970335.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
CB0205]
Length = 365
Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats.
Identities = 124/377 (32%), Positives = 184/377 (48%), Gaps = 42/377 (11%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+GM LE+ + G R Q+ W+Y +G R +S + + R L
Sbjct: 12 RPLLGMGLSALEQWAKQHG----QAAFRGRQLHDWLYAKGARSLDQVSVLPKAFREELAA 67
Query: 67 HFS------IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
+ + I+ DGT K LL + IETV IP + R T+CVSS
Sbjct: 68 QPPAAAFDWMGRSRELHRSIASDGTTKLLLGTHDQLS-----IETVGIPAEGRLTVCVSS 122
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG L R+L EI+ QVL R ++ P S
Sbjct: 123 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMDQRP-----------------S 165
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------- 233
++V MGMGEPL N ++V ++ +G++ +R+IT+ST G + R+ E
Sbjct: 166 HVVFMGMGEPLLNVESVLSAIDCLCTDLGMA--QRQITVSTVGVPRTLPRLAELALERLG 223
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
LA+SLHA LR L+P YP+E L++ CR Y ++ RR++FEY++L G+N
Sbjct: 224 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVEIT-GRRVSFEYILLGGLN 282
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D PR A L ++L+G + +NLIP+NP E+ + + F + + +R
Sbjct: 283 DQPRHAAALAQLLRGFQSHVNLIPYNPIQEEEFQRPTPQAVEAFRRALMDRHVAVSVRAS 342
Query: 354 RGLDILAACGQLKSLSK 370
RGLD AACGQL+ +
Sbjct: 343 RGLDADAACGQLRRRLE 359
>gi|313886711|ref|ZP_07820421.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923873|gb|EFR34672.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica
PR426713P-I]
Length = 341
Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats.
Identities = 126/363 (34%), Positives = 186/363 (51%), Gaps = 30/363 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
++G +L E + +G+P + QI W+Y + + + M+++S++ R LL H+
Sbjct: 7 ILGKTPTQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLASHY 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I ++ S DGT K+L G IETV IPE R TLCVSSQ GC + C
Sbjct: 63 EIGRAAPHLQQTSRDGTVKYLFA------AGGGFIETVMIPEGDRATLCVSSQRGCKMNC 116
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG Q NL+A EIL Q+L +++NIV MGMG
Sbjct: 117 LFCMTGKQGFGANLSASEILNQILSV-------------------PEVNELTNIVFMGMG 157
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EP+ N D + + + +D GL+ S +RIT+ST G P + R EE LAISLH
Sbjct: 158 EPMDNIDTLLQVIRCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLP 217
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L
Sbjct: 218 EERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLAQ 276
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ +NLI ++ P + SD + + + +G + IRT RG DI AACG L +
Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLSTQ 336
Query: 369 SKR 371
++
Sbjct: 337 EQQ 339
>gi|282850141|ref|ZP_06259520.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745]
gi|294791793|ref|ZP_06756941.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27]
gi|294793654|ref|ZP_06758791.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44]
gi|282579634|gb|EFB85038.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745]
gi|294455224|gb|EFG23596.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44]
gi|294457023|gb|EFG25385.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27]
Length = 348
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 28/368 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EEL+ I + R Q+ +IY R I DF+ M+ +++R L +
Sbjct: 4 LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYIFDFEDMTQFPKDLRQWLGDNC 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I P ++ E I+ DG + +L + +E V + + ++CVSSQVGC++ C
Sbjct: 60 VISLPTLITESIAPDGKTRKIL----VEMSDQSRVEAVLMEQHYGYSVCVSSQVGCAMGC 115
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC + L R+LT EI+ QV++ +I ++V+MG G
Sbjct: 116 VFCASTQGGLYRDLTVAEIIGQVVI-----------------FGALTKEEIHSVVVMGAG 158
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N+DNV ++L + D M + S R++T+ST G+VPNI ++ +E + LA+SLHA +
Sbjct: 159 EPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHATN 218
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
N++R ++P+ +Y L ++DA ++Y + RR+TFEY+++ +N S DA L KI K
Sbjct: 219 NEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASIDDAHALGKICK 277
Query: 308 GIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
P +NLIP N E ++ TF + + G S +R G I AACGQLK
Sbjct: 278 DFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQLK 337
Query: 367 SLSKRIPK 374
+ R +
Sbjct: 338 AAHGRKKE 345
>gi|34541648|ref|NP_906127.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis W83]
gi|81416860|sp|Q7MTB0|RLMN_PORGI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|34397966|gb|AAQ67026.1| conserved hypothetical protein TIGR00048 [Porphyromonas gingivalis
W83]
Length = 341
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 133/359 (37%), Positives = 189/359 (52%), Gaps = 30/359 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+GM EEL L++G+P R Q+ +WIYVR DF M++ISQ R L + +
Sbjct: 2 LLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKLAEIY 57
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ D + S DGT+K+L G +E+V IPE R TLC+SSQVGC + C
Sbjct: 58 DLGRYPWSDVQCSVDGTKKYLFPV-----GEGRFVESVLIPEGDRATLCISSQVGCKMDC 112
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG Q NL+A EIL Q+ +++N+V MGMG
Sbjct: 113 LFCMTGKQGWNGNLSAAEILNQIFSV-------------------DEAAELTNLVYMGMG 153
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EPL N D V +S+ ++ G+ +S +RIT+ST G + R E LA+SLH+
Sbjct: 154 EPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLHSPFP 212
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ R L+P + +P+ +D R Y S RR++FEY++ G+ND R A L IL+G
Sbjct: 213 EERRKLMPGEKAFPIMQTLDRIRAY-DFSGQRRVSFEYIVFDGLNDDMRHADELAAILRG 271
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
IP +INLI F+ P SD + F + ++ G++ IR RG DI AACG L +
Sbjct: 272 IPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGFTCTIRASRGEDIFAACGMLST 330
>gi|225156281|ref|ZP_03724759.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
gi|224803013|gb|EEG21258.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
Length = 367
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 133/371 (35%), Positives = 190/371 (51%), Gaps = 16/371 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
L + R +L + G+ H +++W ++Y+ D + MSD+ +R L
Sbjct: 6 IHLHDLPRVDLTALVASWGLSPVH----AARLWAYLYLEDTDDIRAMSDLPARMRDRLLA 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + P + S TRK+LL EIETV + K R T CVSSQVGC+
Sbjct: 62 ETSAARLPVACETHSSDGFTRKYLLALS-----DGREIETVLMRYKGRVTACVSSQVGCA 116
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG----DFPGCEDIEGMVIPSVGRKISN 181
+ C FC TG R+LTA EI+ Q L +L D P + ++ N
Sbjct: 117 MGCVFCATGQMGFTRHLTAGEIVAQALHVDRVLRRTADDAPALAEPGNASPHHRHERLRN 176
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLA 240
IV+MGMGEPL N+D V +++ I D GL+ R+ITLST G VP I R+ +E LA
Sbjct: 177 IVLMGMGEPLHNYDAVMRAIDILRDGNGLALGARKITLSTVGVVPGIIRLADEHNPVHLA 236
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH + R LVP R +PL+ L++ACR+Y RI FE+ +++G ND P A
Sbjct: 237 VSLHGATQAERAALVPAARAWPLDALMEACRYYVQKQQR-RIFFEWTLIEGKNDGPDQAR 295
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ ++L+G+ A++NLIP NP G F + G S IR RG+DI A
Sbjct: 296 AVGRLLRGMQAQVNLIPLNPTSGYAGEPGRADAAKRFQAVLAEHGLPSTIRQRRGIDIGA 355
Query: 361 ACGQLKSLSKR 371
CGQL + S+R
Sbjct: 356 GCGQLATESRR 366
>gi|167470721|ref|ZP_02335425.1| radical SAM domain protein, Cfr family [Yersinia pestis FV-1]
Length = 319
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 144/325 (44%), Positives = 188/325 (57%), Gaps = 19/325 (5%)
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
+R L + I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVS
Sbjct: 2 LRAKLQRVTEIRAPEVQKEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVS 55
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC+L C FC T Q RNL EI+ QV A ++G R I
Sbjct: 56 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGT----------RPI 105
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V L
Sbjct: 106 TNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVAL 165
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPR 297
AISLHA ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS
Sbjct: 166 AISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTE 225
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG D
Sbjct: 226 QAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDD 285
Query: 358 ILAACGQLKSLS-KRIPKVPRQEMQ 381
I AACGQL R + +++M
Sbjct: 286 IDAACGQLAGEVIDRTKRTLKKKMA 310
>gi|298705390|emb|CBJ28680.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 335
Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 121/347 (34%), Positives = 184/347 (53%), Gaps = 26/347 (7%)
Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
+ R Q+ KWI+ G F+ M++I + +R L + ++ E+ ++S DGT+K
Sbjct: 2 GEPKFRAKQVLKWIFEGGAESFEDMANIPKTLRAKLAKVATVGALEVAARQVSKDGTKKL 61
Query: 89 LLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
R IE+V +P R T C+SSQ GC++ C FC TG R L+A EI
Sbjct: 62 AYRLS-----DGQIIESVLMPYSDGRRTACISSQAGCAMGCVFCATGQMGFKRQLSAAEI 116
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
Q L G ++SN+V MGMGEPL N+ NV +++ +
Sbjct: 117 FEQAYRFSQEL--------------QKRGDRLSNVVFMGMGEPLANYKNVMEAVRRINTE 162
Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEML 266
+G+ R IT+ST G VP I R+ +E V LA+SLHA ++ R L+P+NR++PL L
Sbjct: 163 LGIG--ARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSEL 220
Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC 324
+DACR Y +S RR+TFE+ +++G NDS A L ++L+ + +N+IP NP G
Sbjct: 221 MDACREYVDVS-GRRMTFEWALIQGENDSAEVASELGRLLRPLKGMCHVNIIPLNPTDGY 279
Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
+ S + F E + ++G + R RG+DI A CGQL + +
Sbjct: 280 KGGPSMADAVNQFVEVLAKNGVPATPRIRRGIDIDAGCGQLTAKVSQ 326
>gi|257464159|ref|ZP_05628540.1| florfenicol resistance protein [Fusobacterium sp. D12]
gi|317061675|ref|ZP_07926160.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
gi|313687351|gb|EFS24186.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
Length = 349
Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 131/373 (35%), Positives = 195/373 (52%), Gaps = 28/373 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K +L+ + ++EL E L+ G+ + +++ W++ + R+ Q M+++S + R +
Sbjct: 1 MEKRNLLDLNQQELTELLVAEGM----KKFYGKEVFLWLHKKFARNIQEMTNLSLKHREI 56
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQ 121
L + I Y ++ ++S D T K+L + IETV + + R TLC+SSQ
Sbjct: 57 LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLE-----DGNTIETVLLRHRDQRNTLCISSQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C+FC TG VRNL EIL QV L G K++N
Sbjct: 112 VGCPVKCTFCATGQDGFVRNLRVSEILNQVYTIERRLN--------------KRGEKLTN 157
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
+V MGMGEPL N D + K+L I S G+ SKR+IT+STSG VP I R + E+ V LA
Sbjct: 158 LVFMGMGEPLINMDALMKALEILSCEEGICISKRKITISTSGIVPAIERILMEKTPVELA 217
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH+ N+ R+ ++PIN+ YPLE L Y + R+TFEY+++K N S DA
Sbjct: 218 ISLHSAINEKRDRIIPINKAYPLEDLSAVLLEYQRQTKR-RLTFEYILIKDFNVSEGDAN 276
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
L +NLIP NP +K I F E +K + +R +G DI
Sbjct: 277 ALADFAHQFDHIVNLIPCNPVSETGLERPSEKKIERFYEYLKNVRKVNVSLRQEKGTDID 336
Query: 360 AACGQLKSLSKRI 372
ACGQL+ ++
Sbjct: 337 GACGQLRQNQRKK 349
>gi|111225135|ref|YP_715929.1| ribosomal RNA large subunit methyltransferase N [Frankia alni
ACN14a]
gi|122953799|sp|Q0RDQ8|RLMN_FRAAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|111152667|emb|CAJ64408.1| Fe-S-cluster redox enzyme [Frankia alni ACN14a]
Length = 419
Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 121/378 (32%), Positives = 182/378 (48%), Gaps = 26/378 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLL 64
L + R+E + + +G P R Q+ + + R + + M+D+ + R L
Sbjct: 33 RHLADLSRDERRQVAVALGQPA----FRADQVSRHYFARLVDADETDAMTDLPENARGPL 88
Query: 65 NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ DG TRK R +E+V + R T+CVSSQ G
Sbjct: 89 LEALLPRLLVPARTLSCDDGLTRKTAWRT-----ADGALLESVIMRYPDRATVCVSSQAG 143
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+ EI+ QV+ A +L + ++SN+V
Sbjct: 144 CGMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLR---------RQELAGGQGRLSNVV 194
Query: 184 MMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V +L A GL S R +T+ST G VP + R+ E V LA
Sbjct: 195 FMGMGEPLANYTAVTAALRRLIAPSPEGLGLSARGLTVSTVGLVPAMRRLAGEGLPVTLA 254
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++LR+ LVPIN ++P+ ++ A Y ++ RR++ EY ++ G+ND A
Sbjct: 255 VSLHAPDDELRDELVPINTRWPVAEVLAAAWEYAEVT-GRRVSIEYALIDGVNDDVARAD 313
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +L G A +NLIP NP G + S F ++ G ++ +R RG +I A
Sbjct: 314 ALATLLAGRLAHVNLIPLNPTEGSSWQASAPAGQRAFVRRLRERGIATTVRDTRGREIAA 373
Query: 361 ACGQLKSL-SKRIPKVPR 377
ACGQL + + R +V
Sbjct: 374 ACGQLAAEPAGRARRVES 391
>gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 350
Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 130/370 (35%), Positives = 216/370 (58%), Gaps = 28/370 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K M+ EEL++ +++ G R Q++KWI+ +G++DF M+D+S E+R
Sbjct: 1 MIKID--SMLLEELKDFMVEQG----EKSFRGEQVYKWIFQKGVKDFSQMTDLSVELRGK 54
Query: 64 LNQHFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + S Y + ++ ++ DG++K+L + IE+V + ++ R TLCVS+QV
Sbjct: 55 LQNNASFTYLKPIEIKRDEYDGSQKFLFELEDKNK-----IESVALKDQDRITLCVSTQV 109
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C+FC T +R+LTA EI+ Q++ L + K++NI
Sbjct: 110 GCRMGCAFCATAKIGFIRDLTAGEIVRQIMEVNEHLA--------------TNSEKVTNI 155
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
V MGMGEPL N+ NV K++ I +D MGL +S R++T+STSG V I + + V LA+
Sbjct: 156 VFMGMGEPLDNYHNVVKAIGIITDEMGLGYSHRKVTVSTSGVVDRIDELFKLKKQVNLAV 215
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL+A ++D+R+ ++PIN+K+ +E L+ + P + +RIT EYVM+KG+ND+ DA
Sbjct: 216 SLNATTDDIRSAIMPINKKFNIEKLMKKLKSLP-IQKRKRITIEYVMIKGVNDTLDDAKR 274
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++L G+P KINLI +N Y D++ +++F + + ++ IR G +I A
Sbjct: 275 LVRLLNGLPIKINLIAYNDGGNENYRAPDEQTVLSFQKYLVDKHITAFIRKSLGKNIEGA 334
Query: 362 CGQLKSLSKR 371
CGQL + +
Sbjct: 335 CGQLYAKYNK 344
>gi|320334270|ref|YP_004170981.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
maricopensis DSM 21211]
gi|319755559|gb|ADV67316.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
maricopensis DSM 21211]
Length = 346
Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 121/338 (35%), Positives = 171/338 (50%), Gaps = 22/338 (6%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
R Q+ +W++ +G F+ M+++ VR L +S+ + S DG+ K+L
Sbjct: 17 YRRKQLLQWVFEKGAGRFEDMTNLPANVRAELAASYSLDPFLHTETARSRDGSVKYLFTL 76
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
++E VY+P R T+CVS+ VGC C+FC TG RNLTA EI+ QVL
Sbjct: 77 H-----DGKQMEAVYMPYLDRKTVCVSTMVGCPAKCAFCATGAMGFGRNLTAGEIVGQVL 131
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
G P R I ++V MGMGE L N+DNV + I +
Sbjct: 132 AVARGEGLPP--------------RDIRSLVFMGMGEGLLNYDNVMLASRILLHPLAFDM 177
Query: 213 SKRRITLSTSGFVPNIARVGEEIG--VMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
SKRR+TLST G I ++ E + LAISLHA + R ++P + + ++DA
Sbjct: 178 SKRRVTLSTVGLPKGIRKLAREDDLGIRLAISLHAPDEETRQRIIPTGHRNSIADIMDAA 237
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
R Y ++ RRITFEY ML+G+ND A L +L+G+ A +NLIP NPW G + S
Sbjct: 238 REYQDVT-GRRITFEYSMLRGVNDHLWQAEELAGLLRGLVAHVNLIPMNPWEGSGFEEST 296
Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ I F + + G +R RG D AACGQL
Sbjct: 297 EAQIQAFYDVLSARGVEVSVRRSRGRDAGAACGQLALK 334
>gi|183601687|ref|ZP_02963057.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
lactis HN019]
gi|241190814|ref|YP_002968208.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241196220|ref|YP_002969775.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|183219293|gb|EDT89934.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
lactis HN019]
gi|240249206|gb|ACS46146.1| hypothetical protein Balac_0778 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250774|gb|ACS47713.1| hypothetical protein Balat_0778 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295793803|gb|ADG33338.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
lactis V9]
Length = 398
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 183/370 (49%), Gaps = 26/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ +E ++G+P + R Q+ Y D +D R + +
Sbjct: 45 VHFADLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAR 100
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V +++ D T K L +IE+V + +R TLC+SSQVGC
Sbjct: 101 EFFPTLIREVTRQVADDGQTIKTLWEL-----FDGSKIESVLMRYPNRTTLCISSQVGCG 155
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EIL QV +A +++ ++SN+V M
Sbjct: 156 MGCPFCATGQLGLTRNMSTGEILEQVRIAAAMMERGEVAGGPG---------RLSNVVFM 206
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ + ++ S G S R IT+ST G VP I R+ +E + V LA+S
Sbjct: 207 GMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVS 266
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N LR+ LVP+NR++ ++ ++DA Y L++ RR++ EY +++GIND A L
Sbjct: 267 LHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQL 325
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L A +N IP NP G ++ S +D F E + +G ++ +R RG DI
Sbjct: 326 ANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDID 385
Query: 360 AACGQLKSLS 369
ACGQL + +
Sbjct: 386 GACGQLAAKT 395
>gi|152965388|ref|YP_001361172.1| ribosomal RNA large subunit methyltransferase N [Kineococcus
radiotolerans SRS30216]
gi|205829778|sp|A6W7W9|RLMN_KINRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|151359905|gb|ABS02908.1| radical SAM enzyme, Cfr family [Kineococcus radiotolerans SRS30216]
Length = 391
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 114/368 (30%), Positives = 173/368 (47%), Gaps = 26/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E A++++G R Q+ + R D M+D+ R + +
Sbjct: 35 RHFVDLEPAERGPAMVELG----EKAFRGKQLATQWFERLEDDPARMTDLPAASRTRIAE 90
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + T K L R +E+V + K+R T+C+SSQ GC
Sbjct: 91 ALLPTLLTPIRTLTADGGTTIKSLYRLH-----DGALVESVLMRYKNRDTICISSQAGCG 145
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ QV A L +P ++SN+V M
Sbjct: 146 MNCPFCATGQAGLTRNLSTAEIVEQVTAASRALA---------RDEVPGGPGRVSNVVFM 196
Query: 186 GMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGE L N+ + ++ + GL S R +T+ST G VP I + +E I LA+S
Sbjct: 197 GMGEALANYKSAVAAVRRLVSPAPDGLGISARGVTMSTVGLVPAIDKFAQEGIAATLALS 256
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++LR+ LVPIN+++ + +DA R Y + RR++ EY ++K IND A L
Sbjct: 257 LHAPDDELRDELVPINQRWKVGEALDAARRYFEAT-GRRVSIEYALIKDINDQAWRADRL 315
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K+L +N IP NP PG ++ SD F ++ G + +R RG DI
Sbjct: 316 GKLLNARGRGWVHVNPIPLNPTPGSKWTASDPAVERAFVAALENRGIPTTVRDTRGSDID 375
Query: 360 AACGQLKS 367
ACGQL +
Sbjct: 376 GACGQLAA 383
>gi|219683780|ref|YP_002470163.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis AD011]
gi|219621430|gb|ACL29587.1| radical SAM enzyme, Cfr family protein [Bifidobacterium animalis
subsp. lactis AD011]
Length = 393
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 183/370 (49%), Gaps = 26/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ +E ++G+P + R Q+ Y D +D R + +
Sbjct: 40 VHFADLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAR 95
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V +++ D T K L +IE+V + +R TLC+SSQVGC
Sbjct: 96 EFFPTLIREVTRQVADDGQTIKTLWEL-----FDGSKIESVLMRYPNRTTLCISSQVGCG 150
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EIL QV +A +++ ++SN+V M
Sbjct: 151 MGCPFCATGQLGLTRNMSTGEILEQVRIAAAMMERGEVAGGPG---------RLSNVVFM 201
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ + ++ S G S R IT+ST G VP I R+ +E + V LA+S
Sbjct: 202 GMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVS 261
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N LR+ LVP+NR++ ++ ++DA Y L++ RR++ EY +++GIND A L
Sbjct: 262 LHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQL 320
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L A +N IP NP G ++ S +D F E + +G ++ +R RG DI
Sbjct: 321 ANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDID 380
Query: 360 AACGQLKSLS 369
ACGQL + +
Sbjct: 381 GACGQLAAKT 390
>gi|314923760|gb|EFS87591.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL001PA1]
gi|314966226|gb|EFT10325.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA2]
gi|314981992|gb|EFT26085.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA3]
gi|315090903|gb|EFT62879.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA4]
gi|315095116|gb|EFT67092.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL060PA1]
gi|315104345|gb|EFT76321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA2]
gi|327328106|gb|EGE69875.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL103PA1]
Length = 405
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ +G+P R QI ++ R D +D+ + R + +
Sbjct: 44 IDLSIEERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 100 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQA 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 155 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 205
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 206 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 265
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 266 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 324
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S D F E ++R +R RG
Sbjct: 325 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTRG 384
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 385 SEIDGACGQLAA 396
>gi|19553223|ref|NP_601225.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum ATCC 13032]
gi|62390859|ref|YP_226261.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum ATCC 13032]
gi|81760328|sp|Q8NP06|RLMN_CORGL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|21324790|dbj|BAB99413.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
ATCC 13032]
gi|41326198|emb|CAF20360.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
ATCC 13032]
Length = 366
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 116/373 (31%), Positives = 182/373 (48%), Gaps = 31/373 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + E EAL ++G+P + R +QI + Y R D M+D+ + R
Sbjct: 16 MPPTHFADLNDEARIEALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQE 71
Query: 64 LNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + + D T+K L + +E+V + R TLC+SSQ
Sbjct: 72 VKDALFPTLMSPLRVVETDDDTTQKTLWKLH-----DGTLLESVLMRYSDRSTLCISSQA 126
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A + + S G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSIGEIVDQVRNAAATM--------------QSEGGRLSNI 172
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEPL N+ V ++ G S+R +T+ST G P I ++ +E + V L
Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTL 232
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++P+ ++DA R+Y S RR++ EY +++ +ND A
Sbjct: 233 AVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQDWRA 291
Query: 300 LNLI-KILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K+ K + +NLIP NP PG ++ + + F + G +R +G
Sbjct: 292 DMLGEKLHKALGSRVHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQ 351
Query: 357 DILAACGQLKSLS 369
+I AACGQL +
Sbjct: 352 EIAAACGQLAAEE 364
>gi|282854662|ref|ZP_06263997.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139]
gi|282582244|gb|EFB87626.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139]
Length = 376
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ +G+P R QI ++ R D +D+ + R + +
Sbjct: 15 IDLSIEERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 70
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 71 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQA 125
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 126 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 176
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 177 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 236
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 237 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 295
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S D F E ++R +R RG
Sbjct: 296 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTRG 355
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 356 SEIDGACGQLAA 367
>gi|237741553|ref|ZP_04572034.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
gi|229429201|gb|EEO39413.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
Length = 358
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 128/378 (33%), Positives = 200/378 (52%), Gaps = 30/378 (7%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S +
Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGT 115
R +L + I + ++ +IS D T K+L + +E + + R T
Sbjct: 56 REILTEKTYIPFFNLLKHQISKIDRTEKFLFELEDKRT---IETVLLRHKDSKNKEIRNT 112
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQVGC + CSFC TG +RNL+ EIL Q+ L
Sbjct: 113 LCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRLR--------------KK 158
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEE 234
G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + ++
Sbjct: 159 GETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDK 218
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ N
Sbjct: 219 IPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNFNI 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTP 353
S DA L + +NLIP+N G E+ K I F +K + +R
Sbjct: 278 SETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQE 337
Query: 354 RGLDILAACGQLKSLSKR 371
+G DI ACGQL+ +K+
Sbjct: 338 KGSDIDGACGQLRQRNKK 355
>gi|68536246|ref|YP_250951.1| hypothetical protein jk1169 [Corynebacterium jeikeium K411]
gi|123650875|sp|Q4JV24|RLMN_CORJK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|68263845|emb|CAI37333.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
Length = 365
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 118/374 (31%), Positives = 189/374 (50%), Gaps = 31/374 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + + E L+E + ++G+P + R QI + Y R D M+D+ + R
Sbjct: 16 MPPVHMADLDEETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAA 71
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + + + + D TRK L R +E+V + R TLC+SSQ
Sbjct: 72 VKEALFPELMQPMRNMDADDGETRKTLWRLH-----DGTMLESVLMRYPGRATLCISSQA 126
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ E++ Q A S + + G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSVGEMVEQARAAASTMQE--------------EGGRLSNI 172
Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEPL N+ V +++ G S+R IT+ST G P I ++ +E + V L
Sbjct: 173 VFMGMGEPLANYKRVVETIRKVSAPAPDGFGISQRNITVSTVGLAPAIRKLADEEMKVRL 232
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++ +E ++DA R+Y ++ RR++ EY +++ +ND P A
Sbjct: 233 AVSLHTPDDELRDELVPVNNRWSVEEVLDAARYYAD-TSGRRVSIEYALIRDMNDQPWRA 291
Query: 300 LNLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L+G +NLIP NP PG ++ S + F ++ G +R +G
Sbjct: 292 DLLGKKLRGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQ 351
Query: 357 DILAACGQLKSLSK 370
+I AACGQL + +
Sbjct: 352 EIAAACGQLAAEER 365
>gi|328752153|gb|EGF65769.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL020PA1]
Length = 405
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 23/367 (6%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLT 127
+ V ++ T K L R + V + + R TLC+SSQ GC +
Sbjct: 100 PVLLTKVSQQSCDRGTTVKTLWRLHGGALVESVLMYYPATRHTAARATLCLSSQAGCGMA 159
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG + RN++ EI+ QVL A L+ +P ++ NIV MGM
Sbjct: 160 CPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNIVFMGM 210
Query: 188 GEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRAAVLAR 329
Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++ A +NLIP NP PG + S +D F E ++R +R RG +I
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389
Query: 361 ACGQLKS 367
ACGQL +
Sbjct: 390 ACGQLAA 396
>gi|327334229|gb|EGE75943.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL097PA1]
Length = 405
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 100 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 155 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 205
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 206 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 265
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 266 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 324
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 325 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 384
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 385 SEIDGACGQLAA 396
>gi|314978904|gb|EFT22998.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA2]
gi|315089293|gb|EFT61269.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA1]
Length = 405
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 100 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 155 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 205
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 206 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 265
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 266 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 324
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 325 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 384
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 385 SEIDGACGQLAA 396
>gi|313829419|gb|EFS67133.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA2]
gi|315108996|gb|EFT80972.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA2]
Length = 418
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 57 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 112
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 113 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 167
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 168 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 218
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 219 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 278
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 279 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 337
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 338 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 397
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 398 SEIDGACGQLAA 409
>gi|289426335|ref|ZP_06428078.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187]
gi|295131063|ref|YP_003581726.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137]
gi|289153063|gb|EFD01781.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187]
gi|291376435|gb|ADE00290.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137]
Length = 406
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 45 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 100
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 101 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 155
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 156 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 206
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 207 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 266
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 267 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 325
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 326 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 385
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 386 SEIDGACGQLAA 397
>gi|227484655|ref|ZP_03914971.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172]
gi|227237375|gb|EEI87390.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172]
Length = 340
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 126/367 (34%), Positives = 196/367 (53%), Gaps = 30/367 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ E+E + + + + R Q+++ I+V + DF M+D+ ++R L
Sbjct: 2 ININDKTIYEIENLFKE----RSYQKFRAKQVFRAIHVNRLNDFDEMTDLPLKMREDLKA 57
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F +++ S D T+K+LL P + +E VY+ K R T+C+SSQVGC
Sbjct: 58 DFKFERIKVLKTFESKIDSTKKYLLELPDKN-----IVEAVYMDYKDRSTICISSQVGCR 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC + LVRN+TA E++ +V L L G ISNIV+M
Sbjct: 113 MGCSFCASTKNGLVRNMTASELIEEVYLLERLNG------------------PISNIVIM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEPL NFD++KK + I +D G + S R ITLSTSG P I + + V LA+SLH
Sbjct: 155 GIGEPLDNFDHIKKFIEIITDPSGRNLSHRSITLSTSGLSPRIKDLADTGLDVNLALSLH 214
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ R + +P+ +KY ++ LIDA +Y + RR++FEYV++ G+N+ D NL
Sbjct: 215 YADDKKRAVYMPVAKKYSIKDLIDATDYYFDKT-GRRVSFEYVVIDGVNNLTEDVENLRD 273
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+L G INLIP NP + + + F + + + G ++ IR G+DI A+CGQ
Sbjct: 274 LLFGKNVHINLIPLNPIEEFNHKKPGARVLEDFKQRLIKRGLNATIRRSMGIDIDASCGQ 333
Query: 365 LKSLSKR 371
L++ R
Sbjct: 334 LRNNYAR 340
>gi|50842992|ref|YP_056219.1| hypothetical protein PPA1514 [Propionibacterium acnes KPA171202]
gi|81611434|sp|Q6A7K4|RLMN_PROAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|50840594|gb|AAT83261.1| conserved protein [Propionibacterium acnes KPA171202]
gi|313763570|gb|EFS34934.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA1]
gi|313773509|gb|EFS39475.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL074PA1]
gi|313793963|gb|EFS41987.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA1]
gi|313801350|gb|EFS42601.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA2]
gi|313807970|gb|EFS46451.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA2]
gi|313811561|gb|EFS49275.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA1]
gi|313819539|gb|EFS57253.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA2]
gi|313822138|gb|EFS59852.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA1]
gi|313823628|gb|EFS61342.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA2]
gi|313825952|gb|EFS63666.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA1]
gi|313831301|gb|EFS69015.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL007PA1]
gi|313834912|gb|EFS72626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL056PA1]
gi|313839929|gb|EFS77643.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL086PA1]
gi|314914724|gb|EFS78555.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA4]
gi|314919314|gb|EFS83145.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA1]
gi|314920776|gb|EFS84607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA3]
gi|314924723|gb|EFS88554.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA3]
gi|314930455|gb|EFS94286.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL067PA1]
gi|314954388|gb|EFS98794.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA1]
gi|314957479|gb|EFT01582.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA1]
gi|314962106|gb|EFT06207.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA2]
gi|314963685|gb|EFT07785.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA1]
gi|314968487|gb|EFT12585.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA1]
gi|314974177|gb|EFT18273.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA1]
gi|314976533|gb|EFT20628.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL045PA1]
gi|314984352|gb|EFT28444.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA1]
gi|314986542|gb|EFT30634.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA2]
gi|314990901|gb|EFT34992.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA3]
gi|315079535|gb|EFT51528.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA2]
gi|315083603|gb|EFT55579.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA2]
gi|315087120|gb|EFT59096.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA3]
gi|315095316|gb|EFT67292.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL038PA1]
gi|315100320|gb|EFT72296.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA1]
gi|315106754|gb|EFT78730.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA1]
gi|327328421|gb|EGE70183.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA2]
gi|327329713|gb|EGE71469.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA3]
gi|327444208|gb|EGE90862.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA2]
gi|327444913|gb|EGE91567.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA1]
gi|327446398|gb|EGE93052.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA2]
gi|327452014|gb|EGE98668.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL092PA1]
gi|327454949|gb|EGF01604.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA3]
gi|327457765|gb|EGF04420.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA2]
gi|328755218|gb|EGF68834.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA1]
gi|328758303|gb|EGF71919.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA2]
gi|328760026|gb|EGF73607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL099PA1]
gi|332675942|gb|AEE72758.1| ribosomal RNA large subunit methyltransferase N [Propionibacterium
acnes 266]
Length = 405
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 100 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 155 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 205
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 206 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 265
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 266 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 324
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 325 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 384
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 385 SEIDGACGQLAA 396
>gi|258645365|ref|ZP_05732834.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470]
gi|260402714|gb|EEW96261.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470]
Length = 345
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 189/365 (51%), Gaps = 27/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K ++ G+ +ELE ++ G P R R Q+ ++Y R I F M+ SQ++R L
Sbjct: 2 KRNIWGLNLQELETWVVGNGFP----RFRAKQLRDYLYKRHIFHFDEMTQFSQKMRDWLK 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++ I P I+ S D + +ETV + ++CVS+QVGC+
Sbjct: 58 ENGQIDKPVIISRAQSDDEKT----IKLLLKLKDGSLVETVCMCHHYGNSICVSTQVGCA 113
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC + + L RNLTA EIL Q+ + L +IV+M
Sbjct: 114 MGCIFCASTRKGLERNLTAGEILAQMYAFKEL-----------------YDIPFHSIVLM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+ V + +A+D L+ S R IT+ST G VP I R+ +E + LAISLH
Sbjct: 157 GAGEPLTNYKEVLHFIHLANDPELLNISYRNITISTCGIVPQIYRLADENIPITLAISLH 216
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A ++ +RN+LVPI++ + ++ ++ A +Y + R+TFEY+++K +N S +A L +
Sbjct: 217 APNDRIRNVLVPISKNFRIKDVVSAAEYYFKKTKR-RVTFEYILIKDMNASVENAKELCR 275
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++ +P INLIP N + + K+I F + + + G + +R G +I AACGQ
Sbjct: 276 LIGKMPCHINLIPINSTEHIKLYPPEWKEIKRFQDILLKKGKETTVRKQMGDEIQAACGQ 335
Query: 365 LKSLS 369
LK
Sbjct: 336 LKRRY 340
>gi|262384399|ref|ZP_06077534.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B]
gi|301308675|ref|ZP_07214627.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3]
gi|262294102|gb|EEY82035.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B]
gi|300833199|gb|EFK63817.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3]
Length = 343
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 131/367 (35%), Positives = 182/367 (49%), Gaps = 29/367 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ K L+GM EEL+ ++G+P Q+ WIY + I M++I+ R
Sbjct: 1 MVDKRQLLGMTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL F I + + S DGT K+L G +E+VYIP R TLCVSSQV
Sbjct: 57 LLEDSFEIGAYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q NLTA +IL Q+ ++NI
Sbjct: 112 GCKMNCLFCMTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+S
Sbjct: 153 VFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH+ R L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L
Sbjct: 213 LHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEAL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L GIP ++NLI F+ P SD + F + + G IR RG DI AAC
Sbjct: 272 SCLLGGIPCRVNLIRFHAIPNVSLETSDIVKMEAFRDFLNAKGVVCTIRASRGEDIFAAC 331
Query: 363 GQLKSLS 369
G L +
Sbjct: 332 GMLSTAK 338
>gi|269219614|ref|ZP_06163468.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269210856|gb|EEZ77196.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 404
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 120/369 (32%), Positives = 173/369 (46%), Gaps = 27/369 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L + E ++ + K G P R Q+ + + D + M+D+ R L
Sbjct: 25 HLADLDVAERKDRVAKAGFPA----FRADQLSRHYFEHFDVDPERMTDLPARGREELVST 80
Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F V + + G T K L R +ETV + R TLC+SSQ GC +
Sbjct: 81 FLPPLLTKVRDLTADRGLTIKSLWRM-----FDGAMVETVLMKYPDRATLCISSQAGCGM 135
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+A EI+ QV E +++N+V MG
Sbjct: 136 ACPFCATGQGGLTRNLSAGEIVEQVRCGMLAAARGDLGEPC----------RLTNVVFMG 185
Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ V K+L G S R +T+ST G P I ++ E+ + V LAISL
Sbjct: 186 MGEPLANWKQVLKALRRIIEPSPAGFGLSARNVTVSTVGMAPLIEKLAEQGMPVTLAISL 245
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+PIN ++ + L+DA R Y + RR++ EY +++ +ND A L
Sbjct: 246 HAPDDELRDPLIPINSRFNVGRLLDAARSYFAKT-GRRVSVEYALIRDMNDHKWRAQLLA 304
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S + TF + + +G + IR RG DI
Sbjct: 305 DELNRRGRGWAHVNPIPLNPTPGSIWTASTPEAQNTFVQTLLDAGIPTTIRDTRGSDIDG 364
Query: 361 ACGQLKSLS 369
ACGQL +
Sbjct: 365 ACGQLAAEV 373
>gi|145295923|ref|YP_001138744.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum R]
gi|205829740|sp|A4QF26|RLMN_CORGB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|140845843|dbj|BAF54842.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 366
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 115/373 (30%), Positives = 182/373 (48%), Gaps = 31/373 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + E EAL ++G+P + R +QI + Y R D M+D+ + R
Sbjct: 16 MPPTHFADLNDEARIEALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQE 71
Query: 64 LNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + + D T+K L + +E+V + R TLC+SSQ
Sbjct: 72 VKDALFPTLMSPLRVIETDDDTTQKTLWKLH-----DGTLLESVLMRYSDRSTLCISSQA 126
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV A + + + G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSIGEIVDQVRNAAATM--------------QAEGGRLSNI 172
Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEPL N+ V ++ G S+R +T+ST G P I ++ +E + V L
Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTL 232
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH ++LR+ LVP+N ++P+ ++DA R+Y S RR++ EY +++ +ND A
Sbjct: 233 AVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQDWRA 291
Query: 300 LNLI-KILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K+ K + +NLIP NP PG ++ + + F + G +R +G
Sbjct: 292 DMLGEKLHKALGSRVHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQ 351
Query: 357 DILAACGQLKSLS 369
+I AACGQL +
Sbjct: 352 EIAAACGQLAAEE 364
>gi|297624942|ref|YP_003706376.1| radical SAM domain-containing protein [Truepera radiovictrix DSM
17093]
gi|297166122|gb|ADI15833.1| radical SAM enzyme, Cfr family [Truepera radiovictrix DSM 17093]
Length = 349
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 119/361 (32%), Positives = 177/361 (49%), Gaps = 29/361 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SL+ + + L R +Q+ W+Y RG ++ M+++ + R L
Sbjct: 5 QSLLELSPDAL--------PAPDAQPYRRAQLAAWLYQRGALSWEAMTNLPRAWRAELGA 56
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ + ++ +S D + ++LL P + E VY+P + R TLCVSS VGC
Sbjct: 57 RYRLSPFVRLERFVSADASVRYLLTLP-----DGKQTEAVYMPYRGRKTLCVSSMVGCPA 111
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TG RNL+ EIL Q+L+ G P R+I N+V+MG
Sbjct: 112 GCAFCATGALGFGRNLSRAEILGQLLVVAQAEGIAP--------------REIRNVVLMG 157
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML-AISLHA 245
MGE L N+DN ++ GL S RRITLST G I R+ E ++ A+SLHA
Sbjct: 158 MGEALLNYDNALGAIRTMIHPEGLDMSPRRITLSTVGLPGRIRRLAAERLPLVLAVSLHA 217
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R ++P + +E +I A + + RR+T EY ML G+ND+ A L+ +
Sbjct: 218 PDEKTRREIIPTAHAHAIEEIIAALHDWQA-AGGRRVTIEYTMLAGVNDALWQAEALVAL 276
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ +NLIPFNPW + S + I F + +G S +R RG D ACGQL
Sbjct: 277 LRGLVVHVNLIPFNPWGASPFRSSSRAQIARFERVLTGAGLSVSVRFSRGRDTGGACGQL 336
Query: 366 K 366
Sbjct: 337 A 337
>gi|256832241|ref|YP_003160968.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
gi|256685772|gb|ACV08665.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
Length = 376
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 111/370 (30%), Positives = 174/370 (47%), Gaps = 24/370 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
M +E + + ++G H R Q+ + + M+D+ + + L
Sbjct: 25 RHFADMTPQERRDVVTELG----HQPFRAKQLETHYFSHLTDNADEMTDLPAQAKSELVG 80
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ P +V + + + ++ R ++IE+V + +R TLCVSSQ GC +
Sbjct: 81 A---LMPPLVSKIRTLEADGGATVKTLWRLF-DGIKIESVLMRYPTRSTLCVSSQAGCGM 136
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV A L IP ++N+V MG
Sbjct: 137 ACPFCATGQMGLTRNLSTAEIVEQVRQAARALAQ---------GEIPGGATHLNNLVFMG 187
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ + ++ G S R IT+ST G VP I ++ +E + LA+SL
Sbjct: 188 MGEPLANYKALMGAVRQFVAPSPQGFGLSARNITVSTVGLVPAINKLAKEGLPLTLALSL 247
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVPIN ++ ++ +DA Y + RR++ EY ++K +ND A L
Sbjct: 248 HAPDDELRSQLVPINTRWTVDEALDAAYGYYDAT-GRRVSIEYALIKDMNDHAWRADLLG 306
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ L +N IP NP PG + SD+ F ++ + IR RG DI
Sbjct: 307 EKLNARGRGWVHVNPIPLNPTPGSIWTASDRDVEQEFVRRLRSHNIPTTIRDTRGSDIDG 366
Query: 361 ACGQLKSLSK 370
ACGQL + +
Sbjct: 367 ACGQLAAEDE 376
>gi|116073729|ref|ZP_01470991.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
gi|116069034|gb|EAU74786.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
Length = 346
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 186/370 (50%), Gaps = 37/370 (10%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+G +LE+ + G R Q+ W+Y +G RD G++ + + R L +
Sbjct: 5 LLGRSAADLEQWAVAQG----QSSFRGRQLHDWLYAKGARDLNGITVLPKVWRAALQEQG 60
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + ++ D T K LL IETV IP R T+CVSSQVGC +
Sbjct: 61 VVVGRLQEQLRSVASDATTKLLLGTEDAE-----TIETVGIPTDQRLTVCVSSQVGCPMA 115
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L R+L EI+ QVL R ++ R+ S++V MGM
Sbjct: 116 CRFCATGKGGLQRSLATHEIVDQVLSIREVMD-----------------RRPSHVVFMGM 158
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
GEPL N D V +++ +D +G+ +RRIT+ST G + ++ E LA
Sbjct: 159 GEPLLNIDAVLEAIRCFNDDLGIG--QRRITVSTVGVPRTLPKLAELAMERLGRAQFTLA 216
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LR L+P YP E L+D CRHY ++ RR++FEY++L G+ND P A
Sbjct: 217 VSLHAPNQQLREELIPTAHAYPFEALLDDCRHYLAIT-GRRVSFEYILLGGLNDHPAHAE 275
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L + G + +NLI +NP E+ + I F ++R G + +R RGLD A
Sbjct: 276 ELADRVGGFQSHVNLIAYNPIEEEEFQRPSAERIAGFRRVLERRGVAVSLRASRGLDQNA 335
Query: 361 ACGQLKSLSK 370
ACGQL+ +K
Sbjct: 336 ACGQLRRQNK 345
>gi|325282884|ref|YP_004255425.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
proteolyticus MRP]
gi|324314693|gb|ADY25808.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
proteolyticus MRP]
Length = 350
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 118/338 (34%), Positives = 172/338 (50%), Gaps = 22/338 (6%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
R Q+ +W+Y G+ ++ M + E+R L + + + ++ S DG+ K+L
Sbjct: 22 FRRRQLLEWVYQHGVGSYEQMHTLPAELRAELAAGWRLNPFDDIETFRSDDGSVKYLFTL 81
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
P ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ Q+L
Sbjct: 82 P-----DGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVGQIL 136
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
R+I N+V MGMGE + N+DN ++ I L
Sbjct: 137 AV--------------AGGEGIEPREIRNLVFMGMGEAMLNYDNTMQAARILLHPQALGM 182
Query: 213 SKRRITLSTSGFVPNIARVGEEIG--VMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
SKRR+TLST G I R+ EE + LAISLHA + R ++P ++ ++ A
Sbjct: 183 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGGANSIDEIMQAA 242
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
R Y + RRIT EY ML+GIND A L + L+G+ + +NLIP NPWPG ++ S
Sbjct: 243 RDYQAKT-GRRITMEYTMLRGINDHLWQAELLAERLEGLVSHVNLIPMNPWPGSNFVSST 301
Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
++ I F + ++ G +R RG D AACGQL
Sbjct: 302 EEQIQAFYDLLEERGVDVSVRRSRGKDAGAACGQLALK 339
>gi|159904144|ref|YP_001551488.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
MIT 9211]
gi|205829806|sp|A9BCH2|RLMN_PROM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|159889320|gb|ABX09534.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9211]
Length = 356
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 133/377 (35%), Positives = 192/377 (50%), Gaps = 37/377 (9%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK L+G +LE+ + G P R QI +W+Y +G+R + +S + + R L
Sbjct: 9 KKVVLLGQNVAKLEKLAQEYGEPA----FRGRQIHEWLYQKGVRKLEEISVLPKLWRTTL 64
Query: 65 NQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ E V ++ DGT K LL R IE V IP SR T CVSSQVG
Sbjct: 65 SDQGVCTGRLEEVKRLVANDGTIKLLLETSDRES-----IEAVGIPTNSRLTTCVSSQVG 119
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
CS+ C FC TG R+L EI+ QVL R R+ S+IV
Sbjct: 120 CSMGCRFCATGKGGFQRSLEVHEIVDQVLSIREAFD-----------------RRPSHIV 162
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
MGMGEPL N ++V +S+S ++ +G+ +RRIT+ST G V + ++ E +
Sbjct: 163 FMGMGEPLLNIESVLESISCLNNDLGIG--QRRITVSTVGVVNTLPQLAELALAKLGRVQ 220
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LA+SLHA + LR +LVP + YP++ L+ CRHY ++ RRI+FEY++L +ND
Sbjct: 221 FTLALSLHAPNQHLREMLVPSAKVYPIQDLLSDCRHYLDIT-GRRISFEYILLATVNDKV 279
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L ++ G + +NLI +NP +Y I F ++ G + +R RGL
Sbjct: 280 EHAEELADLISGFQSHVNLIAYNPIDEEDYQRPSLARINRFMTVLQSRGVAVSLRASRGL 339
Query: 357 DILAACGQLKSLSKRIP 373
D AACGQL+ R+
Sbjct: 340 DQDAACGQLRHQHTRLD 356
>gi|289428733|ref|ZP_06430416.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165]
gi|289158131|gb|EFD06351.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165]
Length = 376
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 15 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 70
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 71 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 125
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 126 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 176
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 177 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 236
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 237 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 295
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 296 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 355
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 356 SEIDGACGQLAA 367
>gi|145219757|ref|YP_001130466.1| radical SAM protein [Prosthecochloris vibrioformis DSM 265]
gi|205829809|sp|A4SEQ5|RLMN_PROVI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145205921|gb|ABP36964.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeovibrioides
DSM 265]
Length = 373
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 118/371 (31%), Positives = 176/371 (47%), Gaps = 22/371 (5%)
Query: 3 FLKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+ K ++ + ++L L ++ P R QI +W++ F+ M+ +S+ +
Sbjct: 12 TMAKTLQNITDLTLQQLTGRLAEMKEPAW----RAKQIHEWLFSHRAESFEEMTTLSKAL 67
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + F+I PE+ S +G + IETV IP R T C+SS
Sbjct: 68 RKALEETFAITPPEVEQHDNSTEGACPGPTEKLLLRLPDGAMIETVLIPGPGRLTACLSS 127
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC+L CSFC TG+ RNLT EI Q S+L +KI+
Sbjct: 128 QAGCALQCSFCATGSLGFKRNLTPGEITGQANALNSMLA------------ASGREQKIT 175
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
NIV MGMGEPL N NV ++ S S S+R+IT+ST G +P IA++ +
Sbjct: 176 NIVFMGMGEPLLNTLNVFDAVETLSTRGYTSSISQRKITISTVGIIPEIAKLATSGMKTK 235
Query: 239 LAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLH+ + R L+P R+YPL+ L HY + +T Y++L+G+ND+
Sbjct: 236 LAVSLHSAFQEKRESLMPLAARRYPLDELQPVLAHYAKNT-GEPVTLVYMLLEGVNDTLE 294
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA LI+ KINLI +N + + F + + +G +R G
Sbjct: 295 DARQLIRFASRFFCKINLIDYNSIVNIPFQSVCSETRDRFRDRLLEAGLQVTLRKSYGTS 354
Query: 358 ILAACGQLKSL 368
I AACGQL +
Sbjct: 355 IHAACGQLAAK 365
>gi|124022151|ref|YP_001016458.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. MIT 9303]
gi|205829805|sp|A2C6T3|RLMN_PROM3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123962437|gb|ABM77193.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9303]
Length = 356
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 186/369 (50%), Gaps = 37/369 (10%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+G ELE + G P R Q+ W+Y +G R F ++ + + R L Q
Sbjct: 13 LLGCSATELESWAVAEGQPA----FRGRQLHDWLYAKGARSFDAITVLPKSWRISLQQRG 68
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+I V+ ++ D T K LL IE+V IP + R T+C+SSQVGC +
Sbjct: 69 LTIGRLLEVNRAVAVDDTTKLLLATV-----DGETIESVGIPTQQRLTVCLSSQVGCPMA 123
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC +G L R+L EI+ QVL R + R+ S++V MGM
Sbjct: 124 CRFCASGKGGLQRSLATHEIVDQVLSLREAMD-----------------RRPSHVVFMGM 166
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
GEPL N + V S+ + +G++ +RRIT+ST G + ++ E LA
Sbjct: 167 GEPLLNIEAVLASIRCLNIDLGIA--QRRITVSTVGVPHTLPQLAELAMKRLGRAQFTLA 224
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + +LR L+P YP E L+ CRHY ++ RR+TFEY++L +ND P+ A
Sbjct: 225 VSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVT-GRRVTFEYILLGALNDQPQHAE 283
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L + ++G + +NLI +NP + + + I F +++ G + +R RGLD A
Sbjct: 284 ELAERVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLDQNA 343
Query: 361 ACGQLKSLS 369
ACGQL+
Sbjct: 344 ACGQLRRQH 352
>gi|226356358|ref|YP_002786098.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
deserti VCD115]
gi|259491983|sp|C1CVX7|RLMN_DEIDV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|226318348|gb|ACO46344.1| conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 343
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 118/338 (34%), Positives = 171/338 (50%), Gaps = 22/338 (6%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
R Q+ +W++V+G+ F M+++ E R L + + + ++ S DG+ K+L
Sbjct: 17 FRRRQLLEWVFVQGVGTFDAMTNLPAEARAELARSYHLNPFREIETVRSADGSVKYLFTL 76
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL
Sbjct: 77 T-----DGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVAQVL 131
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
G P R+I N+V MGMGE + N++N ++ I L
Sbjct: 132 AVAGGEGIGP--------------REIRNLVFMGMGEAMLNYENTMQAARILLHPQALGM 177
Query: 213 SKRRITLSTSGFVPNIARVGEEIG--VMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
SKRR+TLST G I ++ E + LAISLHA D R ++P + ++ A
Sbjct: 178 SKRRVTLSTVGIAKGIRQLAAEDDLGIKLAISLHAPDEDTRQRIIPTGAANSIAEIMAAA 237
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
R Y ++ RRIT EY ML+GIND A L +L+G+ + +NLIP NPW G + S
Sbjct: 238 RDYQAVT-GRRITLEYTMLRGINDHLWQAELLADVLQGLVSHVNLIPMNPWDGSGFESST 296
Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ I F + ++ G +R RG D AACGQL
Sbjct: 297 EDQIQAFYDTLEARGVDVSVRRSRGKDAGAACGQLALK 334
>gi|213691945|ref|YP_002322531.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213523406|gb|ACJ52153.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320458052|dbj|BAJ68673.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 389
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 122/374 (32%), Positives = 187/374 (50%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L + M E+ E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFVDMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGAG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|312132647|ref|YP_003999986.1| fe-s-cluster redox enzyme [Bifidobacterium longum subsp. longum
BBMN68]
gi|311773598|gb|ADQ03086.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
subsp. longum BBMN68]
Length = 389
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 122/374 (32%), Positives = 188/374 (50%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L + M E+ E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|229820988|ref|YP_002882514.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333]
gi|229566901|gb|ACQ80752.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333]
Length = 383
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 117/367 (31%), Positives = 176/367 (47%), Gaps = 24/367 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + E +A+ +G R Q+ + + RD MSD+ R L
Sbjct: 33 VHLADLAPAERVDAVRGVG----EAAFRADQLSRHYFTHLTRDADAMSDLPAASREDLVA 88
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ P++V + + ++ ++E+V + + R TLCVSSQ GC +
Sbjct: 89 A---LLPQLVSPVRTMEADGGATVKTLWALFDD-AKVESVLMRYRDRTTLCVSSQAGCGM 144
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV LA + +P ++SN+V MG
Sbjct: 145 ACPFCATGQLGLTRNLSTAEIVEQVRLAAAACR---------AGDLPGGPTRLSNVVFMG 195
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ V ++ GL S R +T+ST G VP I ++ E I V LA+SL
Sbjct: 196 MGEPLANYRAVIGAVRRMVEPAPSGLGMSARNVTVSTVGLVPAIDKLAAEGIPVTLAVSL 255
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVPIN ++ + +DA R Y +++ R++ EY +++ +ND A L
Sbjct: 256 HAPDDELRSELVPINTRWSVGEALDAARRYFDITHR-RVSIEYALIRDVNDHGWRADLLA 314
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L +N IP NP PG + SD F ++ +G + IR RG DI
Sbjct: 315 KELVARGRGWVHVNPIPLNPTPGSRWTASDPGVEAEFVARLRHAGIPTTIRDTRGSDIDG 374
Query: 361 ACGQLKS 367
ACGQL +
Sbjct: 375 ACGQLAA 381
>gi|315081237|gb|EFT53213.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL078PA1]
Length = 405
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 100 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 155 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 205
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V L
Sbjct: 206 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 265
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 266 AVSLHAPDDELRDELIPVNRRWKVDELLDAASHYAEKTKR-RVSIEYALMKDINDQADRA 324
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 325 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 384
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 385 SEIDGACGQLAA 396
>gi|328956372|ref|YP_004373705.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans
PW2]
gi|328456696|gb|AEB07890.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans
PW2]
Length = 348
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 113/373 (30%), Positives = 180/373 (48%), Gaps = 30/373 (8%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N + + + +++ A+ ++ P R +Q+ +W++ + F M+++ + R
Sbjct: 5 NQM--RDIRSLSDDDIRSAVAQLDQP----MFRATQVLEWLHKKNASSFDEMTNLPKSFR 58
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + FS P + ++IS D TRK+LL F V +E V IP + + T C+S+Q
Sbjct: 59 TQLAERFSFAVPRQIAQQISRDRTRKYLLEFS-----DGVSVEAVGIPGRGKLTACISTQ 113
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C+FC TG L R+ TA E++ QVL + ++++
Sbjct: 114 AGCGMRCAFCATGLAGLARSCTAREMVDQVLHIARDFNE-----------------RVTS 156
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
+V MG GEP NFD ++L +D GL R +T+ST G +P I + LA
Sbjct: 157 VVFMGQGEPFANFDETVRALRTLNDPRGLKIGARHLTVSTCGIIPGIRAFAKLPEQFTLA 216
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH+ S RN L+P +KY L L +A + Y + RR T+E M++GIND+ +
Sbjct: 217 ISLHSASQQTRNQLMPGVKKYTLPRLYEALQEYVEAT-GRRPTYEIAMIEGINDTNPEMR 275
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ +G +NLI + +P E S + + + G + IR RG DI A
Sbjct: 276 AICDFCEGTLCHVNLIQLSDFPDSELHPSPLFKLEELQKRLTARGVQTTIRCSRGADIDA 335
Query: 361 ACGQLKSLSKRIP 373
ACGQLK
Sbjct: 336 ACGQLKQRRPNAR 348
>gi|313816750|gb|EFS54464.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA1]
gi|315099197|gb|EFT71173.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA2]
Length = 405
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 120/372 (32%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 100 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 155 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 205
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I V +E I V L
Sbjct: 206 VFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKAVTQEGIPVTL 265
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 266 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 324
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 325 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 384
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 385 SEIDGACGQLAA 396
>gi|311739708|ref|ZP_07713543.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305524|gb|EFQ81592.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 374
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 113/376 (30%), Positives = 178/376 (47%), Gaps = 32/376 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E + L +IG+P + R Q+ K Y + + M+DI R + +
Sbjct: 23 KHFADLTETERIDKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREAVKE 78
Query: 67 HFSIIYPEIV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + T K L R +E+V + R TLC+SSQ GC
Sbjct: 79 AFFPELMQPIRTTSTDDGETTKSLWRLH-----DGTLLESVLMRYPGRATLCISSQAGCG 133
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q + + G ++SN+V M
Sbjct: 134 MACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNVVFM 179
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V +++ D G S+R +T+ST G P I ++ +E LA+S
Sbjct: 180 GMGEPLANYKRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVS 239
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A L
Sbjct: 240 LHTPDDELRDGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADML 298
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L +N+IP NP PG E+ + Q F ++ G +R +G +I
Sbjct: 299 GRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGDEIA 358
Query: 360 AACGQLKSLSKRIPKV 375
AACGQL + +R K
Sbjct: 359 AACGQLAAD-EREDKS 373
>gi|23335166|ref|ZP_00120404.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bifidobacterium
longum DJO10A]
gi|189439272|ref|YP_001954353.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum DJO10A]
gi|322689304|ref|YP_004209038.1| hypothetical protein BLIF_1118 [Bifidobacterium longum subsp.
infantis 157F]
gi|189427707|gb|ACD97855.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
DJO10A]
gi|320460640|dbj|BAJ71260.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 389
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 122/374 (32%), Positives = 187/374 (50%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L + M E+ E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTAQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|108760323|ref|YP_629532.1| radical SAM protein [Myxococcus xanthus DK 1622]
gi|123374780|sp|Q1DCU1|RLMN1_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
AltName: Full=23S rRNA m2A2503 methyltransferase 1
gi|108464203|gb|ABF89388.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
Length = 359
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 26/370 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L + R L L G Q+W +Y R F + + E+ +L +H
Sbjct: 8 NLYDLTRPALGALLSGWGF----GPYHRDQLWTALYRRHATTFDELDGLKPELLRMLREH 63
Query: 68 FSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ E S T K LLR IETV + K R T+C+S+Q GC++
Sbjct: 64 TRLGQLATHHESFSSDGFTHKLLLRL-----DDGQTIETVLMRFKGRATVCISTQAGCAM 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L R+LT EI+ Q+L +L + G + N+V+MG
Sbjct: 119 GCVFCATGQMGLSRHLTPGEIVGQILHVNRILR--------------ASGETLRNVVLMG 164
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHA 245
MGEPL N+++ ++ + D++GL+ R ITLST G VP I R+ +E LA+SLH
Sbjct: 165 MGEPLHNYEHTMSAVDVLVDALGLAMGPRFITLSTVGVVPGIRRLADEERPIHLAVSLHG 224
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ R LVP R++PL+ L+DACR+Y RI FE+ ++ G ND+ A L ++
Sbjct: 225 ATDAERAALVPAGRRWPLDELMDACRYYSEKRKR-RIFFEWTLISGRNDTAEHAHTLGQL 283
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ A +N+IP NP G + S + + F + + S +R RG+DI A CGQL
Sbjct: 284 LRGMDAHVNVIPLNPTVGYDGGPSRPESVRAFQDVLATYDVPSTVRQRRGIDIDAGCGQL 343
Query: 366 KSLSKRIPKV 375
K+ +R +
Sbjct: 344 KATVERRSRR 353
>gi|33241085|ref|NP_876027.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|81663987|sp|Q7VA32|RLMN_PROMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|33238614|gb|AAQ00680.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 348
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 188/370 (50%), Gaps = 37/370 (10%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+G+ +LE L G R Q+ +W+Y +G+ + ++ + + R+ L
Sbjct: 5 KIQLLGLDLSQLERLALDHG----ESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLI 60
Query: 66 QH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q S+ V+ I+ D T K LL G IETV IP +R T+CVSSQ+GC
Sbjct: 61 QKGISVGGLVEVNRFIAGDRTIKLLL-----STGDGEIIETVGIPSGNRLTICVSSQIGC 115
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG L R+L EI+ QV + P SN+V
Sbjct: 116 PMGCQFCATGKDGLKRSLKVNEIVAQVFAVKKAFNRSP-----------------SNVVF 158
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGV 237
MGMGEPL N + V S+ + +G+ +RRIT+ST G + ++ E +
Sbjct: 159 MGMGEPLLNIEEVLSSICCLNKDLGIG--QRRITVSTVGVKNTLPQLAELALQFLGSVQF 216
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLHA + LR L+P + YP+++L++ CRHY L+ RR++FEY++L +ND
Sbjct: 217 TLALSLHAPNQKLRESLIPSAQNYPIKLLLEDCRHYLDLT-GRRVSFEYILLGHLNDHIE 275
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A L ++ G + +NLI +NP G + + + F + +++ G +R RGLD
Sbjct: 276 HAEELADLVGGFQSHVNLIAYNPIDGESFQRPSNQRVNIFIKTLQKRGIVVSLRASRGLD 335
Query: 358 ILAACGQLKS 367
AACGQL+S
Sbjct: 336 KNAACGQLRS 345
>gi|255325234|ref|ZP_05366340.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum
SK141]
gi|255297799|gb|EET77110.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum
SK141]
Length = 366
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 113/376 (30%), Positives = 178/376 (47%), Gaps = 32/376 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + E + L +IG+P + R Q+ K Y + + M+DI R + +
Sbjct: 15 KHFADLTETERIDKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREAVKE 70
Query: 67 HFSIIYPEIV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + T K L R +E+V + R TLC+SSQ GC
Sbjct: 71 AFFPELMQPIRTTSTDDGETTKSLWRLH-----DGTLLESVLMRYPGRATLCISSQAGCG 125
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EI+ Q + + G ++SN+V M
Sbjct: 126 MACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNVVFM 171
Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V +++ D G S+R +T+ST G P I ++ +E LA+S
Sbjct: 172 GMGEPLANYKRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVS 231
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A L
Sbjct: 232 LHTPDDELRDGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADML 290
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L +N+IP NP PG E+ + Q F ++ G +R +G +I
Sbjct: 291 GRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGDEIA 350
Query: 360 AACGQLKSLSKRIPKV 375
AACGQL + +R K
Sbjct: 351 AACGQLAAD-EREDKS 365
>gi|322691316|ref|YP_004220886.1| hypothetical protein BLLJ_1127 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456172|dbj|BAJ66794.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 389
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 122/374 (32%), Positives = 188/374 (50%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L + M E+ E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPRLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|239621375|ref|ZP_04664406.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515836|gb|EEQ55703.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 389
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 120/370 (32%), Positives = 186/370 (50%), Gaps = 26/370 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+ M E+ E ++G+P + R Q+ + + +D R
Sbjct: 39 HFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSEAAAA 94
Query: 68 FSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F V +++ + T K L + IE+V + +R TLC+SSQVGC +
Sbjct: 95 FFPRLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQVGCGM 149
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RN++ EI+ QV +A ++ D ++SNIV MG
Sbjct: 150 DCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEG---------RLSNIVFMG 200
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V LA+SL
Sbjct: 201 MGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSL 260
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A L
Sbjct: 261 HAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHAQLLA 319
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L A +N IP NP G ++ S +D F E + R+G ++ +R RG DI
Sbjct: 320 KRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDG 379
Query: 361 ACGQLKSLSK 370
ACGQL + +
Sbjct: 380 ACGQLAAKER 389
>gi|310828893|ref|YP_003961250.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612]
gi|308740627|gb|ADO38287.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612]
Length = 340
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 192/369 (52%), Gaps = 33/369 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
++ G E + + G P R Q+++W+Y + +++S+ +R L H
Sbjct: 3 NIFGKTLTECRMLMEEAGEP----SFRGKQLYQWLYEKKAAQLDDCTNLSKNLREKLKSH 58
Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++I + I + + TRK+L+R P IETV + +LCVSSQVGC +
Sbjct: 59 YNIEHGSIEKTQEDPEDGTRKYLIRLP-----DGNSIETVLMSYHHGYSLCVSSQVGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC + +R+L A EIL Q+ L G +ISN+V+MG
Sbjct: 114 GCAFCASTKGGKIRDLEAGEILDQIYLVEQ-----------------EAGIRISNVVIMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
+GEPL N+DN+ K L+I + G +R+ITLST G VP I + E ++ + LAISLH+
Sbjct: 157 IGEPLDNYDNILKFLNI--ANEGWGIGQRKITLSTCGLVPQIEALAELDLQINLAISLHS 214
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ R L+P+ +KY +E L+ C +Y + RITFEY ++ G ND P D L +I
Sbjct: 215 PFQERRETLMPVAKKYRIEELLKVCNNYFTKTKR-RITFEYALIDGFNDRPEDVAELAEI 273
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L +P INLI NP Y S +++ FS +K+ G + IR G +I AACGQL
Sbjct: 274 LGKMPCHINLIGLNPVTESAYKGS--RNVNFFSNELKKRGITCTIRRKIGDNIDAACGQL 331
Query: 366 KSLSKRIPK 374
+ + + +
Sbjct: 332 RQKADGMKR 340
>gi|317482872|ref|ZP_07941880.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
gi|291516841|emb|CBK70457.1| 23S rRNA m(2)A-2503 methyltransferase [Bifidobacterium longum
subsp. longum F8]
gi|316915717|gb|EFV37131.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
Length = 389
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 122/374 (32%), Positives = 188/374 (50%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L + M E+ E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFVDMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|23466064|ref|NP_696667.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum NCC2705]
gi|81753640|sp|Q8G481|RLMN_BIFLO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|23326790|gb|AAN25303.1| widely conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 389
Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats.
Identities = 122/374 (32%), Positives = 188/374 (50%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L + M E+ E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|260578946|ref|ZP_05846849.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734]
gi|258602920|gb|EEW16194.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734]
Length = 345
Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats.
Identities = 118/367 (32%), Positives = 187/367 (50%), Gaps = 31/367 (8%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
+ E L+E + ++G+P + R QI + Y R D M+D+ + R + +
Sbjct: 3 DLDEETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAAVKEALFP 58
Query: 71 IYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+ + + D TRK L R +E+V + R TLC+SSQ GC + C
Sbjct: 59 ELMQPMRNMDADDGETRKTLWRLH-----DGTMLESVLMRYPGRATLCISSQAGCGMACP 113
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG L RNL+ E++ Q A S + + G ++SNIV MGMGE
Sbjct: 114 FCATGQGGLDRNLSVGEMVEQARAAASTMQE--------------EGGRLSNIVFMGMGE 159
Query: 190 PLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
PL N+ V +++ G S+R IT+ST G P I ++ +E + V LA+SLH
Sbjct: 160 PLANYKRVVETIRKVSAPAPDGFGISQRNITVSTVGLAPAIRKLADEEMKVRLAVSLHTP 219
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++LR+ LVP+N ++ +E ++DA R+Y ++ RR++ EY +++ +ND P A L K L
Sbjct: 220 DDELRDELVPVNNRWSVEEVLDAARYYAD-TSGRRVSIEYALIRDMNDQPWRADLLGKKL 278
Query: 307 KG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+G +NLIP NP PG ++ S + F ++ G +R +G +I AACG
Sbjct: 279 RGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQEIAAACG 338
Query: 364 QLKSLSK 370
QL + +
Sbjct: 339 QLAAEER 345
>gi|315445031|ref|YP_004077910.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1]
gi|315263334|gb|ADU00076.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1]
Length = 365
Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats.
Identities = 119/368 (32%), Positives = 176/368 (47%), Gaps = 28/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ E A+ +G+P R Q+ + R I D M+D+ VR +
Sbjct: 19 RHFADLADTERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVRDQVAA 74
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
E E G + +L E+V + R T+C+SSQ GC +
Sbjct: 75 ALFPALLETAREIECDRGETRKVL----WRAVDKTTFESVLMRYPDRNTVCISSQAGCGM 130
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV A + L D G ++SNIV MG
Sbjct: 131 ACPFCATGQGGLKRNLSTAEILEQVRFASAELRD-------------RDGGRLSNIVFMG 177
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N++ V ++ S G S R +T+ST G P I ++ +E V LA+SL
Sbjct: 178 MGEPLANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLNVTLAVSL 237
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ ++ ++DA R+Y L+ RR++ EY +++ +ND P A L
Sbjct: 238 HTPDDELRDTLVPVNNRWKVDEVLDAARYYADLT-GRRVSIEYALIRDVNDQPWRADLLG 296
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ L +NLIP NP PG E+ S + F ++ G S +R RG +I A
Sbjct: 297 RKLHAKLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGREIAA 356
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 357 ACGQLAAQ 364
>gi|225352146|ref|ZP_03743169.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157393|gb|EEG70732.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 393
Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats.
Identities = 124/374 (33%), Positives = 185/374 (49%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L M +E +G+P + R Q+ Y + SD R
Sbjct: 38 KPPLHFADMTEDERIAKAKDLGLP----KFRVKQLANHYYGHFDVAAEEFSDFPAAKRAE 93
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F V +++ + T K L R IE+V + +R TLC+SSQV
Sbjct: 94 AAEAFFPTLITEVTRQVADEGTTIKTLWRL-----FDGSLIESVLMRYPTRTTLCISSQV 148
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++A EIL QV +A + D + ++SNI
Sbjct: 149 GCGMGCPFCATGQLGLTRNMSAGEILEQVRVAAKAMHDGEVAGGLG---------RLSNI 199
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 200 VFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A
Sbjct: 260 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F + + ++G ++ +R RG
Sbjct: 319 KLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQFLDILHKAGITATLRDTRGQ 378
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 379 DIDGACGQLAAKEQ 392
>gi|313813381|gb|EFS51095.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA1]
Length = 405
Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 183/372 (49%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ G+P R QI ++ R D +D+ + R + +
Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
+ V ++ T K L R G +E+V + + R TLC+SSQ
Sbjct: 100 PVLLTKVSQQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQA 154
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ +P ++ NI
Sbjct: 155 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEVPGASGRVHNI 205
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V + + G+ S R +TLST G VP I + +E I V L
Sbjct: 206 VFMGMGEPMANYRSVLTVIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTL 265
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND A
Sbjct: 266 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADRA 324
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S +D F E ++R +R RG
Sbjct: 325 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRG 384
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 385 SEIDGACGQLAA 396
>gi|304389793|ref|ZP_07371752.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304326969|gb|EFL94208.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 390
Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats.
Identities = 121/374 (32%), Positives = 185/374 (49%), Gaps = 26/374 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++ EA++ G+ R Q+ + + R D M+D++ R
Sbjct: 36 QHFADFDPQQRREAVVAAGM----RPFRADQVARHYFGRFEADPAQMTDLAPADRERARD 91
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +V + TRK L R ++E+V + R TLCVSSQVGC +
Sbjct: 92 LLPELITPVVTQVADKGWTRKTLWRL-----FDGAQVESVLMRYPKRVTLCVSSQVGCGM 146
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+A EIL QV LA D ++SN+V MG
Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQDGELGSPA----------RLSNLVFMG 196
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ ++ ++ + G S R + +ST G VP I ++ +E V LA+SL
Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LRN L+P+NR+Y ++ L+D Y + RR++ EY +++ +ND P A L
Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQAT-GRRVSIEYALIRDMNDHPWRAQLLA 315
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S + + F E ++++G S+ +R RG DI
Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375
Query: 361 ACGQLKSLSKRIPK 374
ACGQL + +K+ P
Sbjct: 376 ACGQLAAKAKQSPA 389
>gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 330
Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats.
Identities = 125/334 (37%), Positives = 176/334 (52%), Gaps = 22/334 (6%)
Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCI 97
WIY +G+ + MS++SQ +R L +H + E+V S T K+L R
Sbjct: 1 MSWIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVLELVRYTESIDQETIKFLWRLR---- 56
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+E+V I R T+CVSSQVGC C+FC +G Q RNL EI+ Q+L +
Sbjct: 57 -DGNLVESVLILSGIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAW 115
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
L S G K+S++V MGMGEPL N+++V S+ + S + S+RRI
Sbjct: 116 LS--------------SKGEKVSHVVYMGMGEPLKNYESVVASIRVLSHPDFCNISQRRI 161
Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
T+ST G V I R+ +E V L +SLHA + +R ++P RKYPLE ++++ Y
Sbjct: 162 TVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYARKYPLEEILESMDEYAQK 221
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
+ ITFEY +L GIND P A L +LKG +NLIP+NP PG ++K I
Sbjct: 222 TKRD-ITFEYTLLAGINDHPDHAHELAHLLKGKQCTVNLIPYNPIPGLRLKRPEKKAIKQ 280
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
F + S + R +G DI AACGQL +
Sbjct: 281 FRSVLYGSHIVNTCRYTKGDDIGAACGQLALQER 314
>gi|291456892|ref|ZP_06596282.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213]
gi|291382169|gb|EFE89687.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213]
Length = 389
Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats.
Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L + M + E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFVDMTPAQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRDE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIVEQVRVAAKMMRDGEVAGGEG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEKQFLEILHRAGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|313836797|gb|EFS74511.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA2]
gi|314929795|gb|EFS93626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL044PA1]
gi|314972224|gb|EFT16321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA3]
gi|328907651|gb|EGG27415.1| cfr family radical SAM enzyme [Propionibacterium sp. P08]
Length = 414
Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 181/372 (48%), Gaps = 33/372 (8%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
I + EE +A+ + +P R QI ++ R D +D+ + R + +
Sbjct: 53 IDLSVEERAQAVKDLSLPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 108
Query: 70 IIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQV 122
V + T K L R G +E+V + + R TLC+SSQ
Sbjct: 109 PALLTEVSRQSCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQA 163
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG + RN++ EI+ QVL A L+ IP ++ NI
Sbjct: 164 GCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRLIA---------AGEIPGASGRVHNI 214
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEP+ N+ +V + + G+ S R +T+ST G VP I + EE V L
Sbjct: 215 VFMGMGEPMANYRSVLTVIRTLTADGPDGMGMSARALTVSTVGLVPRIKALTEERIPVTL 274
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ L+P+NR++ ++ L+DA HY S R++ EY ++K IND A
Sbjct: 275 AVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKSKR-RVSIEYALMKDINDQADRA 333
Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
L + ++ A +NLIP NP PG + S ++D F E ++R +R RG
Sbjct: 334 AVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRREDQDAFVETLERWKIPVTVRDTRG 393
Query: 356 LDILAACGQLKS 367
+I ACGQL +
Sbjct: 394 SEIDGACGQLAA 405
>gi|194333982|ref|YP_002015842.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271]
gi|254807193|sp|B4S808|RLMN_PROA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|194311800|gb|ACF46195.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271]
Length = 359
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 191/375 (50%), Gaps = 30/375 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K+++ R+ELEE + IG P R R +Q+ +W+Y DF M+ IS+ +R
Sbjct: 1 MTTKQNIKRYSRKELEELMQSIGEP----RFRAAQLHRWLYSDRASDFHEMTTISKSLRE 56
Query: 63 LLNQHFSI-----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
L++ + + + V++ + TRK+L++ + +ETV IP + R T+C
Sbjct: 57 TLDRKYFLPQCSMSSTQCVEDSSADSTTRKFLVQLHDQEA-----VETVLIPAEGRNTVC 111
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VS+QVGC L CSFC TG RNL A EI QV L + L
Sbjct: 112 VSTQVGCPLHCSFCATGYMGFTRNLNAAEIAEQVFLVQDYLDAIGCGA------------ 159
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEI- 235
++NIV MGMGEPL + V +S+ I SD + L S+++ITLST G +P I +
Sbjct: 160 -VTNIVYMGMGEPLLALEEVIESVGILSDTTYRLHISQKKITLSTVGLLPEIGMLARSGL 218
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
LAISLH+ + R L+P R YPL+ L Y + + +T Y++LK IND+
Sbjct: 219 TTNLAISLHSADQETRASLMPSARDYPLKELRKTLIQYTSET-GQPVTLVYMLLKEINDT 277
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
DAL L+++ + KINLI +NP ++ + ++ F + +G + +R G
Sbjct: 278 QEDALKLVRLARSFLCKINLIDYNPIVNIKFDSAGEQRKNIFIRTLVDAGLNVTVRKSHG 337
Query: 356 LDILAACGQLKSLSK 370
I AACGQL K
Sbjct: 338 SSINAACGQLAINKK 352
>gi|298346468|ref|YP_003719155.1| putative Fe-S-cluster redox protein [Mobiluncus curtisii ATCC
43063]
gi|298236529|gb|ADI67661.1| possible Fe-S-cluster redox protein [Mobiluncus curtisii ATCC
43063]
Length = 390
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 121/374 (32%), Positives = 184/374 (49%), Gaps = 26/374 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++ EA++ G+ R Q+ + + R D M+D+ R
Sbjct: 36 QHFADFDPQQRREAVVAAGM----RPFRADQVARHYFGRFEADPAQMTDLGPADRERARD 91
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +V + TRK L R ++E+V + R TLCVSSQVGC +
Sbjct: 92 LLPELITPVVTQVADKGWTRKTLWRL-----FDGAQVESVLMRYPKRVTLCVSSQVGCGM 146
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+A EIL QV LA D ++SN+V MG
Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAAKAAQDGELGSPS----------RLSNLVFMG 196
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ ++ ++ + G S R + +ST G VP I ++ +E V LA+SL
Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LRN L+P+NR+Y ++ L+D Y + RR++ EY +++ +ND P A L
Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQAT-GRRVSIEYALIRDMNDHPWRAQLLA 315
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S + + F E ++++G S+ +R RG DI
Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375
Query: 361 ACGQLKSLSKRIPK 374
ACGQL + +K+ P
Sbjct: 376 ACGQLAAKAKQSPA 389
>gi|289178553|gb|ADC85799.1| Radical SAM family enzyme [Bifidobacterium animalis subsp. lactis
BB-12]
Length = 430
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 183/370 (49%), Gaps = 26/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ +E ++G+P + R Q+ Y D +D R + +
Sbjct: 77 VHFADLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAR 132
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F V +++ D T K L +IE+V + +R TLC+SSQVGC
Sbjct: 133 EFFPTLIREVTRQVADDGQTIKTLWEL-----FDGSKIESVLMRYPNRTTLCISSQVGCG 187
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++ EIL QV +A +++ ++SN+V M
Sbjct: 188 MGCPFCATGQLGLTRNMSTGEILEQVRIAAAMMERGEVAGGPG---------RLSNVVFM 238
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGEP+ N+ + ++ S G S R IT+ST G VP I R+ +E + V LA+S
Sbjct: 239 GMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVS 298
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N LR+ LVP+NR++ ++ ++DA Y L++ RR++ EY +++GIND A L
Sbjct: 299 LHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQL 357
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L A +N IP NP G ++ S +D F E + +G ++ +R RG DI
Sbjct: 358 ANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDID 417
Query: 360 AACGQLKSLS 369
ACGQL + +
Sbjct: 418 GACGQLAAKT 427
>gi|288818052|ref|YP_003432399.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
gi|288787451|dbj|BAI69198.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
gi|308751653|gb|ADO45136.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
Length = 360
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 208/365 (56%), Gaps = 32/365 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
++ EEL+E+L K+G+P + R Q+ W+Y + DF M+DIS+E R LL +++
Sbjct: 4 ILRYNLEELKESLSKMGMP----KYRAVQVLGWVYKKFQTDFDAMTDISKEDRKLLKENY 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ E+ DE + + + K+L + IE+V I E+ TLCVSSQ+GC++ C
Sbjct: 60 RVHTLELTDE-VHAEDSVKYLFKTL-----DGHTIESVLIRERDHLTLCVSSQIGCAVGC 113
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC T L RNL +EI+ Q+L + + + ++I N+V MGMG
Sbjct: 114 KFCATAIDGLTRNLRTDEIIDQLLQIQKKI----------------LPQRIRNVVFMGMG 157
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHA 245
EPL N++NV+K++ + G+ SKRRI++STSG + I R+ E+ V LA+SL+A
Sbjct: 158 EPLANYENVRKAVEVMVSPWGIDLSKRRISVSTSGLIAQIKRMSEDPIMREVNLAVSLNA 217
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
S LR +++PI++ L L+ + YP RRI EYV++KG+ND DAL+L ++
Sbjct: 218 PSQKLRELIMPISKTNNLSELMQVLKEYP-YPKGRRIMLEYVLIKGLNDKKEDALSLAQL 276
Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ K+NLIP+NP P Y +++ F + + ++G S+ +R +G++I ACG
Sbjct: 277 IGKYKNKFKVNLIPYNPDPELPYERPSIEEVYEFQKVLWQTGISTFVRLSKGINIFGACG 336
Query: 364 QLKSL 368
QL+
Sbjct: 337 QLRQR 341
>gi|315657100|ref|ZP_07909984.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492203|gb|EFU81810.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 390
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 121/374 (32%), Positives = 184/374 (49%), Gaps = 26/374 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++ EA++ G+ R Q+ + + R D M+D+ R
Sbjct: 36 QHFADFDPQQRREAVVAAGM----RPFRADQVARHYFGRFEADPAQMTDLGPADRERARD 91
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +V + TRK L R ++E+V + R TLCVSSQVGC +
Sbjct: 92 LLPELITPVVTQVADKGWTRKTLWRL-----FDGAQVESVLMRYPKRVTLCVSSQVGCGM 146
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+A EIL QV LA D ++SN+V MG
Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQDGELGSPA----------RLSNLVFMG 196
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ ++ ++ + G S R + +ST G VP I ++ +E V LA+SL
Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LRN L+P+NR+Y ++ L+D Y + RR++ EY +++ +ND P A L
Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQAT-GRRVSIEYALIRDMNDHPWRAQLLA 315
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S + + F E ++++G S+ +R RG DI
Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375
Query: 361 ACGQLKSLSKRIPK 374
ACGQL + +K+ P
Sbjct: 376 ACGQLAAKAKQSPA 389
>gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 389
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 123/374 (32%), Positives = 188/374 (50%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L + M E+ E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S +D F E + RSG ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRSGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|213421342|ref|ZP_03354408.1| hypothetical protein Salmonentericaenterica_27889 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 317
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 137/322 (42%), Positives = 185/322 (57%), Gaps = 22/322 (6%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
+N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +
Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSS
Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC+L C FC T Q RNL EI+ QV A ++G + R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295
Query: 299 ALNLIKILKGIPAKINLIPFNP 320
A L ++LK P KINLIP+NP
Sbjct: 296 AHQLAELLKETPCKINLIPWNP 317
>gi|33863770|ref|NP_895330.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. MIT 9313]
gi|81577096|sp|Q7V5P5|RLMN_PROMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|33635353|emb|CAE21678.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 356
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 122/369 (33%), Positives = 186/369 (50%), Gaps = 37/369 (10%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+G ELE + G P R Q+ +W+Y +G R F+ ++ + + R L Q
Sbjct: 13 LLGCSATELEGWAVAEGQPA----FRGRQLHEWLYAKGARSFEAITVLPKSWRLSLQQRG 68
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+I V+ ++ D T K LL IE+V IP + R T+C+SSQVGC +
Sbjct: 69 ITIGRLLEVNRAVAVDDTTKLLLATV-----DGETIESVGIPTQQRLTVCLSSQVGCPMA 123
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC +G L R+L EI+ QVL R + R+ S++V MGM
Sbjct: 124 CRFCASGKGGLQRSLATHEIVDQVLSLREAMD-----------------RRPSHVVFMGM 166
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
GEPL N + V ++ + +G++ +RRIT+ST G + + E LA
Sbjct: 167 GEPLLNIEAVLAAIRCLNIDLGIA--QRRITVSTVGVPHTLPHLAELAMKRLGRAQFTLA 224
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + +LR L+P YP E L+ CRHY ++ RR+TFEY++L +ND P+ A
Sbjct: 225 VSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVT-GRRVTFEYILLGALNDQPQHAE 283
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++G + +NLI +NP + + + I F +++ G + +R RGLD A
Sbjct: 284 ELADRVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLDQNA 343
Query: 361 ACGQLKSLS 369
ACGQL+
Sbjct: 344 ACGQLRRQH 352
>gi|227875938|ref|ZP_03994061.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC
35243]
gi|307700221|ref|ZP_07637262.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16]
gi|227843470|gb|EEJ53656.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC
35243]
gi|307614603|gb|EFN93831.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16]
Length = 401
Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 181/375 (48%), Gaps = 25/375 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ E ++G+ R QI + + R D Q M+D++ R L Q
Sbjct: 31 IHFADLEPAVRRETAAELGL----KAFRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +V + D T+K L R E+E+V + R TLCVSSQVGC +
Sbjct: 87 LLPQLITPVVTKTADQDWTQKTLWRL-----FDGAEVESVLMRYPKRVTLCVSSQVGCGM 141
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+A EIL QV + + ++SNIV MG
Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSARAAA---------TGALGGQETRLSNIVFMG 192
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ + SL G S R + +ST G VP I R+ E I V LA+SL
Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSL 252
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+P+NR Y + L+DA Y + RR++ EY +++ +ND P A L
Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFE-TTGRRVSIEYALIRDMNDHPWRAQLLA 311
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S + + F+ +++SG S+ +R RG DI
Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371
Query: 361 ACGQLKSLSKRIPKV 375
ACGQL + SK K
Sbjct: 372 ACGQLATASKNHKKT 386
>gi|26554015|ref|NP_757949.1| hypothetical protein MYPE5630 [Mycoplasma penetrans HF-2]
gi|81747712|sp|Q8EVK0|RLMN_MYCPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|26454023|dbj|BAC44353.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
Length = 352
Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats.
Identities = 116/368 (31%), Positives = 190/368 (51%), Gaps = 27/368 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ S+ +EL++ L K I QI+ WIY + + F M +IS+E
Sbjct: 1 MLMNSIYSFTLQELKKELTKNNI----KAFVAEQIFDWIYSKHVDSFDEMKNISKENIEK 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L Q FS + ++ K+LL+ IETV + ++CV+SQ+
Sbjct: 57 LKQLFSFENMVVDKLQVDKHDGTVKFLLKLE-----DGNFIETVIMKFNYGYSVCVTSQI 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC +G + RN+T E + Q ++A+ + + K++++
Sbjct: 112 GCNMACKFCASGLIRKKRNITVGEFIKQFIIAKEYV-------------EKNFNDKLTHM 158
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V+MG+GEP NF+N+ + + GL S R+IT+ST G V I + + V LAI
Sbjct: 159 VVMGIGEPFDNFENLIQFFEVIKQQKGLCISPRKITVSTCGLVEKIKEFADLKNQVNLAI 218
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
LHA +N++RN ++PIN+ Y L+ +I+A +Y ++ R+T EY+++K +NDS +A+
Sbjct: 219 LLHAPNNEIRNKIMPINKVYSLDKVIEAMDYYIKVTKR-RVTIEYILIKDVNDSDENAVE 277
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L K+LKG +NLIP+N Y S + F + +K++ + IR RG I AA
Sbjct: 278 LAKLLKGKLCYVNLIPYNKVVENNYFRSVRGK--QFFDVLKKNNIQATIRLERGSSIDAA 335
Query: 362 CGQLKSLS 369
CGQL+
Sbjct: 336 CGQLRIKK 343
>gi|145224701|ref|YP_001135379.1| radical SAM protein [Mycobacterium gilvum PYR-GCK]
gi|205829813|sp|A4TC75|RLMN_MYCGI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|145217187|gb|ABP46591.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium gilvum
PYR-GCK]
Length = 365
Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats.
Identities = 119/368 (32%), Positives = 176/368 (47%), Gaps = 28/368 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ E A+ +G+P R Q+ + R I D M+D+ VR +
Sbjct: 19 RHFADLADTERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVRDQVGA 74
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
E E G + +L E+V + R T+C+SSQ GC +
Sbjct: 75 ALFPELLEAAREIECDRGETRKVL----WRAVDKTTFESVLMRYPDRNTVCISSQAGCGM 130
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV A + L D G ++SNIV MG
Sbjct: 131 ACPFCATGQGGLKRNLSTAEILEQVRFASAELRD-------------REGGRLSNIVFMG 177
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N++ V ++ S G S R +T+ST G P I ++ +E V LA+SL
Sbjct: 178 MGEPLANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLNVTLAVSL 237
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ ++ ++DA R+Y L+ RR++ EY +++ +ND P A L
Sbjct: 238 HTPDDELRDTLVPVNNRWKVDEVLDAARYYADLT-GRRVSIEYALIRDVNDQPWRADLLG 296
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ L +NLIP NP PG E+ S + F ++ G S +R RG +I A
Sbjct: 297 RKLHATLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGREIAA 356
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 357 ACGQLAAQ 364
>gi|157273452|gb|ABV27351.1| radical SAM enzyme Cfr family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 363
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 132/368 (35%), Positives = 197/368 (53%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++G +++ + + G+P R Q+++ ++ + + + +S + + VR L
Sbjct: 11 QDMLGQTCQQMCALMAERGLPA----YRGRQLFQALHRQLVETPEEISVLPRAVRTELAA 66
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
S+ + S DGTR++L + IETV+IP++ R TLC+SSQ GC +
Sbjct: 67 EASLQPLSLAGIFESLDGTRRYLFKVH-----DGYSIETVWIPDRGRVTLCLSSQAGCPM 121
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC T T L RNLTA EI+ QVL + N+V+MG
Sbjct: 122 RCAFCATATLGLQRNLTAGEIVAQVLYVLRDTVRQRQQPRPAAV----------NLVLMG 171
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N+D+V +L + +D GL RR+TLST G VP I +G E LA+SL A
Sbjct: 172 MGEPLLNYDHVLHALRVLADPEGLHIVPRRVTLSTVGIVPRIIALGREPDRPRLAVSLTA 231
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++LR L+P+N YPLE L +AC +P RITFEYV+L G+NDS A L++
Sbjct: 232 ATDELRARLMPVNLTYPLEALREACLAFPR-HPGERITFEYVLLDGVNDSEDQARALLRW 290
Query: 306 LKGIPA----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L + A K+NLIP NP PG + + ++ F ++ G + +R PRG DI AA
Sbjct: 291 LAPLRAQEAAKVNLIPHNPVPGIPFRPPKLERVLRFQALLRAKGLPTYLRRPRGQDISAA 350
Query: 362 CGQLKSLS 369
CG L + S
Sbjct: 351 CGMLAATS 358
>gi|318042314|ref|ZP_07974270.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
CB0101]
Length = 356
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 123/377 (32%), Positives = 184/377 (48%), Gaps = 42/377 (11%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L+GM LE+ + G R Q+ W+Y +G R +S + + R L
Sbjct: 3 QPLLGMGLSALEDWAKQHG----QAAFRGRQLHDWLYAKGARQLADVSVLPKGFREQLAA 58
Query: 67 HFS------IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
+ + ++ DGT K LL + IETV IP + R T+CVSS
Sbjct: 59 QPPDGAFDWMGRSRELHRSVARDGTTKLLLGTH-----DGLSIETVGIPAEGRLTVCVSS 113
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TG L R+L EI+ QVL R ++ P S
Sbjct: 114 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMEQRP-----------------S 156
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------- 233
++V MGMGEPL N + V ++ +G++ +R+IT+ST G + R+ E
Sbjct: 157 HVVFMGMGEPLLNIEAVLDAIQCLCTDLGMA--QRQITVSTVGVPRTLPRLAELALERLG 214
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
LA+SLHA LR L+P YP+E L++ CR Y ++ RR++FEY++L G+N
Sbjct: 215 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVAIT-GRRVSFEYILLGGLN 273
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D PR A L ++L+G + +NLIP+NP E+ + F ++ + +R
Sbjct: 274 DQPRHAAALAQLLRGFQSHVNLIPYNPIEEEEFQRPTPAAVDGFRRALQDRHVAVSVRAS 333
Query: 354 RGLDILAACGQLKSLSK 370
RGLD AACGQL+ +
Sbjct: 334 RGLDADAACGQLRRRLE 350
>gi|255568836|ref|XP_002525389.1| catalytic, putative [Ricinus communis]
gi|223535352|gb|EEF37027.1| catalytic, putative [Ricinus communis]
Length = 861
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 134/363 (36%), Positives = 197/363 (54%), Gaps = 25/363 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---GIRDFQGMSDISQEVRH 62
K L GM ELE+ + G M +WK +Y F + ++++ +
Sbjct: 77 KVLLKGMSYTELEKWVQSHGFRPGQAMM----LWKRLYANNNTLAHYFDELEGLNKDFKK 132
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L++H + + D + DGT+K L R V + ++ R T+CVSSQV
Sbjct: 133 MLSEHARLKAISMEDVVTASDGTKKILFRLDDEM----VIETVIIPCDRGRTTVCVSSQV 188
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FCYTG L R+LT EI+ QV+ A+ LL G I+N+
Sbjct: 189 GCAMNCQFCYTGRMGLKRHLTTAEIVDQVVSAQRLLTSDAGS--------------ITNV 234
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N +NV K+ I GL FS R++T+STSG VP + R E LA+S
Sbjct: 235 VFMGMGEPLQNIENVIKAADIMVHDQGLHFSPRKVTISTSGLVPQLKRFLRESNCALAVS 294
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A ++++RN ++PINRKY L +L+D R N ++ FEYVML G+NDS DA L
Sbjct: 295 LNATTDEVRNWIMPINRKYNLGLLLDTLRKELHFKNNYKVLFEYVMLAGVNDSLEDAERL 354
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++GIP KINLI FNP G ++ + ++ ++ F + + + +R RG D +AAC
Sbjct: 355 SDLVQGIPCKINLIQFNPHSGSQFRPTSKEKMIEFRNILAEAKCTVFLRDSRGDDQMAAC 414
Query: 363 GQL 365
GQL
Sbjct: 415 GQL 417
>gi|116787825|gb|ABK24655.1| unknown [Picea sitchensis]
Length = 464
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 157/388 (40%), Positives = 214/388 (55%), Gaps = 36/388 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRG--IRDFQGMSDISQEV 60
K + GM ELE + + R Q +WK +Y G + M +S++
Sbjct: 102 KTLVKGMTYHELEAWVQSL-------SYRAGQAMMLWKCLYGNGMWAQHVDEMQALSKQF 154
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVS 119
R L + + D + DGTRK L G + IETV IP E+ R TLCVS
Sbjct: 155 RATLEKTAEFSVFSLKDVYSASDGTRKILFSL-----GDGLIIETVLIPCERGRTTLCVS 209
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC++ C FCYTG L RNLTA EI+ QV+ AR + G I
Sbjct: 210 SQVGCAMNCQFCYTGRMGLKRNLTAAEIVEQVVYARRHFTNEVG--------------PI 255
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+N+V MGMGEPL NFDNV K+ I D GL FS R++T+STSG VP I R E +L
Sbjct: 256 TNVVFMGMGEPLHNFDNVLKAAEIMVDCHGLHFSPRKVTVSTSGLVPQIRRFIRESPCVL 315
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SL+A ++++RN ++PINRKY L+ML+ R G + ++ FEYVML GINDS DA
Sbjct: 316 AVSLNATTDEVRNWIMPINRKYNLDMLLTMLREEIGQRHKFKVLFEYVMLLGINDSLDDA 375
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L+ +++GIP KINLI FNP G ++ S Q+ ++ F + + +GY++ IR RG D +
Sbjct: 376 RRLVNLVEGIPCKINLISFNPHEGSSFIPSTQEQMLAFHKIVADAGYATFIRHSRGNDQM 435
Query: 360 AACGQLK----SLSKRIPKVPRQEMQIT 383
AACGQL S R+ R + +
Sbjct: 436 AACGQLGKPGNSQPPRMRAPERFQATLA 463
>gi|306819217|ref|ZP_07452928.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239]
gi|304647999|gb|EFM45313.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239]
Length = 401
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 181/375 (48%), Gaps = 25/375 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ E ++G+ R QI + + R D Q M+D++ R L Q
Sbjct: 31 IHFADLEPAVRRETAAELGL----KAFRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +V + D T+K L R E+E+V + R TLCVSSQVGC +
Sbjct: 87 LLPQLITPVVTKTADQDWTQKTLWRL-----FDGAEVESVLMRYPKRVTLCVSSQVGCGM 141
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+A EIL QV + + ++SNIV MG
Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSARAAA---------TGALGGQETRLSNIVFMG 192
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ + SL G S R + +ST G VP I R+ E I V LA+SL
Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGILRLASEGIPVTLAVSL 252
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+P+NR Y + L+DA Y + RR++ EY +++ +ND P A L
Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFE-TTGRRVSIEYALIRDMNDHPWRAQLLA 311
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S + + F+ +++SG S+ +R RG DI
Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371
Query: 361 ACGQLKSLSKRIPKV 375
ACGQL + SK K
Sbjct: 372 ACGQLATASKNHKKT 386
>gi|114775703|ref|ZP_01451271.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1]
gi|114553814|gb|EAU56195.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1]
Length = 364
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 140/376 (37%), Positives = 203/376 (53%), Gaps = 21/376 (5%)
Query: 1 MNFLKKES------LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMS 54
M +K + L + +L+ + P + R Q+ W +GI + M
Sbjct: 1 MTQTRKTATADLAQLSALNLSDLQGLMEAWMQP----KFRAKQVLDWC-NKGILNPALMK 55
Query: 55 DISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
+I +R L ++ + S DGTRK++ + IE V+IPE+ RG
Sbjct: 56 NIPDALRDRLLTSLMCEPLRLIRRECSTDGTRKYVFALNRPRLA-GKMIEAVFIPEEKRG 114
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+C+SSQVGC L C FC+TGTQ NL+A EI+ QVL ++ L P +D+
Sbjct: 115 TVCISSQVGCVLDCPFCHTGTQGFEGNLSAGEIVAQVLAIKADLRHEPMTDDLHND---- 170
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+++IV MGMGEPL N + V SL+I D GL S+RRIT+STSG P I R+G
Sbjct: 171 ----VTHIVYMGMGEPLANEEGVHGSLAILMDEDGLKLSRRRITVSTSGLTPQIERLGAV 226
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
V LAISLH+ ++ R++LVPINRK+PL L + YP + IT EYV+L G+ND
Sbjct: 227 HPVNLAISLHSAIDEKRDLLVPINRKHPLAQLRECLDAYPLATQRH-ITLEYVLLDGVND 285
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
D L + + +NLI FNP+PG Y + ++ + F++ + G + +R R
Sbjct: 286 QAEDLAALARFVNPEREWVNLIQFNPYPGTSYRGTAKESMNQFAQHLISKGIRATVRRSR 345
Query: 355 GLDILAACGQLKSLSK 370
G DI+AACGQLK+ +K
Sbjct: 346 GQDIMAACGQLKADTK 361
>gi|269977915|ref|ZP_06184869.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1]
gi|269933881|gb|EEZ90461.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1]
Length = 401
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 128/375 (34%), Positives = 182/375 (48%), Gaps = 25/375 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ E ++G+ R QI + + R D Q M+D++ R L Q
Sbjct: 31 IHFADLEPAVRRETAAELGL----KAFRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +V + D T+K L R E+E+V + R TLCVSSQVGC +
Sbjct: 87 LLPQLITPVVTKTADQDWTQKTLWRL-----FDGAEVESVLMRYPKRVTLCVSSQVGCGM 141
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+A EIL QV + + ++SNIV MG
Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSARAAA---------TGALGGQETRLSNIVFMG 192
Query: 187 MGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGEPL N+ + SL G S R + +ST G VP I R+ E I V LA+SL
Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSL 252
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ L+P+NR Y + L+DA Y ++ RR++ EY +++ +ND P A L
Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFEIT-GRRVSIEYALIRDMNDHPWRAQLLA 311
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S + + F+ +++SG S+ +R RG DI
Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371
Query: 361 ACGQLKSLSKRIPKV 375
ACGQL + SK K
Sbjct: 372 ACGQLATASKNHKKT 386
>gi|158313018|ref|YP_001505526.1| radical SAM protein [Frankia sp. EAN1pec]
gi|205829763|sp|A8L6D8|RLMN_FRASN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|158108423|gb|ABW10620.1| radical SAM enzyme, Cfr family [Frankia sp. EAN1pec]
Length = 385
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 119/376 (31%), Positives = 177/376 (47%), Gaps = 18/376 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR--GIRDFQGMSDISQEVRHLL 64
L + R+E +G+P R Q+ + + D M+D+ +R L
Sbjct: 23 RHLADLSRDERRAVATSLGLPA----FRADQLARHYFTHHLRADDADLMTDLPASIRPAL 78
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ G + + +IE+V + R T+CVSSQ GC
Sbjct: 79 VEAMLPRLLTPATALDCDGGQTRKTV----WRTVDGAKIESVLMRYPQRATVCVSSQAGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG L RNL+ EI+ QV+ A + E + SN+V
Sbjct: 135 GMGCPFCATGQGGLTRNLSTAEIVEQVVDAARTMAARTTAEGGLPGGPGRL----SNVVF 190
Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
MGMGEPL N+ + +L D GL S R +T+ST G VP I R+ E V LA+
Sbjct: 191 MGMGEPLANYAALLAALHRLIDPAPDGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTLAV 250
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++LR+ LVPIN ++P+ ++ A Y ++ RR++ EY ++ G+NDSP A
Sbjct: 251 SLHAPDDELRDELVPINTRWPVAEVLAAAWEYARVT-GRRVSIEYALIDGVNDSPERADA 309
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L G A +NLIP NP G + S + F E ++ G ++ +R RG +I AA
Sbjct: 310 LAALLVGQLAHVNLIPLNPTGGSSWQASAPRGQRVFVERLRARGVAATVRDTRGREIAAA 369
Query: 362 CGQLKSLSKRIPKVPR 377
CGQL + + R
Sbjct: 370 CGQLAAEPPVRSRAGR 385
>gi|296454242|ref|YP_003661385.1| Cfr family radical SAM enzyme [Bifidobacterium longum subsp. longum
JDM301]
gi|296183673|gb|ADH00555.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
longum JDM301]
Length = 389
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 122/374 (32%), Positives = 185/374 (49%), Gaps = 28/374 (7%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L M E+ E ++G+P + R Q+ + + +D R
Sbjct: 35 KPPLHFADMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F V +++ + T K L + IE+V + +R TLC+SSQV
Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKL-----FDGSLIESVLMRYPTRTTLCISSQV 145
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++ EI+ QV +A ++ D ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEG---------RLSNI 196
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L A +N IP NP G ++ S D F E + R+G ++ +R RG
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPGDEQRFLEILHRAGITATLRDTRGQ 375
Query: 357 DILAACGQLKSLSK 370
DI ACGQL + +
Sbjct: 376 DIDGACGQLAAKER 389
>gi|310819181|ref|YP_003951539.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
aurantiaca DW4/3-1]
gi|309392253|gb|ADO69712.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
aurantiaca DW4/3-1]
Length = 360
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 130/373 (34%), Positives = 188/373 (50%), Gaps = 29/373 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLL 64
SL + R L + L + G +W+ +Y R ++ + + E+ L
Sbjct: 10 VSLHDLSRAALGQRLAEWGYSA----FHRDALWEALYRRHVKSLDELEGLVRP-ELVTRL 64
Query: 65 NQHFSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+H + P + E S T K LLR IETV + K R T+CVS+Q G
Sbjct: 65 REHTCLRSPTVHHETFSSDGHTHKLLLR-----QHDGQTIETVLMRFKGRATVCVSTQAG 119
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG L R+L+ EI+ QVL LL G + NIV
Sbjct: 120 CAMGCVFCATGQMGLARHLSPGEIVAQVLHVVGLLRQ--------------TGETLRNIV 165
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAIS 242
+MGMGEPL N+D +++ I D GL+ R ITLST G VP I R+ +E LA+S
Sbjct: 166 LMGMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVS 225
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++ R LVP+ +++PL L+DACR+Y RRI FE+ ++ G ND+ A L
Sbjct: 226 LHGATDAERAALVPVGKRWPLNELMDACRYYSEKR-GRRIFFEWTLIAGQNDTVDQAHTL 284
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG+ A +N+IP NP G S + + F + + G S +R RG+DI A C
Sbjct: 285 GQLLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGC 344
Query: 363 GQLKSLSKRIPKV 375
GQLK+ +R +
Sbjct: 345 GQLKAAVERPRRS 357
>gi|115379954|ref|ZP_01467009.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
gi|115363034|gb|EAU62214.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
Length = 384
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 130/373 (34%), Positives = 188/373 (50%), Gaps = 29/373 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLL 64
SL + R L + L + G +W+ +Y R ++ + + E+ L
Sbjct: 34 VSLHDLSRAALGQRLAEWGYSA----FHRDALWEALYRRHVKSLDELEGLVRP-ELVTRL 88
Query: 65 NQHFSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+H + P + E S T K LLR IETV + K R T+CVS+Q G
Sbjct: 89 REHTCLRSPTVHHETFSSDGHTHKLLLR-----QHDGQTIETVLMRFKGRATVCVSTQAG 143
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC TG L R+L+ EI+ QVL LL G + NIV
Sbjct: 144 CAMGCVFCATGQMGLARHLSPGEIVAQVLHVVGLLRQ--------------TGETLRNIV 189
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAIS 242
+MGMGEPL N+D +++ I D GL+ R ITLST G VP I R+ +E LA+S
Sbjct: 190 LMGMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVS 249
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++ R LVP+ +++PL L+DACR+Y RRI FE+ ++ G ND+ A L
Sbjct: 250 LHGATDAERAALVPVGKRWPLNELMDACRYYSEKR-GRRIFFEWTLIAGQNDTVDQAHTL 308
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LKG+ A +N+IP NP G S + + F + + G S +R RG+DI A C
Sbjct: 309 GQLLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGC 368
Query: 363 GQLKSLSKRIPKV 375
GQLK+ +R +
Sbjct: 369 GQLKAAVERPRRS 381
>gi|115438803|ref|NP_001043681.1| Os01g0640800 [Oryza sativa Japonica Group]
gi|113533212|dbj|BAF05595.1| Os01g0640800 [Oryza sativa Japonica Group]
gi|218188735|gb|EEC71162.1| hypothetical protein OsI_03021 [Oryza sativa Indica Group]
gi|222618932|gb|EEE55064.1| hypothetical protein OsJ_02780 [Oryza sativa Japonica Group]
Length = 405
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 135/363 (37%), Positives = 194/363 (53%), Gaps = 24/363 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62
+ L GM ELE + G M +WK +Y + + ++ ++++ R
Sbjct: 44 SRVMLKGMDYPELENWVRSQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRK 99
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+L H + + D + DGTRK L V V R T+CVSSQV
Sbjct: 100 MLTDHADLKALTVKDILNASDGTRKILFSLEDGS----VIETVVIPCTSGRTTVCVSSQV 155
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC+TG L ++L+ EI+ Q + AR L D G I+N+
Sbjct: 156 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------ITNV 201
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N DNV K+ +I D GL FS R++T+STSG VP I R +E LA+S
Sbjct: 202 VFMGMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVS 261
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A ++++RN ++PINRKY L +L+ R L ++ FEYVML G+NDS DA L
Sbjct: 262 LNATTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRL 321
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +++GIP KINLI FNP G ++ + + I+ F + + G +R RG D +AAC
Sbjct: 322 VDLVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAAC 381
Query: 363 GQL 365
GQL
Sbjct: 382 GQL 384
>gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C]
gi|205829744|sp|B1I501|RLMN_DESAP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator
MP104C]
Length = 318
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 125/341 (36%), Positives = 179/341 (52%), Gaps = 26/341 (7%)
Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCI 97
+W++ +G M+++ R L + E++D ++S T K+LL
Sbjct: 2 AEWVFKQGALSLAEMTNLPAGFRKRLAGEAVVGRLEVLDSRVSAAGDTVKYLLGL----- 56
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+ETV + T+CVSSQVGC + C FC + +RNL + E+ QVL R
Sbjct: 57 DDGHAVETVLMRHDYGRTVCVSSQVGCRMACRFCASALGGWIRNLRSGELYEQVLAVRR- 115
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G ++++V+MGMGEPL N++N K ++ + GL S+RRI
Sbjct: 116 ----------------ASGEPVTHVVLMGMGEPLDNYENTLKFVANVTAPYGLRLSQRRI 159
Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
TLST G VP I ++ E + LAISLHA +N LR+ LVP+NRKYPLE LI AC Y
Sbjct: 160 TLSTCGLVPEIQKLARERLALTLAISLHAPNNALRDTLVPVNRKYPLEQLIPACAEYARR 219
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
+ RR++FEY++L G+NDSP A L +L G+ +NLIP NP P Y + + T
Sbjct: 220 T-GRRVSFEYILLGGVNDSPELARELSDLLTGLLGHVNLIPANPVPESGYRAPSPEAVRT 278
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
F ++ G +R G DI AACGQL+ R V
Sbjct: 279 FRRVLEEGGVPVSLRRELGADIGAACGQLRRRH-RTKAVEE 318
>gi|255584867|ref|XP_002533149.1| catalytic, putative [Ricinus communis]
gi|223527044|gb|EEF29230.1| catalytic, putative [Ricinus communis]
Length = 420
Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 116/369 (31%), Positives = 181/369 (49%), Gaps = 28/369 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+GM EL++ G R Q+ IY R +++ Q S + Q R+ L +
Sbjct: 58 LLGMSEPELQQLAADFG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPQAFRNELQEAG 113
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + I + DGT K L++ + V I R T C+SSQVGC L
Sbjct: 114 WRVGRSPIYRTVTAADGTVKLLIKLEDNRLIETVGIPIQDEKGPVRLTACISSQVGCPLR 173
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC TG RNL EI+ QVL + + +++N+V MGM
Sbjct: 174 CSFCATGKGGYSRNLKRHEIVEQVLAIEEIFKN-----------------RVTNVVFMGM 216
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
GEP+ N +V ++ + + +R IT+ST G I ++ ++ LA+SLHA
Sbjct: 217 GEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAP 274
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND A L ++L
Sbjct: 275 NQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYALLAGVNDRAEHAKELAELL 333
Query: 307 KGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ +NLIPFNP G +Y +K + F+ ++ + +R RG+D AACGQ
Sbjct: 334 HEWGRGSHVNLIPFNPIEGSDYQRPSKKAVQAFAAALESRKITVSVRQTRGMDASAACGQ 393
Query: 365 LKSLSKRIP 373
L++ ++ P
Sbjct: 394 LRNEFQKSP 402
>gi|313159155|gb|EFR58530.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
Length = 379
Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 186/360 (51%), Gaps = 29/360 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L G E+L ++G+P R Q+ +W+Y + + D MSDI+ R L + F
Sbjct: 43 LYGKTPEQLAAVCAELGMP----RFAAKQLARWLYAKHVEDPMRMSDIAAAHRAKLAERF 98
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ S DGT+K+L R IE+ YIP+ R TLCVSSQ GC + C
Sbjct: 99 RPAFTPPARITESADGTKKYLYRTQ-----QGAWIESAYIPDGERATLCVSSQAGCRMGC 153
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG Q L +LT EIL Q++ ++N+V MGMG
Sbjct: 154 KFCATGRQGLQHSLTTAEILNQIVSL-------------------PERDSLTNVVFMGMG 194
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EPL N DNV ++L I + G +S RITLST+G P + R + V LA+SLH +
Sbjct: 195 EPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVAPELQRFLDATKVHLAVSLHNPFH 254
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ R ++P+ R +P+ + R Y ++ RR++FEY+++ G+NDSPR L ++L G
Sbjct: 255 EERAAIMPVERAWPIAEVAAILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLDG 313
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
I +INLI F+ PG + D + ++ F + + G + IR RG DI AACG L +
Sbjct: 314 IKCRINLIRFHKIPGSPFFSPDDEAMIRFRDTLTAKGIQTTIRASRGEDIQAACGLLSTA 373
>gi|17227851|ref|NP_484399.1| hypothetical protein all0355 [Nostoc sp. PCC 7120]
gi|17129700|dbj|BAB72313.1| all0355 [Nostoc sp. PCC 7120]
Length = 322
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 122/352 (34%), Positives = 178/352 (50%), Gaps = 31/352 (8%)
Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80
+ + G P R Q+ WIY +G+R +S S++ R + I I +
Sbjct: 1 MQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV-PIGRSTIHHRSV 55
Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
+ DGT K+LL+ +E V IP R T+CVS+QVGC + C FC TG R
Sbjct: 56 ASDGTVKYLLQLS-----DGEIVEAVGIPTDKRLTVCVSTQVGCPMACDFCATGKGGYKR 110
Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
NL EI+ QVL + +++S++V MGMGEPL N +NV
Sbjct: 111 NLERHEIVDQVLTVQEDF-----------------QQRVSHVVFMGMGEPLLNTENVLAG 153
Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259
L + +G+ +R +TLST G I+ + E V LA+SLHA + LR L+P R
Sbjct: 154 LRSLNQDVGIG--QRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSAR 211
Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
Y +E L+ CR Y ++ RRI+FEY++L G+ND P AL L K L+G +NLIP+N
Sbjct: 212 SYHIEDLLAECREYVAIT-GRRISFEYILLAGVNDLPEHALELSKHLRGFQNHVNLIPYN 270
Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
+Y I F +++ + +R RGL+ AACGQL++ + R
Sbjct: 271 SIDEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTKASR 322
>gi|315655038|ref|ZP_07907942.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333]
gi|315490694|gb|EFU80315.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333]
Length = 390
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 121/374 (32%), Positives = 184/374 (49%), Gaps = 26/374 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++ EA++ G+ R Q+ + + R D M+D+ R
Sbjct: 36 QHFADFDSQQRREAVVAAGM----RPFRADQVARHYFGRFEADPAQMTDLGPADRERARD 91
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ +V + TRK L R ++E+V + R TLCVSSQVGC +
Sbjct: 92 LLPELITPVVTQVADKGWTRKTLWRL-----FDGAQVESVLMRYPKRVTLCVSSQVGCGM 146
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+A EIL QV LA D ++SN+V MG
Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQDGELGSPA----------RLSNLVFMG 196
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ ++ ++ + G S R + +ST G VP I ++ +E V LA+SL
Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LRN L+P+NR+Y ++ L+D Y + RR++ EY +++ +ND P A L
Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQAT-GRRVSIEYALIRDMNDHPWRAQLLA 315
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L A +N IP NP PG + S + + F E ++++G S+ +R RG DI
Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375
Query: 361 ACGQLKSLSKRIPK 374
ACGQL + +K+ P
Sbjct: 376 ACGQLAAKAKQSPA 389
>gi|224437065|ref|ZP_03658046.1| hypothetical protein HcinC1_03815 [Helicobacter cinaedi CCUG 18818]
gi|313143537|ref|ZP_07805730.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128568|gb|EFR46185.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 372
Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats.
Identities = 141/393 (35%), Positives = 210/393 (53%), Gaps = 33/393 (8%)
Query: 1 MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
M L+ K SL EL+ L R Q++ W+Y R + M +IS+
Sbjct: 1 MGILESKPSLYAYTLNELKSLLS--------PSFRAKQVYHWLYHRYENNIALMDNISKA 52
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEK 111
++ L HF I V + S DG++K+L + V I E+ I +
Sbjct: 53 MQEHLQSHFIISQITPVQIEKSSDGSKKYLFQTKDGHTFESVLIQMKSKELDESGEIVKG 112
Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
+ T+C+SSQ+GC + C+FC+T VRNL A EI+ QV++ + P
Sbjct: 113 EKWTMCLSSQIGCKVGCAFCFTAKGGFVRNLNAGEIVEQVVMMKRDSNIAPNKRV----- 167
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
NIV MGMGEPL N NV +++ I ++ GLS S RR T+STSG P I +
Sbjct: 168 ---------NIVYMGMGEPLHNLANVSQAIKILAELDGLSISARRQTISTSGIAPKIKEL 218
Query: 232 GE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
GE +GV LAISLHAVS++LR+ L+PIN+ Y + +++ R +P + + +R+ FEY+M+K
Sbjct: 219 GELNLGVQLAISLHAVSDELRSKLMPINKAYNIAEVLNEVRAFP-VDSRKRVMFEYLMIK 277
Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
G+ND + A L+ +L GI AK+NLI FNP G E+ +D+ F++ + + G I
Sbjct: 278 GVNDDIKAAKKLLALLNGIKAKVNLILFNPHEGSEFERPLMEDVRAFADFLVKKGLLCTI 337
Query: 351 RTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
R +G+DI AACGQL+ KR Q+ +
Sbjct: 338 RESKGIDISAACGQLREKIKRENGEITQKSKKA 370
>gi|317050952|ref|YP_004112068.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5]
gi|316946036|gb|ADU65512.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5]
Length = 342
Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 183/364 (50%), Gaps = 25/364 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ ++++ +G P + R Q W+Y +G D +++S+E+R LL +
Sbjct: 2 IDFCSLNYQQVQRLFADLGQP----KFRVDQFLAWVYAKGCLDMDAYTNVSKELRSLLRE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
I + S + +L +ETV IP S+ + C+S+QVGC +
Sbjct: 58 TIHFPRYTIESVQHSRVDNTRKILL----RFPDGHAVETVLIPVHSKLSQCLSTQVGCKM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC T + RNL+ EIL Q AR ++ ++ N V MG
Sbjct: 114 GCTFCATASMGFKRNLSVSEILAQAFAAREII---------------EPHERVGNFVFMG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N++N ++ + +S R +TLST G + I R+ E LAISLHA
Sbjct: 159 MGEPLDNYENSIAAIKTIIHPQMMGYSHRHVTLSTCGILKGIRRLSREELPCNLAISLHA 218
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
V+++ R+ L+P+NR L L+ R +P LS+ + IT EY++++ NDS DA L+++
Sbjct: 219 VNDEQRSFLMPVNRADGLHALMQTLREFP-LSSKKVITIEYLLIRDFNDSTDDAKKLLQL 277
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G+ K+NLI +NP +Y D+K ++ F + G + IR G DI AACGQL
Sbjct: 278 LRGLRCKVNLIVYNPHDYADYHAPDEKRVLQFQRILAEKGVMTFIRKSGGSDIDAACGQL 337
Query: 366 KSLS 369
S
Sbjct: 338 AGKS 341
>gi|256824969|ref|YP_003148929.1| ribosomal RNA large subunit methyltransferase N [Kytococcus
sedentarius DSM 20547]
gi|256688362|gb|ACV06164.1| radical SAM enzyme, Cfr family [Kytococcus sedentarius DSM 20547]
Length = 426
Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats.
Identities = 113/404 (27%), Positives = 176/404 (43%), Gaps = 50/404 (12%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L + ++A+ G P R +Q+ K + R + M+D+ + R + +
Sbjct: 29 QHLADLDPAGRKQAVTDAGWPA----FRANQLSKHYFERYTDEPAAMTDLPKAGREEMVR 84
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
V + D T K L R +E+V + +R TLC+SSQ GC
Sbjct: 85 GLMPQLLTPVSVMRADDGATVKTLWRLH-----DGALVESVLMRYPNRVTLCLSSQAGCG 139
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--------- 176
+ C FC TG Q L RNL+ EI+ Q++ A +L D +
Sbjct: 140 MNCPFCATGQQGLTRNLSTAEIVGQLVAANRMLNDPEAPGLAPPPALAEGQVELGENDAD 199
Query: 177 ------------------------RKISNIVMMGMGEPLCNFDNVKKSLSIASDSM--GL 210
++ N+V MGMGE L N+ ++ D GL
Sbjct: 200 PSLDAGADEVEDASLDTPLAAGGPHRVHNVVFMGMGEALANYRKAVDAVRRMVDPAPAGL 259
Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
S R IT+ST G VP I + E + LA+SLHA ++LR+ LVPIN+++ ++ +DA
Sbjct: 260 GMSARGITMSTVGLVPAIDKFAAEGVAATLALSLHAPDDELRDELVPINKRWKVDEALDA 319
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPGCEY 326
Y + RR++ EY +++ +ND A L + L +N IP NP PG ++
Sbjct: 320 AYRYFE-TTGRRVSIEYALIRDMNDQAWRADLLAEKLNARGRGWVHVNPIPLNPTPGSKW 378
Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
S F E ++ G + +R RG DI ACGQL + +
Sbjct: 379 TASRPGVEQQFVERLRAGGIPTTVRDTRGSDIDGACGQLAAAPE 422
>gi|313891997|ref|ZP_07825598.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII
345-E]
gi|313119640|gb|EFR42831.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII
345-E]
Length = 344
Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 29/368 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+ G +ELEE + P + R QI ++Y R I F M + + +R L ++
Sbjct: 4 DIWGKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKEN 59
Query: 68 FSIIYPEIV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
SI PE++ + + T K L + ETV + K ++CVS+Q+GC++
Sbjct: 60 ASIYIPEVINSIQSNDGNTTKILFKLK-----DGSLAETVCMHHKYGNSICVSTQIGCAM 114
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + L RNLT E+L QV + L + +IV+MG
Sbjct: 115 GCIFCASTRNGLERNLTFGEMLSQVYAFKKL-----------------KNISVHSIVLMG 157
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEPL N++N K + + +DS L+ S R ITLST G VP I R+ +E + LAISLHA
Sbjct: 158 AGEPLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHA 217
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +RN ++P ++ + +E +I A +HY + RRITFEY+++KGIN +P A+ L K+
Sbjct: 218 PNDKIRNEILPSSKHFKIEDVIRASKHYFENT-GRRITFEYILIKGINAAPEHAVELAKL 276
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ + INLIP N + +K+I F + +++ G S+ +R G +I AACGQL
Sbjct: 277 VGNLNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQL 336
Query: 366 KSLSKRIP 373
K
Sbjct: 337 KRRYLENR 344
>gi|258652388|ref|YP_003201544.1| ribosomal RNA large subunit methyltransferase N [Nakamurella
multipartita DSM 44233]
gi|258555613|gb|ACV78555.1| radical SAM enzyme, Cfr family [Nakamurella multipartita DSM 44233]
Length = 372
Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats.
Identities = 121/373 (32%), Positives = 180/373 (48%), Gaps = 25/373 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + +E A+ G P+ R Q+ + RD M+D+ R +
Sbjct: 19 THFVDLSPDERRAAVRAAGAPE----FRAKQLAHHYFAGLTRDAAEMTDLPAAGR---AE 71
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ PE++ E S + R IE+V + R TLCVSSQ GC +
Sbjct: 72 FVDALLPELLTEVRSLACDDGSTRKTLWRAH-DGTLIESVLMRYPDRITLCVSSQAGCGM 130
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV LA + D E ++SN+V MG
Sbjct: 131 ACPFCATGQGGLQRNLSTGEIVEQVRLAARMARDGALGEPG----------RLSNVVFMG 180
Query: 187 MGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N++ V +++ A GL S R +T+ST G VP I R+ EE V LA+SL
Sbjct: 181 MGEPLANYNRVLEAVRAITAPAPSGLGISARSVTVSTVGLVPAIRRLTEEKLQVRLAVSL 240
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ + ++ A R Y + RR++ EY +++ IND P A L
Sbjct: 241 HTPDDELRDTLVPVNERWKVAEVLAAAREYAD-TTGRRVSIEYALIRDINDQPWRADLLG 299
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+L+ +NLIP NP PG ++ S + F ++ G + +R RG +I A
Sbjct: 300 SLLREHLGPLVHVNLIPLNPTPGSQWDASPRPVQDEFVRRVRAQGVACTVRDTRGQEIAA 359
Query: 361 ACGQLKSLSKRIP 373
ACGQL + R
Sbjct: 360 ACGQLAAEGVRSN 372
>gi|15842421|ref|NP_337458.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis CDC1551]
gi|31794056|ref|NP_856549.1| hypothetical protein Mb2904c [Mycobacterium bovis AF2122/97]
gi|121638761|ref|YP_978985.1| hypothetical protein BCG_2901c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148824069|ref|YP_001288823.1| hypothetical protein TBFG_12894 [Mycobacterium tuberculosis F11]
gi|215404854|ref|ZP_03417035.1| hypothetical protein Mtub0_14428 [Mycobacterium tuberculosis
02_1987]
gi|215412721|ref|ZP_03421433.1| hypothetical protein Mtub9_15195 [Mycobacterium tuberculosis
94_M4241A]
gi|215447142|ref|ZP_03433894.1| hypothetical protein MtubT_14832 [Mycobacterium tuberculosis T85]
gi|218754632|ref|ZP_03533428.1| hypothetical protein MtubG1_14859 [Mycobacterium tuberculosis GM
1503]
gi|224991253|ref|YP_002645942.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798032|ref|YP_003031033.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis KZN 1435]
gi|254232975|ref|ZP_04926302.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254365521|ref|ZP_04981566.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551949|ref|ZP_05142396.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260187898|ref|ZP_05765372.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis CPHL_A]
gi|260206195|ref|ZP_05773686.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis K85]
gi|289448546|ref|ZP_06438290.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A]
gi|289553331|ref|ZP_06442541.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289575585|ref|ZP_06455812.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85]
gi|289746679|ref|ZP_06506057.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis 02_1987]
gi|289763057|ref|ZP_06522435.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294994027|ref|ZP_06799718.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis 210]
gi|297635496|ref|ZP_06953276.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis KZN 4207]
gi|297732495|ref|ZP_06961613.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis KZN R506]
gi|298526349|ref|ZP_07013758.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306781073|ref|ZP_07419410.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis
SUMu002]
gi|306785712|ref|ZP_07424034.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis
SUMu003]
gi|306789752|ref|ZP_07428074.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis
SUMu004]
gi|306794566|ref|ZP_07432868.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis
SUMu005]
gi|306798807|ref|ZP_07437109.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis
SUMu006]
gi|306804654|ref|ZP_07441322.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis
SUMu008]
gi|306808847|ref|ZP_07445515.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis
SUMu007]
gi|306968947|ref|ZP_07481608.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis
SUMu009]
gi|313659828|ref|ZP_07816708.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis KZN V2475]
gi|61250932|sp|P0A644|RLMN_MYCTU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|61250933|sp|P0A645|RLMN_MYCBO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829812|sp|A1KMM4|RLMN_MYCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829852|sp|A5U6N5|RLMN_MYCTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|254807189|sp|C1AFZ5|RLMN_MYCBT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|13882723|gb|AAK47272.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31619651|emb|CAD96591.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494409|emb|CAL72890.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124602034|gb|EAY61044.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134151034|gb|EBA43079.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148722596|gb|ABR07221.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224774368|dbj|BAH27174.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319535|gb|ACT24138.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis KZN 1435]
gi|289421504|gb|EFD18705.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A]
gi|289437963|gb|EFD20456.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289540016|gb|EFD44594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85]
gi|289687207|gb|EFD54695.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis 02_1987]
gi|289710563|gb|EFD74579.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|298496143|gb|EFI31437.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308326123|gb|EFP14974.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis
SUMu002]
gi|308329626|gb|EFP18477.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis
SUMu003]
gi|308333765|gb|EFP22616.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis
SUMu004]
gi|308337159|gb|EFP26010.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis
SUMu005]
gi|308340969|gb|EFP29820.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis
SUMu006]
gi|308344802|gb|EFP33653.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis
SUMu007]
gi|308348750|gb|EFP37601.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis
SUMu008]
gi|308353451|gb|EFP42302.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis
SUMu009]
gi|323718490|gb|EGB27661.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis CDC1551A]
gi|326904495|gb|EGE51428.1| radical SAM protein [Mycobacterium tuberculosis W-148]
gi|328457806|gb|AEB03229.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 364
Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats.
Identities = 116/367 (31%), Positives = 175/367 (47%), Gaps = 28/367 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + A+ ++G+P R Q+ Y R I D + M+D+ VR +
Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ G + L E+V + R T+C+SSQ GC +
Sbjct: 73 AMFPNLLTASADITCDAGQTRKTL----WRAVDGTMFESVLMRYPRRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SL
Sbjct: 176 MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 236 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVT-GRRVSIEYALIRDVNDQPWRADLLG 294
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L + A +NLIP NP PG ++ S + F + ++ G S +R RG +I A
Sbjct: 295 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 354
Query: 361 ACGQLKS 367
ACGQL +
Sbjct: 355 ACGQLAA 361
>gi|215428321|ref|ZP_03426240.1| hypothetical protein MtubT9_18783 [Mycobacterium tuberculosis T92]
gi|215431827|ref|ZP_03429746.1| hypothetical protein MtubE_14401 [Mycobacterium tuberculosis
EAS054]
gi|260202014|ref|ZP_05769505.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
tuberculosis T46]
gi|289444435|ref|ZP_06434179.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46]
gi|289751545|ref|ZP_06510923.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289417354|gb|EFD14594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46]
gi|289692132|gb|EFD59561.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length = 364
Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats.
Identities = 116/367 (31%), Positives = 175/367 (47%), Gaps = 28/367 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + A+ ++G+P R Q+ Y R I D + M+D+ VR +
Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ G + L E+V + R T+C+SSQ GC +
Sbjct: 73 AMFPNLLTASADITCDAGQTRKTL----WRAVDGTMFESVLMRYSRRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SL
Sbjct: 176 MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 236 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVT-GRRVSIEYALIRDVNDQPWRADLLG 294
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L + A +NLIP NP PG ++ S + F + ++ G S +R RG +I A
Sbjct: 295 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 354
Query: 361 ACGQLKS 367
ACGQL +
Sbjct: 355 ACGQLAA 361
>gi|237785746|ref|YP_002906451.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758658|gb|ACR17908.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
44385]
Length = 394
Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats.
Identities = 112/370 (30%), Positives = 182/370 (49%), Gaps = 24/370 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ +E ++A+ +G+P R +Q+ + Y R + M+D+ R + +
Sbjct: 41 THFADLTVDEQKQAVKDLGLPA----FRANQLARHYYGRFEASPETMTDLPAAAREPVQK 96
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++PE++ E + + + + +E+V + R TLC+SSQ GC +
Sbjct: 97 A---LFPELMTEVRNISCDQGMTRKTLWKLH-DGTLLESVLMRYPGRATLCISSQAGCGM 152
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EI+ QV A + + ++SN+V MG
Sbjct: 153 ACPFCATGQGGLHRNLSTGEIVDQVRAAAAAMSRGDVAGGKG---------RLSNVVFMG 203
Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGEPL N+ V ++ +D G S+R +T+S+ G P I R +E V LA+SL
Sbjct: 204 MGEPLANYKRVVSAVRQITDPSPRGFGLSQRNVTVSSVGLAPAIRRFADEGLSVTLAVSL 263
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H ++LR+ LVP+N ++ +E ++DA +Y S RR++ EY +++ +ND A L
Sbjct: 264 HTPDDELRDSLVPVNNRWSVEEVLDAAAYYADRS-GRRVSIEYALIRDVNDQGWRADLLG 322
Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K LK +N+IP NP PG + S ++ F +K G +R RG +I A
Sbjct: 323 KKLKKALHSKVHVNVIPLNPTPGSIWDASTKQQQEEFVRRVKTQGVECTVRDTRGQEIAA 382
Query: 361 ACGQLKSLSK 370
ACGQL + K
Sbjct: 383 ACGQLAAEEK 392
>gi|295698544|ref|YP_003603199.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola
USDA]
gi|291157215|gb|ADD79660.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola
USDA]
Length = 356
Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats.
Identities = 143/364 (39%), Positives = 207/364 (56%), Gaps = 13/364 (3%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K +L+ ++ + IG R Q+ WIY +FQ M++ S+++R
Sbjct: 1 MSNKLNLLQYDILKVRKIFKDIG----ENTFRADQLTDWIYRHYCDNFQSMTNFSRDLRK 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F I+ P I ++KIS DGT KW +R IETV+IPE R TLC+SSQ+
Sbjct: 57 KMESFFQILPPRIQEKKISLDGTIKWRMRT-----DSEETIETVFIPEGRRKTLCISSQI 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC L C FC+ +K RNL EI+ QV +A +L + +NI
Sbjct: 112 GCPLKCRFCFVSKKKFRRNLKISEIVGQVWIAGKILRKEISSVFSKKRNHLL---PFTNI 168
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V+MG GEPL NF N+ S+ I + S G +F +++I LST+G P I ++ E + LAIS
Sbjct: 169 VIMGTGEPLLNFRNILSSIRIITSSHGFNFPEKKIVLSTAGVSPAIEKLLENTQIKLAIS 228
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALN 301
LHA +N +R+ ++PIN+KY ++ ++D+ + + SN +RIT EY+ML+GIND +DA
Sbjct: 229 LHAPNNKIRDRIMPINKKYDIQSILDSIQKFQNHSNIFQRITIEYIMLRGINDEVQDAYQ 288
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ILK IP KINLIPFN G Y S+ I FSE +K+ + + +R +G DI A+
Sbjct: 289 LADILKNIPVKINLIPFNSTAGIPYKRSNLLHIQQFSEILKKFRFVTTVRKTKGGDIQAS 348
Query: 362 CGQL 365
CGQL
Sbjct: 349 CGQL 352
>gi|168059243|ref|XP_001781613.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666927|gb|EDQ53569.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 390
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 194/369 (52%), Gaps = 28/369 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
LIG +EELE+ +L +G + R Q+++ IY I+ + ++ + +++R+ + +
Sbjct: 35 LIGKTQEELEDIVLSLG----EQKYRGKQMYQLIYKNKIKTVKELAQLPKQLRNAMTEAG 90
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+SI I S DGT K LL+ + V I R T+CVSSQVGC+L
Sbjct: 91 WSIGRSPIHHVSTSKDGTVKILLKLEDNRLVEAVGIPVKDKEGNQRLTVCVSSQVGCALR 150
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC TG RNL A EI+ QVL L +++NIV MGM
Sbjct: 151 CAFCATGKGGFARNLKAHEIVDQVLSIEDLFRQ-----------------RVTNIVFMGM 193
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
GEPL N DNV + + L +R +T+ST G I R+ ++ LAISLHA
Sbjct: 194 GEPLMNLDNVLDAHRTINKE--LQIGQRMMTISTVGVPNTIRRLATHKLQSTLAISLHAP 251
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ +LR+ +VP + YPL+ L++ C++Y + RR++FEY +L G+ND A L +L
Sbjct: 252 NQELRSRIVPSAKGYPLDALMEDCKYYFE-TTGRRLSFEYTLLAGVNDQREHAEELATLL 310
Query: 307 KGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+N+IP+NP E+ + ++ F E + + ++ +R RGLD AACGQ
Sbjct: 311 HQWNLGRHVNIIPYNPIADSEFERPTKAKVLAFVETLSKRRVTASVRVTRGLDANAACGQ 370
Query: 365 LKSLSKRIP 373
L++ ++IP
Sbjct: 371 LRNEFQKIP 379
>gi|303232118|ref|ZP_07318821.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
ACS-049-V-Sch6]
gi|302513224|gb|EFL55263.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
ACS-049-V-Sch6]
Length = 348
Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 188/372 (50%), Gaps = 30/372 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EL+ + + + R Q+ +IY R I FQ M+ + +R L+ +
Sbjct: 4 LLGKSLVELQALFEEH----KIQKFRAKQLIDYIYHRHIFVFQDMTQFPKNLRDWLDSNC 59
Query: 69 SIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I P+++ + +S T+K LL IE V + + ++CVSSQVGC++
Sbjct: 60 IISIPKVITQSVSPDGKTQKLLLELTDHSR-----IEAVLMEQYYGNSVCVSSQVGCAMG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC + L R+L+ EI+ QV+L +L I ++V+MG
Sbjct: 115 CVFCASTQGGLFRDLSVSEIVGQVVLFSAL-----------------KQEDIHSLVVMGA 157
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL N+DNV ++L + D M S R++T+ST G+VPNI ++ +E + LA+SLHA
Sbjct: 158 GEPLQNYDNVLQALKLIHDPMTFDISYRKMTISTCGWVPNIYKLADEDLPITLALSLHAT 217
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++ R ++P+ +Y L+ ++DA ++Y + RITFEY+++ IN S +A L I
Sbjct: 218 TDETRRKIMPVGSRYKLDEVLDAVKYYYEKTQR-RITFEYILIDSINVSLEEAHELGNIG 276
Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
K P +NLIP N K + F + + G S IR G I AACGQL
Sbjct: 277 KAFPNCHVNLIPVNGNEHINLYKPSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQL 336
Query: 366 KSLSKRIPKVPR 377
K R ++
Sbjct: 337 KVAHGRKEEIHE 348
>gi|218461404|ref|ZP_03501495.1| hypothetical protein RetlK5_18727 [Rhizobium etli Kim 5]
Length = 278
Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 194/272 (71%), Positives = 224/272 (82%), Gaps = 3/272 (1%)
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
TLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+
Sbjct: 1 TLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPA 60
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEE
Sbjct: 61 EGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEE 120
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
IGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +ND
Sbjct: 121 IGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVND 180
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
S DA LIK+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPR
Sbjct: 181 SLEDARGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPR 240
Query: 355 GLDILAACGQLKSLSKRIPKVPR---QEMQIT 383
G DILAACGQLKS S+R+ K R + M I
Sbjct: 241 GRDILAACGQLKSESERMRKTERLAFEAMMIA 272
>gi|229916075|ref|YP_002884721.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
gi|229467504|gb|ACQ69276.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
Length = 353
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 122/372 (32%), Positives = 206/372 (55%), Gaps = 27/372 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ G+ ++L + G Q+W +Y+ ++ + ++ EVR L
Sbjct: 2 KSSIYGLTFDQLTNECTEAGYGA----FHARQVWDSLYIDRVKSMDDL-NVRDEVRDYLT 56
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + I E+ ++ + DGT K+LL+ IETV + K ++CV++QVGC+
Sbjct: 57 EKYVISTQELFVKQEAGDGTVKFLLKLH-----DGHYIETVLMRHKYGRSVCVTTQVGCN 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC +G K R+LTA E++ Q++ + L + G ++S+IV+M
Sbjct: 112 IGCSFCASGLLKKTRDLTAGEVVEQIMTVQHFLDE------------EGEGDRVSHIVVM 159
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
G+GEP NFDN+ L + D GL+ + R+I +STSG I + + ++ + LA+SLH
Sbjct: 160 GIGEPFDNFDNLVDFLLVVKDERGLAIAPRKINVSTSGLADKIYKFADLDLRINLALSLH 219
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LR ++ INR +PL+ L+ + R+Y +N RITFEY++L +ND P A L
Sbjct: 220 APNDELRTRIMKINRAFPLDKLMPSIRYYVEKTNK-RITFEYILLSKVNDLPEHAEELAD 278
Query: 305 ILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+++ I + +NLIP+NP +Y S +DI+ F + +K+ G ++ +R G DI AA
Sbjct: 279 LIEDIKDKSYVNLIPYNPVNEHIQYERSTPEDIMAFYDILKKRGVNTGVRLEHGTDIDAA 338
Query: 362 CGQLKSLSKRIP 373
CGQL+S +
Sbjct: 339 CGQLRSKHMNVE 350
>gi|329120993|ref|ZP_08249624.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965]
gi|327471155|gb|EGF16609.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965]
Length = 344
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 193/368 (52%), Gaps = 29/368 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+ G +ELEE + P + R QI ++Y R I F M + + +R L ++
Sbjct: 4 DIWGKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKEN 59
Query: 68 FSIIYPEIV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
SI PE++ + + T K L + ETV + K ++CVS+Q+GC++
Sbjct: 60 ASIYIPEVINSIQSNDGNTTKILFKLK-----DGSLAETVCMHHKYGNSICVSTQIGCAM 114
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC + L RNLT E+L QV + L + +IV+MG
Sbjct: 115 GCIFCASTRNGLERNLTFGEMLSQVYAFKKL-----------------KNISVHSIVLMG 157
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
GEPL N++N K + + +DS L+ S R ITLST G VP I R+ +E + LAISLHA
Sbjct: 158 AGEPLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHA 217
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ +RN ++P ++ + +E +I A +HY + RRITFEY+++KGIN +P+ A+ L K+
Sbjct: 218 PNDKIRNEILPSSKHFKIEDVIRASKHYFENT-GRRITFEYILIKGINAAPKHAVELAKL 276
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ + INLIP N + +K+I F + +++ G S+ +R G +I AACGQL
Sbjct: 277 IGNLNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQL 336
Query: 366 KSLSKRIP 373
K
Sbjct: 337 KRRYLENR 344
>gi|291514720|emb|CBK63930.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes shahii WAL 8301]
Length = 342
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 133/368 (36%), Positives = 190/368 (51%), Gaps = 29/368 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ESL G ++L ++G+P R QI +W+YVR D M+DI+ R
Sbjct: 1 MTHQESLYGKTPDQLAALCGELGMP----RFAARQIARWLYVRHTEDPLRMTDIAAAHRQ 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + FS S DGT+K+L R +E+ YIP+ R TLCVSSQ
Sbjct: 57 RLAEWFSPALSAPERVTESADGTKKYLFRTL-----EGHYVESAYIPDGERATLCVSSQA 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG Q L ++LTA EIL Q + K++N+
Sbjct: 112 GCRMGCRFCATGRQGLQQSLTAAEILNQAVSL-------------------PERDKLTNL 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEPL N D V ++L I + G +S RITLST+G VP + R + V LA+S
Sbjct: 153 VFMGMGEPLDNTDEVLRALEIITAEWGFGWSPTRITLSTAGVVPELRRFLDATKVHLAVS 212
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++ R ++P+ R +P+ + R Y ++ RR++FEY+++ G+NDSPR L
Sbjct: 213 LHNPFHEERMEIMPVERAWPIAEVAAILREY-DFTHQRRVSFEYIVMSGLNDSPRHIREL 271
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++L GI +INLI F+ P Y + +V F + + G + IR RG DI AAC
Sbjct: 272 TRLLNGIKCRINLIRFHRIPDSPYFSPGDEAMVRFRDALTARGIQTTIRASRGEDIQAAC 331
Query: 363 GQLKSLSK 370
G L + K
Sbjct: 332 GLLSTRLK 339
>gi|269792997|ref|YP_003317901.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100632|gb|ACZ19619.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 462
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 121/367 (32%), Positives = 180/367 (49%), Gaps = 29/367 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K + + E+ + +G R R Q+ W Y R + +FQ MSD+S E+R+
Sbjct: 1 MSKMDALSLSYEDWVREMEALG----EKRFRADQVCGWFYRRHVFEFQLMSDLSLELRNR 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ F + P+++ + S K L +E+V I R T CVS+QVG
Sbjct: 57 LDGAFRVGLPKMLGMRASGRDGTKKFLF-----DFDGSSVESVAIWHPGRITACVSTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C L C FC TG RN+T E++ Q L + LG+ I N+V
Sbjct: 112 CPLGCPFCATGQSGFERNMTVGEMVGQFLAMEARLGE------------------IKNLV 153
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEP+ N+ N+ ++ + R IT+STSG +P I + E GV LA+S
Sbjct: 154 FMGMGEPMLNYHNLIGAIRNLNHPKMRGLGIRHITVSTSGIIPGILNLAREGLGVRLAVS 213
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++LR+ LVPIN +YPL+ L A Y ++ RIT EY + +NDS A L
Sbjct: 214 LHAPNDELRDQLVPINAQYPLKELKRALMEYQEIT-GDRITIEYSLFDQVNDSVPMARQL 272
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ LKG+ A +NLIP + + S + F + + GY +R +G D+ AC
Sbjct: 273 GEYLKGLSAFVNLIPGSCVGDQRFRPSPPFRVRAFGDLLTAMGYPVAMRQSKGSDVGGAC 332
Query: 363 GQLKSLS 369
GQL+
Sbjct: 333 GQLRRQV 339
>gi|225424671|ref|XP_002262749.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|296086557|emb|CBI32146.3| unnamed protein product [Vitis vinifera]
Length = 439
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 134/364 (36%), Positives = 195/364 (53%), Gaps = 26/364 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRH 62
K L GM EL+ + G M +WK +Y + ++++ +
Sbjct: 77 SKVLLKGMRYFELQNWVQSHGYRPGQALM----LWKRLYGNNIWAHCIDELEGLNKDFKS 132
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
+L++H + D + DGTRK L + IETV IP ++ R T+CVSSQ
Sbjct: 133 MLSEHAEFKALTLKDSIKASDGTRKILFTL-----DDGLVIETVIIPCDRGRNTVCVSSQ 187
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC++ C FCYTG L R+LTA EI+ Q + AR L G I+N
Sbjct: 188 VGCAMNCQFCYTGRMGLTRHLTAAEIVEQAVYARRLFSSEVGS--------------ITN 233
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+V MGMGEP N ++V K+ I GL FS R++T+STSG VP + E LA+
Sbjct: 234 VVFMGMGEPFHNIESVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKHFLRESNCALAV 293
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL+A ++++RN ++PINRKY L +L+ R + ++ FEYVML G+NDS DA
Sbjct: 294 SLNATTDEVRNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARR 353
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
LI +++GIP K+NLI FNP G ++ + ++ I+ F + +G +R RG D +AA
Sbjct: 354 LIDLVQGIPCKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAA 413
Query: 362 CGQL 365
CGQL
Sbjct: 414 CGQL 417
>gi|219118833|ref|XP_002180183.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408440|gb|EEC48374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 378
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 121/375 (32%), Positives = 193/375 (51%), Gaps = 26/375 (6%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L + + ELE ++ G P + R Q++ WI +G+ D M+++ + +R L++
Sbjct: 16 NLSTVTQAELEILMVAWGHP----KYRAQQVYNWIRQQGVTDVALMTNLPKTLRAQLSEF 71
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSL 126
EI E +S DGT K R IE+V +P K R T C+SSQ GC+
Sbjct: 72 SKPRSLEIAAEMVSKDGTIKRAYR-----CADGQMIESVLMPYKDGRYTACISSQAGCAQ 126
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR----KISNI 182
C FC TG R LTA+EI QV + + L + + ++SN+
Sbjct: 127 GCVFCATGQMGFARQLTADEIFEQVAIFANELQQQKDQQQYIDAGGQEIQHGRATRLSNV 186
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA-- 240
V MGMGEPL N+ NV K+++ ++ +G+ R+IT+ST G VPNI ++ + +
Sbjct: 187 VFMGMGEPLANYRNVVKAVNRITNDLGIG--ARKITVSTVGIVPNIVKLTTDPDMPPIRL 244
Query: 241 -ISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+SLH S+ R+ L+P NR+Y L+ L+ A R Y + RRIT E+ +++G ND+
Sbjct: 245 AVSLHCASDKERSDLLPANRRYGGLDELMPALRDYIE-TTGRRITLEWALIQGENDNADS 303
Query: 299 ALNLIKIL-----KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
A L ++ + +N+IP NP G E + ++++ F + ++ G + R
Sbjct: 304 ARTLASLVQRYGLRRDMVHVNVIPLNPTGGFEGTPTQRQNVNVFVKTLEEHGIACTPRVR 363
Query: 354 RGLDILAACGQLKSL 368
RG+DI A CGQL S
Sbjct: 364 RGIDIDAGCGQLTSK 378
>gi|303233967|ref|ZP_07320616.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4]
gi|302494892|gb|EFL54649.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4]
Length = 349
Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 182/365 (49%), Gaps = 27/365 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K L M +EL+E + G R Q ++ I+ I + M++ S +R
Sbjct: 1 MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPNEMTNFSNSLRE 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LNQ+ I I+ S K L + +ETV++ K+ ++C+S+Q+
Sbjct: 57 KLNQYNDIKNCSIIKRIDSKLDNTKKYLI----EMSDGNIVETVFMQYKTHTSICLSTQI 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + + VRNL E+ Q+ L + L +I+NI
Sbjct: 113 GCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVENDLDI-----------------RINNI 155
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEPL N+DNV + + + +D G S R ITLST G V I R+ + G+ + I
Sbjct: 156 VLMGIGEPLDNYDNVIRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINITI 215
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH ++ RN L+PI KY +E ++DAC +Y + RI FEY +++ +NDS +
Sbjct: 216 SLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMDK 274
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+ +LK +NLI NP D+ + F E + ++ ++ IR +G+DI A
Sbjct: 275 LVSLLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDGA 334
Query: 362 CGQLK 366
CGQL+
Sbjct: 335 CGQLR 339
>gi|303228552|ref|ZP_07315380.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
ACS-134-V-Col7a]
gi|302516799|gb|EFL58713.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
ACS-134-V-Col7a]
Length = 348
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 189/372 (50%), Gaps = 30/372 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L+G EL+ + + + R Q+ +IY R I FQ M+ + +R L+ +
Sbjct: 4 LLGKSLVELQALFEEH----KVQKFRAKQLIDYIYHRHIFVFQDMTQFPKTLRDWLDSNC 59
Query: 69 SIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ P+++ + +S + T+K LL IE V + + ++CVSSQVGC++
Sbjct: 60 IVSIPKVITQSVSPDEKTQKLLLELADHSR-----IEAVLMEQHYGNSVCVSSQVGCAMG 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC + L R+L+ EI+ QV+L +L I ++V+MG
Sbjct: 115 CVFCASTQGGLFRDLSVSEIVGQVVLFSAL-----------------KQEDIHSLVVMGA 157
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL N+DNV ++L + D M S R++T+ST G+VPNI ++ +E + LA+SLHA
Sbjct: 158 GEPLQNYDNVLQALKLIHDPMTFDISYRKMTISTCGWVPNIYKLADEDLPITLALSLHAT 217
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++ R ++P+ +Y L+ ++DA ++Y + RITFEY+++ IN S +A L I
Sbjct: 218 TDETRRKIMPVGSRYKLDEVLDAVKYYYEKTQR-RITFEYILIDSINVSLEEAHELGNIG 276
Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
K P +NLIP N K + F + + G S IR G I AACGQL
Sbjct: 277 KAFPNCHVNLIPVNGNEHINLYKPSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQL 336
Query: 366 KSLSKRIPKVPR 377
K R ++
Sbjct: 337 KVAHGRKEEIHE 348
>gi|169824362|ref|YP_001691973.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328]
gi|205829759|sp|B0S143|RLMN_FINM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|167831167|dbj|BAG08083.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328]
Length = 349
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 182/365 (49%), Gaps = 27/365 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K L M +EL+E + G R Q ++ I+ I + M++ S +R
Sbjct: 1 MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDEMTNFSNSLRG 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LNQ+ I I+ S K L + +ETV++ K+ ++C+S+Q+
Sbjct: 57 KLNQYNDIKNCSIIKRIDSKLDNTKKYLI----EMSDGNIVETVFMQYKTHTSICLSTQI 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + + VRNL E+ Q+ L + L +I+NI
Sbjct: 113 GCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVENDLDI-----------------RINNI 155
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEPL N+DNV + + + +D G S R ITLST G V I R+ + G+ + I
Sbjct: 156 VLMGIGEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINITI 215
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH ++ RN L+PI KY +E ++DAC +Y + RI FEY +++ +NDS +
Sbjct: 216 SLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMDK 274
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+ +LK +NLI NP D+ + F E + ++ ++ IR +G+DI A
Sbjct: 275 LVSLLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDGA 334
Query: 362 CGQLK 366
CGQL+
Sbjct: 335 CGQLR 339
>gi|224098427|ref|XP_002311170.1| predicted protein [Populus trichocarpa]
gi|222850990|gb|EEE88537.1| predicted protein [Populus trichocarpa]
Length = 441
Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats.
Identities = 119/375 (31%), Positives = 180/375 (48%), Gaps = 17/375 (4%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+GM EL++ +G R Q+ IY R +++ Q S + R+ L +
Sbjct: 55 LLGMSEPELQQLATDLG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPLVFRNDLQEAG 110
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + I + DGT K L+R + V I R T CVSSQVGC L
Sbjct: 111 WKVGRSPIFQTVTAADGTVKLLIRLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLR 170
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG------MVIPSVGRKISN 181
CSFC TG RNL EI+ Q L S + V +++N
Sbjct: 171 CSFCATGKGGFSRNLQRHEIVEQHRLGSSGTTSTCSKLYLHVLYAQVLAVEEIFKHRVTN 230
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
+V MGMGEP+ N +V ++ + + +R IT+ST G I ++ ++ LA
Sbjct: 231 VVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASHKLQSTLA 288
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA + LR +VP + YPL+ ++ C+ Y L +RR++FEY +L G+ND A
Sbjct: 289 LSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEYF-LETSRRVSFEYALLAGVNDRVEHAK 347
Query: 301 NLIKILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L ++L +NLIPFNP G +Y +K I F+ ++ + +R RGLD
Sbjct: 348 ELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTVSVRQTRGLDA 407
Query: 359 LAACGQLKSLSKRIP 373
AACGQL++ ++ P
Sbjct: 408 SAACGQLRNEFQKSP 422
>gi|194476577|ref|YP_002048756.1| hypothetical protein PCC_0094 [Paulinella chromatophora]
gi|171191584|gb|ACB42546.1| hypothetical protein PCC_0094 [Paulinella chromatophora]
Length = 350
Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats.
Identities = 126/375 (33%), Positives = 184/375 (49%), Gaps = 36/375 (9%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N L + L+GM + LE + G R QI +W+Y++G RD + ++ + + R
Sbjct: 4 NALDRIPLLGMGQLALETWAVAHG----QAAFRGRQIHEWMYLKGERDIESITVLPKSWR 59
Query: 62 HLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L + + + +IS DGT K + IETV IP R T+CVSS
Sbjct: 60 EQLIMANIQLGRSRELQRQISSDGTIK----LLLQSTSDSETIETVGIPTAQRLTVCVSS 115
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC + C FC TG L R+L EIL QVL R ++ R+ +
Sbjct: 116 QAGCPMACQFCATGKGGLQRSLLTHEILDQVLSIRRVMD-----------------RRPT 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-------E 233
+IV MGMGEPL N + V +S+ +D G S+RRIT+ST G + + +
Sbjct: 159 HIVFMGMGEPLLNIEAVLESIQSLNDDFG--ISQRRITISTVGVPRTLPLLAELALKRLD 216
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
LA+SLHA + LR L+P Y L+ +++ CRHY ++ RR++FEY++L G+N
Sbjct: 217 RAQFTLAVSLHAPNQSLREKLIPSATAYSLDNILEDCRHYLAIT-GRRVSFEYILLGGVN 275
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L + G + +NLI +NP + + I F +K G S +R
Sbjct: 276 DQTFHAEELADRVSGFQSHVNLIAYNPIDDEVFKRPNIFRIERFLSILKHRGLSVSLRAS 335
Query: 354 RGLDILAACGQLKSL 368
RGLD AACGQL+
Sbjct: 336 RGLDKNAACGQLRRR 350
>gi|255016116|ref|ZP_05288242.1| hypothetical protein B2_19608 [Bacteroides sp. 2_1_7]
gi|256842536|ref|ZP_05548038.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
sp. D13]
gi|256735892|gb|EEU49224.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
sp. D13]
Length = 334
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 128/358 (35%), Positives = 177/358 (49%), Gaps = 29/358 (8%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M EEL+ ++G+P Q+ WIY + I M++I+ R LL F I
Sbjct: 1 MTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
+ + S DGT K+L G +E+VYIP R TLCVSSQVGC + C FC
Sbjct: 57 AYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQVGCKMNCLFC 111
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
TG Q NLTA +IL Q+ ++NIV MGMGEPL
Sbjct: 112 MTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNIVFMGMGEPL 152
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
N D + K L I + G ++S +RIT+ST G + R EE LA+SLH+ R
Sbjct: 153 DNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPMER 212
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L +L GIP
Sbjct: 213 LSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGIPC 271
Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
++NLI F+ P SD + F + + G IR RG DI AACG L +
Sbjct: 272 RVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLSTAK 329
>gi|298372852|ref|ZP_06982842.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275756|gb|EFI17307.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
F0058]
Length = 342
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 30/365 (8%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ K+S+ + L+E + +P R Q+ +WIY + F+ M++IS++ L
Sbjct: 1 MSKQSITDLNLTRLQEEFASLSLP----RYTARQVTEWIYKKRSARFEDMTNISKKNLSL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +HF S DGT+K+L +IETV IP+ R TLCVS QVG
Sbjct: 57 LAEHFDTGRQPYSMATTSADGTKKYLFSTRHG------DIETVMIPDDDRRTLCVSCQVG 110
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C ++C FC TG NL+A EI+ QVL + I+NIV
Sbjct: 111 CRMSCRFCMTGRCGFAGNLSAGEIINQVLSV-------------------DEAKNITNIV 151
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEP N V +++ I + GL++S +RIT+STSG I + LAISL
Sbjct: 152 FMGMGEPFDNLGEVLRAIEILTSEWGLAYSPKRITVSTSGLRKGIETFLDNTQCHLAISL 211
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H D R ++P+ +E ++ Y ++ RR++FEY++ +GINDS R A ++
Sbjct: 212 HNPFADERAKMMPVEHSDHIEEVVTLLHRY-DFAHQRRLSFEYIVFEGINDSVRHAEGIV 270
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L+G+ ++NLI F+ + D+ + F + + R G S IR RG DI AACG
Sbjct: 271 RLLRGLFCRVNLIRFHEVADLDLRSPDKNKMEHFRDYLNRHGIISTIRRSRGEDIEAACG 330
Query: 364 QLKSL 368
QLK+
Sbjct: 331 QLKNQ 335
>gi|242058145|ref|XP_002458218.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor]
gi|241930193|gb|EES03338.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor]
Length = 407
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 134/363 (36%), Positives = 196/363 (53%), Gaps = 24/363 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62
K L GM ELE + G M +WK +Y + + ++ ++++ R
Sbjct: 46 SKAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELTGLNKDFRK 101
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
++ +H + + D + DGTRK L + V I R T+CVSSQV
Sbjct: 102 MITEHADLKALTVKDIHTASDGTRKILFSLEDGSVIETVIIPCAR----GRTTVCVSSQV 157
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC+TG L ++L+ EI+ Q + AR L D G I+N+
Sbjct: 158 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------INNV 203
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R +E LA+S
Sbjct: 204 VFMGMGEPFHNIDNVIKASAIMVDGQGLQFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 263
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A ++++RN ++PINRKY L +L+ R L + + FEYVML G+NDS DA L
Sbjct: 264 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRKKQIVLFEYVMLSGVNDSMDDAKRL 323
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
I++++GIP KINLI FNP G ++ + I+ F + + G + +R RG D +AAC
Sbjct: 324 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 383
Query: 363 GQL 365
GQL
Sbjct: 384 GQL 386
>gi|306820530|ref|ZP_07454163.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551444|gb|EFM39402.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 360
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 107/362 (29%), Positives = 187/362 (51%), Gaps = 30/362 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++++ +E + L++ G + R QI+ +Y +GI+ F +++I + ++ + +
Sbjct: 18 KNILDYQFDEFQNILIENGFE----KYRAKQIYPLVY-KGIKTFDEINNIPKNLKDFMLE 72
Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F + I ++ + D T+K+L++ IE V + K + C+SSQVGC
Sbjct: 73 NFVVNSVSIYEKLQSKKDYTKKYLMKLE-----DGNIIECVLMKYKFGLSACISSQVGCL 127
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + VR+L++ E++ Q+L + +G+ KISNIV+M
Sbjct: 128 MGCTFCASTVGSKVRDLSSGEMIGQILAMSNDVGE-----------------KISNIVIM 170
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEP N+ N+ K + L+ R IT+ST G I + + LAISLH
Sbjct: 171 GSGEPFDNYGNLLKFFDLVMSKDTLNIGARHITVSTCGLADKIIDFADRKLQINLAISLH 230
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + R+ ++PI+RK+ ++ L+ A +Y +N R+T+EY ++ +NDS DA L++
Sbjct: 231 NPNQEKRSQIMPISRKFKIDELMRAVEYYISKTNR-RVTYEYALINEVNDSEEDAKLLVQ 289
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
++K INLIP N Y D I F + ++G ++ IR G DI ACGQ
Sbjct: 290 LVKNQLCHINLIPVNSTEHSNYKKPDNIRIQKFMNILSKNGINATIRREMGTDINGACGQ 349
Query: 365 LK 366
L+
Sbjct: 350 LR 351
>gi|291518520|emb|CBK73741.1| 23S rRNA m(2)A-2503 methyltransferase [Butyrivibrio fibrisolvens
16/4]
Length = 361
Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats.
Identities = 111/345 (32%), Positives = 179/345 (51%), Gaps = 30/345 (8%)
Query: 2 NFLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
N + + + EL + + +G P + R Q+++W++ D+ M +I + +
Sbjct: 3 NEKELTDIRSLNLTELTDFVTTDLGEP----KFRAKQLYEWMHQHLALDYDEMKNIPKSL 58
Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
+ L + + + VD +IS DGTRK+L +E+V++ K ++C+S
Sbjct: 59 KEKLVANCNYHPLKKVDLQISKIDGTRKYLFELY-----DGQMVESVWMSYKHGNSVCIS 113
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + C FC + VRNLT E+L Q+ + G ++
Sbjct: 114 SQVGCKMGCRFCASTLDGWVRNLTPSEMLGQIYAIQR-----------------DTGERV 156
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
SN+V+MG GEP+ N+DN+ K + + SD GL+ S+R IT+ST G VP I ++ EE +
Sbjct: 157 SNLVVMGTGEPMDNYDNIVKFVRLLSDENGLNISQRNITVSTCGIVPRIKQLAEEDLTIT 216
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLHA + R L+P+ KY + LIDAC +Y + RRITFEY ++ G+ND D
Sbjct: 217 LAISLHAPNQQKRAELMPVANKYEIHELIDACEYYFNKT-GRRITFEYSLVGGVNDRDED 275
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
A L +++ + +NLIP NP +++ F + +K
Sbjct: 276 AAELGQLIGHLNCHVNLIPVNPIKERDFVSPSMDRAYAFQKRLKN 320
>gi|328475785|gb|EGF46521.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes 220]
Length = 357
Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats.
Identities = 119/344 (34%), Positives = 195/344 (56%), Gaps = 26/344 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
+MG+GEP N+DNV L + + GL+ R IT+STSG P I + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278
Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR 343
+L A +NLIP+NP +Y S ++D++ F + +K+
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKK 322
>gi|193212778|ref|YP_001998731.1| ribosomal RNA large subunit methyltransferase N [Chlorobaculum
parvum NCIB 8327]
gi|193086255|gb|ACF11531.1| radical SAM enzyme, Cfr family [Chlorobaculum parvum NCIB 8327]
Length = 374
Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats.
Identities = 121/373 (32%), Positives = 179/373 (47%), Gaps = 33/373 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ + R+ELE + ++G P R Q+ +W+Y F+ M+ +++R L
Sbjct: 18 PNIRELNRQELEHLMQRLGQPA----YRARQLHQWLYSHQALSFEDMTSFGKKLREQLAG 73
Query: 67 HFSIIYPEIVDEKISCDGT--------RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
++I + + K+L++ V IE+V IP + R T C+
Sbjct: 74 SWAIRPATLDATETEPAQCAAPGAIPTSKFLVKL-----DDGVLIESVLIPSEERMTACI 128
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC+L C+FC TG R+L A EI QV L + GR
Sbjct: 129 SSQVGCALRCTFCATGQMGFKRDLVAPEITDQVFLLQQ-------------EAHRLYGRG 175
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
I+N V MGMGEPL N DNV +S+S ++ S S+R+IT+ST G VP I R+
Sbjct: 176 ITNTVFMGMGEPLLNLDNVFESISTLTEQEYRFSISERKITISTVGLVPEIGRIATSGLK 235
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LAISLH+ R ++P+ YPL+ L A Y + +T Y++L+GIND+P
Sbjct: 236 TKLAISLHSADQATRERMMPVAADYPLDELSRAISAY-NTKTGQPVTLVYMLLEGINDAP 294
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
DA L + K KINLI +N ++ F E + +G +R +G
Sbjct: 295 EDARKLARFAKRGLCKINLIDYNAIVNLKFRPGYGSAKSMFIERLLDAGLHVTVRKSQGA 354
Query: 357 DILAACGQLKSLS 369
I AACGQL + S
Sbjct: 355 TINAACGQLATRS 367
>gi|294790917|ref|ZP_06756075.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
gi|294458814|gb|EFG27167.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
Length = 424
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 181/370 (48%), Gaps = 27/370 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
M +EE A+ K+G P R Q+ + + R+ SD Q+ ++
Sbjct: 54 IHFTDMDQEERAAAMAKLGYP----SFRVKQLGQHYFAHYNREVSSYSDFPQQQAQVVEN 109
Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + E+ + T K L IE+V + +R TLC+SSQVGC
Sbjct: 110 TFFPSLIRPLAEQEADQGTTVKTLWGL-----FDGSRIESVLMKYPTRTTLCISSQVGCG 164
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RN++A EIL QV A D + ++SN+V M
Sbjct: 165 MGCPFCATGKLGLTRNMSAGEILEQVRYAARQARDGRLGQPS----------RLSNVVFM 214
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
GMGE L N+ + K++ S G S R IT+ST G VP I R+ E I V LA+S
Sbjct: 215 GMGEALGNYKAMMKAIRQISALPPDGFGISARNITVSTVGIVPGIRRLMTEGIPVRLAVS 274
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA S+ LR+ LVP+N+++ + ++DA Y ++ RR++ EY ++KGIND + A L
Sbjct: 275 LHAPSDSLRDELVPMNKRFAISQVLDAAHDYY-VATKRRVSIEYALMKGINDQAQHARLL 333
Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L +N IP NP G + S +D F + + ++G ++ +R RG DI
Sbjct: 334 AKRLNHYGDDWVHVNPIPLNPIEGSRWTASKPEDEKRFLDILHQAGIAATLRDTRGSDID 393
Query: 360 AACGQLKSLS 369
ACGQL +
Sbjct: 394 GACGQLAAKE 403
>gi|260171514|ref|ZP_05757926.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
D2]
Length = 322
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 124/338 (36%), Positives = 184/338 (54%), Gaps = 25/338 (7%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
QI W+Y + + M+++S + R LL Q++ + VDE S DGT K+L +
Sbjct: 4 FTAKQIVSWLYEKKVASIDEMTNLSLKHRELLKQNYEVGAAAPVDEMRSVDGTVKYLYKV 63
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
G +E+VYIP+ R TLCVSSQVGC + C FC TG Q NLTA +I+ Q+
Sbjct: 64 -----GENHFVESVYIPDDDRATLCVSSQVGCKMNCKFCMTGKQGYTANLTASQIINQI- 117
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
K++N+VMMGMGEPL N D V K+L + + + G ++
Sbjct: 118 ------------------HSLPERDKLTNVVMMGMGEPLDNLDEVLKALELLTANYGYAW 159
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
S +RITLST G + R EE LAISLH+ R+ L+P R Y + +++ ++
Sbjct: 160 SPKRITLSTVGLRKGLQRFIEENDCHLAISLHSPLTAQRSELMPAERAYSITEMVELLKN 219
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
Y S RR++FEY++ KG+NDS A L+K+L+G+ ++NLI F+ PG + +D
Sbjct: 220 Y-DFSKQRRLSFEYIVFKGLNDSQVYAKELLKLLRGLDCRVNLIRFHAIPGVDLEGADMD 278
Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
+ F + + G + IR+ RG DI AACG L + +
Sbjct: 279 TMTRFRDYLTSHGLFTTIRSSRGEDIFAACGMLSTAKQ 316
>gi|294786945|ref|ZP_06752199.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
gi|315226582|ref|ZP_07868370.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105]
gi|294485778|gb|EFG33412.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
gi|315120714|gb|EFT83846.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105]
Length = 404
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 122/383 (31%), Positives = 181/383 (47%), Gaps = 27/383 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L+ M +++ + + +G P R Q+ + + D SD + +
Sbjct: 38 HLVDMDQDQRVDLMKDLGYP----SFRLKQLGQHYFAHDDVDVASYSDFPSAKAQEVKEA 93
Query: 68 FSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + E+ + T K L + IE+V + SR TLC+SSQVGC +
Sbjct: 94 FFPTLITPLLEQEADHGTTIKTLWKL-----FDGSRIESVLMKYPSRTTLCISSQVGCGM 148
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RN++A EIL QV A + D E ++SN+V MG
Sbjct: 149 ACPFCATGQLGLTRNMSAGEILEQVRYASAQARDGRLGEPT----------RLSNVVFMG 198
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGE L N+ + K++ S G S R IT+ST G VP I R+ E I V LA+SL
Sbjct: 199 MGEALGNYRAMMKAIRRISAMPPEGFGISARNITISTVGIVPGIRRLMGEGIPVRLAVSL 258
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++LR+ LVP+N+++ ++DA Y L+ RR++ EY ++KGIND A L
Sbjct: 259 HAPDDELRDELVPMNKRFNTTQVLDAAHDYY-LATHRRVSIEYALMKGINDQAVHARLLA 317
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L A +N IP NP G ++ S +D F + + +G ++ +R RG DI
Sbjct: 318 KRLNRYGDNWAHVNPIPLNPIEGSKWTASKPEDEARFLDILHEAGITATLRDTRGSDING 377
Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
ACGQL + +
Sbjct: 378 ACGQLAAKELVTRAEEELAQKED 400
>gi|32266677|ref|NP_860709.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
hepaticus ATCC 51449]
gi|81665730|sp|Q7VGY9|RLMN_HELHP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|32262728|gb|AAP77775.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 369
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 135/382 (35%), Positives = 207/382 (54%), Gaps = 35/382 (9%)
Query: 1 MNF---LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS 57
MN ++ SL G EL+ L R QI+ W+Y R D M +IS
Sbjct: 1 MNIDFPFQQPSLYGYKLNELKSILS--------PAFRAKQIYHWLYHRYENDAMRMDNIS 52
Query: 58 QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET--------VYIP 109
+ +++ + +HF++ + + S DG++K+L V I+ +
Sbjct: 53 KTMQNYIREHFALSQIYPIRVEHSIDGSKKYLFETYDGHCFESVLIQMRDKKLGHKGEVV 112
Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
E + T+C+SSQ+GC + C+FC+T VRNL A EI+ QV++ +
Sbjct: 113 ESEKWTMCLSSQIGCKVGCAFCFTAKGGFVRNLHASEIVEQVVIMKKD------------ 160
Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
K NIV MGMGEPL N +NV +++ I S+S GLS S RR T+STSG P I
Sbjct: 161 --NQMAPHKRVNIVYMGMGEPLDNIENVTRAIEILSESEGLSISARRQTISTSGIAPKIK 218
Query: 230 RVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
++G+ +GV LAISLHAV + LR+ L+P+N+ Y + ++ R +P + +++ FEY+M
Sbjct: 219 QLGKLNLGVQLAISLHAVDDKLRSQLIPMNKAYNISDILTEVRAFP-IDTRKKVMFEYLM 277
Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
+KG+ND + A L+++L GI AK+NLI FNP G + + D+ F++ + + G
Sbjct: 278 IKGVNDDLKSAKKLLQLLNGIKAKVNLILFNPHEGSTFKRPEINDVRAFADFLIKRGLLC 337
Query: 349 PIRTPRGLDILAACGQLKSLSK 370
IR RG+DI AACGQL+ K
Sbjct: 338 TIRESRGIDISAACGQLREKVK 359
>gi|302380492|ref|ZP_07268957.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna
ACS-171-V-Col3]
gi|302311435|gb|EFK93451.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna
ACS-171-V-Col3]
Length = 349
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 183/365 (50%), Gaps = 27/365 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K L M +EL+E + G R Q ++ I+ I + M++ S +R
Sbjct: 1 MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDDMTNFSNNLRG 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LNQ+ I I+ S K L + +ETV++ K+ ++C+S+Q+
Sbjct: 57 KLNQYNDIKNCSIIKRINSKLDNTKKYLI----EMSDGNIVETVFMQYKTHTSICLSTQI 112
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC + + VRNL E+ Q+ L + L +I+NI
Sbjct: 113 GCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVENDLDI-----------------RINNI 155
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MG+GEPL N+DNV + + + +D G S R ITLST G V I R+ ++ G+ + I
Sbjct: 156 VLMGIGEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLADDDIGINITI 215
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH ++ RN L+PI KY +E ++DAC +Y + RI FEY +++ +NDS +
Sbjct: 216 SLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMDK 274
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+ +LK +NLI NP D+ + F E + ++ ++ IR +G+DI A
Sbjct: 275 LVSLLKNRNCLLNLITLNPIEEFNQKSPDRFKMTEFMEYMNKNNVNTTIRRKQGIDIDGA 334
Query: 362 CGQLK 366
CGQL+
Sbjct: 335 CGQLR 339
>gi|161528893|ref|YP_001582719.1| radical SAM protein [Nitrosopumilus maritimus SCM1]
gi|205829829|sp|A9A3L9|RLMN_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|160340194|gb|ABX13281.1| radical SAM enzyme, Cfr family [Nitrosopumilus maritimus SCM1]
Length = 351
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 117/367 (31%), Positives = 194/367 (52%), Gaps = 25/367 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L ++ EE+E+ ++ +G R R QI +Y + +D + + +++R +
Sbjct: 2 TDLYRLLPEEMEKLVIDMGYD----RYRADQILLPLYYKFPKDINDIPQLPKKLREEFTE 57
Query: 67 H-FSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPV--EIETVYIPEKSRGTLCVSSQV 122
++I + + +S D T K LL V + E I R T+CVS+Q+
Sbjct: 58 AGYTIGSAKEIHRVVSDDGDTTKLLLELSDGSSVETVLMQYEPTKIGGHPRSTICVSTQI 117
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG NL AE I+ QV+ LL G ++N+
Sbjct: 118 GCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQ--------------RGEHVTNL 163
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEP+ N+D + +++ I + G +R IT+ST G I ++ EE + LAI
Sbjct: 164 VFMGMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGLAI 223
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +N+LR LVP +E +I + R Y + RR+TFEY +++G+NDSP A
Sbjct: 224 SLHAPNNELRKKLVPTAGPNSVEDIIKSGRDYFKKT-GRRVTFEYALMEGVNDSPEIAHE 282
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ++L+G + +N+IP NP G ++ +K+++ F + +++SG + +R +G +I AA
Sbjct: 283 LARLLRGNGSHVNIIPINPTAG-DFKRPSEKNVLEFEQILRKSGVNCTVRVEKGTEISAA 341
Query: 362 CGQLKSL 368
CGQL++
Sbjct: 342 CGQLRTD 348
>gi|189346924|ref|YP_001943453.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245]
gi|254807162|sp|B3ED49|RLMN_CHLL2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|189341071|gb|ACD90474.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245]
Length = 361
Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats.
Identities = 116/366 (31%), Positives = 178/366 (48%), Gaps = 20/366 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ + EL A+ +G P R +Q+ +W++ R F ++ I+ +R L+
Sbjct: 6 PNIKDFTKPELIRAITSLGEPA----YRAAQLHQWLFSHRTRSFDDITIINLALRQKLSS 61
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+SI + D + + + +E V IP ++R T C+SSQ GCSL
Sbjct: 62 IYSIRTATLDDCRQEYRDDHEIPTTKFLVRMHDDETVEAVLIPAENRITACISSQAGCSL 121
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG RNLT+ E+ QV L L + G+ I+NIV MG
Sbjct: 122 HCSFCATGKTGFRRNLTSGEMTDQVFLLNDHLAE-------------HYGQTITNIVFMG 168
Query: 187 MGEPLCNFDNVKKSLSI-ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
MGEPL N +V ++ ++ + S S+R+I++ST+G +P I + V LA+SLH
Sbjct: 169 MGEPLLNMTHVLDAIETLSNHNYRYSLSQRKISISTAGIIPQIDLLARLPHKVKLAVSLH 228
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ R ++P R+YPL L + Y LS + +T Y++L+ INDSP DA L+K
Sbjct: 229 SAIQTNRESIMPAAREYPLPALKKSLAEYNRLS-GQPVTLVYMLLRDINDSPEDAKALVK 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K + KINLI +N ++ F + SG +R G I AACGQ
Sbjct: 288 FAKSLFCKINLIDYNAIVNIKFKPVYTGKSELFLRSLLDSGLQVTVRKSHGASINAACGQ 347
Query: 365 LKSLSK 370
L + S+
Sbjct: 348 LVTESR 353
>gi|116626240|ref|YP_828396.1| radical SAM protein [Candidatus Solibacter usitatus Ellin6076]
gi|123024386|sp|Q01QF9|RLMN_SOLUE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|116229402|gb|ABJ88111.1| radical SAM enzyme, Cfr family [Candidatus Solibacter usitatus
Ellin6076]
Length = 356
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 144/369 (39%), Positives = 202/369 (54%), Gaps = 27/369 (7%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N + + L+GM +L EAL R QI++ IY + +S + ++R
Sbjct: 13 NRMS-QPLVGMDLTDLREALGS-----DQPGYRAKQIYEAIYRGQAANLVQISTLPAQLR 66
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + PEI S DGTR++LL+ +ETV +P+ R T+C+SSQ
Sbjct: 67 EDLAARHEVGLPEIAHLYQSTDGTRRYLLKLE-----DGRTVETVLMPDGERDTICISSQ 121
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C FC T L R+LTA EI+ QVLL + G ++ N
Sbjct: 122 VGCPVDCKFCMTALMGLERSLTAGEIVGQVLLVARE------------NQLRQDGGRL-N 168
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
IVMMG GEPL N +NV K+ I D G S RR+T+ST+G +P IA +G E LA
Sbjct: 169 IVMMGQGEPLLNLENVVKATRILLDPAGFGLSPRRVTVSTAGIIPKIAELGREPVRPKLA 228
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISL+A + + R L+PI RKY L+ L+ AC+ YP L ++TFEYV+L+G+ND+ DA
Sbjct: 229 ISLNASTEESRQELMPITRKYHLKDLLAACKAYP-LRPWEKLTFEYVLLRGVNDTDADAR 287
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
++K+L + AK+NLI NP PG Y D + + +F ++R+ +R PRGLDI A
Sbjct: 288 RVVKLLSNLNAKVNLIALNPGPGIPYATPDPERVASFQNIVRRA-LPCFVRKPRGLDIYA 346
Query: 361 ACGQLKSLS 369
ACGQLK
Sbjct: 347 ACGQLKRNV 355
>gi|256827808|ref|YP_003151767.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641]
gi|256583951|gb|ACU95085.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641]
Length = 351
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 120/374 (32%), Positives = 181/374 (48%), Gaps = 32/374 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN S+ E L +L + G+P R QI +W+Y RG + M+D+ +
Sbjct: 1 MN----TSIDAYSLERLTSSLTEQGLPA----FRARQIIRWVYERGTLSYGEMTDLPLSL 52
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET---VYIPEKSRGTLC 117
R L P I+D +IS DG RK++L F V I + T+C
Sbjct: 53 RKSLAHQMPFAPPRIIDRQISRDGARKYVLAFSDNAEVETVAIPSRTKTAEGTPEHLTVC 112
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
S+QVGC + CSFC TGT+ L R+L E++ Q+L + +
Sbjct: 113 FSTQVGCPMACSFCATGTEGLTRSLLPGEMVQQLLTVQRDM-----------------NM 155
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIG 236
++S+ V MG GEP N+DN+ +L I ++ +G+ R IT+ST G + I
Sbjct: 156 RVSHAVAMGQGEPFLNYDNLVAALEIINEPLGIG--ARHITVSTCGILAGIDHFAHLSQQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LA+SLH+ + RN L+P PL L A + Y +S RR + EY+M+ G+ND
Sbjct: 214 YTLALSLHSAIQEKRNQLMPRCSTVPLPRLKQALKEYARVS-GRRPSVEYLMIGGVNDGT 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
D L G+ INL+P N + S QK + T+ + +++ G+ + IR+ RG
Sbjct: 273 TDLEALSSFCSGLFVHINLLPMNNIEESPFRPSPQKTMKTWKQVLEQRGWETTIRSSRGS 332
Query: 357 DILAACGQLKSLSK 370
DI ACGQLK+ +
Sbjct: 333 DIDGACGQLKNKLQ 346
>gi|117928743|ref|YP_873294.1| radical SAM protein [Acidothermus cellulolyticus 11B]
gi|205829702|sp|A0LV48|RLMN_ACIC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|117649206|gb|ABK53308.1| 23S rRNA m(2)A-2503 methyltransferase [Acidothermus cellulolyticus
11B]
Length = 430
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 120/400 (30%), Positives = 181/400 (45%), Gaps = 47/400 (11%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L E + ++G P R QI + R + M+D+ R L
Sbjct: 36 RHLADFSLAERRRWVAELGEP----SFRAVQISAHYFGRLTENPDEMTDLPASSRRELVG 91
Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG----------- 114
V E +G TRK L R +E+V + R
Sbjct: 92 VLLPPLLRPVRELACDNGLTRKILWRLS-----DGAYVESVLMRYPPRHSRHAALGAEAD 146
Query: 115 ----------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
TLCVSSQ GC + C FC TG LVRNL+A EI+ QV +A +
Sbjct: 147 ADGGSRHGRVTLCVSSQAGCGMGCPFCATGQAGLVRNLSAAEIVAQVAVAARTVARGEMA 206
Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTS 222
++SN+V MGMGEPL N+ +V ++ ++ GL S+R +T+ST
Sbjct: 207 GGPG---------RLSNVVFMGMGEPLANYRSVVDAVRRITEPPPEGLGISQRSVTVSTV 257
Query: 223 GFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
G VP I R+ E V LA+SLHA ++LRN+LVPINR++P+ ++ A Y ++ R
Sbjct: 258 GLVPAIERLATEGLAVTLAVSLHAPDDELRNVLVPINRRWPVRDVLGAAARYAEVTKR-R 316
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPGCEYLCSDQKDIVTFS 338
++ EY +++ +ND P A L +K +NLIP NP PG + S + F
Sbjct: 317 VSVEYALIRDVNDQPWRADALAAQVKEFLGRLGHVNLIPLNPTPGSPWTASTPRAQAEFV 376
Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
+ +G + +R RG ++ ACGQL + + + ++
Sbjct: 377 RRLAAAGVTVTVRDTRGREVNGACGQLAATVEFRGRTVQE 416
>gi|160947211|ref|ZP_02094378.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270]
gi|158446345|gb|EDP23340.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270]
Length = 348
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 29/365 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK + EELE+ L +G + R Q +++++ + + + + + + L
Sbjct: 4 KKIEFNSLKIEELEDLFLSLG----EKKFRAEQFFRFMHQKKNFEIENCKQLPKVLIEKL 59
Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ I I + S D T+K+L++ IETV++ S T+C+SSQVG
Sbjct: 60 KEIGYINTSSIYTKYESKLDNTKKYLIKL-----FDNRIIETVFMDYGSYCTVCISSQVG 114
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C+FC + + RNLT+ E+L Q+ L + L I+N+V
Sbjct: 115 CRMGCTFCASTKENFKRNLTSGEMLNQIYLIENDLNLT-----------------INNVV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG+GEPL N++NV L I + G + S R IT+ST G V NI ++ +E + L IS
Sbjct: 158 IMGIGEPLDNYNNVIGFLKIINSEKGKNLSLRNITISTCGLVHNIYKLADEKLPITLTIS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH R ++PI+ + ++ ++ AC++Y ++ R++FEY ++KG NDS AL L
Sbjct: 218 LHNPFQKERREIMPISDNFSIDEILKACKYYFDKTSR-RVSFEYTIIKGQNDSREHALEL 276
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
ILKG+ IN+IP N + + K I +F ++ G ++ IR +G DI AC
Sbjct: 277 KNILKGLNCHINIIPLNSIKEFDGVAPSTKYIYSFKSMLENYGINATIRKKQGDDINGAC 336
Query: 363 GQLKS 367
GQL+
Sbjct: 337 GQLRQ 341
>gi|291287807|ref|YP_003504623.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM
12809]
gi|290884967|gb|ADD68667.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM
12809]
Length = 357
Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats.
Identities = 131/374 (35%), Positives = 187/374 (50%), Gaps = 29/374 (7%)
Query: 8 SLI--GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++ M + ELE ++ G+ + R QI KW+Y RG M+D+S R L
Sbjct: 4 NIYLDSMNKFELENFVISQGM----QKFRAIQIHKWVYRRGAESVAEMTDLSIADREKLL 59
Query: 66 QHFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ D K + DG+ K+L IE V + + R T C+SSQVGC
Sbjct: 60 GMAKFTVMNVADVRKSAMDGSVKFLFSLE-----DGETIEAVVLNDGRRLTACISSQVGC 114
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC T L RNLT EI+ QV L S G K++N+V
Sbjct: 115 RMGCAFCSTAKMGLRRNLTMGEIIKQVKRLNEYLA--------------SEGTKLNNLVF 160
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
MGMGEPL N DNVK ++++ D G FS ++ITLST G + + + V LA+S+
Sbjct: 161 MGMGEPLDNLDNVKNAINVLLDDDGYGFSHKKITLSTCGLTDRLEELFAMDTPVNLAVSV 220
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+A + R L+P++ KYPL L+D + P L + IT EYV+L+G+ND+ DA L
Sbjct: 221 NAADQETRKGLMPVSNKYPLSGLMDVLKKLP-LQKRKSITIEYVLLRGVNDTLDDARKLA 279
Query: 304 KILKGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
K+L+G+ KINLI +N YL +KD + F E + + IR G DI AC
Sbjct: 280 KLLRGLDKVKINLITYNSGGDAGYLPPSEKDTLKFQEYLISNKIGVFIRKSLGRDIEGAC 339
Query: 363 GQLKSLSKRIPKVP 376
GQL++ K
Sbjct: 340 GQLRAKHDESQKSE 353
>gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum 'So ce 56']
gi|205829655|sp|A9FFJ6|RLMN_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum 'So ce 56']
Length = 389
Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats.
Identities = 145/395 (36%), Positives = 202/395 (51%), Gaps = 52/395 (13%)
Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
EE +L G Q+++WI+ RG+ D M+++ +R L
Sbjct: 13 PEEWSASLAARG----ERSFTAKQVFQWIHRRGVLDPAAMTNLPARLREHLAAEGLGEVL 68
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--------------------- 112
S DGTRK LLR V + +V P
Sbjct: 69 TPERVHRSEDGTRKLLLRLRDGATIETVLLPSVSGPGSQAQLDADAAAALDDDEDDDAAA 128
Query: 113 --------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
R T C+S+QVGC++ C FC +G L R+L AEEI QVLL R++L +
Sbjct: 129 EAGAAPRVRVTQCISTQVGCAMGCGFCASGVAGLKRHLGAEEIAGQVLLGRAMLEE---- 184
Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
G ++ N+V MGMGEPL N++ +SL + + G++ S RR+T+STSG
Sbjct: 185 -----------GEELRNVVYMGMGEPLHNYEATARSLRLLTHPEGINLSTRRVTVSTSGL 233
Query: 225 VPNIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
VP IAR+G + + LAISLHA ++ R+ L+PINRK+PL+ L+ A R YP L RRI
Sbjct: 234 VPEIARLGADFGGQIALAISLHAADDETRSALMPINRKHPLDELLAALRAYP-LPRRRRI 292
Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342
T EY ++ G ND P +A L K+L+G+P KINLIP NP Q+ + F E +
Sbjct: 293 TIEYTLVAGQNDDPAEARRLAKLLRGLPVKINLIPMNPIEASSLGPPAQERVAAFQEVLT 352
Query: 343 RSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
++GYS +R RG D+ AACGQL L + PKV R
Sbjct: 353 QAGYSCFVRRRRGDDVSAACGQLVLLGAK-PKVRR 386
>gi|225619727|ref|YP_002720984.1| putative Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae WA1]
gi|225214546|gb|ACN83280.1| Predicted Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae
WA1]
Length = 342
Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats.
Identities = 128/369 (34%), Positives = 203/369 (55%), Gaps = 30/369 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
KK S++ + +EL + ++ P + SQI WIY + F+ MS+I + +R+
Sbjct: 1 MAKKISIMNVSEDELSKFCVENNFP----KFHASQILNWIYKKYAVSFEEMSNIPKNLRN 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL++++ I +I GT+K L+ + IE+V + +K R T C+SSQV
Sbjct: 57 LLDEYYFIHNSKIETISEDEYGTQKLLISLYDKKK-----IESVILNKKDRVTFCLSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC C+FC TG+ L RNLTA+EIL + LL R++ +K+++I
Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFLLMRAVT------------------KKVNSI 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
V MGMGEPL N N+ K++ + G + R IT+STSG V I ++ ++ LA+
Sbjct: 154 VFMGMGEPLANTKNLFKAIDTINSFKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAV 213
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH++ ND+R+ ++PIN++YP+E L+ + Y + R ITFE+V++K +NDS DA
Sbjct: 214 SLHSLKNDVRDKIMPINKRYPIENLMAILKRY-SRNGKRMITFEWVLIKDVNDSVNDAYR 272
Query: 302 LIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + K P K+N+IP NP ++ I+ F +K +G R +G +ILA
Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332
Query: 361 ACGQLKSLS 369
CGQL +
Sbjct: 333 GCGQLAVKN 341
>gi|18405124|ref|NP_565909.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|15809964|gb|AAL06909.1| At2g39670/F17A14.4 [Arabidopsis thaliana]
gi|17065474|gb|AAL32891.1| Unknown protein [Arabidopsis thaliana]
gi|20197047|gb|AAB97122.2| expressed protein [Arabidopsis thaliana]
gi|23197704|gb|AAN15379.1| Unknown protein [Arabidopsis thaliana]
gi|330254610|gb|AEC09704.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 428
Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats.
Identities = 121/380 (31%), Positives = 184/380 (48%), Gaps = 29/380 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
LIGM EL+E + +G R Q+ IY R + + S++ R L
Sbjct: 64 LIGMSEPELQELAINLGQEG----YRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGG 119
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY-IPEKSRGTLCVSSQVGCSL 126
F + I + DGT K LL+ + V I +R T CVSSQVGC L
Sbjct: 120 FKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCPL 179
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG RNL EI+ QVL + +++N+V MG
Sbjct: 180 RCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFK-----------------HRVTNVVFMG 222
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
MGEP+ N +V + + + +R IT+ST G I ++ ++ LA+SLHA
Sbjct: 223 MGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA 280
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR +VP + YPLE ++ CR Y +N R++FEY +L G+ND A+ L ++
Sbjct: 281 PNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAVELAEL 339
Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
L+ +NLIP+NP G EY +K ++ F+ ++ ++ +R RGLD AACG
Sbjct: 340 LREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACG 399
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QL++ ++ P + + Q +
Sbjct: 400 QLRNKFQKSPLLTETDSQES 419
>gi|18406673|ref|NP_564755.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|15451230|gb|AAK96886.1| Unknown protein [Arabidopsis thaliana]
gi|20148295|gb|AAM10038.1| unknown protein [Arabidopsis thaliana]
gi|332195547|gb|AEE33668.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 458
Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats.
Identities = 133/363 (36%), Positives = 199/363 (54%), Gaps = 24/363 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRH 62
+K L GM L+E + G M +WK +Y + + ++++++
Sbjct: 93 QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
++++H D + + DGTRK L V V ++ R T+CVSSQV
Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGL----VIETVVIPCDRGRTTVCVSSQV 204
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FCYTG L RNLT EI+ Q + AR LL G I+N+
Sbjct: 205 GCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITNV 250
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+S
Sbjct: 251 VFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAVS 310
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA L
Sbjct: 311 LNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARRL 370
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AAC
Sbjct: 371 VELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAAC 430
Query: 363 GQL 365
GQL
Sbjct: 431 GQL 433
>gi|3249072|gb|AAC24056.1| Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE
intergenic region gb|493519 from E. coli sequence
gb|U02965 [Arabidopsis thaliana]
Length = 454
Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats.
Identities = 133/363 (36%), Positives = 199/363 (54%), Gaps = 24/363 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRH 62
+K L GM L+E + G M +WK +Y + + ++++++
Sbjct: 89 QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 144
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
++++H D + + DGTRK L V V ++ R T+CVSSQV
Sbjct: 145 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGL----VIETVVIPCDRGRTTVCVSSQV 200
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FCYTG L RNLT EI+ Q + AR LL G I+N+
Sbjct: 201 GCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITNV 246
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+S
Sbjct: 247 VFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAVS 306
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA L
Sbjct: 307 LNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARRL 366
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AAC
Sbjct: 367 VELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAAC 426
Query: 363 GQL 365
GQL
Sbjct: 427 GQL 429
>gi|330790726|ref|XP_003283447.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
gi|325086712|gb|EGC40098.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
Length = 390
Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats.
Identities = 154/358 (43%), Positives = 226/358 (63%), Gaps = 22/358 (6%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
G+ + +L E K+ P + Q+WK +Y +GI + + IS+E + ++ ++F +
Sbjct: 54 GLPKLDLIEKFEKLNFP----KYSVDQVWKLMYNKGIDQIKDFNLISKERKSIMEENFKL 109
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
I ++S DGTRK+L+ F E+E+V+IPE SRGTLCVSSQVGC+ C+F
Sbjct: 110 DTGTITKHQLSVDGTRKFLISF------DGDEVESVFIPESSRGTLCVSSQVGCTFACTF 163
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C+TGTQK RNLTA EI+ QV+ AR LL DF S R ++NIV MG GEP
Sbjct: 164 CFTGTQKFKRNLTANEIVAQVVAARKLLNDFNA----------SEERLLTNIVFMGQGEP 213
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSND 249
N+ NVKK++SI +DS GL+ K +IT+STSG VP I R+G + + LAISLH+ +++
Sbjct: 214 FYNYRNVKKAISIITDSNGLAIGKSKITVSTSGVVPIIERLGTDFPGIGLAISLHSPNDE 273
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
+R+ +V NR++P+E L+ +C + + RIT EYV L+ ++D+ +DAL+LI + K
Sbjct: 274 VRSKIVTANRQWPIEELVQSCIKF-SKTTKSRITLEYVPLQDVHDTEQDALDLIPLCKRF 332
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
P+ +N+IPFNPWPG + S I F+ ++ + + IR RG DI+AACGQLKS
Sbjct: 333 PSLVNIIPFNPWPGSPHESSTNNQIQIFANILESNNVKTTIRQSRGRDIMAACGQLKS 390
>gi|297823853|ref|XP_002879809.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325648|gb|EFH56068.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats.
Identities = 121/380 (31%), Positives = 186/380 (48%), Gaps = 26/380 (6%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
LIGM EL++ + + + R Q+ IY R + + S++ Q R L +
Sbjct: 52 LIGMSEPELQQLAINL-VLIFQEGYRGKQLHHLIYKRKVNKVEDFSNLPQTFRKELVEGG 110
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY-IPEKSRGTLCVSSQVGCSL 126
F + I + DGT K LL+ + V I +R T CVSSQVGC L
Sbjct: 111 FKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCPL 170
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG RNL EI+ QVL + +++N+V MG
Sbjct: 171 RCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFK-----------------HRVTNVVFMG 213
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
MGEP+ N +V + + + +R IT+ST G I ++ ++ LA+SLHA
Sbjct: 214 MGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA 271
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR +VP + YPLE ++ CR Y +N R++FEY +L G+ND A+ L ++
Sbjct: 272 PNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAVELAEL 330
Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
L+ +NLIP+NP G EY +K ++ F+ ++ ++ +R RGLD AACG
Sbjct: 331 LREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFASALESRKITASVRQTRGLDASAACG 390
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QL++ ++ P V + Q +
Sbjct: 391 QLRNKFQKSPLVTETDGQES 410
>gi|218189834|gb|EEC72261.1| hypothetical protein OsI_05406 [Oryza sativa Indica Group]
Length = 395
Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats.
Identities = 119/369 (32%), Positives = 179/369 (48%), Gaps = 28/369 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN-QH 67
L+G+ +L + + +G R Q+ +Y + Q S + + R L
Sbjct: 36 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + + + DGT K LL+ + V I SR T CVSSQVGC L
Sbjct: 92 WKVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDKGPSRLTACVSSQVGCPLR 151
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC TG RNL A EI+ QVL + +++N+V MGM
Sbjct: 152 CSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNVVFMGM 194
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
GEP+ N +V ++ + L +R IT+ST G I ++ ++ LA+SLHA
Sbjct: 195 GEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAP 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR +VP + YPLE L+D C++Y L RR++FEY +L GIND+ A L ++L
Sbjct: 253 NQKLRETIVPSAKSYPLEALMDDCKNYF-LETGRRVSFEYTLLAGINDAKEHAEELAELL 311
Query: 307 KGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+NLIP+NP G EY +K + F + ++ + +R RGLD AACGQ
Sbjct: 312 HTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDANAACGQ 371
Query: 365 LKSLSKRIP 373
L++ ++ P
Sbjct: 372 LRNEFQKNP 380
>gi|159462948|ref|XP_001689704.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283692|gb|EDP09442.1| predicted protein [Chlamydomonas reinhardtii]
Length = 358
Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats.
Identities = 122/369 (33%), Positives = 189/369 (51%), Gaps = 34/369 (9%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
++G ELEE + G P R R Q+ + + G R + ++ I +E R L
Sbjct: 12 ILGRDTAELEELAARYGQP----RFRAKQLLEGVLQ-GARSVEDITTIPKEWRAQLLADG 66
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ DGTRK+LL+ G +ETV IP + R T+CVSSQVGC +
Sbjct: 67 VRTGRSLLHHSVGDADGTRKFLLQL-----GDGRIVETVGIPTEDRLTVCVSSQVGCPMR 121
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC TG RNL EI+ QVL + L GR++SN+V MGM
Sbjct: 122 CTFCATGKGGFARNLAPHEIMDQVLTVQEL-----------------YGRRVSNVVFMGM 164
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
GEPL N +V ++ + +G+ + IT+ST G I R+ ++ LA+SLHA
Sbjct: 165 GEPLLNLPSVTRAYHGLNKQIGIGGA--FITISTVGVPNAIRRLAGADLKATLAVSLHAP 222
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR ++P + YP+E L++ C Y + RR+TFEY +L G+ND A L+ +L
Sbjct: 223 NQALRESIIPSAKAYPIEALLEDCAAYFKRT-GRRVTFEYTLLSGVNDEVAHAQELVALL 281
Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ + + +N+IP+NP E+ + + F+ ++ +G +R RGL+ AACGQ
Sbjct: 282 QRYNLMSHVNVIPWNPVDESEFQRPSRNRVFAFTRAVEAAGLPCTVRETRGLEAAAACGQ 341
Query: 365 LKSLSKRIP 373
L++ ++ P
Sbjct: 342 LRNQFQKTP 350
>gi|78186813|ref|YP_374856.1| hypothetical protein Plut_0951 [Chlorobium luteolum DSM 273]
gi|123771083|sp|Q3B4B8|RLMN_PELLD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78166715|gb|ABB23813.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium luteolum DSM 273]
Length = 361
Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats.
Identities = 121/367 (32%), Positives = 182/367 (49%), Gaps = 20/367 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
++ +++ + +EL+EAL I PQ R +Q+ +W++ F M+ +S +R L
Sbjct: 4 ERSNILNLRMDELKEALAAINEPQW----RAAQLHQWLFSHRAGSFDDMTTLSLPLRRKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I P + +G+ + +ETV IP +R T CVS+Q GC
Sbjct: 60 AESFYIQQPVTEKHDETMEGSPAGATEKLLIQLPDGERVETVLIPGPNRMTACVSAQAGC 119
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L CSFC TG RNL++ EI QV +L + + ISNIV
Sbjct: 120 LLGCSFCATGQMGFRRNLSSGEITGQVWALSDMLQE------------RNREASISNIVF 167
Query: 185 MGMGEPLCNFDNVKKS-LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
MGMGEPL N NV ++ L++++ S S+R+IT+ST G P I R+ + LA+S
Sbjct: 168 MGMGEPLLNTANVIEAVLNLSTRKYRFSTSQRKITISTVGITPEIDRLADTGLKTKLAVS 227
Query: 243 LHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
LH+ + R L+P + YPL+ L ++ Y + +T Y++LKGINDS DA
Sbjct: 228 LHSAIQEKREALMPQAARQYPLDRLRESLIGYASKT-GEPVTLAYMLLKGINDSEMDAKR 286
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
LI+ G KINLI +NP ++ F + ++ +G IR G I AA
Sbjct: 287 LIRYASGFFCKINLIDYNPIVNIKFEPVCDGTRERFRDILQDAGLQVTIRKSYGTPINAA 346
Query: 362 CGQLKSL 368
CGQL +
Sbjct: 347 CGQLAAD 353
>gi|297588340|ref|ZP_06946983.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516]
gi|297573713|gb|EFH92434.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516]
Length = 349
Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats.
Identities = 115/366 (31%), Positives = 188/366 (51%), Gaps = 29/366 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
K L M +EL+E + G R Q ++ I+ I D + M++ S ++R
Sbjct: 1 MQNKIVLENMTVDELKEFFVNNG----EKSFRALQYFQAIHKNRIFDPEMMTNFSNDLRK 56
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L+ + I I+ S D T+K+L+ +ETV++ K+ ++C+S+Q
Sbjct: 57 KLDNYNDIKNCSIIKRIDSKLDNTKKYLIELS-----DGNIVETVFMEYKTHTSICLSTQ 111
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
+GC + C FC + + VRNL E+ Q+ L + L G +I+N
Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVENDL-----------------GIRINN 154
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+V+MG+GEPL N+DNV + + + S+ G S R ITLST G V I ++ +E G+ +
Sbjct: 155 MVLMGIGEPLDNYDNVVRFIDLISNKEGQDMSIRNITLSTCGLVDKIIKLADEDIGINIT 214
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH ++ RN L+PI KY +E ++DAC +Y + RI FEY ++ +NDS +
Sbjct: 215 ISLHNPFDNERNQLMPIGNKYSIEEILDACDYYFDKTKR-RIGFEYTVIGNVNDSKKYMD 273
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ +LK +NLI NP D+ ++ F + ++ ++ IR +G+DI
Sbjct: 274 KLVGLLKNRNCLLNLITLNPIEEFNQKSPDRNKMMEFMNYMNKNNVNTTIRRKQGIDIDG 333
Query: 361 ACGQLK 366
ACGQL+
Sbjct: 334 ACGQLR 339
>gi|327398526|ref|YP_004339395.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
DSM 10411]
gi|327181155|gb|AEA33336.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
DSM 10411]
Length = 342
Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats.
Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 29/365 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ + +EL+ L+ +G + R QI+ ++Y + I F ++ + +EVR L +
Sbjct: 2 IDIMSLEYDELKSILIGLGYE----KYRAEQIFSFLYKQRIEGFDDITVLKKEVRRQLKE 57
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F I E + DGT+K+L + + V I E +R T+CVS+Q GC +
Sbjct: 58 QFFIYKIEEKTSYAADDGTKKYLFKLNDGMLIESVLIPM----EANRFTICVSTQAGCRM 113
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL+ EI+ QV+ + K +N+V MG
Sbjct: 114 GCKFCATGRMGFKRNLSTSEIVSQVVYI-----------------LKVNNLKTANVVYMG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
MGEPL N++N KS+ I SD GLS SKRRITLST+G P + ++ ++ + +A+SLH+
Sbjct: 157 MGEPLDNYENTVKSIKILSDDRGLSISKRRITLSTAGITPGVNKLKKDLPNINMALSLHS 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ + R++++PIN YP++ +++ + +P + +RITFEYVM+KGIND+ D L+K+
Sbjct: 217 IISKKRSMIMPINDTYPIDEVLNELKDFP-MPRRKRITFEYVMIKGINDTKDDLKALLKV 275
Query: 306 LKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ K+N+IP N G ++ + I F++ ++ G IR +G I AACG
Sbjct: 276 MSNFKCKLNIIPLNKHDLLGTKFEPTPMDRIEEFADYLRNKGMFVTIRKSKGSSINAACG 335
Query: 364 QLKSL 368
L +
Sbjct: 336 MLATK 340
>gi|296127640|ref|YP_003634892.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563]
gi|296019456|gb|ADG72693.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563]
Length = 342
Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 203/369 (55%), Gaps = 30/369 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
KK S++ + E+L + + P + SQ+ WIY + F+ MS+I + +R
Sbjct: 1 MSKKISIMNVSEEDLSKFCEENNFP----KFHASQVLDWIYKKYAVSFEDMSNIPKNLRA 56
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL++++ I +I GT+K L+ + IE+V + +K R T C+SSQV
Sbjct: 57 LLDENYFIHNSKIETISEDEYGTKKLLISLYDKKK-----IESVILQKKDRVTFCLSSQV 111
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC C+FC TG+ L RNLTA+EIL + +L R++ +K+++I
Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFILMRAVT------------------KKVNSI 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V MGMGEPL N N+ K++ + G + R IT+STSG V I ++ E ++ LA+
Sbjct: 154 VFMGMGEPLANTKNLFKAIETINSFKGFNLGIRHITISTSGEVVGIKQLIEKDLDCRLAV 213
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH++ N++R+ ++PIN++YP+E L+ + Y + R ITFE+V++K +NDS DA
Sbjct: 214 SLHSLKNEVRDKIMPINKRYPIENLMAVLKRY-SKNGKRMITFEWVLIKDVNDSVNDAYR 272
Query: 302 LIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L+ + K P K+N+IP NP + ++ I+ F +K +G R +G +ILA
Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPHLQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332
Query: 361 ACGQLKSLS 369
CGQL +
Sbjct: 333 GCGQLAVKN 341
>gi|297837501|ref|XP_002886632.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297332473|gb|EFH62891.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 458
Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats.
Identities = 133/363 (36%), Positives = 199/363 (54%), Gaps = 24/363 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRH 62
+K L GM L+E + G M +WK +Y + + ++++++
Sbjct: 93 QKVILKGMTYAALQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
++++H D + + DGTRK L V V ++ R T+CVSSQV
Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGL----VIETVVIPCDRGRTTVCVSSQV 204
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FCYTG L RNLT EI+ Q + AR LL G I+N+
Sbjct: 205 GCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITNV 250
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+S
Sbjct: 251 VFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAVS 310
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA L
Sbjct: 311 LNATTDEVRNWIMPINRKYKLSLLLETLREGLSSKHKYKVLFEYVMLAGVNDSMDDARRL 370
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AAC
Sbjct: 371 VELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAAC 430
Query: 363 GQL 365
GQL
Sbjct: 431 GQL 433
>gi|297598414|ref|NP_001045547.2| Os01g0973400 [Oryza sativa Japonica Group]
gi|57899226|dbj|BAD87375.1| radical SAM domain-containing protein-like [Oryza sativa Japonica
Group]
gi|57899699|dbj|BAD87419.1| radical SAM domain-containing protein-like [Oryza sativa Japonica
Group]
gi|215697144|dbj|BAG91138.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708729|dbj|BAG93998.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740846|dbj|BAG97002.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765571|dbj|BAG87268.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674123|dbj|BAF07461.2| Os01g0973400 [Oryza sativa Japonica Group]
Length = 397
Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats.
Identities = 119/369 (32%), Positives = 179/369 (48%), Gaps = 28/369 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN-QH 67
L+G+ +L + + +G R Q+ +Y + Q S + + R L
Sbjct: 38 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 93
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + + + DGT K LL+ + V I SR T CVSSQVGC L
Sbjct: 94 WKVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDKGPSRLTACVSSQVGCPLR 153
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC TG RNL A EI+ QVL + +++N+V MGM
Sbjct: 154 CSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNVVFMGM 196
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
GEP+ N +V ++ + L +R IT+ST G I ++ ++ LA+SLHA
Sbjct: 197 GEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAVSLHAP 254
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR +VP + YPLE L+D C++Y L RR++FEY +L GIND+ A L ++L
Sbjct: 255 NQKLRETIVPSAKSYPLEALMDDCKNYF-LETGRRVSFEYTLLAGINDAKEHAEELAELL 313
Query: 307 KGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+NLIP+NP G EY +K + F + ++ + +R RGLD AACGQ
Sbjct: 314 HTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDANAACGQ 373
Query: 365 LKSLSKRIP 373
L++ ++ P
Sbjct: 374 LRNEFQKNP 382
>gi|269955985|ref|YP_003325774.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM
15894]
gi|269304666|gb|ACZ30216.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM
15894]
Length = 389
Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats.
Identities = 109/370 (29%), Positives = 169/370 (45%), Gaps = 24/370 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ E A+ ++G H R Q+ + D +DI
Sbjct: 34 RHFADLTHAERVAAVAELG----HQGFRAKQLATHYFAHYTTDPADWTDIPAA---AREG 86
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ ++P ++ + + + + ++ IE+V + R TLC+SSQVGC +
Sbjct: 87 MAAALFPPLLTARRTLEADKGTTVKTLWGLH-DGTRIESVLMRYPRRSTLCISSQVGCGM 145
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG RNL+A E+L QV LA L IP +++N+V MG
Sbjct: 146 ACPFCATGQLGFTRNLSAAEMLEQVRLAMRSLA---------LGEIPGGPTRLNNLVFMG 196
Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
GE L N+ + + A G S R IT+ST G VP + ++ E + LA+SL
Sbjct: 197 EGEGLINYRAIMTCIRTLVADAPEGFGMSARNITVSTVGLVPGMKKLAAEGLPLTLALSL 256
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +DLR+ LVPIN ++ ++ +DA R Y + RR++ EY ++K +ND A L
Sbjct: 257 HAPDDDLRSELVPINTRFSVDEALDAARAYFEAT-GRRVSIEYALIKDMNDHAWRADLLG 315
Query: 304 KILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +N IP NP PG + S++ F ++ G + +R RG DI
Sbjct: 316 TKLNARGKGWVHVNPIPLNPTPGSIWTASERAVEDEFVARLRGHGIPTTVRDTRGSDIDG 375
Query: 361 ACGQLKSLSK 370
ACGQL + +
Sbjct: 376 ACGQLAAEEE 385
>gi|332826949|gb|EGJ99746.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
ATCC BAA-286]
Length = 335
Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats.
Identities = 124/364 (34%), Positives = 189/364 (51%), Gaps = 30/364 (8%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M +E + G+P R QI W+Y + + M++IS R LL++ + +
Sbjct: 1 MTMDEFYGVAGECGLP----RFAAKQIADWVYKKRVTSIDQMTNISVANRALLSEKYDVG 56
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
++ + S DGT K+L + IE V IPE R TLCVSSQVGC + C FC
Sbjct: 57 RYIPLEFQQSVDGTVKYLFKTE-----NDKLIEAVMIPEDDRATLCVSSQVGCKMNCLFC 111
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
TG Q NLTA EIL Q+ R ++N+V MGMGEPL
Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVREA-------------------EDLTNVVFMGMGEPL 152
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
N++ +KK+L I + G+++S +RIT+ST+G P + R +E LAIS+H+ + R
Sbjct: 153 DNYEQLKKTLEIMTADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQR 212
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
++P + +P+ ++D + Y + RR++FEY+M NDS A L ++L+GI
Sbjct: 213 LSIMPAEKAFPIAGVMDLLKEY-DWTKQRRLSFEYIMFDNFNDSLVHAKELAQMLRGIEC 271
Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS-LSK 370
++NLI F+ P S ++ + F + + G +S IR RG DI AACG L + SK
Sbjct: 272 RVNLIRFHAIPNVNLKTSTKEKMEAFRDYLTSKGVTSTIRASRGEDIFAACGMLSTMKSK 331
Query: 371 RIPK 374
+ +
Sbjct: 332 KNEE 335
>gi|300871714|ref|YP_003786587.1| putative Fe-S cluster redox enzyme [Brachyspira pilosicoli 95/1000]
gi|300689415|gb|ADK32086.1| predicted Fe-S cluster redox enzyme [Brachyspira pilosicoli
95/1000]
Length = 342
Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats.
Identities = 127/368 (34%), Positives = 203/368 (55%), Gaps = 30/368 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S++ + E+L + ++ P + SQI WIY + F MS+I +++R LL
Sbjct: 3 KKISIMNVSEEDLSKFCIENNFP----KFHASQILNWIYKKYAISFDEMSNIPKDLRVLL 58
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++++ I +I GTRK L+ + IE+V + + R T C+SSQVGC
Sbjct: 59 DENYFIHNSKIESITEDEYGTRKLLISLYDKKK-----IESVILGKNDRVTFCLSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
C+FC TG+ L RNLTA+EIL + +L R++ +K+++IV
Sbjct: 114 GYGCAFCATGSMGLSRNLTADEILAEFILMRAVT------------------KKVNSIVF 155
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MGMGEPL N N+ K++ + G + R IT+STSG V I ++ ++ LA+SL
Sbjct: 156 MGMGEPLANTKNLFKAIDTINSYKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAVSL 215
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H++ N++R+ ++PIN++YP+E LI+ + Y + R ITFE+V++K +NDS DA L+
Sbjct: 216 HSLKNEVRDKIMPINKRYPIENLINILKRY-SKNGKRMITFEWVLIKDVNDSVNDAYRLV 274
Query: 304 KILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ K P K+N+IP NP ++ I+ F +K +G R +G +ILA C
Sbjct: 275 NLKKEFPFKVNIIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILAGC 334
Query: 363 GQLKSLSK 370
GQL ++
Sbjct: 335 GQLAVKNQ 342
>gi|332886413|gb|EGK06657.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
mossii DSM 22836]
Length = 341
Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats.
Identities = 123/356 (34%), Positives = 188/356 (52%), Gaps = 29/356 (8%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M E+ + + G+P R QI W+Y + I M+++S R LL++ + I
Sbjct: 1 MTMEDFYGVVGECGLP----RFSAKQIADWVYKKRITSIDEMTNLSVANRALLSEKYDIG 56
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
++ + S DGT K+L + IE V IPE R TLCVSSQVGC + C FC
Sbjct: 57 RYNPLEFQQSVDGTVKYLFKTEKEK-----LIEAVMIPEDDRATLCVSSQVGCKMNCLFC 111
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
TG Q NLTA EIL Q+ R ++N+V MGMGEPL
Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVREA-------------------ESLTNVVFMGMGEPL 152
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
N++ +KK+L I + G+++S +RIT+ST+G P + R +E LAIS+H+ + R
Sbjct: 153 DNYEELKKTLEIMTADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQR 212
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
++P + +P+ ++D R Y + RR++FEY+M NDS A L ++L+G+
Sbjct: 213 LSIMPAEKAFPITGVMDLLRQY-DWTKQRRLSFEYIMFDNFNDSLIHAKELTQMLRGVEC 271
Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
++NLI F+ P + S ++ + F + + + G +S IR RG DI AACG L +
Sbjct: 272 RVNLIRFHAIPNVDLKTSTKEKMEAFRDYLTKKGVTSTIRASRGEDIFAACGMLST 327
>gi|212723564|ref|NP_001132113.1| hypothetical protein LOC100193530 [Zea mays]
gi|195654259|gb|ACG46597.1| hypothetical protein [Zea mays]
Length = 410
Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats.
Identities = 117/379 (30%), Positives = 180/379 (47%), Gaps = 29/379 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-L 63
+ +L+G+ +L + + +G R Q+ +Y + Q + + + R L
Sbjct: 44 SRRALLGLSEPQLRQLAIDLG----QQSYRGKQLHDLLYKSRAKQIQEFNHVPKAFREAL 99
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY-IPEKSRGTLCVSSQV 122
L +S+ + + DGT K LL+ + V I SR T CVSSQV
Sbjct: 100 LGAGWSVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDNKGSSRLTACVSSQV 159
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC L CSFC TG RNL EI+ QVL +++N+
Sbjct: 160 GCPLRCSFCATGKGGFARNLQPHEIVEQVLAIEETFK-----------------HRVTNV 202
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
V MGMGEP+ N +V ++ + L +R +T+ST G I + ++ LA+
Sbjct: 203 VFMGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVGVPNTIKMLASHKLQSTLAV 260
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + LR +VP + YPL L+D C+ Y L RR++FEY +L GIND A
Sbjct: 261 SLHAPNQKLRETIVPSAKSYPLGALMDDCKSYF-LETGRRVSFEYTLLAGINDEKEHAEE 319
Query: 302 LIKILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L+ +NLIP+NP G EY +K + F + ++ + +R RGLD
Sbjct: 320 LAELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDAN 379
Query: 360 AACGQLKSLSKRIPKVPRQ 378
AACGQL++ ++ P + +
Sbjct: 380 AACGQLRNEFQKNPLLEIE 398
>gi|298377278|ref|ZP_06987231.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19]
gi|298265692|gb|EFI07352.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19]
Length = 334
Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats.
Identities = 127/358 (35%), Positives = 176/358 (49%), Gaps = 29/358 (8%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M EEL+ ++ +P Q+ WIY + I M++I+ R LL F I
Sbjct: 1 MTLEELKGVASEVSLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
+ + S DGT K+L G +E+VYIP R TLCVSSQVGC + C FC
Sbjct: 57 VYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQVGCKMNCLFC 111
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
TG Q NLTA +IL Q+ ++NIV MGMGEPL
Sbjct: 112 MTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNIVFMGMGEPL 152
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
N D + K L I + G ++S +RIT+ST G + R EE LA+SLH+ R
Sbjct: 153 DNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPMER 212
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L +L GIP
Sbjct: 213 LSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGIPC 271
Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
++NLI F+ P SD + F + + G IR RG DI AACG L +
Sbjct: 272 RVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLSTAK 329
>gi|167753918|ref|ZP_02426045.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216]
gi|167658543|gb|EDS02673.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216]
Length = 344
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 123/360 (34%), Positives = 186/360 (51%), Gaps = 29/360 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L G +LE ++ +P R QI +W+Y + + MSD+S R LL + +
Sbjct: 7 LYGQTLPQLEALCNRLEMP----RFAAKQIARWLYDKHATTIEAMSDLSARHRALLAETY 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ IS DGT+K+L R IE+ YIP+ R TLC+SSQ GC + C
Sbjct: 63 EVGLTAPEKVSISTDGTKKYLYRTS-----QNHFIESAYIPDGDRATLCISSQAGCRMGC 117
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC TG Q L +L+ EIL Q+ +++N+V MGMG
Sbjct: 118 RFCATGRQGLQHSLSTNEILNQI-------------------ESLPERERLTNVVFMGMG 158
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EPL N D++ +L + + + G +S RIT+ST+G + R E V LA+SLH
Sbjct: 159 EPLDNLDSLLPALEVLTSAWGFGWSPTRITVSTAGVASRLERFLEATQVHLAVSLHNPFP 218
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
R ++PI + +P+ +++ R Y ++ RR++FEY+++ G+NDSPR L ++L G
Sbjct: 219 HERAEIMPIEKAWPIREVVEILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLDG 277
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
I +INLI F+ PG Y D + ++ F + + G + IRT RG DI AACG L +
Sbjct: 278 IKCRINLIRFHKIPGSPYFSPDDRAMIAFRDALTAKGIHTTIRTSRGEDIQAACGLLSTA 337
>gi|224538713|ref|ZP_03679252.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519681|gb|EEF88786.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus
DSM 14838]
Length = 346
Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats.
Identities = 126/359 (35%), Positives = 186/359 (51%), Gaps = 29/359 (8%)
Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
+E + ++G+P QI W+Y + + M+++S + R LL + + V+
Sbjct: 15 QEVVKRLGMPG----FSAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGAEAPVE 70
Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
S DGT K+L R G +E VYIP++ R TLCVSSQVGC + C FC TG Q
Sbjct: 71 AMRSTDGTVKYLYR-----AGDKNFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125
Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
NLTA +I+ Q+ K++N+VMMGMGEPL N D V
Sbjct: 126 FSANLTANQIINQI-------------------NSLPERDKLTNVVMMGMGEPLDNLDEV 166
Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
K+L I + S G +S +RITLST G R EE LA+SLH+ R L+P
Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEESECHLAVSLHSPVALQRRELMPA 226
Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
+ + + ++D ++Y S RR++FEY++ KG+NDS A L+K+L+G+ +INLI
Sbjct: 227 EKSFSITEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285
Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
F+ PG + +D + + + + G + IR RG DI AACG L + + K
Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLSTAKQEENKQE 344
>gi|302800564|ref|XP_002982039.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii]
gi|300150055|gb|EFJ16707.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii]
Length = 425
Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 194/372 (52%), Gaps = 30/372 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL- 64
++ L+G +EL++ ++G R R Q++ +Y + Q +++S+ R L
Sbjct: 70 RKFLLGKSEKELQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLI 125
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ + + I + S DGT K LL+ + V I E +R T+CVSSQVGC
Sbjct: 126 SEGWEVGRSPIHHKVNSVDGTIKVLLKLKDSRLIETVGIPA--DEENNRLTVCVSSQVGC 183
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L C+FC TG R+L EI+ QVL+ + ++SN+V
Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIFKQ-----------------RVSNVVF 226
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MGMGEP+ N +V + ++ +G+ +R IT+ST G +I ++ ++ LA+SL
Sbjct: 227 MGMGEPMLNMASVLAAHRCLNEDIGIG--QRMITISTVGVPNSIRKLAAHKLQSTLAVSL 284
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR +VP + YPL+ L++ C+ Y ++ RR++FEY +L G+NDS A L
Sbjct: 285 HAPNQRLREQIVPSAKSYPLDALMEDCKEYFSIT-GRRVSFEYTLLAGVNDSKELAFELG 343
Query: 304 KILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++L +NLIP+NP + QK + TF E + + ++ +R RGLD AA
Sbjct: 344 ELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANAA 403
Query: 362 CGQLKSLSKRIP 373
CGQL++ ++ P
Sbjct: 404 CGQLRNQFQKTP 415
>gi|225449545|ref|XP_002283725.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|296086245|emb|CBI31686.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 120/369 (32%), Positives = 185/369 (50%), Gaps = 28/369 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
L+GM +EL++ L +G R Q+ IY R +++ Q S + Q R+ L +
Sbjct: 45 LLGMSEQELQQLSLDLG----QQSYRGKQLHHLIYKRKVKEIQHFSQLPQAFRNDLQEGG 100
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + I + DGT K L++ + V I + R T CVSSQVGC L
Sbjct: 101 WRVGRSSIYQSVTAADGTVKLLIKLADNRLVETVGIPVEHDKGSFRLTACVSSQVGCPLR 160
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC TG RNL EI+ QVL + +++N+V MGM
Sbjct: 161 CSFCATGKGGYSRNLQRHEIVEQVLAIEEIFKQ-----------------RVTNVVFMGM 203
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
GEP+ N +V ++ + + +R IT+S+ G I ++ ++ LAISLHA
Sbjct: 204 GEPMLNLKSVIEAHRCLNKD--VQIGQRMITISSVGVPNTIKKLASYKLQSTLAISLHAP 261
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND+ A+ L ++L
Sbjct: 262 NQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYTLLAGVNDAVEHAIELAELL 320
Query: 307 KGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+NLIPFNP G E+ K + F+ ++ + +R RGLD AACGQ
Sbjct: 321 HEWGPGYHVNLIPFNPIEGSEFQRPYNKAVQAFAGALESRKVTVSVRQTRGLDASAACGQ 380
Query: 365 LKSLSKRIP 373
L++ ++IP
Sbjct: 381 LRNEFQKIP 389
>gi|168015505|ref|XP_001760291.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688671|gb|EDQ75047.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 433
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 129/382 (33%), Positives = 197/382 (51%), Gaps = 27/382 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRHL 63
K SL M ELE + G R + +W+ +Y G + + +++E L
Sbjct: 72 KVSLKDMTFPELERWVESHGHKAS----RAAMLWRHLYGNGKWVESPAVIPRLNKEFVSL 127
Query: 64 LNQHFSIIY-PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121
L + ++ D + DGTRK + +ETV IP R T+CVSSQ
Sbjct: 128 LEERAEFAPNLQLRDVHTARDGTRKLVFFLEEY----GASVETVVIPGPRGRVTVCVSSQ 183
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
+GC++ C FC+T L NL+ +I+ Q+++A ++ G ++N
Sbjct: 184 IGCAMNCQFCFTAKMGLRGNLSTAQIVEQLVVASRIVSKDLG--------------HVTN 229
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+V MGMGEPL N D+V ++ I + GL S R++T+STSG VP I + LA+
Sbjct: 230 VVFMGMGEPLHNIDSVIRAAEIMVNDKGLHLSPRKVTISTSGLVPQIRKFCRSSECALAV 289
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDAL 300
SL+A ++D+R+ ++PINRKY + L+D + + EYVMLK +NDS DA
Sbjct: 290 SLNATTDDIRDQIMPINRKYNIRTLLDCVKEEMITHRPGESVFLEYVMLKNVNDSEEDAT 349
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
LI+++K IP KINLI FN PG + + +++ F + + +G IR RG D
Sbjct: 350 RLIELVKDIPCKINLIMFNSHPGSAFEPTPLVEVLRFRDRVADAGLVVHIRNSRGDDEKM 409
Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
ACGQL ++ R P+ +QEMQ
Sbjct: 410 ACGQLGTVLPRSPRRRKQEMQE 431
>gi|319948052|ref|ZP_08022226.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea
P4]
gi|319438291|gb|EFV93237.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea
P4]
Length = 369
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 120/369 (32%), Positives = 184/369 (49%), Gaps = 26/369 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
+ + A+ +G+P R Q+ + R D + M+D+ ++R +
Sbjct: 19 RHFADLDSDGRAVAMGDLGVP----SFRGKQLANQYFGRLEADPREMTDLPADLRDRVGQ 74
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F + + TRK L + +E+V + R T+C+SSQ GC
Sbjct: 75 ELFPPLTTSLRHVSADEGTTRKTLWKLH-----DGSLVESVLMRYPDRATVCISSQAGCG 129
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EIL QV +A L D IP ++SN+V M
Sbjct: 130 MACPFCATGQGGLQRNLSTAEILEQVRVAARALRD---------GEIPGGPGRLSNVVFM 180
Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
GMGEPL N+ V ++ I+ G S+R +T+ST G VP I ++ EE V LA+S
Sbjct: 181 GMGEPLANYKRVLAAVRGIISPPPSGFGLSQRSVTVSTVGVVPAIHKLAEEGLQVTLAVS 240
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LR+ LVP+N ++P+ ++DA RHY + RR++ EY +++ +ND L
Sbjct: 241 LHTPDDELRDTLVPVNNRWPVTEVMDAARHYADAT-GRRVSIEYALIRDVNDQVWRGEML 299
Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++L A +NLIP NP PG E+ S + F ++ +G S +R RG DI
Sbjct: 300 GRLLAQRLGPMAHVNLIPLNPTPGSEWDASPRHQQDAFVAAVRAAGVSCTVRDTRGSDID 359
Query: 360 AACGQLKSL 368
AACGQL +
Sbjct: 360 AACGQLAAE 368
>gi|302844849|ref|XP_002953964.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f.
nagariensis]
gi|300260776|gb|EFJ44993.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f.
nagariensis]
Length = 438
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 122/371 (32%), Positives = 186/371 (50%), Gaps = 34/371 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
+++G ELE+ + G P R R Q+ + + ++G + ++ I + R L
Sbjct: 90 ITILGSELTELEDLAERYGQP----RFRAKQLLEGV-LKGAHSVEEITAIPKSWRAQLLA 144
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ DGTRK+LL+ +ETV IP + R T+CVSSQVGC
Sbjct: 145 DGVRSGRSRLHHSVGDEDGTRKFLLQLH-----DGRIVETVGIPTEDRLTVCVSSQVGCP 199
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG RNL EIL QVL + L GR++SN+V M
Sbjct: 200 MRCTFCATGKGGFARNLAPHEILDQVLTVQEQL-----------------GRRVSNVVFM 242
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N V ++ + +G+ + IT+ST G I R+ LA+SLH
Sbjct: 243 GMGEPLLNLPAVVRAYQGLNQQVGIGGA--FITISTVGVPNAIPRLAASSLKATLAVSLH 300
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + LR L+P + YPLE LI C Y ++ RR+TFEY +L G+ND A L
Sbjct: 301 APNQALRERLIPSAKAYPLEALIQDCVTYYRIT-GRRVTFEYTLLSGVNDELEHARELTA 359
Query: 305 ILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+L+ + + +N+IP+NP E++ + + F ++ +G + +R RGL+ AAC
Sbjct: 360 LLRRHDLMSHVNIIPWNPVDESEFVRPSRNRVFAFRRAVEAAGLACTVRETRGLEAAAAC 419
Query: 363 GQLKSLSKRIP 373
GQL++ ++ P
Sbjct: 420 GQLRNRFQKQP 430
>gi|30687969|ref|NP_850319.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|330254611|gb|AEC09705.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 431
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 120/380 (31%), Positives = 184/380 (48%), Gaps = 26/380 (6%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
LIGM EL+E + + + R Q+ IY R + + S++ R L
Sbjct: 64 LIGMSEPELQELAINL-VLIFQEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGG 122
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY-IPEKSRGTLCVSSQVGCSL 126
F + I + DGT K LL+ + V I +R T CVSSQVGC L
Sbjct: 123 FKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCPL 182
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TG RNL EI+ QVL + +++N+V MG
Sbjct: 183 RCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFK-----------------HRVTNVVFMG 225
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
MGEP+ N +V + + + +R IT+ST G I ++ ++ LA+SLHA
Sbjct: 226 MGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA 283
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR +VP + YPLE ++ CR Y +N R++FEY +L G+ND A+ L ++
Sbjct: 284 PNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAVELAEL 342
Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
L+ +NLIP+NP G EY +K ++ F+ ++ ++ +R RGLD AACG
Sbjct: 343 LREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACG 402
Query: 364 QLKSLSKRIPKVPRQEMQIT 383
QL++ ++ P + + Q +
Sbjct: 403 QLRNKFQKSPLLTETDSQES 422
>gi|124026587|ref|YP_001015702.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
NATL1A]
gi|205829803|sp|A2C4M8|RLMN_PROM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123961655|gb|ABM76438.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
NATL1A]
Length = 359
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 113/366 (30%), Positives = 180/366 (49%), Gaps = 37/366 (10%)
Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIV 76
EE + G R QI +WIY RG + +S + ++ R L + I + +
Sbjct: 22 EEFARQEG----EKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEI 77
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+ ++ D T K L+ +ETV IP R T+CVSSQ+GC + C FC TG
Sbjct: 78 NRVVAEDETLKLLM-----GTFDGEIVETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKG 132
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
L R+L EI+ QV+ R + R+ +++V MGMGEPL N N
Sbjct: 133 GLNRSLDVNEIVDQVISVRETM-----------------NRRPTHVVFMGMGEPLLNIQN 175
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLAISLHAVSND 249
V S+ + +G+ +R+IT+ST G ++ + + + LA+SLHA +
Sbjct: 176 VLDSIECLTSDIGIG--QRKITVSTVGIPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQT 233
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR +++P YP+ L+ C+ Y L+ RR++FEY++L G+ND A L +++G
Sbjct: 234 LRELIIPSASSYPINSLLKDCKKYIDLT-GRRVSFEYILLGGLNDKDIHAEQLANLMRGF 292
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+ +NLI +NP + Q + F E ++ G + +R RG D AACGQL+ +
Sbjct: 293 QSHVNLIAYNPIAEENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLRRQT 352
Query: 370 KRIPKV 375
K+
Sbjct: 353 IDKIKI 358
>gi|72382850|ref|YP_292205.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. NATL2A]
gi|123746249|sp|Q46J26|RLMN_PROMT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|72002700|gb|AAZ58502.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str.
NATL2A]
Length = 359
Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats.
Identities = 113/366 (30%), Positives = 180/366 (49%), Gaps = 37/366 (10%)
Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIV 76
EE + G R QI +WIY RG + +S + ++ R L + I + +
Sbjct: 22 EEFARQEG----EKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEI 77
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+ ++ D T K L+ +ETV IP R T+CVSSQ+GC + C FC TG
Sbjct: 78 NRVVAEDETLKLLM-----GTFDGEIVETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKG 132
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
L R+L EI+ QV+ R + R+ +++V MGMGEPL N N
Sbjct: 133 GLNRSLDVNEIVDQVISVRETM-----------------NRRPTHVVFMGMGEPLLNIRN 175
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLAISLHAVSND 249
V S+ + +G+ +R+IT+ST G ++ + + + LA+SLHA +
Sbjct: 176 VLDSIECLTSDIGIG--QRKITVSTVGIPNTLSDLAKLAQDRLGRVKFTLAVSLHAPNQT 233
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR +++P YP+ L+ C+ Y L+ RR++FEY++L G+ND A L +++G
Sbjct: 234 LRELIIPSASSYPINSLLKDCKKYIELT-GRRVSFEYILLGGLNDKDIHAEQLANLMRGF 292
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+ +NLI +NP + Q + F E ++ G + +R RG D AACGQL+ +
Sbjct: 293 QSHVNLIAYNPIAEENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLRRQT 352
Query: 370 KRIPKV 375
K+
Sbjct: 353 IDKIKI 358
>gi|189467727|ref|ZP_03016512.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM
17393]
gi|189435991|gb|EDV04976.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM
17393]
Length = 346
Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats.
Identities = 126/359 (35%), Positives = 186/359 (51%), Gaps = 29/359 (8%)
Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
+EA+ ++G+P QI W+Y + + M+++S + R LL + + V+
Sbjct: 15 QEAVKRLGMPG----FAAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGADAPVE 70
Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
S DGT K+L R G +E VYIP++ R TLCVSSQVGC + C FC TG Q
Sbjct: 71 AMRSVDGTVKYLYR-----AGDKHFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125
Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
NLTA +I+ Q+ K++N+VMMGMGEPL N D V
Sbjct: 126 FTANLTANQIINQI-------------------NSLPERDKLTNVVMMGMGEPLDNLDEV 166
Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
K+L I + S G +S +RITLST G R E LA+SLH+ R L+P
Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEGSECHLAVSLHSPVALQRRELMPA 226
Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
+ + + ++D ++Y S RR++FEY++ KG+NDS A L+K+L+G+ +INLI
Sbjct: 227 EKAFSITEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285
Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
F+ PG + +D + + + + G + IR RG DI AACG L + + K
Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLSTAKQEENKQE 344
>gi|302766119|ref|XP_002966480.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii]
gi|300165900|gb|EFJ32507.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii]
Length = 425
Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats.
Identities = 117/372 (31%), Positives = 194/372 (52%), Gaps = 30/372 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL- 64
++ L+G ++L++ ++G R R Q++ +Y + Q +++S+ R L
Sbjct: 70 RKFLLGKSEKQLQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLI 125
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++ + + I + S DGT K LL+ + V I E +R T+CVSSQVGC
Sbjct: 126 SEGWEVGRSPIHHKVNSVDGTIKVLLKLKDSRLIETVGIPA--DEENNRLTVCVSSQVGC 183
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L C+FC TG R+L EI+ QVL+ + ++SN+V
Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIFKQ-----------------RVSNVVF 226
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MGMGEP+ N +V + ++ +G+ +R IT+ST G +I ++ ++ LA+SL
Sbjct: 227 MGMGEPMLNMASVLAAHRCLNEDIGIG--QRMITISTVGVPNSIRKLAAHKLQSTLAVSL 284
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR +VP + YPL+ L++ C+ Y ++ RR++FEY +L G+NDS A L
Sbjct: 285 HAPNQRLREQIVPSAKSYPLDALMEDCKEYFSIT-GRRVSFEYTLLAGVNDSKELAFELG 343
Query: 304 KILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++L +NLIP+NP + QK + TF E + + ++ +R RGLD AA
Sbjct: 344 ELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANAA 403
Query: 362 CGQLKSLSKRIP 373
CGQL++ ++ P
Sbjct: 404 CGQLRNQFQKTP 415
>gi|194700820|gb|ACF84494.1| unknown [Zea mays]
Length = 409
Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats.
Identities = 135/363 (37%), Positives = 197/363 (54%), Gaps = 24/363 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62
K L GM ELE + G M +WK +Y + + ++ ++++ R
Sbjct: 48 SKAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRK 103
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
++ +H + + D I+ DGTRK L + V I R T+CVSSQV
Sbjct: 104 MITEHADLKALTMKDIHIASDGTRKILFSLEDGSVIETVIIPCAR----GRTTICVSSQV 159
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC+TG L ++L+ EI+ Q + AR L D G I+N+
Sbjct: 160 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELGS--------------INNV 205
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R +E LA+S
Sbjct: 206 VFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 265
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A ++++RN ++PINRKY L +L+ R L + + FEYVML G+NDS DA L
Sbjct: 266 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVMLSGVNDSMDDAKRL 325
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
I++++GIP KINLI FNP G ++ + I+ F + + G + +R RG D +AAC
Sbjct: 326 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 385
Query: 363 GQL 365
GQL
Sbjct: 386 GQL 388
>gi|251791823|ref|YP_003006543.1| Cfr family radical SAM protein [Aggregatibacter aphrophilus NJ8700]
gi|247533210|gb|ACS96456.1| radical SAM enzyme, Cfr family [Aggregatibacter aphrophilus NJ8700]
Length = 311
Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats.
Identities = 136/317 (42%), Positives = 180/317 (56%), Gaps = 18/317 (5%)
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+L
Sbjct: 2 AEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGCALA 55
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC T Q RNLT EI+ QV A ++G+F R I+N+VMMGM
Sbjct: 56 CTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVMMGM 105
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLHA +
Sbjct: 106 GEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPN 165
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLIKI 305
++LR+ +VP+N+KY ++ LID+ Y +SN ++T EYVML +ND A L ++
Sbjct: 166 DELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLAEV 225
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LK P KINLIP+NP+P Y S I F + + G + +R RG DI AACGQL
Sbjct: 226 LKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQL 285
Query: 366 KSLSKRIPKVPRQEMQI 382
K Q+ +
Sbjct: 286 AGDVIDRTKRTAQKKRF 302
>gi|332298026|ref|YP_004439948.1| Ribosomal RNA large subunit methyltransferase N [Treponema
brennaborense DSM 12168]
gi|332181129|gb|AEE16817.1| Ribosomal RNA large subunit methyltransferase N [Treponema
brennaborense DSM 12168]
Length = 342
Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats.
Identities = 117/366 (31%), Positives = 173/366 (47%), Gaps = 31/366 (8%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M + K S+ G++ EEL +P + R QI+KW+ G FQ M ++ Q +
Sbjct: 1 MATMDKISVAGLLPEELSA------LPGVSPQFRGKQIFKWL-GNGAASFQEMRNLPQHL 53
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L++ ++ +I E DGT K + + R T CVS
Sbjct: 54 RDSLSETAAVRSSQIAQELRDPDGTVKLQITLHDGAC----IETVLLTDSSGRKTACVSC 109
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C+FC TG L RNL A EI+ Q L + G K+
Sbjct: 110 QAGCAMGCAFCQTGKLGLARNLDAAEIVEQFLYLEQVSG------------------KLD 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
NIV MGMGEP+ N V+K++++ + G S RRIT+STSG + I + + + L
Sbjct: 152 NIVFMGMGEPMMNLSAVRKAVAVLTHPEGRGLSARRITVSTSGIIKGIYDLADNGPHMRL 211
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SL +LR L+P+ + PL L A +Y S R T E +L G+N A
Sbjct: 212 AVSLTTADPELRERLMPVTKGNPLPELQKAIAYYTEKSKK-RCTLEAALLAGMNTGTASA 270
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
LI+ +G+ INLIP+NP PG + + F ++++ + +RT RG I
Sbjct: 271 ERLIEFARGLDVHINLIPWNPVPGLPFAEPSAAECTAFVRLLEKARLNVTLRTRRGRKIG 330
Query: 360 AACGQL 365
ACGQL
Sbjct: 331 GACGQL 336
>gi|315925829|ref|ZP_07922036.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620938|gb|EFV00912.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC
23263]
Length = 384
Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats.
Identities = 114/366 (31%), Positives = 189/366 (51%), Gaps = 31/366 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+L G+ + +G P + R Q+++W+Y + +++ +++R L
Sbjct: 38 NLFGLTLAGCSALMRDLGEP----KFRGRQLFEWLYGKRAMAVDACTNLPKKLRETLKTR 93
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ I + E++ + + K +L + +ETV + +LCVSSQVGC++
Sbjct: 94 WIIDWGEVLGVQADLEDGTKKMLI----RLADGECVETVLMAYDYGYSLCVSSQVGCAMG 149
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC + LVRNLTA E+ Q+ L + G +IS +V+MG+
Sbjct: 150 CAFCASTKGGLVRNLTAGEMAAQIALVE-----------------AAEGVRISRVVVMGI 192
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL N+DN+ + + I + G RRIT+ST G VP I R+ +E + LAISLH+
Sbjct: 193 GEPLANYDNLLRFIQIL--NQGFGIGMRRITVSTCGIVPMIERLADEALEINLAISLHSP 250
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+R ++P R+YPL+ L+ C++Y + RR+TFEY ++ G+ND DA LI +
Sbjct: 251 DQAVREQIMPAARRYPLDRLLKTCKNYFNKT-GRRVTFEYALMAGVNDRDEDAKALIGLF 309
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
G +NLI NP + S +++ F++ +K G + IR G +I AACGQL+
Sbjct: 310 SGENVHLNLIRLNPITDGPFAGS--QNVTGFAKKLKTGGINCTIRRRIGKNIDAACGQLR 367
Query: 367 SLSKRI 372
++
Sbjct: 368 HRQEQA 373
>gi|24213541|ref|NP_711022.1| ribosomal RNA large subunit methyltransferase N [Leptospira
interrogans serovar Lai str. 56601]
gi|81589793|sp|Q8F7V1|RLMN_LEPIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|24194325|gb|AAN48040.1| predicted Fe-S-cluster redox enzyme [Leptospira interrogans serovar
Lai str. 56601]
Length = 353
Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats.
Identities = 120/371 (32%), Positives = 180/371 (48%), Gaps = 29/371 (7%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N +K L G +EL E ++ +G R QI+ +YV + + S+ +
Sbjct: 9 NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVS 119
L + S+ + ++V + S DGT+K+ + G E E V+IP + R T+C+S
Sbjct: 65 EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQ+GC+L C FC T + NL A EI+ Q+L ++GD K
Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
+N+V MGMGEPL N+ NV ++ SI D + +RIT+STSG V I R +
Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYN 224
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
AISL+ R ++ I K+ L L+ A + + RITFEYVM+ G+N +
Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDFTRELKR-RITFEYVMIPGVNMGFEN 283
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+KI K + KIN+IP N + +++I F ++ +G R G DI
Sbjct: 284 ANKLVKIAKSLDCKINVIPLN-TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPGKDI 342
Query: 359 LAACGQLKSLS 369
ACG L S S
Sbjct: 343 FGACGMLASKS 353
>gi|284045197|ref|YP_003395537.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
gi|283949418|gb|ADB52162.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
Length = 329
Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats.
Identities = 120/363 (33%), Positives = 177/363 (48%), Gaps = 43/363 (11%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
L+ + + R R Q+W+W RG ++ M+++ +R L +
Sbjct: 4 DLLDRTLAD-----------EDQPRFRAKQVWEWT-ARGAAGYEEMTNLPAALRATLAER 51
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSL 126
+ E + DGT K L +E V + K R +LC+SSQ GC L
Sbjct: 52 VPFSSLTLQHEAHASDGTVKALFSTH-----DGRAVEAVLMRYKDGRRSLCLSSQSGCPL 106
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
TC+FC TGT K RNLTA EIL Q L R + ++ + V MG
Sbjct: 107 TCTFCATGTMKFGRNLTASEILDQALHFRRI-------------------EEVDHCVFMG 147
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
MGEP+ N D+V + + + RR +ST G++P I R+ + E+ + LA+SLHA
Sbjct: 148 MGEPMMNLDHVLAACRALPS---IGITHRRTAISTVGWIPGIERLTDSEMPIRLALSLHA 204
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
LR+ ++P+N +YPL ++ ACR + + EYVML G+ND AL L ++
Sbjct: 205 PDEALRSQIMPVNDRYPLRDVLRACRDFYEKKRRM-VFIEYVMLGGVNDGYAQALQLARL 263
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+ K+NLIP+NP Y S ++ I TF ++ G S+ +R RG DI AACGQL
Sbjct: 264 LEPWMFKVNLIPYNPTD-SIYDGSSREAIETFRAVLEEHGISATVRLTRGRDIDAACGQL 322
Query: 366 KSL 368
Sbjct: 323 AVK 325
>gi|45658616|ref|YP_002702.1| ribosomal RNA large subunit methyltransferase N [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|81406814|sp|Q72NP7|RLMN_LEPIC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|45601860|gb|AAS71339.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 353
Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats.
Identities = 121/371 (32%), Positives = 181/371 (48%), Gaps = 29/371 (7%)
Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
N +K L G +EL E ++ +G R QI+ +YV + + S+ +
Sbjct: 9 NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVS 119
L + S+ + ++V + S DGT+K+ + G E E V+IP + R T+C+S
Sbjct: 65 EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQ+GC+L C FC T + NL A EI+ Q+L ++GD K
Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
+N+V MGMGEPL N+ NV ++ SI D L+ +RIT+STSG V I R +
Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYN 224
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
AISL+ R ++ I K+ L L+ A + + RITFEYVM+ G+N +
Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDFTRELKR-RITFEYVMIPGVNMGFEN 283
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L+KI K + KIN+IP N + +++I F ++ +G R G DI
Sbjct: 284 ANKLVKIAKSLDCKINVIPLN-TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPGKDI 342
Query: 359 LAACGQLKSLS 369
ACG L S S
Sbjct: 343 FGACGMLASKS 353
>gi|116515112|ref|YP_802741.1| YfgB [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|122285492|sp|Q057Q1|RLMN_BUCCC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|116256966|gb|ABJ90648.1| putative pyruvate formate lyase activating enzyme [Buchnera
aphidicola str. Cc (Cinara cedri)]
Length = 359
Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats.
Identities = 143/363 (39%), Positives = 205/363 (56%), Gaps = 20/363 (5%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ +++ +KIG + R QI WIY + F MS+++ ++ L
Sbjct: 13 KKINLLNFNLKKMINFFIKIG----EKKFRAIQITDWIYKKQNIKFDQMSNLNFFLKKKL 68
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
N I P+ + + S DGT KW IET+YIPEK R TLC+SSQVGC
Sbjct: 69 NNIAVIKIPKCIKKIKSIDGTIKWKFLC------NKEFIETIYIPEKKRATLCISSQVGC 122
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
L C+FC TG RNL EI+ Q+ + + I NIVM
Sbjct: 123 QLKCNFCATGQLGYKRNLLVSEIIGQIWYV--------INKIKKYNSKKKNFPPIKNIVM 174
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N N+ ++ I + G +FSK ++TLSTSG VP I ++ +I + LA+SLH
Sbjct: 175 MGMGEPLLNLKNIIIAIDIILGNYGFNFSKNKVTLSTSGIVPAINKIAGKIDISLAVSLH 234
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
A +N +RN ++PIN+ Y +++L+++ ++Y S+A + +T EYVML IND A+ L
Sbjct: 235 ASNNTIRNKIMPINKIYNIQLLLESIKNYLKKSSANKGIVTIEYVMLSKINDFQHHAIEL 294
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+LK IP KINLIP+NP Y+CS K+I+ F+ +++ G+ IR RG DI AAC
Sbjct: 295 SNLLKNIPCKINLIPWNPIKNSSYICSSSKNIINFANFLRKKGFIVIIRKNRGSDIQAAC 354
Query: 363 GQL 365
GQL
Sbjct: 355 GQL 357
>gi|168702822|ref|ZP_02735099.1| hypothetical protein GobsU_25056 [Gemmata obscuriglobus UQM 2246]
Length = 355
Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 188/367 (51%), Gaps = 19/367 (5%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M E L L + G P MR +QI K I F+ MSD+ + +R L F +
Sbjct: 1 MPAETLRAWLTERGQP----PMRVNQICKQILANRATAFEDMSDLPKGLRADLAGAFRVF 56
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
+ + D T K++LR IE V I + R T C+S+QVGC + C FC
Sbjct: 57 SMSVERHFAASDDTHKFVLRL-----ADGRMIEAVLIQDDGRATACISTQVGCGMGCVFC 111
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
+G +VRNLTA E++ Q++L R+L P ++++IV+MGMGEPL
Sbjct: 112 ASGLNGVVRNLTAGEMVEQLVLLRNLTD--------ANSTNPERAPRLTHIVVMGMGEPL 163
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250
N DN+ +L++A D GL R +T+ST G I ++ E LA+SLHA +++L
Sbjct: 164 ANLDNLLDALAVAGDKNGLGIGARHVTISTVGLPAKIRKLAESGKQYHLAVSLHAPNDEL 223
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
R +VP N K ++ ++ A + + + +T+EYV+L G+ND A L +L+G
Sbjct: 224 RTRIVPTNDKVGMDAILAAADEFYEKTGRQ-VTYEYVVLGGLNDQAPHARQLAGLLRGRQ 282
Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
A +NLIP+N G + D+ + ++R G S +R +G +I AACGQL+ ++
Sbjct: 283 AHVNLIPWNAVEGLAFKRPADADLQYLIDTLRRGGISVKVRKRKGAEIDAACGQLRRQAE 342
Query: 371 RIPKVPR 377
R
Sbjct: 343 AALGAER 349
>gi|108798974|ref|YP_639171.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium sp.
MCS]
gi|119868089|ref|YP_938041.1| radical SAM protein [Mycobacterium sp. KMS]
gi|126434574|ref|YP_001070265.1| radical SAM protein [Mycobacterium sp. JLS]
gi|122977121|sp|Q1BAG9|RLMN_MYCSS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829816|sp|A3PXZ7|RLMN_MYCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829817|sp|A1UEJ3|RLMN_MYCSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|108769393|gb|ABG08115.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. MCS]
gi|119694178|gb|ABL91251.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. KMS]
gi|126234374|gb|ABN97774.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. JLS]
Length = 374
Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats.
Identities = 121/352 (34%), Positives = 178/352 (50%), Gaps = 19/352 (5%)
Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC 82
++G+P R Q+ Y R D Q M+D+ VR + + V E +
Sbjct: 35 ELGLPA----FRAKQLATQYYGRLTADPQQMTDLPAAVREQVAEALFPDLLTAVREIETD 90
Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
G + +L E+V + R T+C+SSQ GC + C FC TG L RNL
Sbjct: 91 AGETRKVL----WRAVDGTTFESVLMRYSDRNTVCISSQAGCGMACPFCATGQGGLQRNL 146
Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
+ EIL QV A L D D EG+ + G ++SNIV MGMGEPL N++ V ++
Sbjct: 147 STAEILEQVRAAAVELRD----RDGEGIAPAARGGRLSNIVFMGMGEPLANYNRVIAAVR 202
Query: 203 IA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259
G S R +T+ST G P I ++ +E V LA+SLHA ++LR+ LVP+N
Sbjct: 203 RIVAPPPDGFGISARSVTVSTVGLAPAIRKLADERLNVTLALSLHAPDDELRDTLVPVNN 262
Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLI 316
++ + +DA R+Y ++ RR++ EY +++ +ND P A L K L G +N+I
Sbjct: 263 RWKVSEALDAARYYADVT-GRRVSIEYALIRDVNDQPWRADLLGKRLHGALGPLVHVNVI 321
Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
P NP PG E+ S + F ++ G S +R RG +I AACGQL +
Sbjct: 322 PLNPTPGSEWDASPKPAEREFVRRVRERGVSCTVRDTRGREIAAACGQLAAE 373
>gi|87301290|ref|ZP_01084131.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701]
gi|87284258|gb|EAQ76211.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701]
Length = 362
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 119/363 (32%), Positives = 175/363 (48%), Gaps = 42/363 (11%)
Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS------IIY 72
+ G P R Q+ WIY +G R +S + + R L +
Sbjct: 23 AWAVSQGQPA----FRGRQLHDWIYAKGARRLADISVLPKAWRESLTAEADPAGSDALGR 78
Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
+ ++ DGT K LL + +ETV IP + R T+CVSSQVGC + C FC
Sbjct: 79 SRELQRSVASDGTTKLLL-----GTADGLSLETVGIPSRDRLTVCVSSQVGCPMACRFCA 133
Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
TG L R+L EI+ QVL R ++ R+ S++V MGMGEPL
Sbjct: 134 TGKGGLQRSLAVHEIVDQVLCVREVM-----------------ERRPSHVVFMGMGEPLL 176
Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLAISLHA 245
D+V ++ +G++ +R+IT+ST G + + E LA+SLHA
Sbjct: 177 TIDSVLGAIHCLCTDLGMA--QRQITVSTVGVPSTLPSLAELALERLGRAQFTLAVSLHA 234
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
LR L+P YPLE L+D CR Y ++ RR++FEY++L G+ND PR A L +
Sbjct: 235 PDQGLREQLIPTAHAYPLEALLDDCRRYVEIT-GRRVSFEYILLGGLNDHPRQAAALAAL 293
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+G + +NLIP+NP ++ + + F + + +R RGLD AACGQL
Sbjct: 294 LRGFQSHVNLIPYNPIEEEDFQRPSPERVEAFRRALLERHVAVSVRASRGLDEDAACGQL 353
Query: 366 KSL 368
+
Sbjct: 354 RRR 356
>gi|290968497|ref|ZP_06560036.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str.
28L]
gi|290781493|gb|EFD94082.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str.
28L]
Length = 345
Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats.
Identities = 106/369 (28%), Positives = 177/369 (47%), Gaps = 27/369 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
SL+ EL++ L + R QI+ ++Y + I ++ M + ++ R L
Sbjct: 3 SLLDFTLPELQQFLEAH----SIKKFRAKQIFHYVYKQNITVWEDMVQLPKQDRQKLQNL 58
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I P IV S +G LL + +ETV + ++C+SSQVGC++
Sbjct: 59 LEIYIPPIVSRLDSANGETVKLL----VQLADGQTVETVLMRHNYGNSICLSSQVGCAVN 114
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC + VRNLT E+ Q+L R + + ++V+MG
Sbjct: 115 CLFCASAKNGFVRNLTMGEMQAQLLAFRRYVTTD-----------------LHSVVLMGT 157
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
GEPL N+DNV + L ++ R +T+ST+G VP I ++ +E I V LA+SLHA
Sbjct: 158 GEPLLNYDNVLRFLRTIHEAYSFYLGYRNMTISTAGIVPQIYKLAQEGIPVNLAVSLHAS 217
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+++LR ++PI Y E ++ A HY ++ R++TFEY++++ + +P A L +
Sbjct: 218 NHELRRKIMPIADTYAWEDIVRAAFHYFAVT-GRKVTFEYILIRDLTCTPACAEELASRM 276
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
IN IP N +++ F + +K+ S +R G +I AACGQL+
Sbjct: 277 AHKNVLINAIPINDNYDVGLRRPTLREMQAFVKILKKHHISVTLRREMGSEIQAACGQLR 336
Query: 367 SLSKRIPKV 375
+ + +
Sbjct: 337 IQREAVDRK 345
>gi|255085148|ref|XP_002505005.1| predicted protein [Micromonas sp. RCC299]
gi|226520274|gb|ACO66263.1| predicted protein [Micromonas sp. RCC299]
Length = 375
Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats.
Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 31/378 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV-RGIRDFQGMSDISQEVR-HLLN 65
+L+GM EL+ + G+P + R Q+ +Y + ++ + + + R LL+
Sbjct: 23 NLLGMTLPELKTFAEEAGLP----KFRGKQLRDHLYGVKPAKNIDDLVTLPKAARRQLLD 78
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
S+ + S DGT K LLR + V I + R T CVSSQVGC
Sbjct: 79 AGVSVGRSVVHHVAGSPDGTTKLLLRLHDDRVVETVGIPA-HEAGHRRLTACVSSQVGCP 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG RNL EI+ QV+ G+ ++++IV M
Sbjct: 138 MRCTFCATGKGGFARNLATHEIVDQVVSLEEHFGE-----------------RVTHIVFM 180
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
GMGEPL N NV ++ + +G+ R IT+ST G I R+ ++ LAISLH
Sbjct: 181 GMGEPLLNVPNVLRAHEALNKEVGIG--SRHITISTVGVRGAIERLARAKLQSTLAISLH 238
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +LR L+P + YP++ L++ + Y ++ RR+TFEY +L G+NDS + A L +
Sbjct: 239 APNQELRERLIPSAKAYPMQELLNDAQQYF-IATGRRVTFEYTLLAGVNDSIQQAEELGR 297
Query: 305 IL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+L + + +N+IP+NP + + I+ F +++ + IR RGL+ AA
Sbjct: 298 LLYKNKLASHVNIIPYNPVDDAPDFKRPGRASILNFRNTLEQMNVPASIRQSRGLEAAAA 357
Query: 362 CGQLKSLSKRIPKVPRQE 379
CGQL++ ++ +
Sbjct: 358 CGQLRNAYQKNALQAEEA 375
>gi|315187026|gb|EFU20783.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6578]
Length = 354
Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats.
Identities = 116/385 (30%), Positives = 183/385 (47%), Gaps = 35/385 (9%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M ++ SL G++ EE+ E L R R QI++WI+ + I F GM+ + +
Sbjct: 1 MRTRERLSLSGLLPEEISELL------PMEPRYRAIQIFEWIHAKRILSFSGMTTLPSRL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L+ + + I ++ R G + V K R T C+S+
Sbjct: 55 REELSSSYHVRGATIHALVQDPGDE---TIKAQVRLQDGQIVEAVVLTDGKGRKTACLST 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C+FC TG RNLT EI+ Q L+ + G +S
Sbjct: 112 QAGCAMGCAFCKTGQLGFSRNLTPGEIVDQWLILQDTAG------------------PLS 153
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
+IV MGMGEPL N N++K++SI S G S RRIT+ST G VP I + EE V L
Sbjct: 154 HIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAEEGPHVRL 213
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A SL + ++R L+P+ ++PL+ + +A Y + RIT E V ++G+ +P ++
Sbjct: 214 AFSLTSARPEVRKQLMPVEARHPLDHVKEALLKYQAATGK-RITLEVVAIEGLTCTPEES 272
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ +G+ +N+IP+NP PG Y + +F + + + +R +G I
Sbjct: 273 RAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRYRKGQHIH 332
Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL + PR+ + G
Sbjct: 333 GACGQLGVV------TPRKTHREAG 351
>gi|307638089|gb|ADN80539.1| Ribosomal RNA large subunit methyl transferase N [Helicobacter
pylori 908]
gi|325996690|gb|ADZ52095.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori 2018]
gi|325998282|gb|ADZ50490.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori 2017]
Length = 357
Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats.
Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 37/380 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KTSIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET + E +
Sbjct: 54 EQEFTLRTIEIAHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKH 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K+ NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKVLNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLSKRIP 373
+ LDI AACGQL+ +
Sbjct: 337 KALDIEAACGQLREKKLQQK 356
>gi|317506353|ref|ZP_07964165.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974]
gi|316255363|gb|EFV14621.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974]
Length = 369
Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 168/362 (46%), Gaps = 26/362 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ L + EEL EA+ +G R Q+ + Y R + M+DI R
Sbjct: 15 MPPRHLADLAAEELREAVAGLG----EKPFRAQQLARHYYSRLTAEPGVMTDIPAASRGK 70
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L T K L R +E+V + R TLCVSSQ
Sbjct: 71 LADALLPSLITPARTMGCDGGETVKTLWRLH-----DGALVESVLMGYADRVTLCVSSQA 125
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RNL+ EI+ QV LA + D R +SN+
Sbjct: 126 GCGMACPFCATGQGGLTRNLSTAEIVEQVRLAAAAARDGKVAGGP---------RNLSNV 176
Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
V MGMGEPL N++ V ++ GL S+R + +ST G VP I R+ E V L
Sbjct: 177 VFMGMGEPLANYNRVLAAVRRITSPAPDGLGLSQRSVVVSTVGLVPAIKRLAGEGLSVTL 236
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ LVP+N ++P+ ++ A + Y + RR++ EY +++ +ND P A
Sbjct: 237 AVSLHAPDDELRDTLVPVNTRWPVAEVLAAAQGYARQT-GRRVSVEYALIREVNDQPWRA 295
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L +L A +NLIP NP PG ++ S + F ++ G S +R RG
Sbjct: 296 DLLGGLLHQALGPLAHVNLIPLNPTPGSKWDASSPEAQREFVRRVRAKGVSCTVRDTRGQ 355
Query: 357 DI 358
+I
Sbjct: 356 EI 357
>gi|281356702|ref|ZP_06243193.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548]
gi|281316829|gb|EFB00852.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548]
Length = 344
Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 182/368 (49%), Gaps = 29/368 (7%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + L+G L E +P R +QI W+Y +GI + + M+++ VR L
Sbjct: 1 MSRPFLVGTSPAVLREWAKSHDLPA----FRGTQIADWVYKKGIVEPERMNNLPLPVREL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ F + + S DGT K LL IE V IP + R T C+S+QVG
Sbjct: 57 IGNEFLAPGTAVTETAGSGDGTEKLLLTLQ-----DGETIEMVLIPAEERLTFCLSTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC +G L+RNL A EIL + LL GR+ N+V
Sbjct: 112 CPVQCRFCASGRDGLIRNLAAGEILEEFLL-----------------GCSRAGRRPDNLV 154
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
MG+GE L NF + +L + S G S RRIT+STSG+VP + + E E LAIS
Sbjct: 155 FMGIGEGLLNFRELAATLEVLSSPEGFGMSPRRITVSTSGYVPGMLKFAELEREFTLAIS 214
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA ++ R+ L+P +YP+ ++ A Y + +T EY +L+G ND+P A L
Sbjct: 215 LHAPDDETRSRLIPDKLRYPVAEIMAAADLYLRKAGRM-VTLEYTLLEGFNDTPPHARAL 273
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ K+NLIP+N G E+ ++ I F E + +G +R RG +AAC
Sbjct: 274 GALAVRHRCKVNLIPYNST-GGEFRRPSRQAIREFEETVAAAGAHVTVRVERGAKSVAAC 332
Query: 363 GQLKSLSK 370
GQL++ +K
Sbjct: 333 GQLRTRAK 340
>gi|145340644|ref|XP_001415431.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575654|gb|ABO93723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 340
Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats.
Identities = 113/348 (32%), Positives = 173/348 (49%), Gaps = 28/348 (8%)
Query: 31 VRMRTSQIWKWIYVRG---IRDFQGMSDISQEVRHLLN-QHFSIIYPEIVDEKISCDGTR 86
R QI +Y R + +S+++R L + + + DGT
Sbjct: 2 PAFRGKQIADHLYAPNGASARSVDDFTTLSKKLREELKSANVRVGRSRRHHVAAASDGTA 61
Query: 87 KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
K LLR + V I K+R T CVSSQVGC + C+FC TG RNL E
Sbjct: 62 KLLLRLDDDRVVETVGIPAT-ENGKNRLTACVSSQVGCPMRCTFCATGKGGFARNLAPHE 120
Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
I+ QVL G+++SN+V MGMGEPL N NV K+ +
Sbjct: 121 IVDQVLALEEYF-----------------GQRVSNVVFMGMGEPLLNVPNVLKAHEALNK 163
Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
+G+ R IT+ST G +I ++ ++ +LA+SLHA + +LR ++P + YP+E
Sbjct: 164 EIGIG--ARHITISTVGVRGSIEKLAHAQLQSVLAVSLHAPNQELRETIIPSAKVYPMED 221
Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPG 323
L+ C Y ++ RR+TFEY +L GIND P A L ++L + + + +NLIP+NP
Sbjct: 222 LLQDCEQYF-VATGRRVTFEYTLLGGINDQPEHAKELGRLLYARNLASHVNLIPYNPVDD 280
Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
+Y + + F + ++ + IR RGL+ AACGQL++ ++
Sbjct: 281 SDYQRPSRATVYAFRDILEGLNVPASIRQTRGLEAAAACGQLRNAFQK 328
>gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 356
Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats.
Identities = 124/373 (33%), Positives = 188/373 (50%), Gaps = 21/373 (5%)
Query: 4 LKKE-SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++K +L+ + E + L+ IG I + ++ S + + ++H
Sbjct: 1 MEKTVNLLDLSPEGIASFLVSIGEKPV---FTGK-IIRHLFECRNTIIDEPSYLPESLKH 56
Query: 63 LLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L Q E+++E S K L +E K R T+CVSSQ
Sbjct: 57 KLRQISGHAALEVLEESKSVDGKNIKTLFGLDDGNTIESTAMEFGGSAGKIRRTVCVSSQ 116
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C +C TG RNL+ E++ QVL R G ++N
Sbjct: 117 VGCMIGCPYCATGMNGFHRNLSPGEMIEQVLYYRGETGRVGRNS-------------LTN 163
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+V MGMGEPL N+DNV ++S+ + G+ F R+IT+STSG VP I R+ E LA
Sbjct: 164 VVFMGMGEPLLNYDNVVTAVSLLNSHHGMGFGARQITISTSGIVPGILRLAREDLYCQLA 223
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+S+ + +++LRN+LVP+NRKYPL LI+ACR Y L+ R++ EYV+ +G+NDS +DA
Sbjct: 224 VSIQSATDELRNLLVPVNRKYPLAHLIEACREYSELT-RRKVFIEYVLFEGVNDSIQDAE 282
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L K+L+ + INLI N + + +V F + G+ + +R RG DI A
Sbjct: 283 GLAKLLEPLDCSINLIIVNNSGIGTFRPTSYDTVVAFQRLLVSKGFRTMLRLSRGTDIEA 342
Query: 361 ACGQLKSLSKRIP 373
CGQL++ RI
Sbjct: 343 GCGQLRNRRLRIT 355
>gi|303273710|ref|XP_003056208.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462292|gb|EEH59584.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 358
Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats.
Identities = 122/374 (32%), Positives = 185/374 (49%), Gaps = 31/374 (8%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG-IRDFQGMSDISQEVRH- 62
K+ +L+G+ EL+ IG+P R Q+ IY +R + + + R
Sbjct: 4 KRFNLLGLTLSELKRFSADIGLPA----YRGKQLRDHIYAGPPVRYIDDLVSLPKATRAA 59
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL I + + DG K LLR + V I + K R T CVSSQV
Sbjct: 60 LLAADVHIGRSSVHHVVVDSDGVVKLLLRLGDDKVIETVGIPS-LERGKDRLTACVSSQV 118
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C+FC TG RNL EI+ QVL G++++N+
Sbjct: 119 GCPMRCTFCATGKGGFTRNLAPHEIVDQVLSLEEHF-----------------GKRVTNV 161
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
V MGMGEPL N NV ++ + + +G+ R IT+ST G ++ + + LA+
Sbjct: 162 VFMGMGEPLLNTPNVLRAYTALNTEIGIG--ARHITISTVGVRGSLQMLAGARLQSTLAV 219
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + LR +L+P + YPL L++ C Y ++ RR+TFEY +L GINDS A+
Sbjct: 220 SLHAPNQSLREVLIPSAKSYPLGELLNDCEQYF-IATGRRVTFEYTLLAGINDSSEQAVE 278
Query: 302 LIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L ++L K + + +NLIP+NP ++ D+ + F ++ + IR RGL+
Sbjct: 279 LAELLHKKKLASHVNLIPYNPVHDAPDFARPDRATVFKFKNILEEMQVPASIRQSRGLEA 338
Query: 359 LAACGQLKSLSKRI 372
AACGQL+S ++I
Sbjct: 339 AAACGQLRSSFQKI 352
>gi|218961533|ref|YP_001741308.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus
Cloacamonas acidaminovorans]
gi|167730190|emb|CAO81102.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus
Cloacamonas acidaminovorans]
Length = 350
Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats.
Identities = 117/360 (32%), Positives = 183/360 (50%), Gaps = 22/360 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ +M E+L ++++ R Q+ W+Y + + + M+++ +E R L
Sbjct: 3 TNIFSLMPEDLAKSIISR--QPDLPEYRIKQVLSWLYKFYLNEPEKMTNLPEEFRAFLKT 60
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++S PEI + +S DG K+ L IE+V IP + + TLC+S+QVGC+
Sbjct: 61 NYSFFLPEIESKLVSQDGAVKYRLLLE-----DGKIIESVLIPAEKKNTLCLSTQVGCAR 115
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L+RNL +EI+ QV++A L + K++N+V+MG
Sbjct: 116 NCKFCATGKMGLIRNLATQEIIGQVIIASKELKNSGTA-------------KLTNLVLMG 162
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
MGEP+ N NV +L I + G SFS RRIT+ST G VP I + + I LA+SL +
Sbjct: 163 MGEPMDNLKNVLMALQILQSNAGFSFSPRRITVSTCGVVPGIIALADSGIKAKLALSLTS 222
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
R L+P++ +Y L L A +Y + + RIT EY+++ N D L K
Sbjct: 223 AIQSKRRKLMPVSDQYNLIQLKQALLYYLRKT-SFRITIEYILIPNFNMDSEDLAALRKF 281
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ KIN IP+NP + + +I F + ++ + +R RG DI ACGQL
Sbjct: 282 TGDLSCKINFIPYNPGRNSPFRAPTETEIKDFMQRAQKLPQAITLRKSRGADIFGACGQL 341
>gi|304440677|ref|ZP_07400561.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304370864|gb|EFM24486.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 342
Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 112/370 (30%), Positives = 176/370 (47%), Gaps = 34/370 (9%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ + EE++ + +IG + R Q++ + D S++ ++++ L
Sbjct: 3 INDLTFEEMKSYIEEIG----EKKFRAQQLFTFFNKNKKWDLNSSSNLPKDLKSL----- 53
Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ +I +E S D T K+L IE V + + + C+S+QVGC +
Sbjct: 54 PVREIKIFEEYHSKIDETVKFLFELN-----DGNLIEGVLLKYEHGYSQCISTQVGCRMG 108
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC + +RNLT E+ Q+ L + L G ISNIV+MG
Sbjct: 109 CSFCASTKGGRIRNLTPSEMAGQIYLVENKL-----------------GINISNIVLMGS 151
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246
GEPL N++NV K I D G + S R IT+S+ G VP I + + + LAISLH+
Sbjct: 152 GEPLDNYENVIKFFDIIHDENGKNLSNRSITISSCGIVPRIYDLEKLKKPINLAISLHSP 211
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ R ++PI +Y +E ++ A ++Y + RIT EY ++K +ND DA LI+I
Sbjct: 212 FDEDRKKIMPITNRYSIEEVLAASKYYSEGT-GTRITLEYTLIKDVNDREIDADELIRIT 270
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K I +NLIP NP + K F + + G ++ IR G DI A+CGQL+
Sbjct: 271 KDIKVHVNLIPLNPIKEYNKGKTSPKGAKKFQNMLLKGGINATIRRELGSDISASCGQLR 330
Query: 367 SLSKRIPKVP 376
Sbjct: 331 RKRLENENSK 340
>gi|301166181|emb|CBW25756.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 352
Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 134/366 (36%), Positives = 199/366 (54%), Gaps = 25/366 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMS-DISQEVRHLL 64
K S + +EL +L + G+ S ++ W Y + + +IS+ + L
Sbjct: 10 KRSFYNLNYDELVTSLQEEGLGTSA----ASLLYNWHYKKKQSSP--CTHNISKATQKFL 63
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ +F PEI + IS D T K+L + +E+V IP ++ ++C+SSQVGC
Sbjct: 64 SDNFDFSLPEIDEVHISDDRTVKFLFKLHDSSK-----VESVLIPFHNKYSICLSSQVGC 118
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ CSFC+TGTQ L RNL EIL Q L A L + E +I NIV
Sbjct: 119 AMKCSFCFTGTQGLKRNLETSEILGQFLAAWRWLAENRPGE-----------ERILNIVF 167
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243
MG GEPL NFD VK++ I G S ++IT+STSG++P + R EEI V LA+SL
Sbjct: 168 MGQGEPLHNFDAVKRACEIFLSKNGASIGTQKITISTSGYLPGLKRWEEEIPGVNLALSL 227
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ + RN L+P+N+KY L ++ L + IT+EY+++K NDS DA +
Sbjct: 228 HSPFEEKRNELIPVNKKYSLPEVLKHIDS-ITLQKKQFITYEYLLIKDFNDSVEDARAVG 286
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG A IN+IPFNP+PG +Y ++++F I + +R +G D+LAACG
Sbjct: 287 ELLKGKEAYINIIPFNPFPGSKYKRPSDNEVLSFKSIIDEYKIPTLVRITKGDDVLAACG 346
Query: 364 QLKSLS 369
QL + S
Sbjct: 347 QLNTKS 352
>gi|261414747|ref|YP_003248430.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371203|gb|ACX73948.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327425|gb|ADL26626.1| 23S rRNA m2A2503 methyltransferase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 357
Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats.
Identities = 112/365 (30%), Positives = 186/365 (50%), Gaps = 17/365 (4%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++ + +EL+ L + R QI KW++ + +R + M +IS +R + +
Sbjct: 5 RNIKTLTTDELKAWLRDV----DEKPYRADQIQKWLFCQQVRSYDEMVNISPALREKMAK 60
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F++ + +S DGT KWL IETV IP R ++CVS+QVGC++
Sbjct: 61 QFTLCGLKEDQRSVSVDGTVKWLFETE-----DGHHIETVMIPANGRYSVCVSTQVGCAM 115
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC T RNL A EIL +++ L D + G+ ++NI+ MG
Sbjct: 116 NCAFCRTAKMGFTRNLEAGEILEEIINVNWYLKDNGFMNEEGGVAQ------VTNIIFMG 169
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N +NV + + + +R+T+STSG VP I + + LA+SL++
Sbjct: 170 MGEPLNNLENVHRVCCTLHNQKLFNMGAKRMTVSTSGVVPKIKELVDRNTPCCLAVSLNS 229
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N+ R+ ++P+N+ +P+E L++A Y ++ +TFE+V+++ I +P+ A LI+I
Sbjct: 230 TNNEYRSSVMPVNKTWPIEKLLEAVDEYIRRTDNY-VTFEFVLIQNITCTPKAAKELIRI 288
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
K+N I N +++ F ++ + IR PRG DILAACGQL
Sbjct: 289 CAPRRVKVNAIVLNDGDDPTLHAPTPEEVEDFLAAVRAAEIQITIRNPRGRDILAACGQL 348
Query: 366 KSLSK 370
+
Sbjct: 349 AYKKE 353
>gi|21674009|ref|NP_662074.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS]
gi|81791215|sp|Q8KD71|RLMN_CHLTE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|21647156|gb|AAM72416.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS]
Length = 374
Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats.
Identities = 119/373 (31%), Positives = 181/373 (48%), Gaps = 27/373 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ ++ + R+EL E L ++G P R +Q+ +W+Y F+ MS +S+++R L
Sbjct: 22 RLNIRRLGRKELTELLTRLGEPA----YRANQLHRWLYSNQALRFEEMSTLSKQLRQKLA 77
Query: 66 QHFSIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ I +V E + +E+V IP + R T C+SSQ+
Sbjct: 78 SEWIIHPASLVGTERETTDASLVTGNPTAKFLIKLEDNELVESVLIPSEERITACISSQI 137
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC L C+FC TG RNLTA EI QV L R ++NI
Sbjct: 138 GCPLRCTFCATGHMGFRRNLTASEITDQVFLLEK-------------EAQKRHWRGLTNI 184
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
V MGMGEPL N DNV +S+ ++ S S+R+IT+ST G + R+ LA
Sbjct: 185 VFMGMGEPLLNLDNVLESIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSGLKTKLA 244
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH+ +R ++PI L+ L A Y ++ ++ +T Y++L+GINDSP DA
Sbjct: 245 ISLHSADQLIRERMMPIAADITLDKLAKAINSYNSVT-SQPVTLVYMLLEGINDSPEDAR 303
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLC--SDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L++ K + KINLI +N ++ S K + F + + +G +R +G I
Sbjct: 304 KLVRFAKRVLCKINLIDYNSIVTLKFKPGCSSSKTM--FIQQLLDAGLLVTVRKSQGATI 361
Query: 359 LAACGQLKSLSKR 371
AACGQL + R
Sbjct: 362 NAACGQLATRPVR 374
>gi|325474464|gb|EGC77651.1| ribosomal RNA large subunit methyltransferase N [Treponema
denticola F0402]
Length = 347
Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats.
Identities = 121/370 (32%), Positives = 184/370 (49%), Gaps = 31/370 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L GM EE++ G+ + + R QI+ WI G+ F M+++S ++R L
Sbjct: 7 KTALSGMFPEEIQSFC---GLKE---KFRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
FS+ +I + DGT K + V + + R T CVS Q GC
Sbjct: 60 NDFSLFSTKIKEALKDKDGTIKLAVELYDGS----VIETVLLTDKAKRKTACVSCQAGCP 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG +RNL+A EI+ Q L G + NIV M
Sbjct: 116 MKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAGS------------------LDNIVFM 157
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GMGEP+ N + K+++I + G + SKRRIT+STSG I + ++ V LA+SL
Sbjct: 158 GMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCNGIYEMADKGPEVRLAVSLT 217
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
LR+ L+PIN+ L+ L A +++ SN R+T E ++KG+N + A +I+
Sbjct: 218 TADETLRSELMPINKTNSLDELKQAIKYFNSKSNK-RVTLELALMKGLNTDKKAAQEVIE 276
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
KG+ INLIP+NP G + + ++ TF +K++G + R RG I ACGQ
Sbjct: 277 FAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACGQ 336
Query: 365 LKSLSKRIPK 374
L S + R +
Sbjct: 337 LGSTATRSNR 346
>gi|312898699|ref|ZP_07758089.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359]
gi|310620618|gb|EFQ04188.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359]
Length = 341
Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats.
Identities = 111/370 (30%), Positives = 184/370 (49%), Gaps = 34/370 (9%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MN + + + +L++ L++ GI + R QI+ +IY I + M + ++
Sbjct: 1 MN-----DIFSITKGQLQDILVEAGI----KKFRADQIFHYIYKENIWSWNEMVLLPKKD 51
Query: 61 RHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R +L I PE+ D ++S T K LLR +ETV + ++C+S
Sbjct: 52 REILKGLLPIYIPEVADRQVSEDKETVKLLLRLQ-----DGQTVETVLMKHDYGNSVCLS 106
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC++ C+FC + VRNLT E+ Q++ R + ++
Sbjct: 107 SQVGCAVNCAFCASAKNGFVRNLTIGEMTAQLMAFRKYVTS-----------------EL 149
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
++V+MG GEPL N+DNV + + + L R ITLSTSG VP + R+ EE I +
Sbjct: 150 HSVVLMGTGEPLLNYDNVLAFIRLIHEKDTLYLGYRNITLSTSGIVPAVYRLAEEGIPLN 209
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA ++ +R ++PI ++ + ++ A + Y + R++TFEY+++K +N S
Sbjct: 210 LAVSLHAPNDRIRKKIMPIAERFDFDSVVQAAQTYFEKT-GRKVTFEYILIKDVNISDAC 268
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
A L ++ +NLIP N + F +KR G ++ +R G +I
Sbjct: 269 ASQLAQLFSHKNVLLNLIPINDNYDVGLYRPSATESERFLTYLKRKGVNATLRREMGSNI 328
Query: 359 LAACGQLKSL 368
AACGQL+
Sbjct: 329 QAACGQLRIK 338
>gi|114776700|ref|ZP_01451743.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
gi|114552786|gb|EAU55217.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
Length = 357
Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats.
Identities = 133/377 (35%), Positives = 205/377 (54%), Gaps = 27/377 (7%)
Query: 3 FLKKESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ L GM ++L G+ P R+R + I++ D D+ +R
Sbjct: 1 MMSPALLNGMNHDQLLALCGAAGVSPAHADRLRAA-IFRHY--GSDTDINNTPDLPLRLR 57
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L +H +++ P DGTRK LL + E+ETV IP R T C+S+Q
Sbjct: 58 SYLAEHTALLQPASTATSEGEDGTRKLLL-----AMADGREVETVLIPGNGRLTQCISTQ 112
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC++ C+FC T T L RNLTA E++ +V + + GR++ N
Sbjct: 113 VGCAVGCTFCLTATAGLTRNLTAAEMVAEVTAGQRI-----------------SGRQVRN 155
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240
+V+MGMGEPL N+D V + +A+D G++FS R+TLSTSG VP + R+ +E+ LA
Sbjct: 156 LVLMGMGEPLHNYDEVAHFVRLATDPKGMAFSPNRVTLSTSGLVPAMQRMIRDELPCNLA 215
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SL+A ++ +R+ ++PINRKYP+ ML+D R Y + +R+ EYV+L GINDS DA+
Sbjct: 216 VSLNATNDAVRDTIMPINRKYPIAMLLDTVREYIRVRGNKRVLIEYVLLDGINDSQADAI 275
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +++ G+ +NL+PFN +PG + + F + +G + +R +G DI A
Sbjct: 276 RLCELMAGMGCTVNLLPFNAYPGLPFQRPADAAVSAFRAILVEAGIITVVRESKGRDIAA 335
Query: 361 ACGQLKSLSKRIPKVPR 377
ACGQLK+ + K R
Sbjct: 336 ACGQLKTEVVQRRKASR 352
>gi|42527577|ref|NP_972675.1| radical SAM protein [Treponema denticola ATCC 35405]
gi|81570188|sp|Q73KZ3|RLMN_TREDE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|41818162|gb|AAS12586.1| radical SAM enzyme, Cfr family [Treponema denticola ATCC 35405]
Length = 347
Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 120/370 (32%), Positives = 183/370 (49%), Gaps = 31/370 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L GM EE++ G+ + + R QI+ WI G+ F M+++S ++R L
Sbjct: 7 KTALSGMFPEEIQSFC---GLKE---KFRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
FS+ +I + DGT K + V + + R T CVS Q GC
Sbjct: 60 NDFSLFSTKIKEALKDKDGTIKLAVELYDGS----VIETVLLTDKAKRKTACVSCQAGCP 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG +RNL+A EI+ Q L G + NIV M
Sbjct: 116 MKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAGS------------------LDNIVFM 157
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GMGEP+ N + K+++I + G + SKRRIT+STSG I + ++ V LA+SL
Sbjct: 158 GMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCKGIYEMADKGPEVRLAVSLT 217
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
LR+ L+PI + L+ L A +++ SN R+T E ++KG+N + A +I+
Sbjct: 218 TADETLRSELMPITKTNSLDELKQAIKYFNSKSNK-RVTLELALMKGLNTDKKAAQEVIE 276
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
KG+ INLIP+NP G + + ++ TF +K++G + R RG I ACGQ
Sbjct: 277 FAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACGQ 336
Query: 365 LKSLSKRIPK 374
L S + R +
Sbjct: 337 LGSTAARSNR 346
>gi|182412656|ref|YP_001817722.1| radical SAM protein [Opitutus terrae PB90-1]
gi|205829647|sp|B1ZVM5|RLMN2_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=23S rRNA m2A2503 methyltransferase 2
gi|177839870|gb|ACB74122.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
Length = 428
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 126/385 (32%), Positives = 187/385 (48%), Gaps = 31/385 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L R EL L + + H ++IW ++Y+ + F M+++ VR L
Sbjct: 53 TNLYDFTRAELRLWLSRRELNPVH----AARIWSYLYLDLVEGFGAMTELPARVRARLEA 108
Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ +I E S TRK+LL IETV + R T CVSSQVGC+
Sbjct: 109 EMCVGNLKIARETDSRDGFTRKYLLEL-----ADGAAIETVLMRFAGRATACVSSQVGCA 163
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG------------------DFPGCEDI 167
+ C FC TG R+LTA EI+ Q + L D
Sbjct: 164 MGCVFCATGQMGYTRHLTAGEIVAQAVHVARALRTAAFEKCHVMRDPSPGREAGEKSRDE 223
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
++ N+V+MGMGEPL N++ V +++ I D GL+ RITLST G VP
Sbjct: 224 ADRHRAPPTPRLRNLVLMGMGEPLHNYEAVMRAVDILRDDGGLALGAERITLSTVGVVPG 283
Query: 228 IARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
I R+ E LA+SLHA + R LVP+ +K+PL+ L+ ACR Y + RR+ +E+
Sbjct: 284 ILRLAAEKRPVHLAVSLHAADQEERAALVPVAKKWPLDELMAACRTYSE-TTGRRVFYEW 342
Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSG 345
+++G ND+ A + ++L+G+PA++NLIP NP G + + F E + +
Sbjct: 343 TLIEGRNDTAAHARAVGRLLRGLPAQVNLIPLNPTAGYDGTPGRTEAARRFQEILSREFA 402
Query: 346 YSSPIRTPRGLDILAACGQLKSLSK 370
S +R RG+DI A CGQL +
Sbjct: 403 LPSTVRQRRGIDIAAGCGQLAVAEQ 427
>gi|317182630|dbj|BAJ60414.1| hypothetical protein HPF57_1340 [Helicobacter pylori F57]
Length = 357
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 129/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRQSVDGSKKYLFKSLRDNHTFEAVFLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|317181108|dbj|BAJ58894.1| hypothetical protein HPF32_1312 [Helicobacter pylori F32]
Length = 357
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 129/376 (34%), Positives = 192/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVFLKMKDKKIDGETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G + + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSNFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|217034559|ref|ZP_03439968.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10]
gi|216942979|gb|EEC22462.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10]
Length = 357
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 129/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRQSVDGSKKYLFKSLRDNHTFEAVFLKMRDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|317010204|gb|ADU80784.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori India7]
Length = 357
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKEMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCAFCFTQKGGFVRNLQASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PLEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESAKMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|189485422|ref|YP_001956363.1| hypothetical protein TGRD_419 [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|205829922|sp|B1H070|RLMN_UNCTG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|170287381|dbj|BAG13902.1| conserved hypothetical protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 350
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 122/375 (32%), Positives = 198/375 (52%), Gaps = 37/375 (9%)
Query: 1 MNFLK---KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS 57
M LK K+ ++ + + A+ P R +QI +WIY + F+ ++I
Sbjct: 1 MQLLKQNYKKYILDLNDAQFNRAVK----PIIEQDYRINQIIEWIYAKKAVSFESFTNIP 56
Query: 58 QEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
+E+R+ L++ F + +IV ++ S D T ++ R + V++P + ++
Sbjct: 57 KELRNKLDEKFFLRTLKIVKKEKSLIDSTIRYTFRTADKKYFF-----AVFLPANGKNSV 111
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+SSQ+GC + C+FC +G KL RNL+ EI+ Q+L + +
Sbjct: 112 CISSQIGCPIMCAFCSSGKTKLARNLSRGEIIEQILQVENDTKE---------------- 155
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
KIS I+ MGMGEP+ NF+N+ L+ S KR IT+S+ G VP + ++ ++
Sbjct: 156 -KISGILFMGMGEPMLNFNNLISVLNSLLSSKEFGIGKRHITVSSVGIVPAVKKLADDNF 214
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
GV LA+SLHAV R LVP N + +E ++ A ++Y +N+ +T EYV++KGIN S
Sbjct: 215 GVRLALSLHAVDERQRKKLVPDNLGFSIEDILKAGKYYLKKTNSH-LTIEYVLVKGINIS 273
Query: 296 PRDALNLIKILKGIP-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
DA L ++LK ++NLIPFNP ++ D+K I F +K +G + +
Sbjct: 274 SADAHKLARLLKRCDLINSDVQVNLIPFNPVTDVQFQRPDKKSINKFKSILKLNGITVNV 333
Query: 351 RTPRGLDILAACGQL 365
R +G +I AACGQL
Sbjct: 334 RQSKGANINAACGQL 348
>gi|123969217|ref|YP_001010075.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
AS9601]
gi|205829808|sp|A2BT57|RLMN_PROMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123199327|gb|ABM70968.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
AS9601]
Length = 348
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 119/374 (31%), Positives = 181/374 (48%), Gaps = 39/374 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
++L+G +LE L G R QI+ WIY ++ + + + R L
Sbjct: 2 KNLLGSSINDLENVALDYG----QAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKL 57
Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
F + I + ++ DGT K LL IE V IP + R T C+SSQVG
Sbjct: 58 KVDGFKVSELVIKERNLANDGTLKLLLSTE-----DNESIECVGIPTEKRLTACLSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L A EIL Q+L + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEYEM-----------------NRKVTNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
MGMGEPL N D + S+ ++ S+R+IT+ST I+++ +
Sbjct: 156 FMGMGEPLLNIDELLLSIRSINND--FQISQRKITVSTVAIPKMISKLSAKSFQILSNCQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LAISLHA + R ++P + Y ++ +I+ C+ + + RR++FEY+ML G+ND
Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYEIKNIIEDCKTFVRET-GRRVSFEYLMLSGVNDKL 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L +LKG +NLI +N E+ + K++ F + +G + +R RGL
Sbjct: 273 EHACELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKNLQLFQSRLVNNGIAVSLRKSRGL 332
Query: 357 DILAACGQLKSLSK 370
D AACGQL+ +K
Sbjct: 333 DKNAACGQLRQNAK 346
>gi|291530132|emb|CBK95717.1| radical SAM enzyme, Cfr family [Eubacterium siraeum 70/3]
Length = 345
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 107/366 (29%), Positives = 182/366 (49%), Gaps = 35/366 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + E+ E+ L + G R +Q I++ IY R F M+ S +++ L
Sbjct: 2 TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRKATGFNEMTLTSADIKAL 54
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ + +I + S T K+L +ETV + +K ++C+S+Q G
Sbjct: 55 LSDKYFFGKLKIDEILQS-VDTSKYLFELS-----DGCRVETVLMRQKFGNSICISTQSG 108
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC +G + R+LTA E++ Q+L ISNI
Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILTVEKY-----------------QNITISNIT 151
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
+MG+GEP N+D + L I + G+ + IT+ST G + LA+S
Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIEIGTKHITVSTCGLCDKTELFAKRKEPCNLAVS 211
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++RN L+PINR+Y + +I++ ++Y +N ++ EY++L GINDS +A L
Sbjct: 212 LHAPDDEIRNRLMPINRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ +NLIP+NP P E+ S +++I F + +K++ + R G ++ AAC
Sbjct: 271 AALIGNARLFVNLIPYNPSPDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330
Query: 363 GQLKSL 368
GQL+S
Sbjct: 331 GQLRSD 336
>gi|307718490|ref|YP_003874022.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192]
gi|306532215|gb|ADN01749.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192]
Length = 354
Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats.
Identities = 114/385 (29%), Positives = 184/385 (47%), Gaps = 35/385 (9%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M ++ SL G++ E++ E L R R+ QI++WI+ + I F GM+ + +
Sbjct: 1 MRTRERFSLSGLLPEDISELLTA------EPRYRSLQIFEWIHAKRISSFTGMTTLPSRL 54
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R L+ + + + ++ R G + V K R T C+S+
Sbjct: 55 REELSSSYHVRGASLHALLQDPGDE---TIKAQVRLQDGQIVEAVVLTDGKGRKTACLST 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC++ C+FC TG RNLT EI+ Q L+ + G +S
Sbjct: 112 QAGCAMGCAFCNTGQLGFSRNLTPGEIVDQWLILQDTAG------------------PLS 153
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
+IV MGMGEPL N N++K++SI S G S RRIT+ST G VP I + EE V L
Sbjct: 154 HIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAEEGPHVRL 213
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A SL + ++R L+P+ ++PL+ + +A Y + RIT E V ++G+ +P ++
Sbjct: 214 AFSLTSARPEVRKQLMPVEARHPLDHVKEALLRYQAATGK-RITLEVVAIEGLTCTPEES 272
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ +G+ +N+IP+NP PG Y + +F + + + +R +G I
Sbjct: 273 RAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRYRKGQHIH 332
Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL + PR+ + G
Sbjct: 333 GACGQLGVV------TPRKTHREAG 351
>gi|108563778|ref|YP_628094.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori HPAG1]
gi|123246875|sp|Q1CRK2|RLMN_HELPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|107837551|gb|ABF85420.1| hypothetical protein HPAG1_1353 [Helicobacter pylori HPAG1]
Length = 357
Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
+ F++ EI + S DG++K+L + ++ +T I E +
Sbjct: 54 EREFTLRTIEITHVRKSVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S RRIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPRRITVSTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|297184182|gb|ADI20301.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 302
Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 112/320 (35%), Positives = 170/320 (53%), Gaps = 21/320 (6%)
Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
M+++S+ R LLN HF E+ + S DGT K ++ +E+V IP +
Sbjct: 1 MTNLSKATRELLNAHFEFKQLEVDVMQQSNDGTIKNAVKLH-----DGAFVESVLIPTEK 55
Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
R T CVSSQVGCSL C+FC T K +RNL +EI QV++
Sbjct: 56 RITACVSSQVGCSLDCTFCATAGLKRMRNLDPDEIYDQVVVIDR-------------QGK 102
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
GR ++NIV MGMGEPL N++NV ++ +D GL S +RITLST G I ++
Sbjct: 103 EHFGRPLTNIVFMGMGEPLLNYNNVLAAIDKITDPKGLGMSPKRITLSTIGVPKLIKKMA 162
Query: 233 EE-IGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLK 290
++ + LAISLH+ + R L+P+ + L L ++ +++ + +TFEYV+ +
Sbjct: 163 DDGVRFGLAISLHSAIEEKRAKLMPLAHRSTTLVDLRESLQYWYAKTGRG-VTFEYVIWR 221
Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
IND+ DA+ L K IP K+N+I +NP Y + Q + + ++ + +
Sbjct: 222 DINDTEEDAIALAKFCGAIPTKVNIIQYNPIDNGPYTQASQAAVDLYKRILEERRIIATV 281
Query: 351 RTPRGLDILAACGQLKSLSK 370
R RG DI AACGQL + ++
Sbjct: 282 RHSRGQDIDAACGQLANKTE 301
>gi|329766407|ref|ZP_08257953.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137176|gb|EGG41466.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 351
Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 116/368 (31%), Positives = 189/368 (51%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ L ++ EE+E+ ++ +G P R R QI +Y + ++ + + +R L +
Sbjct: 2 KDLYRLLPEEMEQMVIDMGQP----RYRADQILYPLYYKFPKNISEIRQLPTMMRDKLAE 57
Query: 67 H-FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGP--VEIETVYIPEKSRGTLCVSSQV 122
+ I V +S T K LL ++ I R T+CVS+QV
Sbjct: 58 EGYVIGSATEVHRVVSEDGDTTKLLLNLADGTPVETVLIQYPPSKINGHPRSTICVSTQV 117
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C+FC TG RN+ AEEI+ QV+ LL G+ ++N+
Sbjct: 118 GCAMGCTFCATGQMGFERNIKAEEIVAQVIHFAELL--------------EKRGQHVTNL 163
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEPL N+D +++ + + G +R IT+ST G + I ++ EE + LAI
Sbjct: 164 VFMGMGEPLVNYDETIRAVRLLTHPRGFGIGQRNITISTIGIISGIDKLAEEDLQIGLAI 223
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA ++ LR LVP + ++ LI A + Y + RR+TFEY +++G+NDSP A
Sbjct: 224 SLHAPNDKLRQKLVPTAGPHSVDDLIAAGKRYFKKT-GRRVTFEYALIEGVNDSPEIAKE 282
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L G + +NLIP NP G ++ ++ ++ F + +G + +R +G +I AA
Sbjct: 283 LSLLLDGNGSHVNLIPLNPTTG-DFHRPSKRSVLEFERILNIAGVNCTVRVEKGTEISAA 341
Query: 362 CGQLKSLS 369
CGQL++
Sbjct: 342 CGQLRTDV 349
>gi|261838701|gb|ACX98467.1| hypothetical protein KHP_1277 [Helicobacter pylori 51]
Length = 357
Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 129/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + FQ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFQEMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVFLKMKDKKIDEETNAILESEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|167751032|ref|ZP_02423159.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702]
gi|167655950|gb|EDS00080.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702]
Length = 345
Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats.
Identities = 104/366 (28%), Positives = 180/366 (49%), Gaps = 35/366 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + E+ E+ L + G R +Q I++ IY R F M+ S +++
Sbjct: 2 TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRRASGFDEMTLTSADIKAF 54
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ + +I + S T K+L +ETV + +K ++C+S+Q G
Sbjct: 55 LSDKYFFGKLKIDEILQS-VDTSKYLFELS-----DGCRVETVLMRQKFGNSICISTQSG 108
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC +G + R+LTA E++ Q+L I NI
Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILAVEKH-----------------QNITIGNIT 151
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
+MG+GEP N+D + L I + G+ + IT+ST G + LA+S
Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIETGTKHITVSTCGLCDKTKLFAERKEPCNLAVS 211
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++RN L+P+NR+Y + +I++ ++Y +N ++ EY++L GINDS +A L
Sbjct: 212 LHAPDDEIRNRLMPVNRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ +NLIP+NP P E+ S +++I F + +K++ + R G ++ AAC
Sbjct: 271 AALIGNARLFVNLIPYNPSPDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330
Query: 363 GQLKSL 368
GQL+S
Sbjct: 331 GQLRSD 336
>gi|308062688|gb|ADO04576.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Cuz20]
Length = 357
Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCTFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|308064180|gb|ADO06067.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Sat464]
Length = 357
Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats.
Identities = 129/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|332674192|gb|AEE71009.1| cfr family radical SAM enzyme [Helicobacter pylori 83]
Length = 357
Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVFLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|299143975|ref|ZP_07037055.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518460|gb|EFI42199.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 349
Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats.
Identities = 114/374 (30%), Positives = 190/374 (50%), Gaps = 33/374 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++ +L +E+E + G R Q++ + + + D + S++ + +
Sbjct: 1 MMEINNLY---LDEIENKVKFYG----EKNFRAMQLYNFFHKQKRTDIEN-SNLPKSLIT 52
Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ ++ I I++E S D T+K+L + + I V + K + C+S+Q
Sbjct: 53 KILEYEKIQTVSILEEYSSKLDETKKFLFKLEDKNIVEG-----VLMKYKHGYSQCISTQ 107
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC + C FC + + L+RNL+A E+L QV +SN
Sbjct: 108 VGCRMGCVFCASTKEGLIRNLSAYEMLGQVYEVEKRF-----------------NINVSN 150
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
I++MG GEP N+DNV + L + G + S R IT+ST G V I + +E + LA
Sbjct: 151 IILMGSGEPFDNYDNVIRFLKLVHSKEGKNLSYRNITISTCGIVDKIYELSKENLPITLA 210
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLH +N R+ ++PIN+KY +E +I AC++Y ++N+ RITFEY ++ G ND+ +A
Sbjct: 211 ISLHNTNNISRDNIMPINKKYNIEQIIQACKNYSNMTNS-RITFEYTLIGGQNDTLENAQ 269
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L ++ G+ A INLIP NP +QK++ F + ++ + IR G DI+A
Sbjct: 270 ELKSLINGLKAHINLIPLNPIKEYNKKRPNQKEVEDFKKKLEALKLNVTIRRELGADIMA 329
Query: 361 ACGQLKSLSKRIPK 374
+CGQL+ + K
Sbjct: 330 SCGQLRRKYEGGDK 343
>gi|116328894|ref|YP_798614.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330499|ref|YP_800217.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|122281743|sp|Q04UG1|RLMN_LEPBJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|122283323|sp|Q04Z14|RLMN_LEPBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|116121638|gb|ABJ79681.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124188|gb|ABJ75459.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 351
Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats.
Identities = 114/365 (31%), Positives = 172/365 (47%), Gaps = 27/365 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L G +EL E ++ +G R QI+ +YV ++ + S+ ++ L
Sbjct: 13 KIPLKGRTLKELSEIMVSLG----EKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKLE 68
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
S+ +V S DGT+K+ V I + + R T+C+SSQVGC+
Sbjct: 69 GLCSLTQLTVVKHLKSVDGTQKFTFASEQGKEFEAVWIPSG---DGGRKTICISSQVGCT 125
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC T + NL A EI+ QVL ++GD +N+V M
Sbjct: 126 LNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDNA-----------------TNVVFM 168
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
GMGEP N+ NV ++ SI D L+ +RIT+STSG V I R + AISL+
Sbjct: 169 GMGEPFHNYFNVIRAASILHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLN 228
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ R ++ I K+ L L+ A + + RITFEYVM+ G++ P +A L+K
Sbjct: 229 HPDPNGRLQIMDIEEKFALSELLQAAKDFTRELKR-RITFEYVMIPGVSMGPENANKLVK 287
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
I + + KIN+IP N + ++++ F ++ +G R G DI ACG
Sbjct: 288 IARSLDCKINVIPLN-TEFFGWRRPTKQEVAEFITLLEPAGVPILNRRSPGKDIFGACGM 346
Query: 365 LKSLS 369
L S S
Sbjct: 347 LASKS 351
>gi|188528191|ref|YP_001910878.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470]
gi|205829774|sp|B2UVG6|RLMN_HELPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|188144431|gb|ACD48848.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470]
Length = 357
Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADEIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|317014803|gb|ADU82239.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Gambia94/24]
Length = 357
Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats.
Identities = 128/380 (33%), Positives = 194/380 (51%), Gaps = 37/380 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEIAHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VR+L A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAVEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLSKRIP 373
+ LDI AACGQL+ +
Sbjct: 337 KALDIEAACGQLREKKLQQK 356
>gi|15612390|ref|NP_224043.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori J99]
gi|11387372|sp|Q9ZJI4|RLMN_HELPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|4155932|gb|AAD06899.1| putative [Helicobacter pylori J99]
Length = 357
Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats.
Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 37/380 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET + E +
Sbjct: 54 EQEFTLRTIEIAHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VR+L A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKE--------------ANNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAVEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLSKRIP 373
+ LDI AACGQL+ +
Sbjct: 337 KALDIEAACGQLREKKLQQK 356
>gi|308185186|ref|YP_003929319.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori SJM180]
gi|308061106|gb|ADO03002.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori SJM180]
Length = 357
Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
+ F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EREFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|297380586|gb|ADI35473.1| radical SAM enzyme, Cfr family [Helicobacter pylori v225d]
Length = 357
Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats.
Identities = 127/376 (33%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDGETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQHKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|291335247|gb|ADD94867.1| putative Fe S cluster redox protein [uncultured marine bacterium
MedDCM-OCT-S09-C145]
Length = 348
Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats.
Identities = 118/374 (31%), Positives = 182/374 (48%), Gaps = 39/374 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
++L+G ++LE L G R QI+ W+Y + ++ + + R L
Sbjct: 2 KNLLGCSVKDLESLALNFG----QAAFRGRQIYSWLYNYKNRSKSIDEINVLPLKFRDQL 57
Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ F + ++ ++ DGT K LL +E V IP + R T C+SSQVG
Sbjct: 58 KNEAFLFGELTLNEKYLATDGTLKLLLNTR-----DNESVECVGIPTEKRLTACLSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L A EIL Q+L + + +K+SNIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIENQM-----------------NQKVSNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
MGMGEPL N D + S+ ++ S+R+IT+ST I+++ + +
Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FDISQRKITVSTVAIPKMISKLSKLSFQVLGKCQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LAISLHA + +R ++P + Y ++ +ID CR Y + RR++FEY+ML G+ND
Sbjct: 214 FTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRET-GRRVSFEYLMLHGVNDKL 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L ++KG +NLI +N E+ + K+ F + SG + R RG
Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPTKNAQLFQTRLSNSGINVSFRKSRGS 332
Query: 357 DILAACGQLKSLSK 370
D AACGQL+ K
Sbjct: 333 DRNAACGQLRQNEK 346
>gi|261840101|gb|ACX99866.1| hypothetical protein HPKB_1325 [Helicobacter pylori 52]
Length = 357
Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats.
Identities = 129/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESIDGSKKYLFKSLRDNHTFEAVFLKMRDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|317179603|dbj|BAJ57391.1| hypothetical protein HPF30_1294 [Helicobacter pylori F30]
Length = 357
Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLIDNHTFEAVFLKMKDKKIDGETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVANKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|315585812|gb|ADU40193.1| Fe-S-cluster redox protein [Helicobacter pylori 35A]
Length = 357
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYWWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ +T I E +
Sbjct: 54 EQEFTLRTIEITHVRKSVDGSKKYLFKSLRDNHTFEAVFLKMKDKKIDEKTNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|290980807|ref|XP_002673123.1| predicted protein [Naegleria gruberi]
gi|284086704|gb|EFC40379.1| predicted protein [Naegleria gruberi]
Length = 482
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 157/435 (36%), Positives = 227/435 (52%), Gaps = 62/435 (14%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++SL+G+ + E++E L K P R ++I+K+IY G R F ++ +++ R L+
Sbjct: 31 RKSLMGLNKTEMKEILEKT-HPHVASSFRLNEIYKFIYKFGARKFDDITVLTKSDRQSLS 89
Query: 66 QHFSIIYPEIVDEKIS---CDGTRKWLL-------------------------------- 90
+ +SI ++E+I TRK+L
Sbjct: 90 ELYSIDILGNIEEEIKSKKDKHTRKFLFAFQNPKYVPPVADNSVDSTIVSTTSSASSSCG 149
Query: 91 ------------------RFPARCIGGPVEIETVYIP-----EKSRGTLCVSSQVGCSLT 127
+ VE +Y P RGT+C+SSQVGCSL
Sbjct: 150 NQQNISDADVAISPMKKPTLKEQKQFNKVEAVYIYHPPKASDSFGRGTVCLSSQVGCSLN 209
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMG 186
C FC TGT + RNL A EI+ Q++ + L DFP E S+ + ++NIV MG
Sbjct: 210 CKFCRTGTAPIERNLLASEIVSQLVSVKHRLMDFPIYMTEEERKRASIEKSFVNNIVFMG 269
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
GEPL N+ NVKK++ I SD G SKR+I +STSG I V ++GV LAISLHA
Sbjct: 270 EGEPLYNYKNVKKAIEILSD--GCGISKRKIIVSTSGVCNLIPDVVNDLGVNLAISLHAT 327
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+N+LR+ +VPIN+ +PLE+L + R +N R ITFEYVML +ND DA L+K++
Sbjct: 328 TNELRDNIVPINKIFPLEVLFETLREQCFKNNNRHITFEYVMLNHVNDFIDDAKRLVKLV 387
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K IP +NLI FN W G + CS + I FS+ + ++G S+P+R +G DIL ACGQLK
Sbjct: 388 KDIPCSVNLIAFNEWEGSGFECSSDERIEEFSKYLYKNGISAPVRHSKGQDILGACGQLK 447
Query: 367 SLSKRIPKVPRQEMQ 381
+ ++ +Q Q
Sbjct: 448 NRNENKAGALQQTEQ 462
>gi|317013192|gb|ADU83800.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Lithuania75]
Length = 357
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEIAHVRKSVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDKETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|303280559|ref|XP_003059572.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459408|gb|EEH56704.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 406
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 118/377 (31%), Positives = 187/377 (49%), Gaps = 37/377 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL- 64
+ L+G+ + L + + G P R Q+ +Y + ++ I + R L
Sbjct: 53 RTPLLGLGVDALTKLAKEHGQPG----YRGKQLHDAVYSHRKEAIEAITQIPEAFRSSLR 108
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ +D + DGT+K LL+ IE V + R T+CVSSQVGC
Sbjct: 109 ASGVHVGRVRPIDVVAAPDGTKKVLLKLRC-----GSVIEAVGETRRRRFTVCVSSQVGC 163
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ CSFC TG Q RNLT++EI+ QVL + GR+ +N+VM
Sbjct: 164 AMRCSFCATGRQGFKRNLTSDEIVNQVLALEDVF-----------------GRRATNVVM 206
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
MGMGEPL N V ++ + +G+ R T+ST G ++++ ++ LA+SL
Sbjct: 207 MGMGEPLMNLKEVLRAHRCLNRDVGIGG--RYFTISTVGVPNQLSKLAAHKLQATLAVSL 264
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + +LR L+P + Y ++ L++ CR Y S +R+TFEY +L G NDSP A L
Sbjct: 265 HAPTQELREKLIPSAKAYHVDDLLEDCRLY-KKSTGKRLTFEYTLLAGENDSPEHARALG 323
Query: 304 KILKG---IPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLD 357
++L+ + +NL+P+NP G E + + + F++ + K G + +R RGL+
Sbjct: 324 RLLRTRVGRGSHVNLLPWNPVTGAEDAHARPSKTAVKRFADALAKERGVTFTVRRTRGLE 383
Query: 358 ILAACGQLKSLSKRIPK 374
AACGQL R +
Sbjct: 384 ADAACGQLTGSFVRKGR 400
>gi|254779939|ref|YP_003058046.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori B38]
gi|254001852|emb|CAX30102.1| Conserved hypothetical protein [Helicobacter pylori B38]
Length = 357
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 127/376 (33%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
+ F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EREFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAVEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|291556918|emb|CBL34035.1| radical SAM enzyme, Cfr family [Eubacterium siraeum V10Sc8a]
Length = 345
Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats.
Identities = 104/366 (28%), Positives = 182/366 (49%), Gaps = 35/366 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + E+ E+ L + G R +Q I++ IY R F M+ S +++ L
Sbjct: 2 TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRRASGFDEMTLTSADIKAL 54
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ + +I + S T K+L ++ETV + +K ++C+S+Q G
Sbjct: 55 LSDKYFFGKLKIDEILQS-VDTSKYLFELS-----DGCKVETVLMRQKFGNSICISTQSG 108
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C FC +G + R+LTA E++ Q+L ISN
Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILAVEKH-----------------QNITISNTT 151
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
+MG+GEP N+D + L I + G+ + IT+ST G + + LA+S
Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIETGTKHITVSTCGLCDKMKLFAERKEPCNLAVS 211
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA +++RN L+P+NR+Y + +I++ ++Y +N ++ EY++L GINDS +A L
Sbjct: 212 LHAPDDEIRNRLMPVNRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++ +NLIP+NP E+ S +++I F + +K++ + R G ++ AAC
Sbjct: 271 AALIGNARLFVNLIPYNPSHDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330
Query: 363 GQLKSL 368
GQL+S
Sbjct: 331 GQLRSD 336
>gi|33862037|ref|NP_893598.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|81575609|sp|Q7V010|RLMN_PROMP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|33634255|emb|CAE19940.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 348
Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats.
Identities = 118/374 (31%), Positives = 183/374 (48%), Gaps = 39/374 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
++L+G ++LE+ L G R QI+ W+Y + ++ + + R L
Sbjct: 2 KNLLGCSVKDLEKIALNYG----QAAFRGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQL 57
Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ F + ++ ++ DGT K LL +E V IP + R T C+SSQVG
Sbjct: 58 KNEAFLFGELTLKEKYLATDGTLKLLLNTR-----DNESVECVGIPTEKRLTACLSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L EIL Q+L + + +K+SNIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKVSEILDQILFIENQM-----------------NQKVSNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
MGMGEPL N D + S+ ++ + S+R+IT+ST I+++ E +
Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FAISQRKITVSTVAIPKMISKLSELSFQVLGKCQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LAISLHA + +R ++P + Y ++ +ID CR Y + RR++FEY+ML G+ND
Sbjct: 214 FTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRET-GRRVSFEYLMLHGVNDKL 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L ++KG +NLI +N E+ + K+ F + SG + R RG
Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPIKNAQLFQTRLSNSGINVSFRKSRGS 332
Query: 357 DILAACGQLKSLSK 370
D AACGQL+ K
Sbjct: 333 DRNAACGQLRQNDK 346
>gi|123966894|ref|YP_001011975.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
MIT 9515]
gi|205829807|sp|A2BYK7|RLMN_PROM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|123201260|gb|ABM72868.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9515]
Length = 348
Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats.
Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 39/374 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
++L+G ++LE L G R QI+ W+Y + ++ + R+ L
Sbjct: 2 KNLLGCSVKDLENVALNYG----QAAFRGRQIYSWLYNYKNRSKSIDEINVLPLNFRNQL 57
Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ F + ++ ++ DGT K LL +E V IP + R T C+SSQVG
Sbjct: 58 KKEGFIFGELILKEKYLANDGTLKLLLNTR-----DNESVECVGIPTEKRLTACLSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L A EIL Q+L + + +K++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIENEM-----------------NQKVTNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
MGMGEPL N D + S+ ++ S+RRIT+ST I ++ E +
Sbjct: 156 FMGMGEPLLNIDELLFSIRSINED--FDVSQRRITVSTVAIPNMIRKLSEMSFQVLGKCQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LAISLHA + R ++P + Y ++ +ID CR + + RR++FEY+ML G+ND
Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYHIKYIIDDCREFVKKT-GRRVSFEYLMLHGVNDKL 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L ++KG +NLI +N E+ + K+ F + +G + +R RG
Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNQIEEVEFKQTPSKNAQLFQNRLSNNGINVSLRKSRGS 332
Query: 357 DILAACGQLKSLSK 370
D AACGQL+ +K
Sbjct: 333 DRNAACGQLRQNAK 346
>gi|254527128|ref|ZP_05139180.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT
9202]
gi|221538552|gb|EEE41005.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT
9202]
Length = 348
Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats.
Identities = 119/371 (32%), Positives = 179/371 (48%), Gaps = 39/371 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
++L+G ++LE L+ G R QI WIY + + + + R L
Sbjct: 2 KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIYNYRNKKKSIDQIEVLPLDFRKKL 57
Query: 65 NQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
F + + + ++ DGT K LL IE V IP + R T C+SSQVG
Sbjct: 58 KDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L A EIL Q+L + + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIENEM-----------------NRKVTNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
MGMGEPL N D++ S+ + S+R+IT+ST I ++ +
Sbjct: 156 FMGMGEPLLNIDDLLVSIRSINKD--FQISQRKITVSTVAVPKMINKLSAKSFQILGNCQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LAISLHA + +R ++P + Y +E +I+ C+ Y RR++FEY+ML G+ND
Sbjct: 214 FTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLSGVNDKL 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L +LKG +NLI +N E+ + K + +F + +G + +R RGL
Sbjct: 273 EHANELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSKLSHNGIAVSLRKSRGL 332
Query: 357 DILAACGQLKS 367
D AACGQL+
Sbjct: 333 DKNAACGQLRQ 343
>gi|317011560|gb|ADU85307.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori SouthAfrica7]
Length = 357
Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats.
Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 37/380 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDGETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VR+L A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIVQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILASK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLIKNLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLSKRIP 373
+ LDI AACGQL+ +
Sbjct: 337 KALDIEAACGQLREKKLQQK 356
>gi|217032118|ref|ZP_03437618.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128]
gi|216946266|gb|EEC24874.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128]
Length = 365
Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats.
Identities = 126/376 (33%), Positives = 192/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
+ F++ EI + S DG++K+L + ++ ET + E +
Sbjct: 54 EREFTLRTIEIAHVRKSVDGSKKYLFKSLKDNHTFEAVLLKMKDKKIDGETNAVLEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKAFNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|298735612|ref|YP_003728137.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori B8]
gi|298354801|emb|CBI65673.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori B8]
Length = 357
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 126/376 (33%), Positives = 192/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
+ F++ EI + S DG++K+L + ++ ET + E +
Sbjct: 54 EREFTLRTIEIAHVRKSVDGSKKYLFKSLKDNHTFEAVLLKMKDKKIDGETNAVLEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKAFNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|308183521|ref|YP_003927648.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori PeCan4]
gi|308065706|gb|ADO07598.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori PeCan4]
Length = 357
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 127/376 (33%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELGQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRKSVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D+ A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DNLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|109946741|ref|YP_663969.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
acinonychis str. Sheeba]
gi|123362803|sp|Q17ZF6|RLMN_HELAH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|109713962|emb|CAJ98970.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 353
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 129/376 (34%), Positives = 192/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KPSVYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F + EI S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFVLRTIEITHVSHSVDGSKKYLFKSLKDNHTFEAVFLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + E+
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAEK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLIKNLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLNCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|317178131|dbj|BAJ55920.1| hypothetical protein HPF16_1323 [Helicobacter pylori F16]
Length = 357
Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats.
Identities = 127/376 (33%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
Q F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVFLKMRDKKIDGETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T +RNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCAFCFTQKGGFIRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|282882048|ref|ZP_06290689.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B]
gi|281298078|gb|EFA90533.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B]
Length = 348
Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats.
Identities = 113/365 (30%), Positives = 177/365 (48%), Gaps = 31/365 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L M +EL++ L + R +Q++ + + D + S++S+ +L
Sbjct: 3 LNSMYLDELKDYLSS----KSEKSFRANQLYTFFHKNKRWDIEN-SNLSKSTLKILQND- 56
Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I +I+ S D T+K+L IE V + + C+S+QVGC +
Sbjct: 57 EINTIKILKIFQSKLDDTKKFLFTL-----DDSNVIEGVLMKYSFGYSQCISTQVGCRMG 111
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC + L RNLT E+L QV + + G + N ++MG
Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYF-----------------GINVKNFILMGS 154
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL NFDNV K L I G + S R IT+ST G V I ++ + + LA+SLH
Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ R+ ++PINRKY L L A Y L RITFEY ++KG ND+ ++ L ++
Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKEMF 273
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ + INLIP NP +++DI F ++ + ++ +R G DI A+CGQL+
Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333
Query: 367 SLSKR 371
+ R
Sbjct: 334 ASLLR 338
>gi|300814530|ref|ZP_07094786.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511357|gb|EFK38601.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 348
Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats.
Identities = 114/365 (31%), Positives = 177/365 (48%), Gaps = 31/365 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L M +EL++ L G R +Q++ + + D + S++S+ + Q+
Sbjct: 3 LNSMYLDELKDYLSSKG----EKSFRANQLYTFFHKNKRWDIEN-SNLSKSTL-KIIQND 56
Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I +I+ S D T+K+L IE V + + C+S+QVGC +
Sbjct: 57 EINTIKILKIFQSKLDTTKKFLFTL-----DDSNVIEGVLMKYNFGYSQCISTQVGCRMG 111
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC + L RNLT E+L QV + + G + N ++MG
Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYF-----------------GINVKNFILMGS 154
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
GEPL NFDNV K L I G + S R IT+ST G V I ++ + + LA+SLH
Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
++ R+ ++PINRKY L L A Y L RITFEY ++KG ND+ ++ L +
Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKDMF 273
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+ + INLIP NP +++DI F ++ + ++ +R G DI A+CGQL+
Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333
Query: 367 SLSKR 371
+ R
Sbjct: 334 ASLLR 338
>gi|157414083|ref|YP_001484949.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. MIT 9215]
gi|205829804|sp|A8G6Y2|RLMN_PROM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|157388658|gb|ABV51363.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9215]
Length = 348
Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats.
Identities = 118/371 (31%), Positives = 179/371 (48%), Gaps = 39/371 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
++L+G ++LE L+ G R QI WIY + + + + R L
Sbjct: 2 KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIYNYRNKKKSIDQIEALPLDFRKKL 57
Query: 65 NQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
F + + + ++ DGT K LL IE V IP + R T C+SSQVG
Sbjct: 58 KDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L A EIL Q+L + + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIENEM-----------------NRKVTNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
MGMGEPL N D++ S+ + S+R+IT+ST I ++ +
Sbjct: 156 FMGMGEPLLNIDDLLVSIRSINKD--FQISQRKITVSTVAVPKMINKLSAKSFQILGNCQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LAISLHA + +R ++P + Y +E +I+ C+ Y RR++FEY+ML G+ND
Sbjct: 214 FTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLSGVNDKL 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L +L+G +NLI +N E+ + K + +F + +G + +R RGL
Sbjct: 273 EHANELSNLLRGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSRLSHNGIAVSLRKSRGL 332
Query: 357 DILAACGQLKS 367
D AACGQL+
Sbjct: 333 DKNAACGQLRQ 343
>gi|323453959|gb|EGB09830.1| hypothetical protein AURANDRAFT_12530 [Aureococcus anophagefferens]
Length = 323
Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats.
Identities = 112/340 (32%), Positives = 167/340 (49%), Gaps = 22/340 (6%)
Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90
+ R QI +WIY +G+ DF MS++ ++ R L + + I ++ R +
Sbjct: 1 PKFRAKQIHEWIYDKGVHDFDAMSNLPKKFRDDLKARGATVGGTIAKLRVEQVSQRDGTI 60
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
+ G V + E R T C+SSQ GC + C+FC TG L R+LTA EI Q
Sbjct: 61 KRAYEFRDGSVVESVLMPYEDGRRTACISSQAGCGMGCTFCATGQMGLTRHLTAAEIFEQ 120
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
L + G ++SN+V MGMGEPL N+ NV + +D +G+
Sbjct: 121 AARFSRELS--------------ARGERLSNVVFMGMGEPLANYKNVMAAARRINDELGV 166
Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
R IT+ST G I ++ E+ V LA+SLH ++ R+ ++P+N +Y LE L+ A
Sbjct: 167 G--ARHITISTVGLARGIGKLAEDPLQVTLAVSLHQATDAARSAIMPVNDRYDLETLLGA 224
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326
R Y + RR+TFE+ + G ND A L +LK A +N+IP NP G
Sbjct: 225 VRDYQAAT-RRRVTFEWAAIAGENDDVDAARTLGALLKKHGIRDAHVNVIPLNPTKGYGG 283
Query: 327 LCSDQKDIVTFSECIK-RSGYSSPIRTPRGLDILAACGQL 365
+ + F + ++ G S+ R RG+DI A CGQL
Sbjct: 284 KRAKNGAVDRFCKTLEAEFGVSATPRVRRGIDIDAGCGQL 323
>gi|210135589|ref|YP_002302028.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori P12]
gi|254807183|sp|B6JNS0|RLMN_HELP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|210133557|gb|ACJ08548.1| radical SAM domain-containing enzyme [Helicobacter pylori P12]
Length = 357
Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats.
Identities = 125/376 (33%), Positives = 192/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
+ F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EREFTLRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDKETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|15646037|ref|NP_208219.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori 26695]
gi|3287947|sp|O25970|RLMN_HELPY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|2314600|gb|AAD08467.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 357
Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 195/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
+ F++ EI + S DG++K+L + ++ ET I E+ +
Sbjct: 54 EREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETNAILEREKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PLEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ ++ F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|307104499|gb|EFN52752.1| hypothetical protein CHLNCDRAFT_36696 [Chlorella variabilis]
Length = 336
Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats.
Identities = 118/357 (33%), Positives = 180/357 (50%), Gaps = 33/357 (9%)
Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYPEIVDEK 79
+ +G P R Q+ G R ++ +S+++R L + +
Sbjct: 1 MASMGQPT----YRAKQLRDA----GARSVHDVTTLSKDLRAQLAERGVRTGRSVLHHSV 52
Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
S DGTRK+LL+ + V I + R T+CVSSQVGC + C+FC TG
Sbjct: 53 ASPDGTRKFLLQLADGRVVEAVGIPADGGD-RRRLTVCVSSQVGCPMRCTFCATGKGGFA 111
Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
RNL EI+ QVL + G+++SNIV MGMGEPL N +V +
Sbjct: 112 RNLLPHEIVDQVLTVQE-----------------EFGQRVSNIVFMGMGEPLLNLPSVLR 154
Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
+ I + +G+ R IT+ST G I R+ ++ LA+S+HA S LR +VP
Sbjct: 155 AHEILNKDVGVG--ARHITISTVGVPNAIRRMARLQLQSTLAVSIHAPSQALRETIVPSA 212
Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG--IPAKINLI 316
R YPL+ L+ C+ Y LS RR+TFEY +L G+ND A L +L+ + + +NLI
Sbjct: 213 RAYPLDALMADCQEYFRLS-GRRVTFEYTLLAGVNDGVGQAEELAALLRRHDLRSHVNLI 271
Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
P+NP E+ ++ + F+ +++ G +R RGL+ AACGQL++ ++ P
Sbjct: 272 PWNPVDDSEFQRPTRRAVQAFAAALEQRGIPVSVRHTRGLEAAAACGQLRNQHQKTP 328
>gi|126697010|ref|YP_001091896.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
MIT 9301]
gi|205829802|sp|A3PEX0|RLMN_PROM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|126544053|gb|ABO18295.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9301]
Length = 347
Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats.
Identities = 120/374 (32%), Positives = 185/374 (49%), Gaps = 39/374 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
++L+G ++LE L G R QI+ WIY ++ + + + R L
Sbjct: 2 KNLLGSTIKDLENVALDYG----QAGFRGRQIYNWIYNYRNKKKNIDQIEVLPLDFRKRL 57
Query: 65 NQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
F + I + ++ DGT K LL IE V IP + R T C+SSQVG
Sbjct: 58 KDDGFKVSDLSIHERNLANDGTLKLLLSTE-----DNESIECVGIPTEKRLTACLSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L EIL Q+L + + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKVSEILDQILFIENEM-----------------NRKVTNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
MGMGEPL N D++ S+ ++ L S+R+IT+ST I ++ +
Sbjct: 156 FMGMGEPLLNIDDLLLSIRSINED--LKISQRKITVSTVAVPKMINKLSAKSFKILGNCQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LA+SLHA + +R ++P + Y +E +I+ C+ Y RR++FEY+ML+G+ND
Sbjct: 214 FTLAVSLHAPNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLRGVNDKI 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L +LKG +NLI +N E+ + KD+ +F + +G + +R RGL
Sbjct: 273 EHANELSHLLKGFQCHVNLIQYNQIDEVEFQRACLKDLQSFQSRLSHNGIAVSLRKSRGL 332
Query: 357 DILAACGQLKSLSK 370
D AACGQL+ ++
Sbjct: 333 DKNAACGQLRQNAR 346
>gi|208435296|ref|YP_002266962.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27]
gi|254807184|sp|B5Z947|RLMN_HELPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|208433225|gb|ACI28096.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27]
Length = 357
Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 127/376 (33%), Positives = 193/376 (51%), Gaps = 37/376 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L
Sbjct: 2 KASVYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI----------GGPVEIETVYIPEKSRG 114
+ F++ EI + S DG++K+L + ++ ET I E +
Sbjct: 54 EREFTLRTIEIAHVRKSIDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKY 113
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL +
Sbjct: 114 TVCVSCQIGCQVGCTFCFTQKGGFVRNLKASEIIQQALLIKED--------------NNL 159
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I + +
Sbjct: 160 PIEKALNIVFMGMGEPLNNLDEVCKAIEIF--NTGMQISPKRITISTSGVADKIPILAGK 217
Query: 235 I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++K +N
Sbjct: 218 NLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLN 276
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
DS A L+K+L GI +K+NLI FNP G ++ + F++ + G IR
Sbjct: 277 DSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCTIRES 336
Query: 354 RGLDILAACGQLKSLS 369
+ LDI AACGQL+
Sbjct: 337 KALDIEAACGQLREKK 352
>gi|169333679|ref|ZP_02860872.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM
17244]
gi|169259673|gb|EDS73639.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM
17244]
Length = 342
Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 179/365 (49%), Gaps = 31/365 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L G+ LEE I + + R QI+KW+Y ++ M+++S +R L +
Sbjct: 2 TNLFGLN---LEEIEKIIVEEYKEPKFRAKQIFKWLYDSYVKSIDEMTNLSLSLREKLKE 58
Query: 67 HFSIIY-PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I + K T K+LL+ + IE V + ++ TLCVS+Q GC
Sbjct: 59 EYYINHLKLEKKFKEEKSSTTKFLLKTE-----DDILIECVLLRYEAGATLCVSTQAGCR 113
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC +G L+RNLT EIL ++ L + +ISNIV+M
Sbjct: 114 MGCVFCESGKCGLIRNLTKGEILNEIYLVSEI-----------------EDIRISNIVLM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G GEPL N+D V L + +D L+ SKR ITLST G I + + + LA+SLH
Sbjct: 157 GSGEPLDNYDEVVGFLKLVTDVNTLNMSKRSITLSTCGIKDKIYSLADSGLDINLALSLH 216
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++R ++PI + +E ++DA +Y RRIT+EY +++G ND+ L
Sbjct: 217 APFHEMRESMMPIEKANNIEEVLDATFYY-RSKTGRRITYEYCLIEGKNDTIECIDKLYD 275
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+ KG + IN+I N + K I F + ++ G + IR G I AACGQ
Sbjct: 276 LFKGTDSLINVIGVN---DSSKKRVNDKYIHAFVDKLRNKGINVTIRRRLGSSINAACGQ 332
Query: 365 LKSLS 369
LKS
Sbjct: 333 LKSRY 337
>gi|212550675|ref|YP_002308992.1| hypothetical protein CFPG_318 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548913|dbj|BAG83581.1| conserved hypothetical protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 322
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 120/341 (35%), Positives = 180/341 (52%), Gaps = 25/341 (7%)
Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
QI W+Y R + + M++IS R LN+H+ I E + ++ S DG K+L
Sbjct: 4 FTAKQIANWLYKRRVSSIEEMTNISLLHRKQLNEHYYIGKKEYLYKQKSMDGAIKYLFSI 63
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
R IE+VYIPEK+R TLCVSSQ+GC + C FC TG Q LT +I+ Q++
Sbjct: 64 NNR-----HFIESVYIPEKARATLCVSSQIGCKMHCLFCTTGRQGFEGQLTTGDIINQII 118
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++N+V MGMGEPL N + + KSL I + + G ++
Sbjct: 119 SI-------------------PESASLTNLVFMGMGEPLDNIEVLLKSLEILTANYGFAW 159
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
S +RIT+ST G +P + R+ EE V LAIS+H+ + R +PI +KYP++ +I +
Sbjct: 160 SPKRITISTVGIIPELKRLLEETKVRLAISVHSPFHAERMSWIPIEKKYPIKKIIGLIQQ 219
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
Y R++FEY+ +ND + A L ++LKGIP ++NLI ++P SD K
Sbjct: 220 YNFRFQR-RVSFEYITFGRLNDDIKHASALFRLLKGIPCRVNLIKYHPQQDTVLPASDLK 278
Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
+++ F + IR+ RG DI AACG L + +
Sbjct: 279 NMIAFRNYLNSKKIICTIRSSRGEDISAACGMLSTKKNKRN 319
>gi|224003697|ref|XP_002291520.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973296|gb|EED91627.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 343
Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats.
Identities = 122/348 (35%), Positives = 187/348 (53%), Gaps = 31/348 (8%)
Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
++ R QI WI+ +G+ MSD+ ++R +L + ++ + E++S DGTRK
Sbjct: 17 KYPAFRARQIHNWIFSQGVTSIDDMSDLPLKLRTMLKERATVGSLHLEVEQVSQDGTRKR 76
Query: 89 LLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
+ IE+V +P + R T CVSSQ GC++ C FC TG R LT++EI
Sbjct: 77 AYKLH-----DGQMIESVLMPYEDGRRTACVSSQAGCAMGCVFCATGQMGFARQLTSDEI 131
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
QV + L G ++SN+VMMGMGEPL N+ NV ++ +
Sbjct: 132 FEQVATFANEL--------------KGEGERLSNVVMMGMGEPLANYRNVLAAMHRMNTD 177
Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKY-PLEM 265
+G+ R+IT+ST G VPNI ++ EE V LA+SLH +++ R L+P NR+Y L+
Sbjct: 178 LGIG--ARKITISTVGVVPNIKKLIEEDLQVRLALSLHCATDEERTALLPANRRYGGLDE 235
Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI-----LKGIPAKINLIPFNP 320
L+ R Y + R+TFE+ +++G NDS A L ++ ++ A +NLIP NP
Sbjct: 236 LMTTIREYIRV-KKMRVTFEWALIEGQNDSKDVARTLGRLLQKHDIRPDMAHVNLIPLNP 294
Query: 321 WPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQLKS 367
G S + ++ F E +++ G S+ R RG+DI A CGQLK+
Sbjct: 295 TGGYGGGPSGRNNVHRFVEVLEKEFGISATPRMRRGIDIDAGCGQLKA 342
>gi|78779958|ref|YP_398070.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
MIT 9312]
gi|123768932|sp|Q318R1|RLMN_PROM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|78713457|gb|ABB50634.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str.
MIT 9312]
Length = 348
Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats.
Identities = 115/374 (30%), Positives = 180/374 (48%), Gaps = 39/374 (10%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
++L+G ++LE L G R QI+ WIY ++ + + + R L
Sbjct: 2 KNLLGSSIKDLENIALDYG----QAAFRGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKL 57
Query: 65 NQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
F + ++K++ DGT K LL IE V IP + R T C+SSQVG
Sbjct: 58 KDDGFKVSELSFQEKKLANDGTLKLLLSTN-----DNESIECVGIPTEKRLTACLSSQVG 112
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG + L R+L A EIL Q+L + + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIENEM-----------------NRKVTNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
MGMGEPL N D + S+ ++ S+R+IT+ST ++++
Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FQISQRKITVSTVAVPKMMSKLSARSFQILGNCQ 213
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LAISLHA + R ++P + Y ++ +I+ + + RR++FEY+ML G+ND
Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYEIKNIIEDSKQFVK-DTGRRVSFEYLMLSGVNDKL 272
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L +L+G +NLI +N E+ + K++ F + +G + R RGL
Sbjct: 273 EHANELSNLLRGFQCHVNLIQYNQIDEVEFKRASLKNLQLFQSRLSNNGITVSFRKSRGL 332
Query: 357 DILAACGQLKSLSK 370
D AACGQL+ ++
Sbjct: 333 DKNAACGQLRQNAR 346
>gi|328948233|ref|YP_004365570.1| ribosomal RNA large subunit methyltransferase N [Treponema
succinifaciens DSM 2489]
gi|328448557|gb|AEB14273.1| Ribosomal RNA large subunit methyltransferase N [Treponema
succinifaciens DSM 2489]
Length = 342
Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 172/364 (47%), Gaps = 31/364 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
KK SL G+ EE+ +A+ R QI++WI +G F+ M++I + R
Sbjct: 1 MEKKVSLSGLFPEEIAKAIQ------LSPLFRAKQIYEWI-SKGAESFEQMTNIDKTTRK 53
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L ++ + ++ + DGT K + + ++ R T CVS Q
Sbjct: 54 FLEENVLLRSSKVTEVLKDPDGTIKLQISLSDGL----AIETVLLTDKEGRKTACVSCQA 109
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C+FC TG L RNLTA EI+ + G + NI
Sbjct: 110 GCAMGCAFCQTGRLGLGRNLTAGEIVEEFFFMEKEAGT------------------LDNI 151
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAI 241
V MGMGEPL N D ++K+++I +D G S RRITLST G + I + E LAI
Sbjct: 152 VFMGMGEPLQNLDAIRKAVAILTDKKGRGLSPRRITLSTCGLISGIYELAENGPFVRLAI 211
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL LR L+P+++ PL L A + Y + RIT E +L G N A
Sbjct: 212 SLTTADPALREQLMPVSKGNPLPELKTAIKFYSEKTGK-RITLEAALLSGQNTGLESAKR 270
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ + G+ A INLIP+NP G ++ +K+ F + ++ + +RT RG+ I A
Sbjct: 271 MAEFAAGLDAYINLIPWNPVQGLQFKTPSRKECEEFVKILQNANLKVNLRTRRGVKIGGA 330
Query: 362 CGQL 365
CGQL
Sbjct: 331 CGQL 334
>gi|322435186|ref|YP_004217398.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9]
gi|321162913|gb|ADW68618.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9]
Length = 383
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 126/373 (33%), Positives = 186/373 (49%), Gaps = 31/373 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN-QH 67
L G+ EL + +G R Q+ +Y + + + ++ + VR L +
Sbjct: 22 LFGLSGAELRALVEDMG----ERPFRAKQLIDGLYKQRVGAVEEITTLPIAVRERLAAEG 77
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCI--------GGPVEIETVYI-PEKSRGTLCV 118
+ + PE+ S DGT ++L+R G E++ P R T+CV
Sbjct: 78 WVVGLPELAQTAKSVDGTERYLVRLADGETVETVWMPGGDGAELQEGDEGPGYKRATICV 137
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC++ C FC T + RNLTA EI QV + G G + I
Sbjct: 138 SSQVGCAVNCQFCLTAKLGMRRNLTAGEIAGQVTAVLNRQGIVIGKDRI----------- 186
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
N+V MGMGEP N+D+ ++ + + MG R+T+STSG P I R E
Sbjct: 187 --NLVFMGMGEPFLNYDSFMDAVRLLVNEMG--IPASRMTVSTSGIEPAIRRFALEPIRP 242
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SL+A ++ +R ++PI RK+ +E L+DA + P L +TFEYV+L G+ND P
Sbjct: 243 NLALSLNASNDVVRESIMPITRKWDIEALLDAVKSVP-LRRQEYVTFEYVLLGGVNDQPE 301
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
A ++ +LKG+ AK+NLI +NP PG Y Q+ F + + G + R PRG D
Sbjct: 302 HAREVLALLKGMQAKVNLIVWNPGPGVAYEQPSQEAADAFHKMLVVGGVPAFTRRPRGRD 361
Query: 358 ILAACGQLKSLSK 370
I AACGQLK +
Sbjct: 362 IYAACGQLKRTVE 374
>gi|289643660|ref|ZP_06475773.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca
glomerata]
gi|289506551|gb|EFD27537.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca
glomerata]
Length = 413
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 176/368 (47%), Gaps = 25/368 (6%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR--GIRDFQGMSDISQEVRHLL 64
L + + E + +G P R Q+ + + R D + M+D+ R L
Sbjct: 44 RHLADLTTTQRRELTVSLGEPA----FRADQVARHYFARYLRAGDAEAMTDLPAASRAAL 99
Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ T K L R V IE+V + R T+CVSSQ G
Sbjct: 100 LEALLPALLTPARTMTCDAGATHKTLWR-----AFDGVLIESVLMRYPDRATVCVSSQAG 154
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG L RNL+A EI+ QV+ A I + ++SN+V
Sbjct: 155 CGMGCPFCATGQGGLTRNLSAAEIVEQVVAA---------AGAIARGELAGGPARLSNVV 205
Query: 184 MMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
MGMGEPL N+ V +L A GL S R IT+ST G VP I R+ V LA
Sbjct: 206 FMGMGEPLANYATVVAALRVLTAPPPAGLGLSARSITVSTVGLVPAIRRLAGAGLPVTLA 265
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++LR+ LVP+NR++P+ ++ A Y + RR++ EY ++ +ND P A
Sbjct: 266 VSLHAPDDELRDSLVPVNRRWPVAEVLTAAWEYAE-TTGRRVSIEYALIDDVNDQPERAD 324
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +L G A +NLIP NP G + S+++ F ++ G ++ +R RG DI A
Sbjct: 325 ALADLLVGRLAHVNLIPLNPTRGVSWQASERRREREFVRRLRLRGITATVRDTRGRDIAA 384
Query: 361 ACGQLKSL 368
ACGQL +
Sbjct: 385 ACGQLAAD 392
>gi|71900902|ref|ZP_00683017.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
gi|71729314|gb|EAO31430.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
Length = 309
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 137/308 (44%), Positives = 181/308 (58%), Gaps = 25/308 (8%)
Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
S DGT KWLL IETVYIP+K RGTLCVSSQ+GC L C+FC T TQ R
Sbjct: 2 SADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCSTATQGFNR 58
Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
NLT EI+ QV +A LG+ P R+++N+VMMGMGEPL NFDNV ++
Sbjct: 59 NLTTAEIIGQVWVAARHLGNVPHQR-----------RRLTNVVMMGMGEPLMNFDNVVRA 107
Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
+S+ D +G S +R+TLSTSG VP I R+ E V LA+SLHA ++ LR LVP+N+K
Sbjct: 108 MSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLNKK 167
Query: 261 YPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-------- 311
YP+ L+ +C Y + +TFEY ++KG+ND A L K+++
Sbjct: 168 YPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKGAA 227
Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
K+NLIPFNP+PG Y S + DI F + + + + +R RG DI AACGQLK
Sbjct: 228 KVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQV-- 285
Query: 372 IPKVPRQE 379
+ + RQ
Sbjct: 286 VDRTRRQA 293
>gi|149200056|ref|ZP_01877081.1| YloN [Lentisphaera araneosa HTCC2155]
gi|149136814|gb|EDM25242.1| YloN [Lentisphaera araneosa HTCC2155]
Length = 345
Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats.
Identities = 108/365 (29%), Positives = 171/365 (46%), Gaps = 27/365 (7%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M RE ++ + + +P + R Q+ + + F +++ +++R+ L + ++
Sbjct: 1 MNRERIQTIVDEYKLP----KFRAKQLKEAFFEHHYSSFDQLTNFPKDLRNKLTEENQVL 56
Query: 72 YPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
+ S T K LL + P+ T C+SSQVGC++ CSF
Sbjct: 57 CLTVNKVFASSDQVTYKALLELHDGLK----IESVLMSPKPGLWTACISSQVGCAMKCSF 112
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C TGT L RNLT+EEI QVL R + D +++N+V MGMGEP
Sbjct: 113 CATGTMGLTRNLTSEEISDQVLFWRQFIAKNDIDTD-----------RLNNVVYMGMGEP 161
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
L N V S+ + R I++STSG + + + E+ V LA+SLHA ++
Sbjct: 162 LHNTKEVFSSIEELTAEDSFKIGSRHISVSTSGLLKGVKEMAEKFPQVNLALSLHAAKDE 221
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR+ ++PIN+ + LE + Y ++ ++ EYV+L+G N+ A+ L K LK +
Sbjct: 222 LRSSIMPINKAFDLEKIRTCLDEYIDSTHR-KVFIEYVLLEGENNELSHAVELSKFLKSL 280
Query: 310 P----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
NLI +N E+ S ++ F +K G S IR G DI ACGQL
Sbjct: 281 KRPELTHTNLIVYNETD-SEHKGSTKQKADQFRNHLKSKGLSVTIRKNLGRDIDGACGQL 339
Query: 366 KSLSK 370
+
Sbjct: 340 AVKEE 344
>gi|330685493|gb|EGG97146.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU121]
Length = 278
Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats.
Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 25/302 (8%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
++ L++ G + R QI++W+Y + + M+++S+++R LL +F++ V
Sbjct: 1 MQNWLIEHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLLKDNFAMTTLTTV 56
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
++ S DGT K+L IETV + + ++CV++QVGC + C+FC +
Sbjct: 57 VKQESRDGTIKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLG 111
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
L RNL A EI+ QVL + L + ++S IV+MG+GEP N+D
Sbjct: 112 GLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVIMGIGEPFENYDE 157
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ L I +D L+ R IT+STSG +P I EE + A+SLH +++R+ L+
Sbjct: 158 MMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHGAKDEVRSRLM 217
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
PINR Y +E L++A +Y +N RITFEY + G+ND A +L ++KG+ +NL
Sbjct: 218 PINRAYNVEKLMEAIEYYQEKTNR-RITFEYGLFGGVNDQLEHARDLAHLIKGLNCHVNL 276
Query: 316 IP 317
IP
Sbjct: 277 IP 278
>gi|301167567|emb|CBW27150.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 366
Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats.
Identities = 128/358 (35%), Positives = 193/358 (53%), Gaps = 21/358 (5%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
S EEL L + G Q+ +I++ +Y R +F+ + +S+ ++ H
Sbjct: 22 SFYNQSLEELSHTLHESGFKQKS----ADEIFRLVYKRFNPNFEAVDTLSRRTIDFISNH 77
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ P+IV + + D T K+L+ ++E+V IP + T+C+SSQVGC++
Sbjct: 78 YRFDLPKIVKVQNADDNTVKFLVEL-----ADGNQVESVLIPFAKKYTICLSSQVGCAMK 132
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC+TG Q L RNL A EI+ Q ++A L + + NIV MG
Sbjct: 133 CSFCFTGLQGLKRNLEASEIIGQYIVAYKWLRENRPEKIASP-----------NIVFMGQ 181
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL NFD VKK++ I + GL R+ITLST+G++P + R E + LA+SLH+
Sbjct: 182 GEPLHNFDQVKKAIEIFLTTEGLHLGFRQITLSTAGYLPGLERFSELPNINLALSLHSPI 241
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
++ RN L+P+N++Y LE L + L + IT+EY+++K +ND D L K L
Sbjct: 242 DEDRNKLIPLNKRYSLEKLFEKLDQ-IKLLKRQFITYEYLLIKDLNDRDEDITLLNKWLG 300
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
A IN+IPFN +PG Y + F ++R G + +RT +G DILAACGQL
Sbjct: 301 QRRAIINIIPFNEFPGAPYKRPLTSKVNEFKTKLERLGLTVKVRTTKGSDILAACGQL 358
>gi|256370982|ref|YP_003108806.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM
10331]
gi|256007566|gb|ACU53133.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM
10331]
Length = 353
Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats.
Identities = 111/339 (32%), Positives = 174/339 (51%), Gaps = 26/339 (7%)
Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
R Q++ +Y G R + +S + +R L H E E T K+ L
Sbjct: 22 RIEQLFHGLYHEGQR-LEAISTLPARMRAELASHLDPGLTERRREHADDGETVKFALE-- 78
Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
+ETV + R ++CVSSQ GC++ C FC TG VR+L EI+ Q+ +
Sbjct: 79 ---AADGALVETVVMQSARRISVCVSSQAGCAMGCRFCATGQAGFVRHLGVGEIVEQLAI 135
Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
A+ + R+++++V MGMGEPL N +++ G S
Sbjct: 136 AQRSVR----------------PRRLTHVVFMGMGEPLANASVAIEAIRRIRADFG--IS 177
Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
RR+T+ST G VP I R+ ++GV LA+SLHA ++ R+ LVP+NR+Y ++ ++DA +
Sbjct: 178 PRRVTVSTVGIVPGIRRLAHADLGVTLAVSLHAANDAARSDLVPMNRRYGIDAVLDAAQE 237
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
+ L+ RR+T E+ ++ G+ND RDA L + + A +NLIP NP PG + +D
Sbjct: 238 FSELT-GRRVTLEWALIAGVNDRDRDATELAGHARRLAAHVNLIPLNPTPGYPMVGTDPD 296
Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
+ F+ ++ G + +R RG I AACGQL + R
Sbjct: 297 GVARFARRLRSLGVNVTVRDTRGRSIDAACGQLAADVAR 335
>gi|225871755|ref|YP_002753209.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC
51196]
gi|225791340|gb|ACO31430.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC
51196]
Length = 396
Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 136/395 (34%), Positives = 194/395 (49%), Gaps = 57/395 (14%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
L G+ EEL EAL +P R Q+ +Y + + ++ + QE+R L
Sbjct: 25 RPLFGLSFEELSEALADFRLPPW----RLRQVRHALYRQWAASWSEVTTLPQELRESLEK 80
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--------------- 110
F+ P IV+ S DGT ++L+ +ETV++P
Sbjct: 81 AGFAPGLPGIVETFRSVDGTERYLI-----AGHDGQTVETVWMPGGDGGEAGDGSGSDGA 135
Query: 111 -------------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
R T+CVSSQ+GC++ C FC T ++RNLTA EI QV+
Sbjct: 136 GDDRPGEDSGEAAYQRATICVSSQIGCAVNCQFCLTARLGIIRNLTAGEIAGQVVAVLK- 194
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+GR N+V MGMGEP N+D ++ + SD +G+ S R+
Sbjct: 195 ------------RQQVEMGRDRINLVFMGMGEPFLNYDAFMDAVRLLSDEVGIPVS--RM 240
Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
T+STSG VP I R EE LAISL+A + +R ++PINRK+ + ++DA R P L
Sbjct: 241 TVSTSGIVPGILRFAEEPVRPKLAISLNAPDDIVREAVMPINRKWDIAEVLDAVRKVP-L 299
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDI 334
R+TFEYV+L G+ND P A + ++L+ +P K+NLI +NP P Y +D+
Sbjct: 300 RAKERVTFEYVLLGGVNDQPEHAETVARLLRRANLPLKVNLIVWNPGPDVPYTMPKAEDV 359
Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
F E + G + IR PRG DI AACGQLK
Sbjct: 360 AAFQEYLVGKGVPAYIRRPRGRDIYAACGQLKRTV 394
>gi|94968595|ref|YP_590643.1| hypothetical protein Acid345_1567 [Candidatus Koribacter versatilis
Ellin345]
gi|122986342|sp|Q1IRD1|RLMN_ACIBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|94550645|gb|ABF40569.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Koribacter
versatilis Ellin345]
Length = 346
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 125/361 (34%), Positives = 190/361 (52%), Gaps = 32/361 (8%)
Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYPEIVDEK 79
+ ++G P R+ Q+W+ +Y I + + +R L ++I +P +
Sbjct: 1 MERLGQPA----YRSRQLWQGLYRDRIASLDQFTTLPIPLREELKSSGWAIAFPFVQKRF 56
Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYI----------PEKSRGTLCVSSQVGCSLTCS 129
S DGT ++LL+F V + P R T+CVSSQVGC++ C
Sbjct: 57 TSTDGTVRYLLQFSDGQSVETVWMPEGDGGEQGDGSEDGPSYDRATICVSSQVGCAVDCQ 116
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC T L+RNL+A EI+ Q+L I N+V MG GE
Sbjct: 117 FCMTALLGLLRNLSAGEIVGQILAVLKDENVDVEKSRI-------------NLVFMGQGE 163
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248
P NFDN K++++ + + + R+T+STSG VP I G+ I LAISL+A ++
Sbjct: 164 PFLNFDNFVKAVTLLA--EAVGIPESRMTVSTSGIVPRIVDFGQLAIRPKLAISLNASND 221
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ R L+PI +K+ LE L+ A R +P L N R+TFEYV+L G+NDS ++A ++++L+G
Sbjct: 222 ESRRELMPITKKWTLEKLMSAAREFP-LRNRERMTFEYVLLGGVNDSEQNAREVVQLLRG 280
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ AK+NLI +NP P + D + + F + + +G + IR PRG DI AACGQLK
Sbjct: 281 LRAKVNLIAWNPGPEIPFSTPDPQHVEAFQQILIDAGIPTFIRKPRGRDIFAACGQLKRT 340
Query: 369 S 369
Sbjct: 341 E 341
>gi|302339631|ref|YP_003804837.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293]
gi|301636816|gb|ADK82243.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293]
Length = 356
Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats.
Identities = 113/362 (31%), Positives = 174/362 (48%), Gaps = 31/362 (8%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
G+ +E+ R Q+++ + +GI + +S +S R+ L++ S+
Sbjct: 17 GLFPDEICRVF------HLSPAFRGKQVFRAL-QQGISSWTQISTLSLNDRNRLSEEASL 69
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
+ DG+ K LL I G + + E R T C+SSQVGC++ C+F
Sbjct: 70 FSSVPTRFDEASDGSAKLLLEL----IDGRFVESVLLVDESGRKTACLSSQVGCAMRCAF 125
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C TGT L+RNL+ EIL Q ++ G+ ISNIV MGMGEP
Sbjct: 126 CRTGTMGLLRNLSTGEILEQYYHLKNRYGE------------------ISNIVFMGMGEP 167
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSND 249
L N V+K+++I + G R+IT+ST G V I + E LA SL
Sbjct: 168 LANLPPVQKAIAILNHPEGPGIGIRKITVSTCGIVDGIRSLSETALIPRLACSLVTADPK 227
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR L+P+++ PL L A Y S RIT E V+L GIN + A + +G+
Sbjct: 228 LRQRLMPVSKANPLPELKQALHFYQEKSKR-RITLECVLLGGINSAEEQAQGVADFARGL 286
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+N+IP+NP G ++ ++I+ + + ++++G + R RG +I ACGQL L
Sbjct: 287 SVLVNVIPWNPTEGLDFRPPSDQEIIRYRKRLEQAGIAVSRRYRRGSEINGACGQLAVLE 346
Query: 370 KR 371
R
Sbjct: 347 NR 348
>gi|309800813|ref|ZP_07694945.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium
JCVIHMP022]
gi|308222349|gb|EFO78629.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium
JCVIHMP022]
Length = 407
Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats.
Identities = 123/373 (32%), Positives = 180/373 (48%), Gaps = 37/373 (9%)
Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
K L M +E ++G+P R R Q+ Y D + SD R
Sbjct: 38 KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93
Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F V +++ + T K L R IE+V + +R TLC+SSQV
Sbjct: 94 AAEAFFPTLITEVTRQVADEGTTIKTLWRL-----FDGSLIESVLMRYPTRTTLCISSQV 148
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG L RN++A EI+ QV +A + D ++SNI
Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPG---------RLSNI 199
Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L
Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A
Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDITQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318
Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR-G 355
L K L A +N IP NP G ++ S +D F + + + G+ R PR G
Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQGGHRHLARHPRAG 378
Query: 356 -----LDILAACG 363
AACG
Sbjct: 379 YRWCLR---AACG 388
>gi|320106559|ref|YP_004182149.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4]
gi|319925080|gb|ADV82155.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4]
Length = 420
Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats.
Identities = 125/411 (30%), Positives = 184/411 (44%), Gaps = 65/411 (15%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L GM EL E + G R Q+W +Y + + ++ + +R L
Sbjct: 23 QKIALFGMALPELIERMGAWG----EKPYRARQVWDALYKQRVAALDEITVLPLALRERL 78
Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPAR---------------------------- 95
+ I PE+V S DGT ++L+R
Sbjct: 79 ATEGVEIGLPEMVQTATSVDGTERYLMRMVDGETVETVWMPDGDGGERGDGSEAAVEESD 138
Query: 96 ---------------CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
+ R T+C+SSQVGC++ C FC T + R
Sbjct: 139 EVVTADEAVDKTNGYKKPDKRNWGALAEKGYRRATICISSQVGCAVNCQFCLTAKLGIKR 198
Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
NLTA EI QV +G+ N+V MGMGEP N+D S
Sbjct: 199 NLTAGEIAGQVAAV-------------LNRHSVKMGKDRINLVFMGMGEPFLNYDAFMDS 245
Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259
+ + G+ R+T+STSG P+I R E LA+SL+A ++ +R ++PI +
Sbjct: 246 VRLLV--EGVGIPDSRMTVSTSGIEPSIRRFATETVRPKLALSLNASNDAVRTEIMPITK 303
Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
K+ + ML+DA + P + +TFEYVML G+ND P+ A ++ +LKG+ AK+NLI +N
Sbjct: 304 KWNIAMLLDAVKTIP-MGKRDWVTFEYVMLGGVNDQPQHAREVLALLKGMHAKVNLIVWN 362
Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
P PG Y D + F + + G + IR PRG DI AACGQLK +
Sbjct: 363 PGPGIAYSQPDPDAVAVFQKMMIDGGMPTYIRRPRGRDIYAACGQLKRTVQ 413
>gi|325971942|ref|YP_004248133.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy]
gi|324027180|gb|ADY13939.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy]
Length = 361
Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 172/361 (47%), Gaps = 31/361 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
SL G+ E + E L QI+ W+ V+G+ F+ M+D+ + R L
Sbjct: 10 SLYGLEAETIAEIL------SLSKSFYAKQIFNWL-VKGVYSFEAMTDLPKAERERLASL 62
Query: 68 FS-IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
S I G K +R G V + + +K R T C+SSQVGC+
Sbjct: 63 MSSACSSTIHTCDTDETGATKMGVRLHD----GKVIECVLLVDKKGRHTACLSSQVGCAQ 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C+FC TGT L+RNL+AEEI+ Q + + + I++IV MG
Sbjct: 119 GCTFCKTGTMGLLRNLSAEEIIEQYIHL-----------------LSVSKQPITHIVYMG 161
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
MGEPL N V +S+ + + S RRIT+ST G VP I ++ E+ V LA+SL +
Sbjct: 162 MGEPLANIAAVTRSIRYFHNPKTFNLSLRRITVSTCGIVPGILKLAEQKLPVKLAVSLVS 221
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
N LR+ ++P+N+ + + L A HY L +R T EY +L N A L
Sbjct: 222 ADNRLRDRIMPVNKAWDIMALKKALLHYQRL-GGKRFTIEYCLLGNTNTDETSAKKLASY 280
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+K + +NLIP+NP G Y +++I F+ + R + R RG +I ACGQL
Sbjct: 281 VKDLDVIVNLIPWNPAEGLPYKTPTEEEIDYFALQLDRLHVNYTRRRSRGREINGACGQL 340
Query: 366 K 366
Sbjct: 341 A 341
>gi|294056045|ref|YP_003549703.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
45221]
gi|293615378|gb|ADE55533.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
45221]
Length = 351
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 115/374 (30%), Positives = 185/374 (49%), Gaps = 32/374 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI----RDFQGMSDISQEVRH 62
+L G+ + LE+ L + H ++ + + I + + + R
Sbjct: 3 TTLEGLRFDALEQRLAAAEVNPVH----AKAVFNAVQRKLIEGDLSSVE--TLLPPVQRW 56
Query: 63 LLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L + + + + + T K+LL+ E+E+V + R T C+SS
Sbjct: 57 LAAEDAPVRCALEQTAETPSADGYTHKYLLKL-----ADGAEVESVRMGFPGRFTACLSS 111
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TG R L+A EI+ Q L L + G ++
Sbjct: 112 QVGCAMGCVFCATGQMGFSRQLSAGEIVAQALHVERRLRE-------------DFGERLR 158
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
NIVMMGMGEPL NF+ + +L I +D+ GL+ R+ +ST G+VP I ++ + L
Sbjct: 159 NIVMMGMGEPLHNFEPLMDALDILTDTRGLNIGPARVAISTVGYVPGIRKLMQHAKRYSL 218
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH S++ R L+PIN+++PL L++ CR Y + A R+ F + ++KG+NDS A
Sbjct: 219 AVSLHGASDEERGKLIPINKRWPLAELLETCREYSQVKKA-RVFFAWTLIKGVNDSDDHA 277
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L +L+G+ A +NLIP NP ++ + F E I+ +G S +R RG+D+
Sbjct: 278 QRLAALLQGMDAHVNLIPLNPTDDFSGEAPEEARVRAFQEIIQAAGLPSTVRQRRGIDVA 337
Query: 360 AACGQLKSLSKRIP 373
A CGQLK+
Sbjct: 338 AGCGQLKAKKLVRR 351
>gi|313888523|ref|ZP_07822190.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845552|gb|EFR32946.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 333
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 110/352 (31%), Positives = 169/352 (48%), Gaps = 27/352 (7%)
Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80
++ R +Q++ + + + D + S++S + L+ I EI
Sbjct: 5 CANFFEDRKEKAFRGTQLFTFFHDKKRYDVEN-SNLSAKAISLIKDE-EINKIEIFKSFD 62
Query: 81 SC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
S D TRK L R IE V + K + CVS+QVGC + C FC + L+
Sbjct: 63 SDLDETRKMLFRLK-----DGNLIEGVLMEYKHGYSQCVSTQVGCRMGCDFCASTKSGLL 117
Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
RNL+A E+L QV + KISN ++MG GEPL NFD V +
Sbjct: 118 RNLSAGEMLGQVYEIEN-----------------KYNIKISNFILMGSGEPLDNFDEVIR 160
Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
+ + D G + S R IT+ST G I + + + + LA+SLH ++ R++L+PIN
Sbjct: 161 FIKLLHDEKGHNTSYRNITISTCGVADKIYDLADLNLPINLAVSLHQTNDKDRSVLMPIN 220
Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
R++ L L + +Y +N RITFEY M+K ND ++ L K + INLIP
Sbjct: 221 RRFNLVELKKSLEYYVKKTN-NRITFEYTMIKNQNDGIKNIDELYNFAKNLKCHINLIPL 279
Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
NP + + +I F +++ G++ IR G DI A+CGQL+ +
Sbjct: 280 NPIEEFDEKRPSKAEINDFKNKLEKKGFNVTIRRELGSDISASCGQLRRKIE 331
>gi|330837064|ref|YP_004411705.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374]
gi|329748967|gb|AEC02323.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374]
Length = 359
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 123/362 (33%), Positives = 170/362 (46%), Gaps = 33/362 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
SL G+ ++++ L R QI W+ RG F GMS++S R L +
Sbjct: 12 PSLYGLSVQDIQTVL------SLDKPFRARQIRSWL-ARGTTSFTGMSNLSLLERTRLTE 64
Query: 67 HFS-IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ I+ E+++EK G K +R V + + + R T C+S QVGC+
Sbjct: 65 KYPHILTSEVIEEKTDRTGATKLGIRLYDGL----VVECVLLVDQDGRKTACLSCQVGCA 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TGT L RNL A EI+ Q + S+IV M
Sbjct: 121 MGCVFCRTGTMGLARNLHAYEIVEQFVHLMKY-------------------GTPSHIVYM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N V S+ + RRIT+ST G VP I ++ E GV LAISL
Sbjct: 162 GMGEPLANTKEVFSSVLTLNSPDWFDIGIRRITISTCGIVPGILQLAESGLGVKLAISLV 221
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + LR L+P+NR +PL L + Y RITFEY ML G+N A NL
Sbjct: 222 AADDQLRTRLMPVNRSFPLIRLKETLVTYQKKEKK-RITFEYCMLGGVNTDETAARNLAH 280
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+KG+ A +NLIP+NP P + +++ +F ++R G R RG + ACGQ
Sbjct: 281 FMKGLEAIVNLIPWNPAPDLPWQTPSNREMDSFVSTLQRLGVPCTRRFSRGRGVDGACGQ 340
Query: 365 LK 366
L
Sbjct: 341 LA 342
>gi|224107843|ref|XP_002314621.1| predicted protein [Populus trichocarpa]
gi|222863661|gb|EEF00792.1| predicted protein [Populus trichocarpa]
Length = 369
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 127/368 (34%), Positives = 189/368 (51%), Gaps = 43/368 (11%)
Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSD---------ISQEVRHLLNQH 67
E + G M +WK +Y G + ++++ +L +H
Sbjct: 1 EWVQSYGFRPGQAMM----LWKRLYGNGIWAHHVDELQGILLSHPIYCLNKDFVKMLGEH 56
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + + DGTRK L R V V ++ R T+CVSSQVGC++
Sbjct: 57 AKFKALSLENILTASDGTRKILFRLDDGL----VIETVVIPCDRGRTTVCVSSQVGCAMN 112
Query: 128 CSFCYTGTQK----------LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
C FC+TG Q L R+L+ EI+ Q + A+ LL + G
Sbjct: 113 CQFCFTGRQANIFHFGTLMGLKRHLSTAEIIEQAVFAQRLLTNEVG-------------- 158
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+N+V MGMGEPL N D+V K+ I GL FS R++T+STSG VP + R E
Sbjct: 159 PFTNVVFMGMGEPLQNIDSVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKRFLHESNC 218
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SL+A ++++RN ++PINRKY L +L+ R GL N+ ++ FEYVML+G+NDS
Sbjct: 219 ALAVSLNATTDEVRNWIMPINRKYNLGLLLQTLREELGLKNSYKVLFEYVMLEGVNDSDD 278
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
DA LI +++GIP KINLI FNP G ++ + + ++ F + + +R +G D
Sbjct: 279 DAYRLIDLVQGIPCKINLIQFNPHCGSQFRPTSTEKMIKFRNILAEAKCVVFMRYSKGDD 338
Query: 358 ILAACGQL 365
+AACGQL
Sbjct: 339 QMAACGQL 346
>gi|108803293|ref|YP_643230.1| hypothetical protein Rxyl_0444 [Rubrobacter xylanophilus DSM 9941]
gi|122976140|sp|Q1AYW0|RLMN_RUBXD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|108764536|gb|ABG03418.1| conserved hypothetical protein [Rubrobacter xylanophilus DSM 9941]
Length = 355
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats.
Identities = 115/364 (31%), Positives = 176/364 (48%), Gaps = 28/364 (7%)
Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
E+EE L + G P R Q++ + + ++ + + +R L
Sbjct: 19 LPEVEEVLAERGEP----PYRLRQVYAALAGSLASGWDEVASLPKGLREELAGRVPASVL 74
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
E+ + DGTRK+L IETV IPE+SR T+C+S+QVGC + C+FC T
Sbjct: 75 ELRRISRARDGTRKYLFFTR-----DGHAIETVMIPERSRRTVCISTQVGCPMACTFCAT 129
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G + RNL A EI QV + +++N+V+MGMGEP N
Sbjct: 130 GLLGIKRNLKAREIAEQVFAVARDIA----------------PERVTNVVVMGMGEPFLN 173
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
+ ++L + +D G + + R I +STSG V I R +E LAISLH + R
Sbjct: 174 YRETLRALRVLNDRRGFNLAARHIAVSTSGLVDKIRRFADEPEQFHLAISLHTPFEEERR 233
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
L+P+ ++P+ L++A R+Y + R++ FEY +L G+ND R A L ++L
Sbjct: 234 RLMPVAARHPIPELMNAARYYVERT-RRKLFFEYTLLAGVNDRMRHAEALAELLDHPLYH 292
Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
+NL+ FN W + + + F + G S+ +R RG DI AACGQL + R
Sbjct: 293 LNLLRFN-WTDTGFSATSARRAKEFLRRARELGLSATLRPSRGQDIEAACGQLAARDARS 351
Query: 373 PKVP 376
P
Sbjct: 352 PTAR 355
>gi|145347191|ref|XP_001418058.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578286|gb|ABO96351.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 369
Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats.
Identities = 121/378 (32%), Positives = 181/378 (47%), Gaps = 35/378 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV-RGIRDFQGMSDISQEVRHLL- 64
+ L+GM L+ ++ R +QI + +Y R R + S I +E+R L
Sbjct: 11 KDLLGMSARALKSIVVD---ECGQPLYRATQIREHLYGARRCRRIEDFSLIPREMRDALV 67
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-----KSRGTLCVS 119
+ + +S GT K LR R + V I ++R T CVS
Sbjct: 68 AGGYRTGRLAVESASVSGCGTGKVSLRVGEREVIEAVGIPDASCWRASAEAENRLTACVS 127
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC++ C+FC TG Q RNLT EI QV+ L G+++
Sbjct: 128 SQVGCAMKCTFCATGMQGYKRNLTPAEITAQVIELEEL-----------------YGKRV 170
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
S +V MGMGEP+ N +V +++ ++ +G+ R IT+ST G ++ ++ +E +
Sbjct: 171 SQVVFMGMGEPMLNIKSVVQAIRCLNEDVGIGG--RHITVSTVGIPNSLKKLAKEKLAIT 228
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LAISLHA R +VP + YP+E L++ R Y + RR+TFEY +L G+NDSP
Sbjct: 229 LAISLHAPDQHTRAKIVPSAKYYPMEDLLNDARAYFKET-GRRVTFEYTLLAGVNDSPSQ 287
Query: 299 ALNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A L ++LK A +N+IP+N G + I F ++ G + IR RG
Sbjct: 288 AKALSRMLKRKFGTGAHVNIIPWNNIDGINHTRPSGNAIHRFCAQLEG-GVTHTIRRTRG 346
Query: 356 LDILAACGQLKSLSKRIP 373
LD AACG L +R
Sbjct: 347 LDTNAACGMLTGAFERRT 364
>gi|257458205|ref|ZP_05623359.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580]
gi|257444499|gb|EEV19588.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580]
Length = 348
Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats.
Identities = 111/374 (29%), Positives = 168/374 (44%), Gaps = 36/374 (9%)
Query: 1 MNFLKK----ESLI-GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSD 55
M ++ K ++ GM+ EE+ R ++ QI++WI RG F M++
Sbjct: 1 MGYIDKNVADTNVFSGMLPEEIATVC------NLPQRFQSVQIFQWI-ARGCTSFAEMTN 53
Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115
+ + R L ++ DGT K + + + R T
Sbjct: 54 LPLKERERLASVYTPRNTVCETVLKDPDGTVKLGIGLYDGSS----IETVLLFDKHERRT 109
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
CVS QVGC + C+FC TG +RNL+ EI+ Q L + G
Sbjct: 110 ACVSCQVGCPMGCTFCQTGQLGCLRNLSPNEIVEQFLHLEKICG---------------- 153
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
K+ NIV MGMGEPL N D++ K++++ + G + S RRITLSTSG I + E
Sbjct: 154 --KLDNIVFMGMGEPLLNLDSIAKTIAVLTHPKGRNLSHRRITLSTSGICKGIYELAERQ 211
Query: 236 -GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ LA+SL LR L+P+ + PL L A R++ ++ R+T E +LK +N
Sbjct: 212 LDIRLAVSLTTADEALRTTLMPVTKANPLSELKKAIRYFNDKTDK-RVTLELALLKDVNT 270
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
S + A + +G+ INLIP+NP Y +I +F + + +R R
Sbjct: 271 SYKAAQQVRDFAEGLNVHINLIPWNPVQQLPYSTPSDSEIRSFYNYLTAENLNVTVRQKR 330
Query: 355 GLDILAACGQLKSL 368
G I ACGQL
Sbjct: 331 GRTIGGACGQLGKK 344
>gi|330975900|gb|EGH75966.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 261
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 124/270 (45%), Positives = 169/270 (62%), Gaps = 19/270 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG 275
++ LRN LVP+N+KYPL++L+++CR Y
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMS 257
>gi|320538490|ref|ZP_08038353.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421]
gi|320144661|gb|EFW36414.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421]
Length = 356
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 172/362 (47%), Gaps = 31/362 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L G++ EE+ + + QI++WI G+ F M+++S R L
Sbjct: 18 LTGLLPEEIYRVC------ALPQKFQGEQIFRWI-ASGVESFAEMTNLSLSERERLANSA 70
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I ++ DGT K + + I R T CVS QVGC ++C
Sbjct: 71 VIRGSKLAVILKDPDGTIKLGIDLYDSQR----VETVLLIDRAGRKTACVSCQVGCPMSC 126
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
SFC TG RNLTA EI+ Q L + G K+ NIV MGMG
Sbjct: 127 SFCQTGQLGFTRNLTAAEIVEQFLHLEKIAG------------------KLDNIVFMGMG 168
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
EP+ N ++K++++ + G + S RRITLSTSG I +G + LA+SL +
Sbjct: 169 EPMLNLPAIRKAIAVLTHKKGRALSPRRITLSTSGICKGIYELGSLGPDIRLAVSLTTAN 228
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+PI ++ LE L A + +R+T E +++GIN +P A +I+ K
Sbjct: 229 TALRTKLMPITKQNSLEDLKKAI-AFFNEKTKKRVTLELALMRGINTAPSFAREVIEFSK 287
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G+ INLIP+NP +Y +K+++ F ++++G +R RG I ACGQL
Sbjct: 288 GLNVHINLIPWNPVESLDYASPTEKELIGFESLLRKAGIPVTLRHRRGKTICGACGQLGK 347
Query: 368 LS 369
+
Sbjct: 348 KN 349
>gi|222619965|gb|EEE56097.1| hypothetical protein OsJ_04941 [Oryza sativa Japonica Group]
Length = 363
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 104/369 (28%), Positives = 157/369 (42%), Gaps = 60/369 (16%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN-QH 67
L+G+ +L + + +G R Q+ +Y + Q S + + R L
Sbjct: 36 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + + + DGT K LL+ + V I SR T CVSSQVGC L
Sbjct: 92 WKVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDKGPSRLTACVSSQVGCPLR 151
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
CSFC TG RNL A EI+ QVL + +++N+V MGM
Sbjct: 152 CSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNVVFMGM 194
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
GEP+ N +V ++ + L +R IT+ST G I ++ ++ LA+SLHA
Sbjct: 195 GEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAVSLHAP 252
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ LR +VP GIND+ A L ++L
Sbjct: 253 NQKLRETIVPT---------------------------------GINDAKEHAEELAELL 279
Query: 307 KGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+NLIP+NP G EY +K + F + ++ + +R RGLD AACGQ
Sbjct: 280 HTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDANAACGQ 339
Query: 365 LKSLSKRIP 373
L++ ++ P
Sbjct: 340 LRNEFQKNP 348
>gi|313639429|gb|EFS04292.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171]
Length = 281
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 109/287 (37%), Positives = 168/287 (58%), Gaps = 17/287 (5%)
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
IETV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + L
Sbjct: 1 DGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL 60
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
++ ++S++V+MG+GEP N+DNV L + + GL+ R IT
Sbjct: 61 D------------GRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHIT 108
Query: 219 LSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+STSG P I E V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +
Sbjct: 109 VSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKT 168
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDI 334
N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D+
Sbjct: 169 NR-RITFEYIMLKGVNDHKKEALELAGLLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDV 227
Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
+ F + +K++G + IR G DI AACGQL+S + V + Q
Sbjct: 228 LAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQ 274
>gi|313634805|gb|EFS01235.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067]
Length = 281
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 108/287 (37%), Positives = 168/287 (58%), Gaps = 17/287 (5%)
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
IETV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + L
Sbjct: 1 DGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL 60
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
++ ++S++V+MG+GEP N+DNV L + + GL+ R IT
Sbjct: 61 D------------GRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHIT 108
Query: 219 LSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+STSG P I E V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +
Sbjct: 109 VSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKT 168
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDI 334
N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D+
Sbjct: 169 NR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDV 227
Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
+ F + +K++G + IR G DI AACGQL+S + + + Q
Sbjct: 228 LAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGIRERMKQ 274
>gi|308810124|ref|XP_003082371.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri]
gi|116060839|emb|CAL57317.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri]
Length = 602
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 134/365 (36%), Positives = 198/365 (54%), Gaps = 28/365 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD-FQGMSDISQEVRHLLNQH 67
L GM R EL L G R ++ +Y + F+G ++ L +
Sbjct: 85 LKGMRRSELARWLEATGERAT----RADGLFATMYRDLSMNAFEGDGRFGEKFASRLERV 140
Query: 68 FSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++ + + + + DGTRK +E+V IP R T+CVSSQ+GC++
Sbjct: 141 ATMDGDLRLGEVRRASDGTRKVTYALAD---DSGGIVESVLIPSGRRTTVCVSSQLGCAM 197
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC+T T L +NL+A +I+ QV+ AR + + G ++SN+V MG
Sbjct: 198 NCQFCFTATMGLRKNLSAAQIVEQVVRARRMCDE---------------GEEVSNVVFMG 242
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MGEPL N D V K++ I D GL+FS+ ++T+STSG VP + R E LA+SL+A
Sbjct: 243 MGEPLHNIDEVLKAVDILLDPRGLAFSRNKVTVSTSGLVPQMERFLTESEASLAVSLNAT 302
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGINDSPRDALNL 302
++ +RN ++PINRKY L+ L+ R ++ R + FEY+ML G+NDS DA L
Sbjct: 303 TDYIRNWIMPINRKYNLDSLLGLLRREFPRTDLGRHQRQVFFEYIMLAGVNDSDEDADRL 362
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
I+I K +P KINLI FN G E+ CSDQ+ I F + + +G + IR RG + ++AC
Sbjct: 363 IEIAKSLPCKINLIYFNTHDGAEFKCSDQERIAAFRQRVSDAGVTCTIRVSRGDEEMSAC 422
Query: 363 GQLKS 367
GQL S
Sbjct: 423 GQLGS 427
>gi|187251578|ref|YP_001876060.1| radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191]
gi|186971738|gb|ACC98723.1| Radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191]
Length = 343
Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 112/367 (30%), Positives = 178/367 (48%), Gaps = 29/367 (7%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
M E++++ + + G P R +Q+ +Y GI D+ + ++++ L +F+I+
Sbjct: 1 MNFEKIKDFIKENGFPA----YRIAQVKDAVYKNGITDWNKAVALPADLKNKLKDNFNIL 56
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
+ S K + ++IETV + T+CVS+QVGC + CSFC
Sbjct: 57 SFTAAKMQFSD----KDRTAKALLKLEDGLKIETVLMRMGDVWTVCVSTQVGCPVGCSFC 112
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
TG + R+LT EEI QVL S + ++I+N+V MGMGEPL
Sbjct: 113 STGKMRFKRDLTDEEISDQVLFWLSYIKQEKLA------------QRINNVVFMGMGEPL 160
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250
N+ N K++ S+ L R I++STSG + + V LA+SLH+ +D
Sbjct: 161 FNYLNTVKAVKEISNPDRLGIGMRHISISTSGVADKFHNLAVDLPQVNLALSLHSADDDE 220
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
RN +VP+NRK+ LE L A Y ++ + + EY +++G+ND P L K + G+
Sbjct: 221 RNKIVPLNRKFNLETLQKALTEYIAMTGRQ-VFIEYTVVEGVNDRPEHIRLLGKWISGVK 279
Query: 311 ----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+NLI N G + +K + F++ ++ S IR G DILAACGQL
Sbjct: 280 DNYLLHVNLIACNMGKG---KTTSEKQVKLFAKGLQGLHISVTIRKSLGNDILAACGQLA 336
Query: 367 SLSKRIP 373
+
Sbjct: 337 VKESKEK 343
>gi|167768548|ref|ZP_02440601.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1]
gi|167710072|gb|EDS20651.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1]
Length = 250
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 97/267 (36%), Positives = 149/267 (55%), Gaps = 19/267 (7%)
Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
+ K ++C+SSQ GC + C FC + L RNLT E+L Q+ +
Sbjct: 1 MKYKHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQR----------- 49
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
++SN+VMMG GEP+ N+DNV + L + + GL+ S+R IT+ST G VP
Sbjct: 50 ------DTEERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPK 103
Query: 228 IARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
I + ++ + LAISLH+ ++++R L+PI KY ++ L+DAC +Y +N R+TFEY
Sbjct: 104 IKELAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEY 162
Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
++ G+ND P A L LKG P +NLIP NP ++ S K ++ F + ++++
Sbjct: 163 SLVAGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRV 222
Query: 347 SSPIRTPRGLDILAACGQLKSLSKRIP 373
+ IR G DI AACGQL+ +
Sbjct: 223 NVTIRREMGADINAACGQLRRKKLQSR 249
>gi|322806773|emb|CBZ04342.1| ribosomal RNA large subunit methyltransferase N [Clostridium
botulinum H04402 065]
Length = 272
Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 110/287 (38%), Positives = 161/287 (56%), Gaps = 24/287 (8%)
Query: 82 CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
T K+L + IE+V + K ++CVS+QVGC + C FC + ++RN
Sbjct: 4 DKNTYKFLFEYK-----DGNIIESVVMKYKHGNSICVSTQVGCRMGCKFCASTLDGVIRN 58
Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
LT+ EIL Q++ A+ +G+ +ISN+V+MG GEPL NF+NV K L
Sbjct: 59 LTSGEILSQIMAAQKEIGE-----------------RISNVVLMGSGEPLDNFENVTKFL 101
Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK 260
+ + L+ +R ITLST G VP I + ++ + LAISLH+ + LR ++PI K
Sbjct: 102 DLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHSPEDLLRKEMMPIANK 161
Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
Y ++ L++AC +Y +N RITFEY ++KG NDS ++A L +LKG +NLIP N
Sbjct: 162 YSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSIVLKGKLCHVNLIPVNE 220
Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
Y S K+I +F +K +G + IR G DI AACGQL+
Sbjct: 221 IKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQLRR 267
>gi|299138881|ref|ZP_07032058.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8]
gi|298599035|gb|EFI55196.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8]
Length = 406
Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 123/413 (29%), Positives = 190/413 (46%), Gaps = 68/413 (16%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
L G EL E + +G R Q+++ +Y + + + ++ +SQE+R L ++
Sbjct: 4 LFGKTLPELTELMAGLG----QKPYRARQVFEALYKQRVGLVEDVTTLSQELRDRLTSEG 59
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPAR-------------------------------- 95
F+I PEI S DGT ++L+R
Sbjct: 60 FAIGLPEIAQTAKSVDGTERYLMRMADGETVETVWMPDGDGGERGDGSEAAEEESAEVVV 119
Query: 96 --------------CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
T+ R T+C+SSQVGC++ C FC T + RN
Sbjct: 120 AEEAVDGGYWSRRGNGRDRSNFGTLAEQGFRRATICISSQVGCAVNCQFCLTAKLGIKRN 179
Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
LTA EI QV +G+ N+V MGMGEP N++ +S+
Sbjct: 180 LTAGEIAGQVAAV-------------LNRHRIQIGKDRINLVFMGMGEPFLNYEQFMQSV 226
Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK 260
+ G+ + R+T+STSG +P I +E + LA+SL+A ++ +R ++PI RK
Sbjct: 227 RVLV--EGIGIPESRMTVSTSGILPGIEAFAKETMRPKLALSLNASNDVVRERIMPITRK 284
Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
+ + L++A + P L +TFEYV+L +ND P A ++++L GI AK+NLI +NP
Sbjct: 285 WNIAALLEAVQKIP-LRTREWVTFEYVLLGEVNDQPEHAREVLELLDGIRAKVNLIVWNP 343
Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
PG +Y D+ F + + G ++ IR PRG DI AACGQLK
Sbjct: 344 GPGIDYHQPKPADVAVFQKMLIEGGIATYIRRPRGRDIYAACGQLKRTVAEEK 396
>gi|38175091|dbj|BAD01056.1| hypothetical protein [Pseudomonas putida]
Length = 284
Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 127/270 (47%), Positives = 166/270 (61%), Gaps = 19/270 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L
Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+
Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+++LRN LVPIN+KYPL+ML+++C Y
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMS 257
>gi|317498697|ref|ZP_07956989.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA]
gi|316894039|gb|EFV16229.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA]
Length = 272
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 99/278 (35%), Positives = 155/278 (55%), Gaps = 20/278 (7%)
Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
+ K ++C+SSQ GC + C FC + L RNLT E+L Q+ +
Sbjct: 1 MKYKHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQR----------- 49
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
++SN+VMMG GEP+ N+DNV + L + + GL+ S+R IT+ST G VP
Sbjct: 50 ------DTEERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPK 103
Query: 228 IARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
I + ++ + LAISLH+ ++++R L+PI KY ++ L+DAC +Y +N R+TFEY
Sbjct: 104 IKELAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEY 162
Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
++ G+ND P A L LKG P +NLIP NP ++ S K ++ F + ++++
Sbjct: 163 SLVAGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRV 222
Query: 347 SSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQIT 383
+ IR G DI AACGQL+ + + K R ++ +
Sbjct: 223 NVTIRREMGADINAACGQLRRKNCSQDCKGERYAIRRS 260
>gi|255994247|ref|ZP_05427382.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989]
gi|255993915|gb|EEU04004.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989]
Length = 342
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 115/369 (31%), Positives = 181/369 (49%), Gaps = 35/369 (9%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+SL GM +E+E +L +G R QI + + G+ + IS++ R L+
Sbjct: 2 KSLAGMNLKEIESVVLSLG----EKAYRAKQILEAV-NNGVDSIDKIHTISKDFRAKLSN 56
Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++I + + +S + K+LL+ IE + + K +LC+SSQ GC
Sbjct: 57 KYTISSITVEKKLVSKRDGSIKYLLKTS-----DGKFIEAMSMVYKHGVSLCISSQAGCR 111
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G + L RNL+A E++ QVL+ + KIS IV+M
Sbjct: 112 MGCTFCSSGKEGLERNLSAFEMIEQVLILKRGFD------------------KISGIVVM 153
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
G GEP N+D +KK L ++ L KR IT+ST G I + ++ + LA SLH
Sbjct: 154 GTGEPFDNYDELKKFLKRITNEEFLRIGKRHITVSTCGIEEGIKKFSKDFRSINLAFSLH 213
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A SND+R ++P N+ +++ A H RR+TFEY+++KG+NDS + L +
Sbjct: 214 AASNDIRKKIMPGNKLSVDDIIGLASEH--AKITRRRVTFEYILIKGVNDSMAECELLCR 271
Query: 305 ILKGIPAKINLIPFN--PWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
LKGI +NLI N + G + D K + + +++ IR G DI A
Sbjct: 272 KLKGINCLVNLIRLNGSSYEGDNRFSSPDMKTVKQWQNELEKRHIQVTIRRTIGEDIQGA 331
Query: 362 CGQLKSLSK 370
CGQL+
Sbjct: 332 CGQLRLRKD 340
>gi|261407206|ref|YP_003243447.1| chloramphenicol/florfenicol resistance protein [Paenibacillus sp.
Y412MC10]
gi|261283669|gb|ACX65640.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
Length = 346
Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats.
Identities = 110/375 (29%), Positives = 174/375 (46%), Gaps = 46/375 (12%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M +L K E++ + L + P R SQI + I+ I +F+ M+++ + V
Sbjct: 1 MKYLSK-------YEKIRKILSALNQPN----YRYSQITEAIFKNKIGNFEAMNNLPKPV 49
Query: 61 RHLLNQHFSIIYPEIV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCV 118
R+ L + I + + K L P G IE+V + ++ + C+
Sbjct: 50 RNELIKELGNNVLSITPKMEQKSNQVSKILFAIP-----GDEYIESVRLSYQTGWESYCI 104
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQ GC C+FC TGT L RNLT +EI Q+L
Sbjct: 105 SSQCGCGFGCTFCATGTLGLKRNLTTDEITDQLLY------------------FTLNNHP 146
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
+ ++ MGMGE L N V +L + +D RRIT+ST G +P + ++ +E +
Sbjct: 147 LDSVSFMGMGEALANP-YVFDALHLLTDPKLFGLGHRRITVSTIGLLPGVKKLTKEFPQI 205
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
L SLH+ +D R+ L+PIN +PLE ++ + + ++ Y++L+GINDS +
Sbjct: 206 NLTFSLHSPFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKR-KVYIAYILLRGINDSTK 264
Query: 298 DALNLIKILKGIPA-----KINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPI 350
A + +L+ + +NLIP+N ++ SDQ I F +K G +
Sbjct: 265 HAKAVADLLRERGSWEHLYHVNLIPYNSTDATSQSFVESDQNSINMFLRILKSKGIHVTV 324
Query: 351 RTPRGLDILAACGQL 365
RT G DI AACGQL
Sbjct: 325 RTQFGSDINAACGQL 339
>gi|255077056|ref|XP_002502181.1| predicted protein [Micromonas sp. RCC299]
gi|226517446|gb|ACO63439.1| predicted protein [Micromonas sp. RCC299]
Length = 395
Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 178/372 (47%), Gaps = 32/372 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLL-NQ 66
L+G+ +EL E + +PQ R QI IY +GM + R L +
Sbjct: 42 LLGLGLDELRELSAEFALPQW----RGQQIHDAIYGEMRKTTIEGMQQLPLGFRQALVDA 97
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCS 125
+ E V+ DGTRK L I V I + R T+CVSSQVGC+
Sbjct: 98 GYETGRREPVEIVSDEDGTRKALFELRCGSIIEAVGIPVERAKGRRRRFTVCVSSQVGCA 157
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC TG Q RNLT++EI+ QVL + GR+ +N+VMM
Sbjct: 158 MRCSFCATGRQGFRRNLTSDEIVNQVLSMEDVF-----------------GRRATNVVMM 200
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
GMGEPL N V ++ + +G+ R T+ST G ++++ LA+SLH
Sbjct: 201 GMGEPLLNLREVLRAHRCLNRDVGIGG--RYFTISTVGVPNALSKLAAHRLQATLAVSLH 258
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +LR L+P + +PL+ L++ R Y + RR+TFEY +L G NDS A L K
Sbjct: 259 APTQELRERLIPSAKAFPLDALLEEVRMY-RKATGRRVTFEYTLLAGENDSEDHARALAK 317
Query: 305 ILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLDILA 360
+L+ INL+P+NP G + + + F + + G S +R RGL A
Sbjct: 318 LLRSKVGRGCHINLLPWNPVAGANHQRPSKSAVNRFCDVLAAERGVSYSVRATRGLVAQA 377
Query: 361 ACGQLKSLSKRI 372
ACGQL +R
Sbjct: 378 ACGQLTGAFERK 389
>gi|196234588|ref|ZP_03133408.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
gi|196221334|gb|EDY15884.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
Length = 364
Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats.
Identities = 122/384 (31%), Positives = 178/384 (46%), Gaps = 41/384 (10%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
SL + EEL + G H R + +W+ G + M + +R L
Sbjct: 15 SLSDLSAEELALWMEGEGFKGGHA-WRV--LREWLGANGGGERDSMR-LPAGLRERLRAT 70
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCS 125
F + ++S DGT K LLR G +E+V +P+ R C+SSQVGC+
Sbjct: 71 FPQEAAVLARRQVSEDGTAKLLLRM-----GDGRTVESVLMPDYHPERAAGCISSQVGCA 125
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC T RNLT+ EI+ Q L R + GR + IV M
Sbjct: 126 MGCDFCATTQTGFERNLTSGEIVEQFLQLRRE--------------AVAAGRVLRTIVFM 171
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244
GMGEP+ N NV ++ D +F R+IT+ST G VP I + ++GV LAISLH
Sbjct: 172 GMGEPMLNLRNVLAAVRRIGDPKLGAFGWRQITISTVGIVPGIDELRAADLGVQLAISLH 231
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + R L+P+ R++ +E ++ A Y S T +Y +L G+NDS A +L +
Sbjct: 232 APDDATRADLLPMGRRFAVEDVLAAADRYQASSGRV-TTIQYCLLDGVNDSLAQARDLSR 290
Query: 305 ILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+L G +NL+ +NP G Y S + F ++ G + +R RG DI A
Sbjct: 291 LLAGRTMHVNLLRYNPTGLSLRGRTYAPSSVEQTEAFLAELRAHGTVAHLRRARGPDIDA 350
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQL+ ++E Q G
Sbjct: 351 ACGQLR----------KREAQQAG 364
>gi|329930082|ref|ZP_08283701.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|328935341|gb|EGG31816.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 346
Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats.
Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 46/375 (12%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M L K E++ + L + P R SQI + I+ I +F+ M+++ + +
Sbjct: 1 MKHLSK-------YEKIRKILSALNQPN----YRYSQITESIFKNKIGNFEAMNNLPKPL 49
Query: 61 RHLLNQHFSIIYPEIV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCV 118
R+ L + I + + K L P G IE+V + ++ + C+
Sbjct: 50 RNELIKELGNNVLSITPKMEQKSNQVSKILFAVP-----GDEYIESVRLSYQTGWESYCI 104
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQ GC C+FC TGT L RNLT +EI Q+L
Sbjct: 105 SSQCGCGFGCTFCATGTLGLKRNLTTDEITDQLLY------------------FTLNNHP 146
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
+ ++ MGMGE L N V +L + +D RRIT+ST G +P + ++ +E +
Sbjct: 147 LDSVSFMGMGEALANP-YVFDALHVLTDPKLFGLGHRRITVSTIGLIPGVKKLTKEFPQI 205
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
L SLH+ +D R+ L+PIN +PLE ++ + + ++ Y++L+GINDS +
Sbjct: 206 NLTFSLHSPFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKR-KVYIAYILLRGINDSTK 264
Query: 298 DALNLIKILKGI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPI 350
A + +L+G +NLIP+N ++ SDQ I F +K G +
Sbjct: 265 HAEAVADLLRGRGPWEHLYHVNLIPYNSTDATSQSFVESDQNSINMFLRILKSKGIHVTV 324
Query: 351 RTPRGLDILAACGQL 365
RT G DI AACGQL
Sbjct: 325 RTQFGSDINAACGQL 339
>gi|308798845|ref|XP_003074202.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
tauri]
gi|116000374|emb|CAL50054.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
tauri]
Length = 406
Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats.
Identities = 101/372 (27%), Positives = 170/372 (45%), Gaps = 66/372 (17%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVRHL 63
SL+G+ + ELE ++ G+P + R Q+ +Y R + +S+ +R
Sbjct: 87 VSLLGLTKRELEALAVERGMP----KFRGKQMADHLYAANGTSARSVDEFTTLSKALRAE 142
Query: 64 L-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + + + DGT K LLR +ET
Sbjct: 143 LVAAGVRVGRSSVHHVAAATDGTAKLLLRL-----DDDRVVETG---------------- 181
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
RNL EI+ QVL G++++N+
Sbjct: 182 --------------GFARNLAPHEIVDQVLALEEHF-----------------GQRVTNV 210
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
V MGMGEPL N NV K+ + + +G+ R IT+ST G +I ++ ++ +LA+
Sbjct: 211 VFMGMGEPLLNVPNVLKAHEVLNKEIGIG--ARHITISTVGVRGSIEKLAYAQLQSVLAV 268
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA + +LR ++P + YP+E L+ C Y ++ RR+TFEY +L G+ND P A
Sbjct: 269 SLHAPNQELRETIIPSAKVYPMEDLLQDCEQYF-IATGRRVTFEYTLLGGVNDQPEHAKE 327
Query: 302 LIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L ++L + + + +NLIP+NP ++ + + F + +++ + IR RGL+
Sbjct: 328 LGRLLYARNLASHVNLIPYNPVDDADFKRPSRATVYAFRDVLEQERVPASIRQTRGLEAA 387
Query: 360 AACGQLKSLSKR 371
AACGQL++ ++
Sbjct: 388 AACGQLRNAYQK 399
>gi|289612225|emb|CBI60152.1| unnamed protein product [Sordaria macrospora]
Length = 278
Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats.
Identities = 137/269 (50%), Positives = 181/269 (67%), Gaps = 14/269 (5%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+ L+G+ + E+ AL G R ++R QIW WIY RG +F M+DI++ L+
Sbjct: 23 RTDLVGLSKPEIRAALEAAGFDARQAKLRAKQIWHWIYNRGATEFSAMTDIAKAQHPTLD 82
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF I P + + ++S DGTRKWLL P + E V+IP+ RGTLCVSSQVGC+
Sbjct: 83 KHFVIGRPNVKEAQVSTDGTRKWLLTSP-----DGQDYEMVFIPDADRGTLCVSSQVGCT 137
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC+TGT +LVRNLT EI+ QV+LAR LG++P GR ++NIVMM
Sbjct: 138 LNCTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPSQP---------EGRMLTNIVMM 188
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL NFD V+ +LS+ D GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 189 GMGEPLYNFDAVRDALSVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 248
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP 274
V+ ++R+ +VP+NRKY +E L+ AC YP
Sbjct: 249 VTKEVRDEIVPLNRKYGIEELLQACADYP 277
>gi|159483801|ref|XP_001699949.1| hypothetical protein CHLREDRAFT_97359 [Chlamydomonas reinhardtii]
gi|158281891|gb|EDP07645.1| predicted protein [Chlamydomonas reinhardtii]
Length = 368
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 121/382 (31%), Positives = 178/382 (46%), Gaps = 53/382 (13%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGM----SDISQE 59
+ L + ELEE +G P + R Q+++W+Y + IR+ S S
Sbjct: 1 RVMLKNLPLPELEEWCASVGEPPK----RAKQLYRWLYGNRKWIRNLDQADSDASAFSGA 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-------EIETVYIPEKS 112
+ + ++ + DGTRK + GG +ETV IP +
Sbjct: 57 FKAKVLA----GGLQLQSVHTARDGTRKLVFALVGDWEGGDGPAGSARGTVETVLIPMTN 112
Query: 113 R------GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
R T C+S+QVGC++ C FCYTG L+ NL+ +I+ QV+ AR L +
Sbjct: 113 RQGQNLRYTACLSTQVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRYLAE------ 166
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
V I+NIV MGMGEPL N+D V ++ I + GL S+ +I +ST G VP
Sbjct: 167 ------QEVQIPIANIVFMGMGEPLHNYDAVMSAIEILAT--GLELSRNKIIVSTVGLVP 218
Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH---YPGLSNARRIT 283
+ R LA+ R+ +VP NR+YPL+ L+ A R Y +
Sbjct: 219 EMRRFIASGRAKLAV---------RDWIVPTNRRYPLDQLLGALREAFPYGKRKGDDFVV 269
Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
EYV+L G+ND+ DA L+ + I +NLI FNP G ++ S D+ F
Sbjct: 270 IEYVLLAGVNDTLADAERLLALTSDIYCLVNLIVFNPHDGTQFKRSSDDDVRAFRAVFLA 329
Query: 344 SGYSSPIRTPRGLDILAACGQL 365
+G +R +G D +AACGQL
Sbjct: 330 AGRPCTVRASKGDDEMAACGQL 351
>gi|224418821|ref|ZP_03656827.1| hypothetical protein HcanM9_06035 [Helicobacter canadensis MIT
98-5491]
gi|313142339|ref|ZP_07804532.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131370|gb|EFR48987.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 292
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 121/307 (39%), Positives = 171/307 (55%), Gaps = 20/307 (6%)
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L ++F EI ++ S DG+ K+L + V ++ ++ + TLC+SSQVG
Sbjct: 1 LKENFISNAVEIAKKEQSSDGSVKYLFKTADNLTYEAVFLKM----KEDKFTLCLSSQVG 56
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + CSFC T VRNL A E++ QV + K NIV
Sbjct: 57 CKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIKKD--------------QNIPSNKAVNIV 102
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++ ++GV LAIS
Sbjct: 103 YMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAIS 162
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHAV ++LR L+PIN+ Y ++ +ID +P + + +R+ FEY+M+ GINDS A L
Sbjct: 163 LHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKKL 221
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ +L I AK+NLI FNP G Y ++ + F E + + G IR +GLDI AAC
Sbjct: 222 VALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAAC 281
Query: 363 GQLKSLS 369
GQL+
Sbjct: 282 GQLREKE 288
>gi|182412196|ref|YP_001817262.1| radical SAM protein [Opitutus terrae PB90-1]
gi|205829633|sp|B1ZQZ5|RLMN1_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
AltName: Full=23S rRNA m2A2503 methyltransferase 1
gi|177839410|gb|ACB73662.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
Length = 355
Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats.
Identities = 108/374 (28%), Positives = 172/374 (45%), Gaps = 39/374 (10%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSD----ISQEVR 61
+ SL + ++L L + G + H ++ + Y R +++ +
Sbjct: 2 RPSLAELSVDDLASVLAQWGYKRSH----AGRVLREYYARC----GELTEAGRPWPAGLL 53
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVS 119
L F+ + +++ DGT K LLR +E V +P+ R C+S
Sbjct: 54 ERLRIEFAPGGTALAARQVAADGTTKLLLRL-----ADGRTVEAVLMPDYRADRAAGCLS 108
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC++ C FC T RNLTA E++ Q L R S GRK+
Sbjct: 109 SQVGCAMGCDFCATAQSGFERNLTAGEMVEQFLALRREAA--------------SAGRKL 154
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238
+V MGMGEPL N D V ++ +D+ R++T+ST G VP I + ++G+
Sbjct: 155 QTVVFMGMGEPLLNLDAVLTAVRRIADNTYGGLGWRQVTVSTVGLVPGIDALTAADLGIN 214
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA + R L+P R++ + ++ A + S R + +Y +LKG+NDS
Sbjct: 215 LAVSLHAPDDATRAALLPAGRRFAIADILAAVDRFQA-SRGRPVIIQYCLLKGVNDSAAH 273
Query: 299 ALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
A L ++ +NL+ +NP G Y S + F ++ G + +R R
Sbjct: 274 ARMLAAVIGSRRMHVNLLHYNPTGLSLRGVRYEPSGDEAAAQFLAELRARGVVTHLRRSR 333
Query: 355 GLDILAACGQLKSL 368
G DI AACGQL++
Sbjct: 334 GPDIDAACGQLRAK 347
>gi|15639062|ref|NP_218508.1| hypothetical protein TP0068 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025302|ref|YP_001933074.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum
SS14]
gi|81556505|sp|O83107|RLMN_TREPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829921|sp|B2S216|RLMN_TREPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|3322324|gb|AAC65061.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189017877|gb|ACD70495.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum
SS14]
gi|291059484|gb|ADD72219.1| radical SAM enzyme, Cfr family [Treponema pallidum subsp. pallidum
str. Chicago]
Length = 340
Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats.
Identities = 111/358 (31%), Positives = 164/358 (45%), Gaps = 31/358 (8%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L G++ EE+++ R R Q+++WI G DF MSD+S E R L +
Sbjct: 7 LSGLLPEEIQKVC------AFAERFRGVQVFRWI-AAGCTDFHAMSDLSSETRARLARAC 59
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I + DGT K + + + + + SR T C+S QVGC + C
Sbjct: 60 VISDTRVYTTLRDVDGTLKLGIELKDKRR----VEAVLLVDQVSRKTACLSCQVGCPMAC 115
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+FC TG RNL+A EI+ Q L +G + N+V MGMG
Sbjct: 116 AFCQTGQLGFARNLSASEIVEQFLHLERCVGT------------------LDNVVFMGMG 157
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EP+ N D V +++ I S G S++RIT+STSG I + + V LA+SL +
Sbjct: 158 EPMLNLDAVCRAIEILSHPQGRDLSEKRITISTSGHCRGIYSLADRALQVRLAVSLTTAN 217
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
LR L+P L L A R++ S R+T E +++G+N S R A +I
Sbjct: 218 APLRARLMPRAAHDSLAKLKSAIRYFNEKSGK-RVTLELALMRGVNTSERHAQEVIDFAH 276
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
G+ +NLIP+NP + + ++ F + R+ R RG I ACGQL
Sbjct: 277 GLNVHVNLIPWNPVASIHFETPREVEVAHFEALLMRARIPVTRRYQRGNGIGGACGQL 334
>gi|281202992|gb|EFA77193.1| putative ribosomal RNA large subunit methyltransferase N
[Polysphondylium pallidum PN500]
Length = 361
Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats.
Identities = 147/370 (39%), Positives = 202/370 (54%), Gaps = 64/370 (17%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
++LIG+ +E+L + L ++G R QIW WIY +G ++ S++S + LL +
Sbjct: 45 KNLIGISKEDLTKQLTELG---DFQSYRIDQIWSWIYNKGQKNIDNFSNLSNVQKSLLKE 101
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
++ I Y + +++S DGTRK L+ F ++ETV+IPE RGTLCVSSQVGC+
Sbjct: 102 YYHIDYGTLDSDQLSKDGTRKILVGFS------GDQVETVFIPEARRGTLCVSSQVGCTF 155
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC+TGTQ+LVRNL EIL Q ++ARSL+ DF + R ISN+V MG
Sbjct: 156 GCKFCFTGTQRLVRNLNVSEILGQFMMARSLMNDFG---------HTTEKRLISNVVFMG 206
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHA 245
MGEPL N+ +L I +D GLS SK RIT+STSG VP I R+G+E + LAISLHA
Sbjct: 207 MGEPLMNYRAASAALRIMTDPNGLSLSKSRITVSTSGVVPLIERLGKEFPGIGLAISLHA 266
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+N R+ +VPIN+++P+E LI C + L N +IT D P
Sbjct: 267 SNNKTRSEIVPINQQWPIEELIKTCIEFSKL-NTNKITI---------DKP--------- 307
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ I F+ I +G IR RG DILAACGQL
Sbjct: 308 --------------------------EKIKEFASIIANAGLKVTIRQSRGQDILAACGQL 341
Query: 366 KSLSKRIPKV 375
K+ S ++ K
Sbjct: 342 KTESVKVKKT 351
>gi|226314089|ref|YP_002773985.1| chloramphenicol/florfenicol resistance protein [Brevibacillus
brevis NBRC 100599]
gi|226097039|dbj|BAH45481.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 343
Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats.
Identities = 112/373 (30%), Positives = 173/373 (46%), Gaps = 42/373 (11%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
M K E + L + P+ R +QI I+ + I +++ M+ + + +
Sbjct: 1 MKLTSK-------YETIRRILSECKQPE----YRYAQIMDAIFKQNIGEYERMTILPKFL 49
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R LN I+ P + + T K + + G E+ + C+S+
Sbjct: 50 RDELN---RILGPNVCSIAPVKELTSKQVSKVLFAIPGDEQVEAVRLTYERGWKSYCIST 106
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC C FC TGT L RNLTA+EI Q+L R G +
Sbjct: 107 QCGCGFRCKFCATGTIGLKRNLTADEITDQLLYFR------------------LNGHSLD 148
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
+I MGMGE L N ++ ++++I +D RRIT+ST G +P I ++ E V L
Sbjct: 149 SISFMGMGEALANP-HIFEAMTILTDPYLFGLGHRRITISTIGLLPGIDKLTREFPQVNL 207
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
SLH+ +D R+ L+PIN ++P+ ++ A + + R++ Y++L+G+NDS A
Sbjct: 208 TFSLHSPFDDQRSELMPINDRFPVRDVLIALDRHIRET-GRKVYIAYILLRGVNDSTAHA 266
Query: 300 LNLIKILKGIPA-----KINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRT 352
+ ++L+G A +NLIPFN Y SD I F +K G S +RT
Sbjct: 267 EAVAELLRGRGAWEHLYHVNLIPFNSTEVTPDSYRQSDPSRIKAFVRILKSRGISVTVRT 326
Query: 353 PRGLDILAACGQL 365
G DI AACGQL
Sbjct: 327 QFGSDINAACGQL 339
>gi|255080924|ref|XP_002504028.1| predicted protein [Micromonas sp. RCC299]
gi|226519295|gb|ACO65286.1| predicted protein [Micromonas sp. RCC299]
Length = 485
Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats.
Identities = 112/382 (29%), Positives = 169/382 (44%), Gaps = 26/382 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSD-------- 55
L + SL R L L G+ + + I +RD + D
Sbjct: 7 LTRTSLFD--RSALVAFLED-GLGPKRKDAAAKH-CRAILHAAVRDAEAGLDAVNLSESR 62
Query: 56 ---ISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEK 111
I + R + + F++I I D + S T K ++ V +K
Sbjct: 63 VPGIPKFARDQIPERFALITTTIADCQTSKDGSTTKMVVELQDGHR----VESVVMRHDK 118
Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
R TLCVSSQVGC + C+FC TGT + NLT+ EIL Q++ A L D + +
Sbjct: 119 GRVTLCVSSQVGCKMGCTFCATGTLGELGNLTSGEILEQLVHANRLFNDDGTGAGLRRVS 178
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
+ G + N+V MGMGEPL N+D V ++ +D + + R+T+ST G VP + R+
Sbjct: 179 GTAHG--VRNLVFMGMGEPLNNYDAVVGAIGPMTDPNAFALAPSRVTVSTVGVVPKMRRL 236
Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
+ GV LA+SLHA + LR +VP Y L ++ A Y R EY +L
Sbjct: 237 VRDAPGVCLALSLHAPNQRLREKIVPTATAYKLPDILSALDEYLATGPKVRTMIEYCVLG 296
Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIK--RSGYS 347
G+ND+ A L ++++ +NLIP+NP + +D+ +
Sbjct: 297 GVNDTTECARELGELMRHRDVIVNLIPYNPTATPMGHSPPKMEDVRAMCAVLTGPEFNQF 356
Query: 348 SPIRTPRGLDILAACGQLKSLS 369
+ +R G DI ACGQL
Sbjct: 357 TTVRHEMGQDISGACGQLALKK 378
>gi|196233391|ref|ZP_03132235.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
gi|196222531|gb|EDY17057.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
Length = 367
Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats.
Identities = 131/380 (34%), Positives = 182/380 (47%), Gaps = 30/380 (7%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+L + L + + + H +W+ +Y G D S+ +R L+
Sbjct: 13 PTLTDLPFPALAQEMDGLSPVHTHA------LWRALYREGATDLARRSEFLPPLRRWLDA 66
Query: 67 ---HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ PE+V + S TRK+LLR IETV + + R T CVS+Q
Sbjct: 67 ATARLPVDVPELVADTASTDGLTRKFLLRLADA-----QTIETVLMSYRGRYTACVSTQA 121
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG R+L EI+ QVL A+ L + N+
Sbjct: 122 GCAMGCVFCATGQMGFTRHLRPGEIVAQVLHAQRTLLARSEPG-------------LRNL 168
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V+MGMGEPL N+D+V +L I SD GL+ IT+ST G VP I R+ EE LA+
Sbjct: 169 VLMGMGEPLHNYDSVMTALEIISDRRGLNIGPGHITISTVGVVPGILRLAEEQRPYHLAV 228
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH S + R+ LVP +R++ L LI ACR Y + RRI FE+ ++ G NDSP A
Sbjct: 229 SLHGASEEERSALVPASRRWSLAELIAACRTYGAKT-GRRIFFEWTLIAGQNDSPAQAAR 287
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L +L GI A +NLIP NP G S F +K + S +R RG+D+ A
Sbjct: 288 LAALLAGIDAHVNLIPLNPTGGFAGTASASAAANEFQHTLKAANIPSTVRQRRGIDVAAG 347
Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
CGQL+ R +Q
Sbjct: 348 CGQLRVEKGRTSAGVTSNVQ 367
>gi|171912540|ref|ZP_02928010.1| hypothetical protein VspiD_15210 [Verrucomicrobium spinosum DSM
4136]
Length = 368
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 109/374 (29%), Positives = 176/374 (47%), Gaps = 31/374 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L+ + EEL +++ G H + + +Y Q + + ++
Sbjct: 16 RPLLDLSTEELSAWMVEHGYKPAHTLP----VLRDVYGTRGAALQPKDRLPANLVQHIHS 71
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGC 124
F + ++S DGT K LLR P +E+V +P+ R C+SSQVGC
Sbjct: 72 TFPATVATLAQRQVSEDGTCKLLLRLP-----DGRTVESVLMPDYHPERAAGCISSQVGC 126
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC T RNLT+ EI+ Q + R GR + +V
Sbjct: 127 AMGCDFCATTQTGFERNLTSGEIVEQFIHLRREAR--------------GAGRALRTVVF 172
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGMGEP+ N +V ++ +D + R++T+ST G VP I + E +GV LA+SL
Sbjct: 173 MGMGEPMLNLRHVLPAVERMADPRLGALGWRQVTISTVGIVPGIEELTEANLGVHLAVSL 232
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++ R ++P+ R++P++ +++A Y S T +Y +L+G+NDS A +L
Sbjct: 233 HAPDDETRTAILPMGRRFPVQDILEAADRYQEKSGRI-TTIQYCLLEGVNDSLNQARDLA 291
Query: 304 KILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++K INL+ +NP G Y S + +F ++ G + +R RG DI
Sbjct: 292 NLMKDRRMHINLLRYNPTGLSLKGRTYAPSSMEQTESFLATLRECGAVAHLRRARGPDID 351
Query: 360 AACGQLKSLSKRIP 373
AACGQL+ R
Sbjct: 352 AACGQLRKREGRER 365
>gi|255100607|ref|ZP_05329584.1| florfenicol/chloramphenicol resistance protein [Clostridium
difficile QCD-63q42]
Length = 416
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 115/377 (30%), Positives = 176/377 (46%), Gaps = 38/377 (10%)
Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71
+++++ + + +P+ R Q+ ++++GI F+ M + + +R L + F +++
Sbjct: 4 YKKMKQLIADMRLPE----YRYKQLLDAVFLQGIMRFEDMKLLPKTLREKLVEQFGETVV 59
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
+ + + S K L G ++ + C+SSQ GC C FC
Sbjct: 60 EIKAIHHEKSMQTD-KVLFELSD----GNRVETVGLFYKEGWNSFCISSQSGCGFGCKFC 114
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
TGT L RNLT +EI Q+L G I++I MGMGEP
Sbjct: 115 ATGTLGLRRNLTVDEITDQILYFMQ------------------QGCSINSISFMGMGEPF 156
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDL 250
N V ++L + S+RRIT+ST G VP I ++ E V LA SLHA ++ L
Sbjct: 157 ANP-QVFEALHDLTAPELFGLSQRRITISTIGIVPGIQKLTREYPQVNLAYSLHAPTDRL 215
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL---- 306
R L+PI + YPL ++D + +N ++ Y+MLK +NDS R A L K+L
Sbjct: 216 RETLMPITKTYPLGQVLDTLDQHIRQTNR-KVFLAYIMLKDVNDSDRHAEQLTKLLFKHK 274
Query: 307 KGIP-AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
K +P ++LIP+N E + S I F I +G S IRT G DI AACGQ
Sbjct: 275 KYLPLYHLDLIPYNQTTVTETMVPSSHTRIKAFCRIIHNAGISVNIRTQFGSDINAACGQ 334
Query: 365 LKSLSKRIPKVPRQEMQ 381
L + K + M
Sbjct: 335 LAGAYRDDQKQGERTMS 351
>gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
Length = 314
Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats.
Identities = 117/298 (39%), Positives = 167/298 (56%), Gaps = 20/298 (6%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132
E++ EK S DGT+K+L + V I R TLCVS+QVGC+L C FC
Sbjct: 2 ELIHEKQSIDGTKKFLWQLCDGHAIETVLIPATDSRGSSERLTLCVSTQVGCALGCHFCA 61
Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
+G RNL+ EI+ QVLL+ S++ ++S+IV MGMGEPL
Sbjct: 62 SGLLGFKRNLSCGEIVEQVLLSESIVKQ-----------------RVSHIVFMGMGEPLL 104
Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLR 251
N+D + KS+ + S S G+ S R+IT+STSG P I ++ E LA+SLHA +++LR
Sbjct: 105 NYDQLIKSIRLISSSWGIGISPRKITISTSGIAPRIRKLALETLPFRLAVSLHATTDELR 164
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
+ ++PIN KYPL LI +C + ++IT EY+++ G+ND DA L +I + A
Sbjct: 165 SKIMPINSKYPLSELIKSCEEFCSRR-KQKITLEYILISGLNDRREDAERLARIATSLRA 223
Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
K+NLIP+NP + DQK+ ++F +K IR RG DI ACGQL+
Sbjct: 224 KVNLIPYNPIERLAWKSPDQKEQLSFFRWLKNKAVQVSIRKERGRDIDGACGQLRLRY 281
>gi|56962848|ref|YP_174574.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii
KSM-K16]
gi|81366753|sp|Q5WJ42|CFR_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|56909086|dbj|BAD63613.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii
KSM-K16]
Length = 350
Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 112/371 (30%), Positives = 176/371 (47%), Gaps = 40/371 (10%)
Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71
E L+ L + P R QI + I+ I F M+ + + +R L F SI+
Sbjct: 10 YERLKHFLNALNEPT----YRYKQITEAIFKHRIGAFNKMTTLPKALRESLINEFGPSIL 65
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSF 130
E V E S T+ L + G ++E V + ++ + C+SSQ GC L C+F
Sbjct: 66 TVEPVLETTSQQVTKVLL------KVAGNNQVEAVRMHYEAGWESFCISSQCGCGLGCTF 119
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C TG L +NL+A+E+ Q+L G + ++ MGMGE
Sbjct: 120 CSTGAIGLKQNLSADEMTDQLLY------------------FYLKGHSLDSVSFMGMGEA 161
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
L N + +L++ D + S RRIT+ST G +PNI R+ + L SLH+ +D
Sbjct: 162 LANVR-IFDALNVLVDRQLFALSPRRITVSTVGIIPNIQRMTSSFPQMNLTFSLHSPFHD 220
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--- 306
R+ L+PIN KYPL+ +++ + R++ YVML+G+NDS + A L+K +
Sbjct: 221 QRSELMPINNKYPLDQVMNVLDQHI-HETGRKVYIAYVMLRGVNDSEKHAEALVKRILNN 279
Query: 307 -KGIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+NLI +NP G Y + ++ + TF +K + IR+ G +I AACG
Sbjct: 280 RYPHLYHVNLIRYNPTVGTPENYGQTIEEKLQTFYRVVKSARIPVTIRSQFGREIDAACG 339
Query: 364 QLKSLSKRIPK 374
QL + +
Sbjct: 340 QLYGQYQAKKR 350
>gi|218682815|ref|ZP_03530416.1| radical SAM enzyme, Cfr family protein [Rhizobium etli CIAT 894]
Length = 240
Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats.
Identities = 157/229 (68%), Positives = 184/229 (80%), Gaps = 3/229 (1%)
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
LGDFP E +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS S+RR+
Sbjct: 6 LGDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRV 65
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
TLSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLS
Sbjct: 66 TLSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIEACKAYPGLS 125
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
NARRITFEYVMLK +NDS DA LIK+LKG+PAKINLIPFNPWPG Y CSD + I F
Sbjct: 126 NARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKF 185
Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR---QEMQIT 383
++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R + M I
Sbjct: 186 ADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFEAMMIA 234
>gi|34328031|ref|NP_899167.1| florfenicol/chloramphenicol resistance protein [Staphylococcus
sciuri]
gi|312620947|ref|YP_003927883.1| rRNA methylase [Bacillus sp. BS-02]
gi|75466541|sp|Q9FBG4|CFR_STASC RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|205829896|sp|A5HBL2|CFR_STAAU RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|205829901|sp|A2AXI2|CFR_STAWA RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|9909980|emb|CAC04525.1| florfenicol resistance protein [Staphylococcus sciuri]
gi|33352201|emb|CAE18142.1| florfenicol/chloramphenicol resistance protein [Staphylococcus
sciuri]
gi|124001381|emb|CAL64019.1| rRNA methylase [Staphylococcus warneri]
gi|145974708|gb|ABQ00063.1| Cfr [Staphylococcus aureus]
gi|185178617|gb|ACC77590.1| 23S rRNA methylase [Staphylococcus aureus]
gi|307543255|gb|ADN44269.1| rRNA methylase [Bacillus sp. BS-02]
gi|308275351|emb|CBN88266.1| rRNA methylase [Staphylococcus aureus]
gi|310772090|emb|CBW44219.1| rRNA methylase [Staphylococcus aureus]
Length = 349
Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats.
Identities = 111/381 (29%), Positives = 183/381 (48%), Gaps = 46/381 (12%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MNF K +++E L P R QI I+ + I F+ M + + +
Sbjct: 1 MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51
Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
R L +F +++ +++ E+ S T K L +ETV + K+ + C
Sbjct: 52 REDLINNFGETVLNIKLLAEQNSEQVT-KVLFEVS-----KNERVETVNMKYKAGWESFC 105
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ GC+ C FC TG L +NLT +EI QVL +G
Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLY------------------FHLLGH 147
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
+I +I MGMGE L N V +L +D + S RR+++ST G +P+I ++ +E
Sbjct: 148 QIDSISFMGMGEALANR-QVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V L SLH+ ++ R+ L+PIN +YP++ +++ + L++ ++ Y+ML G+NDS
Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265
Query: 297 RDALNLIKILKGI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
A ++ +LK +NLI +NP Y +++ + F + +K +G
Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325
Query: 350 IRTPRGLDILAACGQLKSLSK 370
IR+ G+DI AACGQL +
Sbjct: 326 IRSQFGIDIDAACGQLYGNYQ 346
>gi|292493934|ref|YP_003533077.1| rRNA methylase [Bacillus sp. BS-01]
gi|291276223|gb|ADD91311.1| rRNA methylase [Bacillus sp. BS-01]
Length = 349
Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats.
Identities = 111/381 (29%), Positives = 183/381 (48%), Gaps = 46/381 (12%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MNF K +++E L P R QI I+ + I F+ M + + +
Sbjct: 1 MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51
Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
R L +F +++ +++ E+ S T K L +ETV + K+ + C
Sbjct: 52 REDLINNFGETVLNIKLLAEQNSEQVT-KVLFEVS-----KNERVETVNMKYKAGWESFC 105
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ GC+ C FC TG L +NLT +EI QVL +G
Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLY------------------FHLLGH 147
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
+I +I MGMGE L N V +L +D + S RR+++ST G +P+I ++ +E
Sbjct: 148 QIDSISFMGMGEALANR-QVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V L SLH+ ++ R+ L+PIN +YP++ +++ + L++ ++ Y+ML G+NDS
Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265
Query: 297 RDALNLIKILKGI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
A ++ +LK +NLI +NP Y +++ + F + +K +G
Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGHVEAFYKVLKSAGIHVT 325
Query: 350 IRTPRGLDILAACGQLKSLSK 370
IR+ G+DI AACGQL +
Sbjct: 326 IRSQFGIDIDAACGQLYGNYQ 346
>gi|307352151|ref|YP_003896025.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus
faecalis]
gi|307155389|gb|ADN34770.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus
faecalis]
Length = 349
Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats.
Identities = 111/381 (29%), Positives = 183/381 (48%), Gaps = 46/381 (12%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MNF K +++E L P R QI I+ + I F+ M + + +
Sbjct: 1 MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51
Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
R L +F +++ +++ E+ S T K L +ETV + K+ + C
Sbjct: 52 REDLINNFGETVLNIKLLAEQNSEQVT-KVLFEVSKNKR-----VETVNMKYKAGWESFC 105
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ GC+ C FC TG L +NLT +EI QVL +G
Sbjct: 106 ISSQCGCNFGCKFCATGNIGLKKNLTVDEITDQVLY------------------FHLLGH 147
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
+I +I MGMGE L N V +L +D + S RR+++ST G +P+I ++ +E
Sbjct: 148 QIDSISFMGMGEALANR-QVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V L SLH+ ++ R+ L+PIN +YP++ +++ + L++ ++ Y+ML G+NDS
Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265
Query: 297 RDALNLIKILKGI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
A ++ +LK +NLI +NP Y +++ + F + +K +G
Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325
Query: 350 IRTPRGLDILAACGQLKSLSK 370
IR+ G+DI AACGQL +
Sbjct: 326 IRSQFGIDIDAACGQLYGNYQ 346
>gi|71608924|emb|CAI56203.1| methyltransferase [Staphylococcus aureus]
gi|76057931|emb|CAJ30491.1| 23S rRNA methylase [Staphylococcus aureus]
Length = 349
Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats.
Identities = 111/381 (29%), Positives = 184/381 (48%), Gaps = 46/381 (12%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MNF K +++E L P R QI I+ + I F+ M + + +
Sbjct: 1 MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51
Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
R L +F +++ +++ E+ S T K L +ETV + K+ + C
Sbjct: 52 REDLINNFGETVLNIKLLAEQNSEQVT-KVLFEVS-----KNERVETVNMKYKAGWESFC 105
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ GC+ C FC TG L +NLT +EI QVL +G
Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLY------------------FHLLGH 147
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-G 236
+I +I MGMGE L N V +L +D + S RR+++ST G +P+I ++ +E
Sbjct: 148 QIDSISFMGMGEALANR-QVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
V L SLH+ ++ R+ L+PIN +YP++ +++ + L++ ++ +Y+ML G+NDS
Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIDYIMLPGVNDSL 265
Query: 297 RDALNLIKILKGI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
A ++ +LK +NLI +NP Y +++ + F + +K +G
Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325
Query: 350 IRTPRGLDILAACGQLKSLSK 370
IR+ G+DI AACGQL +
Sbjct: 326 IRSQFGIDIDAACGQLYGNYQ 346
>gi|218660671|ref|ZP_03516601.1| hypothetical protein RetlI_14322 [Rhizobium etli IE4771]
Length = 245
Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats.
Identities = 145/224 (64%), Positives = 184/224 (82%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L
Sbjct: 22 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEI 245
>gi|282890718|ref|ZP_06299238.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499311|gb|EFB41610.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 364
Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats.
Identities = 132/384 (34%), Positives = 201/384 (52%), Gaps = 32/384 (8%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQ--GMSDISQEV 60
+K S++ E + I R+ S I++ + G + ++ +QE+
Sbjct: 1 MTEKISILAHTEE---SFIHAIAERLGKGRVHASLIYQEFFRSGSLNAAHPAFNN-AQEI 56
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R + ++ S+ + D K T K+L +E+E V IP +S GTLC+SS
Sbjct: 57 RTAILENVSVSQLSLGDRKE-DGKTGKFL-----GKTADGLEVEFVQIPMQSGGTLCISS 110
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C+FC TG L+RNLT EEI+ QV LA+
Sbjct: 111 QVGCQMGCAFCETGKMGLLRNLTTEEIVSQVYLAKHH-----------------NQFSFR 153
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE--EIGVM 238
N+V MGMGEPL NFD V +++ I +D G F +RR+T+STSG V I ++
Sbjct: 154 NLVFMGMGEPLDNFDAVMQAVRIFNDPKGFGFGRRRMTISTSGCVDGIDKLANLGGQAPN 213
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+S++A +++LRN L+P+NRKY L+ L +A + Y + + I YV+L+G ND
Sbjct: 214 LAVSINAPTDELRNRLMPVNRKYDLQTLYEAMQGYCTKTGRQ-ILIAYVLLQGQNDQIEH 272
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
AL L + LKG+ KINLIP+NP + D I F++ +++ GY + +R +G DI
Sbjct: 273 ALQLSEYLKGLNVKINLIPYNPQSRDRFQAPDLNTIEAFTQSLRQKGYYTLLRLTKGQDI 332
Query: 359 LAACGQLKSLSKRIPKVPRQEMQI 382
+AACGQL +L R Q+ +
Sbjct: 333 MAACGQLGNLKLRKQIFENQKNAL 356
>gi|183220754|ref|YP_001838750.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910855|ref|YP_001962410.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|205829783|sp|B0SGA8|RLMN_LEPBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829784|sp|B0SPQ8|RLMN_LEPBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|167775531|gb|ABZ93832.1| Fe-S-cluster redox enzyme [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779176|gb|ABZ97474.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 353
Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats.
Identities = 120/375 (32%), Positives = 181/375 (48%), Gaps = 36/375 (9%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L G ++ELEE + +G+ + R +QI+ IY + +S+EVR L +H
Sbjct: 8 LKGKTKKELEEICVSLGLE----KYRAAQIYTGIYKSRYTTIDQFTTLSKEVREKLKEHT 63
Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCS 125
EI + +S + TRK+ +G EIE V+IP + R T+C+SSQ+GC+
Sbjct: 64 QYPEIEIGRDLVSKEDGTRKFTF-----YVGENKEIEAVWIPSGDGGRKTICISSQIGCT 118
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C FC TG + NL +IL QVL L+GD + +NIV M
Sbjct: 119 LNCKFCATGLLEYKGNLQTWQILDQVLQVERLVGD-----------------RATNIVFM 161
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
GMGEP+ N+ +V K+ I D RIT+ST+G I R + AISL+
Sbjct: 162 GMGEPMHNYFSVMKAAHILRDKDAFGLGALRITISTAGVTTGINRFIENKEPFNFAISLN 221
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + R+ ++ +N K+PLE LID+ + + + ITFEYVM+ +N +A L K
Sbjct: 222 HPNPNARSSVMDVNDKHPLEKLIDSAKRFTKELDR-AITFEYVMIPDVNMGRDNAERLAK 280
Query: 305 ILKGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAA 361
I + + KIN+IP N + ++ F + ++ ++PI R G DI A
Sbjct: 281 IARSVNKCKINVIPLN-TDFTGWRRPTDDEVKDFVMHL-KAKTTAPILNRRSPGRDINGA 338
Query: 362 CGQLKSLSKRIPKVP 376
CG L R
Sbjct: 339 CGMLALKGIRSETTK 353
>gi|308172367|ref|YP_003919072.1| florfenicol/chloramphenicol resistance like protein [Bacillus
amyloliquefaciens DSM 7]
gi|307605231|emb|CBI41602.1| florfenicol/chloramphenicol resistance like protein [Bacillus
amyloliquefaciens DSM 7]
gi|328552188|gb|AEB22680.1| chloramphenicol/florfenicol resistance protein [Bacillus
amyloliquefaciens TA208]
gi|328910459|gb|AEB62055.1| florfenicol/chloramphenicol resistance like protein [Bacillus
amyloliquefaciens LL3]
Length = 348
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 37/366 (10%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
++E L + P R QI I+ I F ++ + + +R +L + F I
Sbjct: 10 IQEFLKQNEFPD----FRMKQITNAIFHGRINHFNEITVLPKSLRKMLVKEFGESVLNIA 65
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGT 135
K +L I G +IETV + K+ + C+SSQ GC C+FC TG
Sbjct: 66 ALKEQHSEQVTKVLF----EISGDEKIETVNMKYKAGWESFCISSQCGCHFGCTFCATGD 121
Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
L NLT++EI Q+L G I +I MGMGE L N
Sbjct: 122 IGLKHNLTSDEITDQILY------------------FHLKGHSIDSISFMGMGEALANR- 162
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNIL 254
V +L + ++ + S RR+++ST G +P I ++ + V L SLH+ N+ R+ L
Sbjct: 163 QVFDALHVLTNPELFALSPRRLSISTIGIIPGIKKMTQNYPQVNLTFSLHSPFNEQRSKL 222
Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI----- 309
+PIN +YPL ++D + +++ ++ Y+ML G+NDS A ++K+L+G
Sbjct: 223 MPINERYPLMEVMDTLDEHIRVTSR-KVYIAYIMLPGVNDSIDHANEVVKLLRGRYKRGN 281
Query: 310 PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
+N+I +NP + ++ +V F + +K +G + IR+ G+DI AACGQL
Sbjct: 282 LFHVNIIRYNPTVSSPMRFKEVNENQVVNFYKTLKSAGINVTIRSQFGIDIDAACGQLYG 341
Query: 368 LSKRIP 373
++
Sbjct: 342 NYQKNN 347
>gi|160880358|ref|YP_001559326.1| radical SAM protein [Clostridium phytofermentans ISDg]
gi|205829630|sp|A9KK15|CFR_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|160429024|gb|ABX42587.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
Length = 344
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 116/363 (31%), Positives = 178/363 (49%), Gaps = 41/363 (11%)
Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71
E +++ + + +P R QI K I+ + F+ MS + E++ L F S+
Sbjct: 6 YETMKQLIADMKLPD----YRYEQIIKAIFSQHTSTFEKMSTLPLELKKSLINTFGPSVC 61
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSF 130
V + S K L P +ETV + K + C+SSQ GC C F
Sbjct: 62 CTVPVACQTS-GQADKILFSLP-----DGNRVETVNLHYKKGWESFCISSQCGCGFGCQF 115
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C TGT RN+TA+EI Q+L G K+++I MGMGEP
Sbjct: 116 CATGTLGHKRNMTADEITDQLLY------------------FHLNGHKLNSISFMGMGEP 157
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
L N N+ +L+I +DS S+RRIT+ST G +P I R+ E + LA SLH+ +
Sbjct: 158 LANP-NLFDALNILNDSSLFGLSQRRITISTIGIIPGIKRLTHEFPQINLAYSLHSPFEN 216
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
R+ L+P+NR +PL +++A ++ + RR+ Y+ML G+NDS A L+++L+
Sbjct: 217 QRSELMPVNRSFPLHEVMNALDNHIRHT-GRRLFLAYIMLNGVNDSVDHAKALVELLQDR 275
Query: 310 -----PAKINLIPFNPWP--GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LIP+N ++ SD+ + F + + +G S RT G DI AAC
Sbjct: 276 GPWAHLYHVDLIPYNATDKTPRKFASSDKITMKRFRDILHANGISVATRTQFGSDISAAC 335
Query: 363 GQL 365
GQL
Sbjct: 336 GQL 338
>gi|168184510|ref|ZP_02619174.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum Bf]
gi|237796302|ref|YP_002863854.1| chloramphenicol/florfenicol resistance protein [Clostridium
botulinum Ba4 str. 657]
gi|182672475|gb|EDT84436.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum Bf]
gi|229261117|gb|ACQ52150.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum Ba4 str. 657]
Length = 344
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 99/355 (27%), Positives = 163/355 (45%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + + +P R Q+ K I+ + I +F M + + +R L F ++
Sbjct: 11 MKQIVSNLKLPD----YRYKQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFGKNVSSVI 66
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+S Q GCS C FC TG+
Sbjct: 67 PVFSQDS---KQAQKLLIELTDGERIEAVGLKYKQGWESFCISCQCGCSFGCRFCATGSV 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNDHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK +
Sbjct: 225 PINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++G S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338
>gi|190150594|ref|YP_001969119.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|189915725|gb|ACE61977.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 274
Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats.
Identities = 116/270 (42%), Positives = 161/270 (59%), Gaps = 20/270 (7%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L
Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC
Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNLT EI+ QV A ++G+F R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGV----------RPITNVVM 184
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP 274
A +++LR+ ++PIN+KY ++ML+D+ YP
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYP 274
>gi|194694544|gb|ACF81356.1| unknown [Zea mays]
Length = 266
Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats.
Identities = 112/258 (43%), Positives = 157/258 (60%), Gaps = 14/258 (5%)
Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
P + R T+CVSSQVGC++ C FC+TG L ++L+ EI+ Q + AR L D G
Sbjct: 2 EPVRGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELGS--- 58
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
I+N+V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP
Sbjct: 59 -----------INNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQ 107
Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
+ R +E LA+SL+A ++++RN ++PINRKY L +L+ R L + + FEYV
Sbjct: 108 LKRFLQESNCSLAVSLNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYV 167
Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
ML G+NDS DA LI++++GIP KINLI FNP G ++ + I+ F + + G +
Sbjct: 168 MLSGVNDSMDDAKRLIELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLT 227
Query: 348 SPIRTPRGLDILAACGQL 365
+R RG D +AACGQL
Sbjct: 228 VFVRLSRGDDQMAACGQL 245
>gi|308804299|ref|XP_003079462.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
tauri]
gi|116057917|emb|CAL54120.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
tauri]
Length = 385
Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats.
Identities = 123/409 (30%), Positives = 187/409 (45%), Gaps = 55/409 (13%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY-VRGIRDFQGMSDISQEVRH 62
+ ++LI + L + + R Q+ +Y R R + M + +E+R
Sbjct: 1 MSAKTLIASSLDVLRRVVSE---ECAAPAWRAKQLVDSLYGKRRARAIEDMELLPREMRR 57
Query: 63 LLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET---------------- 105
+ +S ++V + DG K +R R + V I
Sbjct: 58 AMEDAGWSTGRLDVVKGSLGRDGAGKISVRVGERELVEAVGIPDASCYARDGSGEVLGRA 117
Query: 106 --------VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
V +K+R T CVSSQVGC++ CSFC TG Q RNL+A EI+ QVL L
Sbjct: 118 DVETMFRGVDGWDKNRLTACVSSQVGCAMKCSFCATGLQGFKRNLSASEIVSQVLELEEL 177
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
G+++S++V MGMGEP+ N V ++ ++ +G+ R I
Sbjct: 178 -----------------YGKRVSDVVFMGMGEPMLNMKAVVGAIRCLNEDIGIGG--RHI 218
Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
T+ST G ++A++ +E LAISLHA + R +VP + YP E L+D + Y
Sbjct: 219 TVSTVGIPNSLAKLAKEKLQATLAISLHAPDQETRLRIVPSAKHYPYEDLLDDVKMYFRE 278
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKD 333
+ RR+TFEY +L G+NDSP A L +ILK A +N+IP+N G +++ +
Sbjct: 279 T-GRRVTFEYTLLAGVNDSPSQAQALSRILKRKFGAGAHLNVIPWNSIEGVDHVKPSRNA 337
Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382
+ F + G S IR RG D+ AACG L +R R
Sbjct: 338 VHRFCGAL--GGISHTIRRTRGDDVSAACGMLTGDFERRSLGRRSMNAE 384
>gi|159487459|ref|XP_001701740.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii]
gi|158280959|gb|EDP06715.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii]
Length = 502
Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats.
Identities = 117/394 (29%), Positives = 169/394 (42%), Gaps = 61/394 (15%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY-----VRGIRDFQG-M---SDISQE 59
L + ELE G R QIW+W+Y +R + M + + +
Sbjct: 95 LKALTLPELEAWCAAQGEAAPAN--RALQIWRWMYADPPAGSWVRSLEETMGRQNGFAAK 152
Query: 60 VRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
+ H S+ ++ + DGTRK + G +
Sbjct: 153 FVEKVGPHVSLEGGLKLSQVVRASDGTRKLVFTLLGGEAAGGSIETVLIPV--------- 203
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
VGC++ C FCYTG L+ NL+ +I+ QV+ AR L
Sbjct: 204 ---VGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRFLAQEGDRT------------P 248
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
++N+V MGMGEPL N + V + I S +GL S +IT+ST G VP + V V
Sbjct: 249 LTNLVFMGMGEPLHNTEAVLAAADIVSHYLGLHISHNKITISTVGLVPEMRAVLARTRVQ 308
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP------------------------ 274
+A+SLHA ++++R+ +VP+NR+Y L L A
Sbjct: 309 VALSLHATTDEVRDWIVPVNRRYDLATLTAALEEMFPKEEEAAIGSLSSSDEAAAAAAGK 368
Query: 275 -GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKD 333
R + EY ML GIND+ DA L +L+ + K+NLI FNP G + S +D
Sbjct: 369 GSSKEGRSLLVEYTMLHGINDTLDDAHRLADMLRRVNCKVNLIVFNPHKGTRFQPSTDED 428
Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
I F + RSG IR RG D +AACGQL +
Sbjct: 429 ISAFRSALIRSGMVCTIRDSRGDDEMAACGQLGN 462
>gi|154491020|ref|ZP_02030961.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC
43184]
gi|154088768|gb|EDN87812.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC
43184]
Length = 286
Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats.
Identities = 110/311 (35%), Positives = 162/311 (52%), Gaps = 25/311 (8%)
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ ++F + D S DGT K+L G +E+VYIP + R TLCVSSQVG
Sbjct: 1 MEKNFEVGAVPPSDLMKSVDGTIKYLYP-----AGPGNFVESVYIPTEDRATLCVSSQVG 55
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC TG Q +NL+A EIL Q+ +++NIV
Sbjct: 56 CKMNCLFCMTGKQGFTKNLSANEILNQI-------------------QSLPETEELTNIV 96
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N D + K L I + S G ++S +RIT+ST G + R EE LA+SL
Sbjct: 97 FMGMGEPLDNVDELFKVLEILTASYGYAWSPKRITVSTIGVAKGLKRFLEESDCHLAVSL 156
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ D R L+P+ + +P +I+ + Y ++ RR++FEY++ K +ND + A L+
Sbjct: 157 HSPYPDERRSLMPVEKAFPACDIIETIKQY-DFTHQRRVSFEYIVFKNLNDDLQHAKALV 215
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+L +P ++NLI F+ P SD + F + + +G IR RG DI AACG
Sbjct: 216 CLLDKVPCRVNLIRFHAIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACG 275
Query: 364 QLKSLSKRIPK 374
L + K+ +
Sbjct: 276 MLSTAKKQQKE 286
>gi|226950274|ref|YP_002805365.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A2 str. Kyoto]
gi|226842506|gb|ACO85172.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A2 str. Kyoto]
Length = 344
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + + +P R Q+ K I+ + I +F M + + +R L F ++
Sbjct: 11 MKQIVSNLKLPD----YRYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFRKNVSSVI 66
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+S Q GC C FC TG+
Sbjct: 67 PVFSQDS---KQAQKLLFELTDGERIEAVGLKYKQGWESFCISCQCGCGFGCRFCATGSV 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNDHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK +
Sbjct: 225 PINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++G S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338
>gi|312903419|ref|ZP_07762599.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|310633295|gb|EFQ16578.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
Length = 349
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 109/368 (29%), Positives = 182/368 (49%), Gaps = 41/368 (11%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74
++E L + P R QI I+ I +F ++ + + +R +L + F SI+
Sbjct: 10 IQEFLKQNKFPN----YRMKQITNAIFPGRINNFNEITVLPKSLRDMLIEEFGESILNIV 65
Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
+ + S ++ I G +IETV + K+ + C+SSQ GC+ C FC T
Sbjct: 66 PLKAQQSTQVSKVL------FGISGDEKIETVNMKYKAGWESFCISSQCGCNFGCKFCAT 119
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G L RNLT++EI Q+L G I +I MGMGE L N
Sbjct: 120 GDIGLKRNLTSDEITDQILY------------------FHLQGHSIDSISFMGMGEALAN 161
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
V +L++ +D + S RR+++ST G +PNI ++ + V L SLH+ N+ R+
Sbjct: 162 V-QVFDALNVLTDPALFALSPRRLSISTIGIIPNIKKLTQNYPQVNLTFSLHSPFNEQRS 220
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--- 309
L+PIN +YPL ++D + +++ ++ Y+ML G+NDS A ++ +L+G
Sbjct: 221 ELMPINERYPLSDVMDTLDEHIRVTSR-KVYIAYIMLHGVNDSIEHAKEVVNLLRGRYRS 279
Query: 310 --PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+N+I +NP + +++K +V F + +K +G IR+ G+DI AACGQL
Sbjct: 280 GNLYHVNIIRYNPTVSSRMRFEEANEKCLVNFYKELKSAGIKVTIRSQFGIDIDAACGQL 339
Query: 366 KSLSKRIP 373
++
Sbjct: 340 YGNYQKTN 347
>gi|168179276|ref|ZP_02613940.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum NCTC 2916]
gi|182669853|gb|EDT81829.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum NCTC 2916]
Length = 344
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + + +P R Q+ K I+ + I +F M + + +R L F ++
Sbjct: 11 MKQIVSNLKLPD----YRYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFGKNVSSVI 66
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+S Q GC C FC TG+
Sbjct: 67 PVFSQDS---KQAQKLLFELTDGERIEAVGLKYKQGWESFCISCQCGCGFGCRFCATGSV 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNDHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK +
Sbjct: 225 PINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++G S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338
>gi|187776707|ref|ZP_02993180.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC
15579]
gi|187775366|gb|EDU39168.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC
15579]
Length = 344
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 100/355 (28%), Positives = 164/355 (46%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + + +P R Q+ K I+ + I +F+ M + + +R L F ++
Sbjct: 11 IKQIVSNLKLPD----YRYEQLTKAIFHQRIDNFEDMHILPKALRMALVNEFGKNVSSVI 66
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+SSQ GC C FC TG+
Sbjct: 67 PVFSQDS---KQAQKLLFELTDGERVEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSA 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNDHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I R+ +E V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDENLFGLSQRRITISTIGIIPRIQRLTKEFPQVNLAFSLHSPFESQRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK +
Sbjct: 225 PINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++G S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSSAIKQFCNTLKKAGISATVRTQFGSEISAACGQL 338
>gi|298708530|emb|CBJ49163.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 425
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 115/381 (30%), Positives = 181/381 (47%), Gaps = 37/381 (9%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQG----MSDISQEVRHL 63
L+ + +EL + L G R +W + G+ F ++D + +
Sbjct: 63 DLLSLNFDELSQILGGSG--------RAKMVWSAL-SAGVDPFGDAAEFLTD---KTAAV 110
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + ++V E +S GTRK L++ V I + SR T+CVSSQ+G
Sbjct: 111 LKDTVERLPWQVVRESVSSCGTRKLLVQLEDGLEVETVVIPDL---SGSRSTVCVSSQIG 167
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+ C FC TG LVRNLTA EIL QV AR + + ++N V
Sbjct: 168 CAKNCQFCMTGKMGLVRNLTAGEILGQVFFARETVREHGMP-------------PLTNAV 214
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
MGMGEPL N V +SL + + + +K +I++ST G P R + + LA S+
Sbjct: 215 YMGMGEPLDNPGAVTQSLQVLTHPFAFAMAKSKISVSTVGPSPAAIRRMKGMPSRLAWSV 274
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA ++D+R +LVP + + L DA + E V+++G+NDSP A L
Sbjct: 275 HAATDDVRRLLVPTTV-HSMAELRDAFAEVLQSRRREHLFVEVVLIEGMNDSPELARALA 333
Query: 304 KILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+L+ +P A INL+P+N + S ++ + F + + G+ + IRT RG + +A
Sbjct: 334 SLLRPLPIRAGINLLPYNDTGHPFFRASPKESVEEFQRVLTQEGFVATIRTARGDEESSA 393
Query: 362 CGQLK--SLSKRIPKVPRQEM 380
CGQL + ++R K +
Sbjct: 394 CGQLATTANNERALKQRHRRS 414
>gi|225428987|ref|XP_002265287.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera]
gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats.
Identities = 104/366 (28%), Positives = 163/366 (44%), Gaps = 44/366 (12%)
Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
EL GI + IWK++ D+ ++ + LL HF +
Sbjct: 11 ELRRQFHSAGISPNFIPF----IWKYVVQNPNCDWDDITSLPSAAYPLLRSHFKPSTSSL 66
Query: 76 VDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEK------------SRGTLCVSSQV 122
S + T K L++ VE + + R TLC+SSQV
Sbjct: 67 HTVIDSSDNVTTKLLIKLQNGSF---VEAVIMRYDTRLGKYGGKPRPGGPRSTLCISSQV 123
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC TG+ NL++ EI+ Q++ A +I N+
Sbjct: 124 GCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASHF-------------------SQIRNV 164
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
V MGMGEPL N+ + +++ S ++IT+ST G + I ++ + + LA+
Sbjct: 165 VFMGMGEPLNNYSALVEAI-HIMQGSPFQLSPKKITVSTVGIIHAINKLQSDLPNLNLAV 223
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA D+R ++P R +PLE L+D R Y S ++I EY+ML +ND + A
Sbjct: 224 SLHAPVQDIRCQIMPAARAFPLEKLMDTLRTYQTNS-GQKIFIEYIMLDEVNDEEQHAHQ 282
Query: 302 LIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
L K+L+ +NLIPFNP + S ++ + F + ++ + +R G DI
Sbjct: 283 LGKLLETFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILRGTYNIRTTVRKQMGQDIS 342
Query: 360 AACGQL 365
ACGQL
Sbjct: 343 GACGQL 348
>gi|322807173|emb|CBZ04747.1| putative florfenicol resistance protein [Clostridium botulinum
H04402 065]
Length = 344
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 101/355 (28%), Positives = 161/355 (45%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + +P R Q+ K I+ + I +F M + + +R L F +
Sbjct: 11 MKQIASNLKLPD----YRYEQLTKAIFHQRINNFDDMHILPKTLRIALVNEFGKN---VS 63
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+SSQ GC C FC TG+
Sbjct: 64 SVTPIFSQDSKQAQKLLFELTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSA 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNNHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I R+ +E V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKEFSQVNLAFSLHSPFESQRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A +I +LK +
Sbjct: 225 PINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVIGLLKNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++G S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338
>gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana]
gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana]
gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 372
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 115/391 (29%), Positives = 179/391 (45%), Gaps = 50/391 (12%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+K +S+ E++ GI + QIWK++ + + + L
Sbjct: 1 MKLKSVFDAS--EIKSEFESAGINP---KF-AIQIWKYVIQNPDCVWDEIPSLPSAAYSL 54
Query: 64 LNQHF-SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-------- 114
L+ F ++ S T K L++ +E V + +R
Sbjct: 55 LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKPR 109
Query: 115 ------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
TLC+SSQVGC + C+FC TGT NLT+ EI+ Q++ A +
Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIAD--------- 160
Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
I NIV MGMGEPL N++ V +++ + + S +RIT+ST G V I
Sbjct: 161 ----------IRNIVFMGMGEPLNNYNAVVEAVRVML-NQPFQLSPKRITISTVGIVHAI 209
Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
++ + GV LA+SLHA ++R ++P R +PL+ L+DA + + S ++I EY+
Sbjct: 210 NKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYI 268
Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SG 345
ML G+ND + A L ++LK INLIPFNP ++ S + + F + ++
Sbjct: 269 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYK 328
Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
+ IR G DI ACGQL I K P
Sbjct: 329 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 359
>gi|330894491|gb|EGH27152.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020]
Length = 249
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 112/239 (46%), Positives = 145/239 (60%), Gaps = 12/239 (5%)
Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
LTA E++ QV +A G P D R I+N+VMMGMGEPL NFDNV ++
Sbjct: 1 LTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMMGMGEPLLNFDNVIAAM 50
Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
+ D +G SKRR+TLSTSG VP I + + I V LA+SLHA ++ LRN LVPIN+KY
Sbjct: 51 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 110
Query: 262 PLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
PL+ML+D+CR Y +R+ T EY MLK IND A+ +I++LK P KINLIPFNP
Sbjct: 111 PLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 170
Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQ 378
+P Y I F + + ++GY+ +RT RG DI AACGQL R + R
Sbjct: 171 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSERY 229
>gi|153939955|ref|YP_001392137.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum F str. Langeland]
gi|205829642|sp|A7GH77|CFR_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|152935851|gb|ABS41349.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum F str. Langeland]
gi|295320142|gb|ADG00520.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum F str. 230613]
Length = 344
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + + +P R Q+ K I+ + I +F M + + +R L F ++
Sbjct: 11 MKQIVSNLKLPD----YRYEQLTKAIFHQRIDNFDDMHILPKVLRMSLVNEFGKNVSSVI 66
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+SSQ GC C FC TG+
Sbjct: 67 PVFSQDS---KQAQKLLFELTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSA 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNDHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I + ++ V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQSLTQKFPQVNLAFSLHSPFESQRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK +
Sbjct: 225 PINKRFPLNQVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++G S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSNAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338
>gi|170758262|ref|YP_001788180.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A3 str. Loch Maree]
gi|205829643|sp|B1KZ37|CFR_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|169405251|gb|ACA53662.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 344
Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 98/355 (27%), Positives = 163/355 (45%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + + +P R Q+ K I+ + I +F + + + +R L F ++
Sbjct: 11 MKQMVSNLKLPD----YRYEQLTKAIFHQRIDNFDDIHILPKALRMSLVNEFGKNVSSVI 66
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+SSQ GC C FC TG+
Sbjct: 67 PVFSQDS---KQARKLLFELTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSA 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNNHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKKFPQVNLAFSLHSPFESQRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK +
Sbjct: 225 PINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++G S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338
>gi|170754770|ref|YP_001782469.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum B1 str. Okra]
gi|205829627|sp|B1IL14|CFR_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|169119982|gb|ACA43818.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum B1 str. Okra]
Length = 344
Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 98/355 (27%), Positives = 163/355 (45%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + + +P R Q+ K I+ + I +F + + + +R L F ++
Sbjct: 11 MKQMVSNLKLPD----YRYEQLTKAIFHQRIDNFDDIHILPKALRMSLVNEFGKNVSSVI 66
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+SSQ GC C FC TG+
Sbjct: 67 PVFSQDS---KQAQKLLFELTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSA 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNNHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKKFPQVNLAFSLHSPFESRRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK +
Sbjct: 225 PINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++G S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338
>gi|240147073|ref|ZP_04745674.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
gi|257200758|gb|EEU99042.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
Length = 265
Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats.
Identities = 92/289 (31%), Positives = 153/289 (52%), Gaps = 29/289 (10%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L
Sbjct: 4 EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59
Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
+ + + ++S DGTRK+L IE+V + K ++C+SSQVG
Sbjct: 60 KKECHFVSLKQEAVQVSKIDGTRKYLFAL-----DDGNVIESVLMRYKHGNSVCISSQVG 114
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C FC + LVR LT E+L Q+ G +++N+V
Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITR-----------------DTGERVANVV 157
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
+MG GEP+ NFDN+ K + + +D GL+ S+R +T+ST G VP + + ++ + LA+S
Sbjct: 158 VMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
LHA S + R L+PI KY + +I+ACR+Y + RR+TFEY ++ G
Sbjct: 218 LHASSQEKRLELMPIANKYEIHEVIEACRYYFEQT-GRRVTFEYSLVGG 265
>gi|154685028|ref|YP_001420189.1| florfenicol/chloramphenicol resistance like protein [Bacillus
amyloliquefaciens FZB42]
gi|205829624|sp|A7Z1T2|CFR_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|154350879|gb|ABS72958.1| florfenicol/chloramphenicol resistance like protein [Bacillus
amyloliquefaciens FZB42]
Length = 349
Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats.
Identities = 105/368 (28%), Positives = 179/368 (48%), Gaps = 41/368 (11%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74
++E L + P R +QI ++ I F ++ + + +R LL + F SI+
Sbjct: 10 IQEFLKQNKFPD----FRMNQIKNAVFQGRINHFNEITVLPKSLRKLLIEEFGESILNIA 65
Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
+ + S T+ I G +IETV + K+ + C+SSQ GC C FC T
Sbjct: 66 PLKVQHSEQVTKVL------FEISGDEKIETVNMKYKAGWESFCISSQCGCHFGCKFCAT 119
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G L RNLT++E+ Q+L G I +I MGMGE L N
Sbjct: 120 GDIGLKRNLTSDEMTDQILY------------------FHLKGHSIDSISFMGMGEALAN 161
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
V +L + ++ + S RR+++ST G +P I ++ ++ V L SLH+ N+ R+
Sbjct: 162 V-QVFDALHVLTNPELFALSPRRLSISTIGIIPGIKKITQDYPQVNLTFSLHSPFNEQRS 220
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--- 309
L+PIN +YPL ++D + +++ ++ Y+ML G+NDS A ++ +L+
Sbjct: 221 KLMPINERYPLLEVMDTLDEHIRVTSR-KVYIAYIMLPGVNDSIDHANEVVNLLRSRYKR 279
Query: 310 --PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+N+I +NP + ++K +V F + +K +G + +R+ G+DI AACGQL
Sbjct: 280 GNLFHVNIIRYNPTVSSPMRFEEVNEKQVVNFYKKLKSAGINVTVRSQFGIDIDAACGQL 339
Query: 366 KSLSKRIP 373
++
Sbjct: 340 YGNYQKNK 347
>gi|303271119|ref|XP_003054921.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462895|gb|EEH60173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 327
Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 99/327 (30%), Positives = 158/327 (48%), Gaps = 14/327 (4%)
Query: 54 SDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIE-TVYIPEK 111
+++ + +N F+++ + + S T K ++ V + ++ +
Sbjct: 1 TEVPKFAVEGVNDAFALMTTTVAECHTSKDGSTTKMVVELQDGHRVEAVVMRHAIHEGGR 60
Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
R TLCVSSQVGC + C+FC TGT + NLT EIL Q++ A+ L + +G
Sbjct: 61 ERNTLCVSSQVGCKMGCTFCATGTLGELGNLTCGEILEQLVHAQRLFRGDGDGDGGDGDG 120
Query: 172 IPSVGRK--------ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
+ R I+N+V MGMGEPL N+D V +L +D + + R+T+ST G
Sbjct: 121 GGASRRVSGRRRGGGITNLVFMGMGEPLNNYDAVIAALGPITDPKLFALAPSRVTVSTVG 180
Query: 224 FVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
VP + + + GV LA+SLHA + LR +VP R Y L L++A Y +
Sbjct: 181 VVPRMKTLTRDAPGVALALSLHAPNQALRESIVPTARAYKLPALMEAMDKYLASGPKVKT 240
Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECI 341
EY +L+G+ND A L ++L+G +N IP+NP + ++ + + +
Sbjct: 241 MVEYCVLRGVNDGVEHARELGELLRGRDVIVNFIPYNPTDVPMGHAPPTKEAVKAMVDVL 300
Query: 342 K--RSGYSSPIRTPRGLDILAACGQLK 366
G + +R G DI ACGQL
Sbjct: 301 TGPEFGQFTTVRHEMGQDIAGACGQLA 327
>gi|212634296|ref|YP_002310821.1| hypothetical protein swp_1448 [Shewanella piezotolerans WP3]
gi|212555780|gb|ACJ28234.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 242
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 106/248 (42%), Positives = 145/248 (58%), Gaps = 16/248 (6%)
Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
++ EI+ Q+ +G V + R I+N+VMMGMGEPL N NV ++
Sbjct: 1 MSVSEIVGQIWRVADFIG----------FVKDTGERPITNVVMMGMGEPLLNLKNVIPAM 50
Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
I D G S SKRR+T+STSG VP + +G+ + V LA+S+HA +++LR++LVP+N+KY
Sbjct: 51 DIMLDDFGFSLSKRRVTVSTSGVVPALDILGDALDVALAVSIHAPNDELRDVLVPVNKKY 110
Query: 262 PLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
PLE + R Y SN R+T EYVML INDS A L K++K P K+NLIPFN
Sbjct: 111 PLEDFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDTPCKVNLIPFN 170
Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS----LSKRIPKV 375
P+PG Y S I FS+ + G + +R RG DI AACGQL +KR+ K
Sbjct: 171 PYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRLAKK 230
Query: 376 PRQEMQIT 383
Q+ QI+
Sbjct: 231 QMQQNQIS 238
>gi|299535922|ref|ZP_07049242.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
fusiformis ZC1]
gi|298728674|gb|EFI69229.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
fusiformis ZC1]
Length = 286
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 91/272 (33%), Positives = 148/272 (54%), Gaps = 24/272 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
KES+ + +LEE L + G R +QI+ W+Y + ++ F+ MS++S+ +R L
Sbjct: 34 KESIYSLQPHQLEEWLTENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLREKLT 89
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F++ + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQLQ-----DGYSIETVLMRHEYGNSVCVTTQVGCR 144
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L R+L A EI+ QV+ + L + G ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDEL--------------GERVSHIVIM 190
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
G+GEP N+D + L + + GL+ R IT+STSG VP I + +E + A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
A + + R L+PI R Y LE L+DA R+Y
Sbjct: 251 APNQEARQKLMPIARAYKLEELMDAVRYYTKK 282
>gi|297621026|ref|YP_003709163.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia
chondrophila WSU 86-1044]
gi|297376327|gb|ADI38157.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia
chondrophila WSU 86-1044]
Length = 359
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 117/370 (31%), Positives = 185/370 (50%), Gaps = 36/370 (9%)
Query: 7 ESLIGMMREELEEALLKI---GIPQRHVRMRTSQIWKWIYVRGIRDFQ-GMSDISQEVRH 62
++ RE +A+ K G+ + R +W+ + + +
Sbjct: 2 IPILSHTRESYSQAVAKALGKGLQHAALLYR-----EWMRTGNVSSKHPAFYNAPL-LYE 55
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ Q PEI +++ RK L+RF +E+V IP + +LCVSSQ
Sbjct: 56 EILQVTDFSLPEI-SHQLTDGDVRKLLIRF-----DDGNVVESVVIPMQFGLSLCVSSQA 109
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C+FC TG L R+L +EEI+ Q +AR +L I NI
Sbjct: 110 GCRMGCTFCQTGRIGLKRHLRSEEIVAQGFIARHVLRL-----------------PIRNI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLA 240
V MGMGEP+ NFD V +++ + SD G++F R +T+ST G V I R E+ LA
Sbjct: 153 VFMGMGEPMDNFDAVSQAIKVFSDQGGMAFGMRHLTVSTVGRVDGIRRFVSEVNPAVNLA 212
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+S++A ++ LR L+P+ RKY L + +A Y R + YV++KG+NDS A
Sbjct: 213 VSINAPNDALRKTLMPLTRKYSLGTIKEALLDYCS-HPRRSVLIGYVLIKGVNDSLELAD 271
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
L +KG+ AK+NLIP+NP Y + + + F+ ++ G S+ +R +G +++A
Sbjct: 272 ELAAYIKGLRAKVNLIPYNPQESDPYETPESESVNAFAARLRAQGVSTLLRQTKGDEMMA 331
Query: 361 ACGQLKSLSK 370
ACGQL ++K
Sbjct: 332 ACGQLGGVNK 341
>gi|195953765|ref|YP_002122055.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1]
gi|195933377|gb|ACG58077.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1]
Length = 340
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 120/354 (33%), Positives = 181/354 (51%), Gaps = 35/354 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
LE+ + + R SQI W + + I D + M+DI + +R L F ++
Sbjct: 5 LEDYF-NLEQKLNLEKYRISQIKSWAFKKKITDIELMTDIPKSLRQELKIDFHVLSL--- 60
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
D + + + K++ + +E+V I EK TLC+S+Q+GC++ C FC +
Sbjct: 61 DSFLEGEDSTKFVFKTK-----DGYFVESVLIKEKDHYTLCISTQIGCAVGCKFCVSTIG 115
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
L+RNL+ EI+ Q L F I NIV MGMGEPL NF+N
Sbjct: 116 GLLRNLSFSEIVDQYFYISILRNTF-----------------IRNIVFMGMGEPLANFEN 158
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAISLHAVSNDLRNI 253
+KK+ I SKR IT+STS + I ++ E+ + LAISL+A ++ R
Sbjct: 159 LKKASFIFLKE--FELSKRHITISTSAYTNYIKKLKEDSFLNKLNLAISLNASDDETRKA 216
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK- 312
L+P N L+ L + + YP L RRIT EYV++K IN S +DA NL+ +LK + K
Sbjct: 217 LMP-NVIGSLKELFEILKTYP-LEPRRRITIEYVLIKDINSSLKDAKNLVNLLKNLKHKT 274
Query: 313 -INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+NLIP+N P + + DI F + + ++ S IR +GL++ AACG L
Sbjct: 275 KVNLIPYNENPMLSFERPVESDIYRFQQELLKNDISCTIRWSKGLELAAACGHL 328
>gi|148380815|ref|YP_001255356.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A str. ATCC 3502]
gi|153933477|ref|YP_001385100.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A str. ATCC 19397]
gi|153935966|ref|YP_001388569.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A str. Hall]
gi|205829639|sp|A7FX96|CFR_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|205829640|sp|A5I5U3|CFR_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA m8A2503 methyltransferase
gi|148290299|emb|CAL84423.1| putative florfenicol resistance protein [Clostridium botulinum A
str. ATCC 3502]
gi|152929521|gb|ABS35021.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A str. ATCC 19397]
gi|152931880|gb|ABS37379.1| florfenicol/chloramphenicol resistance protein [Clostridium
botulinum A str. Hall]
Length = 344
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 100/355 (28%), Positives = 161/355 (45%), Gaps = 33/355 (9%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ + +P R Q+ K I+ + I +F M + + +R L F +
Sbjct: 11 MKQIASNLKLPD----YRYEQLTKAIFHQRIDNFHDMHILPKALRIALVNEFGKN---VS 63
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
K + G ++ + C+SSQ GCS C FC TG+
Sbjct: 64 SVTPIFSQDSKQAQKLLFELTDGERIEAVGLKYKQGWESFCISSQCGCSFGCRFCATGSA 123
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
RNLTA+EI Q+L ++++I MGMGE N +
Sbjct: 124 GFKRNLTADEITDQLLY------------------FYFNDHRLNSISFMGMGEAFANPE- 164
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILV 255
+ ++ I +D S+RRIT+ST G +P I R+ +E V LA SLH+ R+ L+
Sbjct: 165 LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKEFPQVNLAFSLHSPFESQRSDLM 224
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---- 311
PIN+++PL ++ + + RR+ Y+ML+GINDS A +I +L+ +
Sbjct: 225 PINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAIIGLLRNRGSWEHL 283
Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+LIP+N + I F +K++ S+ +RT G +I AACGQL
Sbjct: 284 YHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKASISATVRTQFGSEISAACGQL 338
>gi|282895427|ref|ZP_06303564.1| Putative uncharacterized protein [Raphidiopsis brookii D9]
gi|281199460|gb|EFA74323.1| Putative uncharacterized protein [Raphidiopsis brookii D9]
Length = 300
Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats.
Identities = 107/309 (34%), Positives = 156/309 (50%), Gaps = 31/309 (10%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
G +EL + + G P R Q+ WIY G+ +S + R + SI
Sbjct: 22 GASVDELTTWVQQQGQPG----YRGKQLHNWIYHHGVHRISDISVFPKTWREQVTDV-SI 76
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
+ + + DGT K+LL IETV IP R T+CVS+QVGC + C F
Sbjct: 77 GRSSVNYQCSATDGTVKYLLNL-----ADGEIIETVGIPSDKRLTVCVSTQVGCPMACDF 131
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
C TG RNL EI+ QVL + +++S++V MGMGEP
Sbjct: 132 CATGKGGFKRNLNRGEIVDQVLTVQEDF-----------------QQRVSHVVFMGMGEP 174
Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
L N +NV +L + +G+ +R +T+ST G I ++ E V LA+SLHA +
Sbjct: 175 LLNTENVILALKCLNQDLGIG--QRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQI 232
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
LR ++P + YP+E L+ CR Y ++ RR+TFEY++L G+ND P AL L + L+G
Sbjct: 233 LREQIIPSAKTYPIEQLLAECRQYVEIT-GRRVTFEYILLSGVNDLPEQALELSQRLRGF 291
Query: 310 PAKINLIPF 318
+ +NLIP
Sbjct: 292 QSHVNLIPL 300
>gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa]
gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats.
Identities = 108/378 (28%), Positives = 173/378 (45%), Gaps = 48/378 (12%)
Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
++ K GI + IWK++ ++ + D+ LL F
Sbjct: 10 PDVRAEFEKAGINTHFIPF----IWKYVIKNPNCEWDDIPDLPSAAYSLLRSKFKTSTSS 65
Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEK--------------SRGTLCVS 119
+ S T K L++ +E V + R TLC+S
Sbjct: 66 VDSVINSNDGVTTKLLVKLQ-----NGAFVEAVIMRYDTRLGKYCGKPRPGGPRSTLCIS 120
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + C FC TG+ NL++ EI+ Q++ A S +I
Sbjct: 121 SQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHA-------------------SCLSQI 161
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
N+V MGMGEPL N+ + +++ A + S +RIT+ST G + I ++ ++ G+
Sbjct: 162 RNVVFMGMGEPLNNYSALVEAVR-AMSGVPFQLSPKRITVSTVGIIHAINKLHKDLPGLN 220
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLHA D+R ++P R +PLE L+DA + Y S ++I EY+ML G+ND +
Sbjct: 221 LAVSLHAPVQDVRCQIMPAARAFPLEKLMDALQVYQKNS-MQKIFIEYIMLDGVNDEEQH 279
Query: 299 ALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGL 356
A L K+L+ +NLIPFNP ++ S ++ ++ F + ++ + + +R G
Sbjct: 280 AHQLGKLLETFDVVVNLIPFNPIGSLSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQ 339
Query: 357 DILAACGQLKSLSKRIPK 374
DI ACGQL K
Sbjct: 340 DISGACGQLVVNLPDEKK 357
>gi|325192828|emb|CCA27229.1| hypothetical protein SELMODRAFT_122498 [Albugo laibachii Nc14]
Length = 424
Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats.
Identities = 107/347 (30%), Positives = 171/347 (49%), Gaps = 32/347 (9%)
Query: 29 RHVRM---RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85
+ IW+ F + ++ ++ L ++F++ + +++IS DGT
Sbjct: 24 EQNKFKNIHAQAIWREFSHNINHSFHEIPNLPLRLQQSLRENFTVCTLSLSEKQISKDGT 83
Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
K L + +E+V + K R LCVSSQVGC + C+FC TGT ++ +L +
Sbjct: 84 IKLLFKTQ-----DGHGVESVIMKHKGRNMLCVSSQVGCQMGCTFCATGTMGIIADLCSG 138
Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
EIL Q+ A + +I N+V MGMGEPL N+D V ++ +
Sbjct: 139 EILEQLAFANTFA-------------------RIRNVVFMGMGEPLQNYDEVIAAIKAMT 179
Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLE 264
GL+ + +TLST G + I ++ ++ V LA+SLHA + +LR+ +VP ++ +PLE
Sbjct: 180 SVFGLA--PKHVTLSTVGVIHRIQQLNRDVPLVRLALSLHAPTQELRSQIVPSSKAFPLE 237
Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-G 323
L+ A + R + EY MLKGINDS A L K+L+ INLIP+N
Sbjct: 238 KLMQAIDDHLASREHRVVLIEYCMLKGINDSIETAHLLGKLLQDRSVHINLIPYNTTDVD 297
Query: 324 CEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGLDILAACGQLKSLS 369
++ +DI F ++ + +R G+DI ACGQL +
Sbjct: 298 AQFSSPSDQDIRNFQSILRQDYNLKATVRENHGMDIEGACGQLALKT 344
>gi|9294428|dbj|BAB02548.1| unnamed protein product [Arabidopsis thaliana]
Length = 382
Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats.
Identities = 110/391 (28%), Positives = 175/391 (44%), Gaps = 40/391 (10%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+K +S+ E++ GI + QIWK++ + + + L
Sbjct: 1 MKLKSVFDAS--EIKSEFESAGINP---KF-AIQIWKYVIQNPDCVWDEIPSLPSAAYSL 54
Query: 64 LNQHF-SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-------- 114
L+ F ++ S T K L++ +E V + +R
Sbjct: 55 LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKPR 109
Query: 115 ------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
TLC+SSQVGC + C+FC TGT NLT+ EI+ Q++ A + +
Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIADIRNIVFMLL 169
Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
GMGEPL N++ V +++ + + S +RIT+ST G V I
Sbjct: 170 PWFDDCD---------QGMGEPLNNYNAVVEAVRVML-NQPFQLSPKRITISTVGIVHAI 219
Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
++ + GV LA+SLHA ++R ++P R +PL+ L+DA + + S ++I EY+
Sbjct: 220 NKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYI 278
Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SG 345
ML G+ND + A L ++LK INLIPFNP ++ S + + F + ++
Sbjct: 279 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYK 338
Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
+ IR G DI ACGQL I K P
Sbjct: 339 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369
>gi|149197716|ref|ZP_01874766.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
gi|149139286|gb|EDM27689.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
Length = 343
Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats.
Identities = 109/313 (34%), Positives = 162/313 (51%), Gaps = 20/313 (6%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L+ HF I +I+ + S + + G + R +LC+SSQ
Sbjct: 49 ELVRDHFEIPQLKIISRQDSKIDG---ASKLLVQTEDGLNIETVILRIGTGRTSLCISSQ 105
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC+ C+FC T T RNLT EI+ QV+LA +L RK+ N
Sbjct: 106 AGCTEKCTFCSTATLGFKRNLTLAEIIGQVILAGEILR--------------KEDRKVRN 151
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240
IV MGMGEPL N DNV KSL I S + S +R+T+ST G NI ++ V LA
Sbjct: 152 IVFMGMGEPLRNTDNVLKSLEIMLSSAYMGLSSKRVTVSTIGITDNITKLRHSFPEVNLA 211
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA ++ +R+IL+PIN+ +P+E + + L++ + +Y+++K +NDSP A
Sbjct: 212 LSLHASNDQVRDILMPINKTFPMETIKETLLSAQELASGD-LMIQYLLIKDLNDSPEQAQ 270
Query: 301 NLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
L LKGI INLIP+N G + CS ++ + F + ++ S + R G DI
Sbjct: 271 ELAAFLKGINCIINLIPYNDSMGMGNWKCSSEEKMSAFQDVLQESDFQVTRRHSLGRDID 330
Query: 360 AACGQLKSLSKRI 372
AACGQL + +++
Sbjct: 331 AACGQLAAKNQKK 343
>gi|145344512|ref|XP_001416775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577001|gb|ABO95068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 298
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 97/319 (30%), Positives = 142/319 (44%), Gaps = 28/319 (8%)
Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
+ + V L +F + ++ E S T K ++ GG V V K R
Sbjct: 1 LPRAVVDALRANFVLYTTKVRHESRSGDGTTTKMIVELA----GGDVVEACVMRHAKGRT 56
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
TLCVSSQVGC + C+FC TGT + NL+A EI Q+ A
Sbjct: 57 TLCVSSQVGCKMGCTFCATGTLGELGNLSAGEICEQLAHASR------------------ 98
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
G + N+V MGMGEPL N+ NV ++ + G S +IT+ST G +P + + +
Sbjct: 99 -GDAVRNVVFMGMGEPLNNYRNVIDAIEAMTSDKGFGLSPAKITVSTVGVIPRMRTLRRD 157
Query: 235 IGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
LA+SLHA + LR +VP Y LE L+ + + EY +L G+N
Sbjct: 158 APGTRLALSLHAPNQALRQKIVPTATAYKLEDLMATLDEHMASGPKMKTMIEYCVLGGVN 217
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIK--RSGYSSPI 350
D A L +L+G +NLIP NP ++ ++ + E + + +
Sbjct: 218 DDEACARELGALLRGKEVIVNLIPLNPTDTPAGHVPPTREAVQKMLEILTSPEFDLFTTV 277
Query: 351 RTPRGLDILAACGQLKSLS 369
R G DI ACGQL +
Sbjct: 278 RHEMGQDIAGACGQLALKT 296
>gi|302851668|ref|XP_002957357.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f.
nagariensis]
gi|300257316|gb|EFJ41566.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f.
nagariensis]
Length = 307
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 107/300 (35%), Positives = 157/300 (52%), Gaps = 18/300 (6%)
Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQVGCSLT 127
+ + DGTRK + G + + R T+CVSSQVGC++
Sbjct: 3 LRLSQVARAADGTRKLVFTLTEGEAAGGSVETVLIPIVRQQGLRDRLTICVSSQVGCAMN 62
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FCYTG L+ NLT +I+ QV+ AR L ++N+V MGM
Sbjct: 63 CQFCYTGRMGLLGNLTTAQIVEQVVEARRFLAQEGERTQ------------LTNLVFMGM 110
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
GEPL N + V + I S +GL S ++T+ST G VP + V V +A+SLHA +
Sbjct: 111 GEPLHNTEAVLAAADIVSHYLGLHISHNKVTISTVGLVPEMRSVVARSRVQMALSLHATT 170
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
+++R+ +VP+NR+Y L L A G S++R + EY ML GIND+ +DA L+ +L
Sbjct: 171 DEVRDWIVPVNRRYDLATLTAALEE-LGNSSSRSLLIEYTMLHGINDTLQDAHRLVAMLA 229
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
+ K+NLI FNP G + S ++ + F + ++G IR RG D +AACGQL +
Sbjct: 230 RVNCKVNLIMFNPHAGTRFQPSTEEAVTAFRSALVQAGMVCTIRDSRGDDEMAACGQLGN 289
>gi|326434869|gb|EGD80439.1| radical SAM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/391 (29%), Positives = 183/391 (46%), Gaps = 55/391 (14%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
G++ EE K+GI +H ++W+ I RG+ D + + ++ + + L+ + F I
Sbjct: 18 GLVLEE----CTKLGINHKH----AYKMWRHIIARGVTDVEEIPELPKALYKLVKEKFVI 69
Query: 71 IYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVY--------------------IP 109
++ K S + T K L+R + V +
Sbjct: 70 TTSKLESFKTSADESTTKLLIRLQDGALVETVIMRYGRVELRNFPSDRQRRTEDGETVFA 129
Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
K R T+CVSSQVGC + C+FC TGT L+ NLTA EIL Q+ A
Sbjct: 130 SKERATVCVSSQVGCKMGCTFCATGTMGLLSNLTAGEILEQLYHAN-------------- 175
Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
KI N+V MGMGEPL N+D V ++ +D S S RI +ST G VP +
Sbjct: 176 -----TVEKIRNVVFMGMGEPLDNYDAVVMAVRGMTDVQRFSLSPSRIAVSTVGVVPKML 230
Query: 230 RVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL-----SNARRIT 283
++ E+ V LA+SLHA + +LR +VP + + ++ ++ A ++ S +
Sbjct: 231 KMAEDIPQVGLALSLHAPTQELRAQIVPTAKAWHIDRIMAAMDNFIEHRSQVASRKSHVL 290
Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIK 342
EYV++ +N S A L ++L+G +N+IP+NP +Y + + F+ ++
Sbjct: 291 IEYVLIDNVNSSEEVAHQLGRLLEGREVILNVIPYNPTDVPHDYKAPSSETLEKFNAVLR 350
Query: 343 RSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
+ +R G D+ AACGQL S+R
Sbjct: 351 EYDLRTIVRQELGQDVNAACGQLVISSQRNN 381
>gi|162449851|ref|YP_001612218.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56']
gi|205829637|sp|A9FD89|Y1580_SORC5 RecName: Full=Probable RNA methyltransferase sce1580
gi|161160433|emb|CAN91738.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56']
Length = 398
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 101/295 (34%), Positives = 146/295 (49%), Gaps = 20/295 (6%)
Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
EI + + D T + +LR G IE+V IP +R TLCVSSQVGC+ CSFC
Sbjct: 114 LEIAERAPAQDDTLRLVLR-----AGDGALIESVLIPGPARTTLCVSSQVGCARACSFCE 168
Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
TG L R L A EI+ QV +AR+L + G + N+V MGMGEP
Sbjct: 169 TGRLGLERQLAAGEIVDQVRIARALAAERG-------------GAPLRNLVFMGMGEPFD 215
Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
N V K++ + +D F+ +T+ST G I + LA+SL+A + R
Sbjct: 216 NLGEVLKAIRLLTDPRAFRFAPSHVTVSTVGVADKIEPFFRDARAELAVSLNAPDDARRQ 275
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
++P+N ++ + L +A L RR+ FEYV+ ND+P DA L + G+ +
Sbjct: 276 AIMPVNARFSMAALKEAIAR--ALPPGRRVLFEYVLFDRFNDAPEDADLLAAYVAGLRCR 333
Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
+N+IP NP P + F + G ++ +R PRG D+ ACGQL
Sbjct: 334 VNVIPCNPGPDPALRPPSAARLDAFVARLSGHGVTTLVRRPRGRDVGGACGQLAG 388
>gi|55297177|dbj|BAD68852.1| florfenicol resistance protein-like [Oryza sativa Japonica Group]
Length = 247
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 14/240 (5%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC+TG L ++L+ EI+ Q + AR L D G I+N+V M
Sbjct: 1 MNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------ITNVVFM 46
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N DNV K+ +I D GL FS R++T+STSG VP I R +E LA+SL+A
Sbjct: 47 GMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNA 106
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++++RN ++PINRKY L +L+ R L ++ FEYVML G+NDS DA L+ +
Sbjct: 107 TTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDL 166
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++GIP KINLI FNP G ++ + + I+ F + + G +R RG D +AACGQL
Sbjct: 167 VRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQL 226
>gi|167526355|ref|XP_001747511.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773957|gb|EDQ87591.1| predicted protein [Monosiga brevicollis MX1]
Length = 1527
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 108/362 (29%), Positives = 173/362 (47%), Gaps = 48/362 (13%)
Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCI 97
W+ I G+ + + + ++ +++ ++ + F++ +V E+ S + T K L+
Sbjct: 605 WRAILHNGVTNVRDIPELPKKLYQVIEEKFALTTSRLVKEETSADNTTTKLLIELQDGAQ 664
Query: 98 GGPVEIE--------------------TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
V + V K R T+CVSSQVGC + C+FC TGT
Sbjct: 665 IETVIMRYGRFELRNFPEDAQKKSSDGEVSFVSKERATVCVSSQVGCQMGCTFCATGTMG 724
Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
L+ NL A EIL Q+ A + KI N+V MGMGEPL N+D V
Sbjct: 725 LMSNLAAGEILEQLYHANQV-------------------EKIRNVVFMGMGEPLDNYDAV 765
Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVP 256
+ ++S +D S +I++ST G VP I ++ E++ V LA+SLHA + +LR +VP
Sbjct: 766 RFAVSAMTDVRRFSLGASKISVSTVGVVPRIHQMVEDMPDVGLALSLHAPNQELREEIVP 825
Query: 257 INRKYPLEMLIDACRHYPG------LSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
R + L+ +++A H+ I EYV++ +N + A L +LK
Sbjct: 826 SGRSWHLDRIMEAIDHFQETRQETSRRRRTHILIEYVLIDEVNSTEEVAHQLGHLLKDRD 885
Query: 311 AKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+N+IP+NP +Y + F+E ++ G + IR G D+ AACGQL S
Sbjct: 886 VLVNVIPYNPTDVPHDYKPPSRATTDRFNEIVRSYGLRTIIRQELGQDVNAACGQLVVRS 945
Query: 370 KR 371
+R
Sbjct: 946 QR 947
>gi|168043878|ref|XP_001774410.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674262|gb|EDQ60773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 372
Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 122/371 (32%), Positives = 176/371 (47%), Gaps = 47/371 (12%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
E L+ L +IG+ HV IW + + + + ++ + F +
Sbjct: 11 FDVEVLKWELERIGVKALHV-FT---IWTHVLAHPDTEAHDVPGLPFAAIDMIKEKFKTL 66
Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEK--------------SRGTL 116
++ D++ S T K L++ G +E V + SR TL
Sbjct: 67 TSQVKDQETSADGTTTKLLIQLQ-----GGQSVEAVIMRHDAGAGKYAGGPRQGGSRATL 121
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
CVSSQVGC + C+FC TGT L NL+A EI+ Q++ A +
Sbjct: 122 CVSSQVGCQMGCTFCATGTMGLKGNLSAGEIVEQLVHASQVT------------------ 163
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
I NIV MGMGEPL N+ +V + + I + S IT+ST G +P I + +
Sbjct: 164 -PIRNIVFMGMGEPLNNYKSVVEGIQIMT-GRCFGLSPSHITVSTVGVIPRILSIANDLP 221
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
GV LA+SLHA + +LR +VP + YPL L+ A Y +S RR+ EYVML GINDS
Sbjct: 222 GVNLALSLHAPTQELRCQIVPTAKAYPLHKLMAALNSYQTIS-RRRVLVEYVMLAGINDS 280
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPR 354
A L +LK +NLIP+NP +Y + Q+D+ F + ++ G + IR
Sbjct: 281 DEVAHQLGTLLKDHNVTLNLIPYNPATSSDYKPTSQEDLTRFQKILRGVHGVRTTIRQEM 340
Query: 355 GLDILAACGQL 365
G DI ACGQL
Sbjct: 341 GQDIAGACGQL 351
>gi|330950791|gb|EGH51051.1| radical SAM protein [Pseudomonas syringae Cit 7]
Length = 220
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 103/233 (44%), Positives = 138/233 (59%), Gaps = 19/233 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVS 220
>gi|159463592|ref|XP_001690026.1| predicted protein [Chlamydomonas reinhardtii]
gi|158284014|gb|EDP09764.1| predicted protein [Chlamydomonas reinhardtii]
Length = 374
Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats.
Identities = 113/363 (31%), Positives = 177/363 (48%), Gaps = 39/363 (10%)
Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
A+L + M ++W W+ + + D+ + LL+++F ++V
Sbjct: 15 TNAVLAAFEEENIKPMHALRMWGWLIRNPSATWHDVPDMPKAAVALLDKYFVKFTTKVVK 74
Query: 78 EK-ISCDGTRKWLLRFPARCIGGPVEI-------------ETVYIPEKSRGTLCVSSQVG 123
+ S T K L+ V + + R TLCVSSQVG
Sbjct: 75 CQNSSDGSTTKLLVELQDGMQVEAVVMTYDAPSVTAAGAAAAAAARARKRSTLCVSSQVG 134
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C+FC TGT L +L A EI+ Q++ AR++ +I N+V
Sbjct: 135 CQMGCTFCATGTMGLKGHLNAGEIVEQLVHARAVA-------------------RIRNVV 175
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
MGMGEPL N++ V+ ++++ +DS +R +T+ST G +P I ++ E+ GV LA+S
Sbjct: 176 FMGMGEPLNNYEAVRGAVAMMTDSKYFGLRRRHVTVSTVGVIPRIKQLAEDLPGVSLALS 235
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA + +LR +VP R Y L+ L++A R Y S ++R+ +EYVML G+ND A L
Sbjct: 236 LHAPTQELRLQIVPSARAYKLDKLMEAVRSYQANS-SQRVFYEYVMLSGVNDGEEQAHQL 294
Query: 303 IKILKGIPAKINLIPFNPW---PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGLDI 358
++LKG INLIP+NP G + + TF ++ + G + IR G DI
Sbjct: 295 GQLLKGDDVVINLIPWNPIYQPEGPFFEAPRDGSVGTFQSILRHQYGLHTTIRQEMGQDI 354
Query: 359 LAA 361
A
Sbjct: 355 SGA 357
>gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
Length = 381
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 104/344 (30%), Positives = 157/344 (45%), Gaps = 39/344 (11%)
Query: 38 IWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96
IWK++ D G+ + LL Q F + + R +
Sbjct: 37 IWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTSTL--TAAADSKDRTTTKLLISLQ 94
Query: 97 IGGPVEIETVYIPEKS------------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
G VE + + R TLCVSSQVGC + C FC TGT NL++
Sbjct: 95 NGESVEAVVMRYDTRLGKYDGKPRPGGLRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSS 154
Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
EI+ Q++ A +I N+V MGMGEP+ N++ + +++ +
Sbjct: 155 GEIIEQLVHASRY-------------------SQIRNVVFMGMGEPMNNYNALVEAIGVF 195
Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263
+ S S +RIT+ST G + I + + V LA+SLHA D+R ++P R +PL
Sbjct: 196 TGSP-FQLSPKRITVSTVGIIHGINKFNADLPKVNLAVSLHAPDQDIRCQIMPAARAFPL 254
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
L++A + Y S + I EY+ML G+ND A L K+L+ A +NLIPFNP
Sbjct: 255 VKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPIGS 313
Query: 324 -CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQL 365
+ S +++ F + +K + +R G DI ACGQL
Sbjct: 314 LSNFKTSSDQNVKKFQKVLKGIYHIRTTVRQQMGQDIAGACGQL 357
>gi|254442339|ref|ZP_05055815.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
gi|198256647|gb|EDY80955.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
Length = 342
Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats.
Identities = 116/370 (31%), Positives = 166/370 (44%), Gaps = 35/370 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS--QEVRHL 63
K S+ ++LE+ L G R +R RT Y R+F + ++
Sbjct: 2 KTSIYD--IKKLEKHLRHNGFGARELR-RT-------YRMLFREFTPLENLGWDDAFTAN 51
Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ F Y +V S DG K L P + R ++CVSSQV
Sbjct: 52 FKEQFETSYLTLVSRIDSKIDGATKLLFETPDGKK----IETVILRIATGRTSICVSSQV 107
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC+ C FC TG RNL +EEIL QV+ A +L S R + NI
Sbjct: 108 GCTEKCRFCATGELGFFRNLKSEEILDQVVQAGRILA--------------SEDRSLRNI 153
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEPL N+DN+ ++ F +RIT+S+ G I + + V LA+
Sbjct: 154 VFMGMGEPLRNYDNLVAAMDQLLSEHVFKFVPKRITVSSLGIPELIVKFAQRFPQVSLAL 213
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL+ ++ R+ ++PIN +YP+ L + + EY+M K +NDS DA
Sbjct: 214 SLNGSNDAARSEVMPINNRYPMADLRSMLEQLETIREGI-VMIEYIMFKDLNDSVEDAAK 272
Query: 302 LIKILKGIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
+ L+G+ INLIP+NP +L S + I F ++ GY R G DI
Sbjct: 273 VAAFLRGLAVHINLIPYNPDYSLNKSFLPSSIETIEAFKNHLQSEGYKVTRRFSLGQDIA 332
Query: 360 AACGQLKSLS 369
AACGQL + S
Sbjct: 333 AACGQLANKS 342
>gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group]
Length = 388
Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats.
Identities = 108/368 (29%), Positives = 164/368 (44%), Gaps = 49/368 (13%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
+ GI + + IWK++ D + + LL Q F +
Sbjct: 27 IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82
Query: 76 VDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120
S T K L+R +E V + +R TLCVSS
Sbjct: 83 TTAAESKDHTTTKLLIRLK-----NGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TGT NL++ EI+ Q++ A +I
Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRY-------------------SQIR 178
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
N+V MGMGEPL N+ + +++ + S S +RIT+ST G + +I + + + L
Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLIGSP-FQLSPKRITVSTVGIIHSINKFNNDLPNINL 237
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA D+R ++P R +PL L++A + Y S + I EY+ML G+ND + A
Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357
L K+L+ A +NLIPFNP + S + ++ F + ++ + IR G D
Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQD 356
Query: 358 ILAACGQL 365
I ACGQL
Sbjct: 357 IAGACGQL 364
>gi|261324195|ref|ZP_05963392.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae
5K33]
gi|261300175|gb|EEY03672.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae
5K33]
Length = 307
Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats.
Identities = 136/208 (65%), Positives = 168/208 (80%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L
Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFS 213
GMGEPL NF+ VKK+L IASD GLSF
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSFP 234
>gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group]
gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa
Japonica Group]
gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group]
Length = 388
Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 108/368 (29%), Positives = 164/368 (44%), Gaps = 49/368 (13%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
+ GI + + IWK++ D + + LL Q F +
Sbjct: 27 IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82
Query: 76 VDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120
S T K L+R +E V + +R TLCVSS
Sbjct: 83 TTAAESKDRTTTKLLIRLK-----NGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TGT NL++ EI+ Q++ A +I
Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRY-------------------SQIR 178
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
N+V MGMGEPL N+ + +++ + S S +RIT+ST G + +I + + + L
Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLIGSP-FQLSPKRITVSTVGIIHSINKFNNDLPNINL 237
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA D+R ++P R +PL L++A + Y S + I EY+ML G+ND + A
Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357
L K+L+ A +NLIPFNP + S + ++ F + ++ + IR G D
Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQD 356
Query: 358 ILAACGQL 365
I ACGQL
Sbjct: 357 IAGACGQL 364
>gi|84997417|ref|XP_953430.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304426|emb|CAI76805.1| hypothetical protein, conserved [Theileria annulata]
Length = 399
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 116/384 (30%), Positives = 169/384 (44%), Gaps = 58/384 (15%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+ + L +PQ R SQI+ IY +F M + + +R L+ +F +
Sbjct: 10 IAKYLKDNSVPQ----YRLSQIFNSIYRNKTPNFLSMYHLPKILRSGLHDNFEGSLLSLN 65
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
S K +L IE V + + +LC+S+QVGCS CSFC TG
Sbjct: 66 PVSESNSDRAKKVLF----QNSDGSRIEAVLLHFNTHKSLCISAQVGCSYACSFCATGKI 121
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
L RNLT +EI QVL + L G KI +I MGMGEPL N N
Sbjct: 122 GLKRNLTVDEITDQVLYFQQL------------------GHKIDSISFMGMGEPLSNP-N 162
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNILV 255
V KS++I +D + S RRI +ST G +P I ++ +E LA SLH+ + RN +V
Sbjct: 163 VFKSINILTDKRYFALSPRRINVSTVGILPGIKKLNKEYPYVNLAYSLHSPFTEERNEMV 222
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP----- 310
P+N YP + + RRI Y+++K ND+ LI I+KG P
Sbjct: 223 PVNLLYPFQEAYPLMDERIRQT-GRRIWISYILIKDKNDTKEHVEELINIIKGRPKEVQY 281
Query: 311 -AKINLIPFN--------------------PWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
+NLIP+N +Y ++ + F + ++++G S
Sbjct: 282 LYHVNLIPYNIGMPQILVLTHQTTFLCLVKSID--KYESTEHDQSLKFEKYLRKNGISCS 339
Query: 350 IRTPRGLDILAACGQL-KSLSKRI 372
R G +I AACGQL +
Sbjct: 340 YRNYFGRNIDAACGQLFAGKYIKK 363
>gi|226498566|ref|NP_001144705.1| hypothetical protein LOC100277741 [Zea mays]
gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays]
Length = 381
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 105/344 (30%), Positives = 156/344 (45%), Gaps = 39/344 (11%)
Query: 38 IWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96
IWK++ D G+ + LL Q F + + R
Sbjct: 37 IWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTSTL--TAAADSKDRTTTKLLICLQ 94
Query: 97 IGGPVEIETVYIPEKS------------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
G VE + + R TLCVSSQVGC + C FC TGT NL++
Sbjct: 95 NGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSS 154
Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
EI+ Q++ A +I N+V MGMGEP+ N++ + +++ +
Sbjct: 155 GEIVEQLVHASRY-------------------SQIRNVVFMGMGEPMNNYNALVEAIGVF 195
Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263
+ S S +RIT+ST G + I + + V LA+SLHA D+R ++P R +PL
Sbjct: 196 TGSP-FQLSPKRITVSTVGIIHGINKFNGDLPKVNLAVSLHAPDQDIRCQIMPAARAFPL 254
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP- 322
L++A + Y S + I EY+ML G+ND A L K+L+ A +NLIPFNP
Sbjct: 255 GKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPIGS 313
Query: 323 GCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQL 365
+ S +++ F + +K + IR G DI ACGQL
Sbjct: 314 SSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDIAGACGQL 357
>gi|46445973|ref|YP_007338.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila
UWE25]
gi|81627607|sp|Q6MED6|RLMN1_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
AltName: Full=23S rRNA m2A2503 methyltransferase 1
gi|46399614|emb|CAF23063.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 358
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 120/379 (31%), Positives = 194/379 (51%), Gaps = 46/379 (12%)
Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS------QE 59
S++ E A+ ++G +H +++ + RG +IS +
Sbjct: 6 ISILSHTSESYANAISHELGKGFQH----AKLVYQEWFRRG--------NISGLNPAFKN 53
Query: 60 VRHLLNQHFSIIYPE--IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
+ LL S+ + + ++ T K+L++ ++I++V IP ++ GTLC
Sbjct: 54 AQALLQNILSLTDFSFLPISQNLTDGQTGKFLIKTI-----DDLDIKSVLIPMQAGGTLC 108
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ+GC + C+FC TG L+RNLT +EIL Q+ +A+ L
Sbjct: 109 ISSQIGCQMGCAFCETGRMGLLRNLTTQEILSQLFIAKFRL-----------------HF 151
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+ NIV MGMGEP N+D V + I +DS G RIT+STSG + I R+ +E
Sbjct: 152 SVRNIVFMGMGEPFDNYDTVMHAFRILTDSHGFGLGNNRITISTSGCLEGIYRLLQETTP 211
Query: 238 --MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
LA+SL+A +++LRN L+PIN+KYPL+ L A + ++ + + YV++K NDS
Sbjct: 212 LPNLAVSLNAPNDELRNKLMPINKKYPLKELYQAIYDFCKQTSKQ-VLIAYVLIKEQNDS 270
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
A L L G+ KINLIP+NP + +Q + F+ ++ G+ + +R +G
Sbjct: 271 IEHAKQLTNFLSGLNVKINLIPYNPQSRDRFQSPEQSTLENFTSYLREKGFYTLLRQTKG 330
Query: 356 LDILAACGQLKSLSKRIPK 374
I+AACGQL +L + K
Sbjct: 331 QKIMAACGQLGNLELKRKK 349
>gi|297834876|ref|XP_002885320.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
lyrata]
gi|297331160|gb|EFH61579.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
lyrata]
Length = 382
Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats.
Identities = 110/392 (28%), Positives = 175/392 (44%), Gaps = 42/392 (10%)
Query: 4 LKKESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+K +S+ E++ GI P + IWK++ + + +
Sbjct: 1 MKLKSVFDAS--EIKSEFESAGINPNFAIP-----IWKYVIQNPDCVWDEIPSLPSAAYS 53
Query: 63 LLNQHF-SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG------- 114
LL+ F ++ S T K L++ +E V + +R
Sbjct: 54 LLHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKP 108
Query: 115 -------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
TLC+SSQVGC + C+FC TGT NLT+ EI+ Q++ A + +
Sbjct: 109 RPGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIADIRNIVFML 168
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
GMGEPL N++ V +++ + S +RIT+ST G V
Sbjct: 169 LPWFDDCD---------QGMGEPLNNYNAVVEAVRVML-KQPFQLSPKRITISTVGIVHA 218
Query: 228 IARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
I ++ + GV LA+SLHA ++R ++P R +PL+ L+DA + + S ++I EY
Sbjct: 219 INKLDNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEY 277
Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-S 344
+ML G+ND + A L ++LK INLIPFNP ++ S + + +F + ++
Sbjct: 278 IMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQSVSSFQKILRETY 337
Query: 345 GYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
+ IR G DI ACGQL I K P
Sbjct: 338 KIRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369
>gi|32474560|ref|NP_867554.1| Fe-S-cluster redox enzyme [Rhodopirellula baltica SH 1]
gi|81660696|sp|Q7UPG1|Y6963_RHOBA RecName: Full=Probable RNA methyltransferase RB6963
gi|32445099|emb|CAD75101.1| conserved hypothetical protein-putative Fe-S-cluster redox enzyme
[Rhodopirellula baltica SH 1]
Length = 379
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 25/327 (7%)
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + ++ S + G + + R TLCVSSQ+GC
Sbjct: 54 AEAIELHSLKLYQRMDSEIDGAT---KLLFETESGMLIESVILRIATGRTTLCVSSQIGC 110
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG + +NL EEIL QV+ A +L R++SNIV
Sbjct: 111 AAACDFCATGKMGIAKNLATEEILDQVVQAGQILR--------------GEDRRLSNIVF 156
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAISL 243
MGMGEPL N NV +++ + + + S + +ST G + R+ + LA+SL
Sbjct: 157 MGMGEPLHNEVNVTEAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLALSL 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R ++P+ +K L L DA + + + EY+ML+ +NDS +DA LI
Sbjct: 217 HSADQTTREKIIPLGKKASLAQLHDAIHEIQTIQDREFM-IEYLMLRDVNDSAKDADRLI 275
Query: 304 KILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ + +NLIP+N + S + I +F++ +K SG + +R G DI AAC
Sbjct: 276 DWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTVRYSLGNDIEAAC 335
Query: 363 GQL-----KSLSKRIPKVPRQEMQITG 384
GQL + + + + + G
Sbjct: 336 GQLIRQENRQRAMQARRTESESDSHVG 362
>gi|224367133|ref|YP_002601296.1| hypothetical protein HRM2_00090 [Desulfobacterium autotrophicum
HRM2]
gi|223689849|gb|ACN13132.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 342
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 119/371 (32%), Positives = 184/371 (49%), Gaps = 39/371 (10%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL---- 63
+L+ M +E+ + L G + + + + RG +F S + R
Sbjct: 2 NLLEMTFKEVSQLLY-NGFGRGD--YHAGALLREVIKRGNHNF---STAPEFERSQGMSL 55
Query: 64 -LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L + + +VD+ + T K++ R IE+V IP K TLCVS+Q
Sbjct: 56 ALVSDYELPDFTVVDQMEEDN-TVKFVTRLH-----DGCSIESVIIPMKQYNTLCVSTQA 109
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C FC T RNL EI Q+ AR+ L G+KISNI
Sbjct: 110 GCRMGCRFCETARSGFKRNLQVHEITGQLFSARNTL-----------------GKKISNI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG--EEIGVMLA 240
V MGMGEP NFDN+ +S+ + +D G + R +T+ST G VP I + + LA
Sbjct: 153 VFMGMGEPFDNFDNLVRSIRVFNDQKGFDVAFRHMTVSTCGLVPGIRALAGLGLTQLSLA 212
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+S+H+ +++R++L+P+NR+YPL +L A YP L R I EYV++KG+NDS A
Sbjct: 213 VSVHSAIDEVRSVLMPVNRRYPLNVLRAALADYP-LHKRRYILVEYVLIKGVNDSQEAAA 271
Query: 301 NLIKILKGIPAKINLIPFNPW--PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L++ L + ++NLI +NP P E+ D + F+ ++ SG R +G +
Sbjct: 272 ALVQYLVPLKVRVNLIAYNPGRDPDPEFQGVDDCSMNQFASWLEDSGLFVIKRWSKGQKL 331
Query: 359 LAACGQLKSLS 369
+A CGQL + +
Sbjct: 332 MAGCGQLSTRT 342
>gi|254976991|ref|ZP_05273463.1| hypothetical protein CdifQC_16843 [Clostridium difficile QCD-66c26]
gi|255651909|ref|ZP_05398811.1| hypothetical protein CdifQCD_17123 [Clostridium difficile
QCD-37x79]
gi|260687131|ref|YP_003218265.1| hypothetical protein CDR20291_1774 [Clostridium difficile R20291]
gi|293402444|ref|ZP_06646580.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|296450747|ref|ZP_06892500.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
gi|306521660|ref|ZP_07408007.1| hypothetical protein CdifQ_19485 [Clostridium difficile QCD-32g58]
gi|323485992|ref|ZP_08091323.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163]
gi|323692843|ref|ZP_08107070.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673]
gi|332652412|ref|ZP_08418157.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
gi|164512331|emb|CAO78566.2| hypothetical protein [Clostridium difficile]
gi|260213148|emb|CBE04584.1| putative uncharacterized protein [Clostridium difficile R20291]
gi|291304107|gb|EFE45360.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291541455|emb|CBL14565.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus bromii L2-63]
gi|296260591|gb|EFH07433.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
gi|323400559|gb|EGA92926.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163]
gi|323503157|gb|EGB18992.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673]
gi|332517558|gb|EGJ47161.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
Length = 327
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 109/367 (29%), Positives = 168/367 (45%), Gaps = 57/367 (15%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
G +E+ E + + +++ +Y + + R
Sbjct: 17 YGFTYKEMSEVIGENE---------AKALYEELYKQ----------LP---RKK------ 48
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+V T K++ IETV+I + GT+CVS+QVGC + C
Sbjct: 49 -NLSMLVKNICKSSDTEKYVYELKDNKY-----IETVFIKRRDGGTVCVSTQVGCPVGCI 102
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC +G VRNLT+ EI+ Q++L R RK++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTSSEIVQQIILLR---------------------RKVNRIVFMGMGE 141
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL N+DN+ K++ I D GL+F IT+ST G V + ++ EE + L ISLHA +
Sbjct: 142 PLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEHLKIQLTISLHAATQ 201
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
RN ++P R Y +E ++ Y N +I F Y++L GIND P D L K +G
Sbjct: 202 SARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYLLLPGINDRPSDVRQLAKWFRG 260
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
IN++ +NP +++IV F ++++G +R G +I AACGQL +
Sbjct: 261 KKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSHGREINAACGQLANT 320
Query: 369 SKRIPKV 375
+ K
Sbjct: 321 YNKFKKK 327
>gi|266622739|ref|ZP_06115674.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
gi|288865503|gb|EFC97801.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
gi|291557353|emb|CBL34470.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a]
gi|295092179|emb|CBK78286.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf.
saccharolyticum K10]
Length = 328
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 109/366 (29%), Positives = 168/366 (45%), Gaps = 57/366 (15%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
G +E+ E + + +++ +Y + + R
Sbjct: 17 YGFTYKEMSEVIGENE---------AKALYEELYKQ----------LP---RKK------ 48
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+V T K++ IETV+I + GT+CVS+QVGC + C
Sbjct: 49 -NLSMLVKNICKSSDTEKYVYELKDNKY-----IETVFIKRRDGGTVCVSTQVGCPVGCI 102
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC +G VRNLT+ EI+ Q++L R RK++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTSSEIVQQIILLR---------------------RKVNRIVFMGMGE 141
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL N+DN+ K++ I D GL+F IT+ST G V + ++ EE + L ISLHA +
Sbjct: 142 PLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEHLKIQLTISLHAATQ 201
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
RN ++P R Y +E ++ Y N +I F Y++L GIND P D L K +G
Sbjct: 202 SARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYLLLPGINDRPSDVRQLAKWFRG 260
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
IN++ +NP +++IV F ++++G +R G +I AACGQL +
Sbjct: 261 KKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSHGREINAACGQLANT 320
Query: 369 SKRIPK 374
+ K
Sbjct: 321 YNKFKK 326
>gi|302807670|ref|XP_002985529.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
gi|300146735|gb|EFJ13403.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
Length = 374
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 117/369 (31%), Positives = 169/369 (45%), Gaps = 38/369 (10%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
L+ L + GI HV IW+ + + + + LL F + +
Sbjct: 12 LKAELQRHGIKPLHV-YT---IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKALTSTLA 67
Query: 77 DEKISCD-GTRKWLLRFPARC---------IGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
S + T K LL+ + GG + P R TLCVSSQVGC +
Sbjct: 68 AHSTSANGSTTKLLLQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQVGCKM 127
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TGT V NLTA EI+ Q + A + I NIV MG
Sbjct: 128 GCSFCATGTMGFVANLTAGEIVEQYVHASRM-------------------SPIRNIVFMG 168
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
MGEPL N+++V +++ + S RIT+ST G VP I + + GV LA+SLHA
Sbjct: 169 MGEPLNNYNSVVQAVQTLT-GRCFGLSPSRITISTVGIVPRILSLAGDLPGVNLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR +VP +R + L+ L+ A Y SN + EYVML+ +NDS +DA L +
Sbjct: 228 PTQALRCQIVPASRAFTLDKLMAAVDAYQASSNRT-LFIEYVMLQDVNDSSQDARQLGCL 286
Query: 306 LKGIPAKINLIPFN-PWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLDILAACG 363
L+ +NLIP+N + +Y + + F + + + G + +R G DI ACG
Sbjct: 287 LRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDIDGACG 346
Query: 364 QLKSLSKRI 372
QL +
Sbjct: 347 QLALKKLKA 355
>gi|266624063|ref|ZP_06116998.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
gi|288864119|gb|EFC96417.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
Length = 235
Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 86/238 (36%), Positives = 137/238 (57%), Gaps = 19/238 (7%)
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC + L RNL E+L Q+ + L G ++SN+V+MG GE
Sbjct: 1 FCASTLDGLERNLRPAEMLDQIYRIQYL-----------------TGERVSNVVIMGSGE 43
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
P+ N+D+V K + + +D GL+ S+R +TLST G VP I ++ +E + LA+SLHA ++
Sbjct: 44 PMDNYDHVVKFIRLLTDEHGLNVSQRNVTLSTCGIVPGILKLADEGLAITLALSLHAPND 103
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
++R L+P+ + Y L +++AC Y + RR+TFEY ++ G+ND+ +A L ++K
Sbjct: 104 EVRKTLMPVAKSYKLNDVLEACHTYFEKT-GRRLTFEYSLVAGVNDNLEEAAALAALIKD 162
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+NLIP NP +Y+ SD+K I F ++++G + IR G DI ACGQL+
Sbjct: 163 QQGHVNLIPVNPIKERDYVQSDRKAIEAFKNLLEKNGINVTIRREMGRDIHGACGQLR 220
>gi|87311004|ref|ZP_01093129.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
3645]
gi|87286294|gb|EAQ78203.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
3645]
Length = 361
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 96/278 (34%), Positives = 134/278 (48%), Gaps = 18/278 (6%)
Query: 98 GGPVEIETVYIPEKSRGTL-CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
+ +E+V + + T CVSSQVGC+ C FC TG + R+L+A +IL QV+ A
Sbjct: 91 DDGLLLESVILRVATGRTALCVSSQVGCAANCDFCATGKMGIARSLSAPQILDQVVQANQ 150
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
LL GRK+ NIV MGMGEP N V ++L G S RR
Sbjct: 151 LL--------------KPEGRKVRNIVFMGMGEPFHNTAAVHETLEKLVSPHGFDQSPRR 196
Query: 217 ITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+ST G + + V LA+SLH+ R ++P+ K+ L+ L A
Sbjct: 197 TLVSTVGLPSAMIAFARKFPKVNLALSLHSAIQSRRTEIIPLAAKFDLKELRAALDQVAA 256
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDI 334
+ I EY+ML+GIND P D L L+G+P INLIP+N + + ++D
Sbjct: 257 VQQQS-IMIEYLMLRGINDGPEDRAALADYLRGLPVHINLIPYNRVDAAPHLEGTSKEDR 315
Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
F ++ GY+ IR G D+ AACGQL R
Sbjct: 316 EAFGAALRGEGYTVTIRYSLGADVDAACGQLVRRENRR 353
>gi|255074899|ref|XP_002501124.1| predicted protein [Micromonas sp. RCC299]
gi|226516387|gb|ACO62382.1| predicted protein [Micromonas sp. RCC299]
Length = 368
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 110/388 (28%), Positives = 173/388 (44%), Gaps = 57/388 (14%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
+ +E+E GI + +R+ ++ ++ RG F+ D+S LL +F++
Sbjct: 4 LDIDEVERFARDRGIKKSSLRL----CYRELFRRGKSTFENAPDVSARDMKLLRDNFTVC 59
Query: 72 YPEIVDEKIS-CDGTRKWLLRFPAR-----------------------CIGGPVEIETVY 107
E+V+ K + K ++R G ++
Sbjct: 60 TSEVVETKTTEDGSGAKMVVRLHDGKLVETVVIGHSRSVDDGDGDETRGDGEDADVSDGA 119
Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
R T+CVSSQVGC++ C+FC TGT L+ NLTA EI QV AR+L G
Sbjct: 120 KNRVFRNTVCVSSQVGCAMGCTFCETGTLGLMANLTAGEICEQVWHARNLCGSTG----- 174
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
+ N+VMMGMGEPL N++ V +L + +R +T+ST G +
Sbjct: 175 -----------VRNVVMMGMGEPLDNYEEVLIALRAMTHQAVFDMRQRSVTVSTVGVPAS 223
Query: 228 IARVGEE-IGVMLAISLHAVSNDLRNILVPIN--RKYPLEMLIDACRHYPGLSNARRITF 284
I R+ ++ V LA+SLHA + DLR L+P + L L ++ R Y + R
Sbjct: 224 IRRLADDAPNVGLALSLHAPTQDLRATLLPSAAGTSHTLGRLTESLR-YHRQKSGRGAMI 282
Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVTFSECI 341
EY+++ G+NDSP A L ++ +NLIP+NP Y + + +
Sbjct: 283 EYIVIDGVNDSPTHARELGELSGYF---VNLIPYNPTDVGGTHGYRSPADDALERMASIL 339
Query: 342 -KRSGYSSPIRTP--RGLDILAACGQLK 366
G + +R RG ++ ACGQL
Sbjct: 340 GDEFGVKAKVRWSTRRGREVDGACGQLA 367
>gi|258597636|ref|XP_001348239.2| radical SAM protein, putative [Plasmodium falciparum 3D7]
gi|255528761|gb|AAN36678.2| radical SAM protein, putative [Plasmodium falciparum 3D7]
Length = 362
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 113/377 (29%), Positives = 167/377 (44%), Gaps = 41/377 (10%)
Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS--IIYPEIVDE 78
L+K+ ++ + R QI IY I + M +I E+R L F I+ + + E
Sbjct: 10 LIKMMERKKFEKYRLKQIMDNIYKGKIIEINKMKNIPTEIRRELKNIFHNNILSIKPIKE 69
Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
K L + +IE + S +LC+SSQ+GCS C FC TG +
Sbjct: 70 LKYDR-AYKVLFQCK-----DNEKIEATSLDFGSHKSLCISSQIGCSFGCKFCATGQIGI 123
Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
R L +EI Q+L + S G I NI MGMGEPL N V
Sbjct: 124 KRQLDIDEITDQLLYFQ------------------SKGVDIKNISFMGMGEPLANP-YVF 164
Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257
S+ +D+ S S RRI +ST G +P I ++ V LA SLH+ + R+ LVPI
Sbjct: 165 DSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPFTEERDQLVPI 224
Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------A 311
N+ +P + D + RR+ Y+++K +NDS A L + P
Sbjct: 225 NKLFPFNEVFDLLDERIAKT-GRRVWISYILIKNLNDSKDHAEALSDHICKRPNNIRYLY 283
Query: 312 KINLIPFNP---WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ LIP+N + D + I+ F + +K++G S R G I AACGQL +
Sbjct: 284 NVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKNGISFFYRNSFGYSIDAACGQLYAD 343
Query: 369 S---KRIPKVPRQEMQI 382
KR K+ + M +
Sbjct: 344 YEPKKRKEKIESKNMSL 360
>gi|302810701|ref|XP_002987041.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
gi|300145206|gb|EFJ11884.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
Length = 374
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 118/366 (32%), Positives = 168/366 (45%), Gaps = 38/366 (10%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
L+ L + GI HV IW+ + + + + LL F + +
Sbjct: 12 LKAELQRHGIKPLHV-YT---IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKALTSTLA 67
Query: 77 DEKISCD-GTRKWLLRFPARC---------IGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
S + T K LL+ + GG + P R TLCVSSQVGC +
Sbjct: 68 AHSTSANGTTTKLLLQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQVGCKM 127
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
CSFC TGT V NLTA EI+ Q + A + I NIV MG
Sbjct: 128 GCSFCATGTMGFVANLTAGEIVEQYVHASRM-------------------SPIRNIVFMG 168
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
MGEPL N+++V +++ + S RIT+ST G VP I V + GV LA+SLHA
Sbjct: 169 MGEPLNNYNSVVQAVQTLT-GRCFGLSPSRITISTVGIVPRILSVAGDLPGVNLALSLHA 227
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ LR +VP +R + L+ L+ A Y SN + EYVML+ +NDS +DA L +
Sbjct: 228 PTQALRCQIVPASRAFTLDKLMAAVDAYQASSNRT-LFIEYVMLQDVNDSSQDARQLGCL 286
Query: 306 LKGIPAKINLIPFN-PWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLDILAACG 363
L+ +NLIP+N + +Y + + F + + + G + +R G DI ACG
Sbjct: 287 LRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDIDGACG 346
Query: 364 QLKSLS 369
QL
Sbjct: 347 QLALKK 352
>gi|301059158|ref|ZP_07200099.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
gi|300446738|gb|EFK10562.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
Length = 345
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 112/364 (30%), Positives = 177/364 (48%), Gaps = 33/364 (9%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF---QGMSDISQEVRHLLN 65
L+ + E L A+ +++ Y D + + + SQ +R L
Sbjct: 4 LLELTYENLLAAVSD---RYGKGSFLAQTLYREFYKDLKPDAWRAEAIRN-SQGLRDRLR 59
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
Q + P V ++I DG K++ +E+V +P ++ T+C+SSQVGC
Sbjct: 60 QDWCFE-PGRVKDEIHEDGLIKFVTELV-----DGHRVESVILPLRTHQTVCISSQVGCR 113
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L R+L+ EE++ QV AR GR I N+V M
Sbjct: 114 MGCRFCETGKLGLARSLSVEEMVGQVYQARH-----------------EFGRSIRNVVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG--EEIGVMLAISL 243
GMGEP NF+NV +++ + SD GL ++RRITLST+G + I ++ + L +SL
Sbjct: 157 GMGEPFDNFENVIQAVRVMSDQRGLDIAQRRITLSTAGRIDGIRKLAALNMPSLNLTVSL 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+A ++ LR L+P++ K L +L YP L + + YV++ +ND L
Sbjct: 217 NAPNDQLRQRLMPLHDKGSLALLQKTLMAYP-LKKGKVLNVAYVLISHVNDQGEHVQQLA 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ LK + A++NLIP+N + Q D F E + G + R PRG +++AACG
Sbjct: 276 EWLKPLRARVNLIPYNSIKDSLFQPPRQGDTDLFREKLIELGVNVQKRIPRGRELMAACG 335
Query: 364 QLKS 367
QL +
Sbjct: 336 QLGA 339
>gi|219558900|ref|ZP_03537976.1| hypothetical protein MtubT1_16977 [Mycobacterium tuberculosis T17]
Length = 238
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 90/248 (36%), Positives = 133/248 (53%), Gaps = 20/248 (8%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L RNL+ EIL QV + L D G ++SN+V M
Sbjct: 2 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 48
Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
GMGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+S
Sbjct: 49 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 108
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LHA + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 109 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVT-GRRVSIEYALIRDVNDQPWRADLL 167
Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K L + A +NLIP NP PG ++ S + F + ++ G S +R RG +I
Sbjct: 168 GKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREIS 227
Query: 360 AACGQLKS 367
AACGQL +
Sbjct: 228 AACGQLAA 235
>gi|145352684|ref|XP_001420668.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580903|gb|ABO98961.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 254
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 106/244 (43%), Positives = 151/244 (61%), Gaps = 20/244 (8%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FCYT L +NL+A +I+ QV+ AR ++G ++SN+V M
Sbjct: 1 MNCQFCYTAKMGLRKNLSAAQIVEQVVQARRMVGAS----------------EVSNVVFM 44
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N D V K++SI D GL FS+ ++T+STSG VP + R E LA+SL+A
Sbjct: 45 GMGEPLHNVDEVLKAVSILLDPKGLGFSRNKVTVSTSGLVPQMERFLRESEASLAVSLNA 104
Query: 246 VSNDLRNILVPINRKYPLEMLIDACR-HYPGLS---NARRITFEYVMLKGINDSPRDALN 301
++ +RN ++PINRKY LEML+ R +P S + R++ FEY+ML+G+NDS DA
Sbjct: 105 TTDYIRNWIMPINRKYNLEMLLGLLRREFPRQSLGRHQRQVFFEYIMLEGVNDSDEDADR 164
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L++I + IP KINLI FN G E+ CSDQ+ I F + + +G + IR RG + ++A
Sbjct: 165 LVEIARDIPCKINLIYFNTHDGSEFKCSDQERINAFRQRVSDAGVTCTIRQSRGDEEMSA 224
Query: 362 CGQL 365
CGQL
Sbjct: 225 CGQL 228
>gi|212694595|ref|ZP_03302723.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855]
gi|212663096|gb|EEB23670.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855]
Length = 273
Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats.
Identities = 98/291 (33%), Positives = 148/291 (50%), Gaps = 29/291 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L
Sbjct: 5 KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETLK 60
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC
Sbjct: 61 EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NL+A +IL Q+ K++N+V M
Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVFM 156
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H
Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
R L+P + + + +ID +Y S RR++FEY++ KG+N+
Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNERD 266
>gi|225388237|ref|ZP_03757961.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme
DSM 15981]
gi|225045705|gb|EEG55951.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme
DSM 15981]
Length = 304
Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats.
Identities = 105/321 (32%), Positives = 157/321 (48%), Gaps = 30/321 (9%)
Query: 58 QEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115
+ + L + +V T K++ IETV+I + GT
Sbjct: 11 KALYEELYKQLPRKKNLSMLVKNICKSSDTEKYVYELKDNKY-----IETVFIKRRDGGT 65
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+CVS+QVGC + C FC +G VRNLT+ EI+ Q++L R
Sbjct: 66 VCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR-------------------- 105
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
RK++ IV MGMGEPL N+DN+ K++ I D GL+F IT+ST G V + ++ EE
Sbjct: 106 -RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEH 164
Query: 236 -GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ L ISLHA + RN ++P R Y +E ++ Y N +I F Y++L GIND
Sbjct: 165 LKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYLLLPGIND 223
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
P D L K +G IN++ +NP +++IV F ++++G +R
Sbjct: 224 RPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSH 283
Query: 355 GLDILAACGQLKSLSKRIPKV 375
G +I AACGQL + + K
Sbjct: 284 GREINAACGQLANTYNKFKKK 304
>gi|294461088|gb|ADE76111.1| unknown [Picea sitchensis]
Length = 384
Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats.
Identities = 98/323 (30%), Positives = 150/323 (46%), Gaps = 34/323 (10%)
Query: 56 ISQEVRHLLNQHFSIIYPEI-VDEKISCDGTRKWLLRFPARCIGGPVEIE-----TVYI- 108
+S +L F + + K + T K L++ V + Y
Sbjct: 50 LSNAAYDVLRSKFIAMTSTVKATVKSADQSTTKLLIQLQNGSFIETVIMSYDTRLGTYAG 109
Query: 109 ---PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
P R TLCVSSQVGC + C+FC TG+ NL+ EI+ Q++ A +
Sbjct: 110 SPRPGGPRATLCVSSQVGCKMGCTFCATGSMGFKSNLSVGEIVEQLVHAARI-------- 161
Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
+I N+V MGMGEPL N+ +V +++ + + R IT+S G +
Sbjct: 162 -----------SQIRNVVFMGMGEPLNNYKSVVEAVR-SMIGHCFQLAPRHITISAVGVI 209
Query: 226 PNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
I + + V LA+SLHA ++R ++P R +PL L+DA Y S +I
Sbjct: 210 HCINNLKYDLPNVNLAVSLHAPLQEIRCQIMPAARAFPLGKLMDALHAYQEHSKR-KIFI 268
Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR 343
EY+ML GIND + A L K+L+ +NLI FNP +Y S ++++ F + ++
Sbjct: 269 EYIMLDGINDQEQQAHLLGKLLEEYEVVVNLISFNPIGSISKYRTSKKENVELFQKILRG 328
Query: 344 -SGYSSPIRTPRGLDILAACGQL 365
+ +R G DI ACGQL
Sbjct: 329 VYNIRTTVRQEMGQDISGACGQL 351
>gi|327543394|gb|EGF29819.1| radical SAM domain protein [Rhodopirellula baltica WH47]
Length = 379
Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats.
Identities = 92/319 (28%), Positives = 146/319 (45%), Gaps = 20/319 (6%)
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + ++ S + G + + R TLCVSSQ+GC
Sbjct: 54 AEAIELHSLKLYQRMDSEIDGAT---KLLFETESGMLIESVILRIATGRTTLCVSSQIGC 110
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG + +NL EEIL QV+ A +L R++SNIV
Sbjct: 111 AAACDFCATGKMGIAKNLATEEILDQVVQAGQILR--------------GEDRRLSNIVF 156
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAISL 243
MGMGEPL N NV +++ + + S + S + +ST G + R+ + LA+SL
Sbjct: 157 MGMGEPLHNEVNVTEAIELLTASDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLALSL 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H+ R ++P+ +K L L D + + + EY+ML+ +NDS +DA LI
Sbjct: 217 HSADQTTREKIIPLGKKASLTQLHDTILEIQTIQDREFM-IEYLMLRDVNDSAKDADRLI 275
Query: 304 KILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
+ + +NLIP+N + S + I +F++ +K SG + +R G DI AAC
Sbjct: 276 DWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTVRYSLGNDIEAAC 335
Query: 363 GQLKSLSKRIPKVPRQEMQ 381
GQL R + + +
Sbjct: 336 GQLIRQENRQRAMQARRTE 354
>gi|163816252|ref|ZP_02207619.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759]
gi|166032398|ref|ZP_02235227.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC
27755]
gi|167747584|ref|ZP_02419711.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662]
gi|167771778|ref|ZP_02443831.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM
17241]
gi|210615433|ref|ZP_03290560.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787]
gi|227498634|ref|ZP_03928778.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|283796286|ref|ZP_06345439.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
gi|331088114|ref|ZP_08337035.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA]
gi|158448447|gb|EDP25442.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759]
gi|166028121|gb|EDR46878.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC
27755]
gi|167652946|gb|EDR97075.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662]
gi|167666418|gb|EDS10548.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM
17241]
gi|210150282|gb|EEA81291.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787]
gi|226904090|gb|EEH90008.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|291076221|gb|EFE13585.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
gi|291543137|emb|CBL16247.1| radical SAM enzyme, Cfr family [Ruminococcus bromii L2-63]
gi|330409070|gb|EGG88529.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA]
Length = 329
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 107/369 (28%), Positives = 168/369 (45%), Gaps = 57/369 (15%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
G +E+ E + + R ++ +Y + ++ S
Sbjct: 17 YGFTYKEMSEVI-------GEDKARA--LYTELYKQPFH----------------KENLS 51
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
I ++ T K++ IETV+I + GT+CVS+QVGCS+ C
Sbjct: 52 ISTKKVYK----SSDTEKYVYELKDNRY-----IETVFIKRRDGGTVCVSTQVGCSVGCI 102
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC +G VRNLT EI+ QV+L R K++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTPSEIVQQVVLIRQ---------------------KVNRIVFMGMGE 141
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL N+DN+ ++ I D GL+F IT+ST G V + ++ EE + L ISLHA +
Sbjct: 142 PLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHLKIQLTISLHAATQ 201
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
RN ++P Y +E ++ Y N ++ F Y++L GIND D L K KG
Sbjct: 202 AARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSSDIRQLAKWFKG 260
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
IN++ +NP + ++++V F ++++G +R G +I AACGQL +
Sbjct: 261 KNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGREIKAACGQLANT 320
Query: 369 SKRIPKVPR 377
+ K +
Sbjct: 321 YNKAKKQQK 329
>gi|91977329|ref|YP_569988.1| hypothetical protein RPD_2859 [Rhodopseudomonas palustris BisB5]
gi|123721790|sp|Q136A2|Y2859_RHOPS RecName: Full=Probable RNA methyltransferase RPD_2859
gi|91683785|gb|ABE40087.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 359
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 94/269 (34%), Positives = 141/269 (52%), Gaps = 23/269 (8%)
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+E+V I T C+SSQVGC+ C FC +G L+RNL A EI+ QV+
Sbjct: 93 HDGYAVESVLIRRFDGHTACISSQVGCAFACRFCASGQAGLMRNLEAGEIVEQVVRL--- 149
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
G K++ IV MG+GEPL N+ V K++ I D G++F I
Sbjct: 150 ------------------GPKVNRIVFMGIGEPLNNYQQVLKAIRILRDRQGMNFPTTGI 191
Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
TLST G + ++ EE + L ISLHA + ++R+ L+P RK+PL +++ +
Sbjct: 192 TLSTIGIPKALKQLREEHLAINLTISLHATTQEVRDRLIPGARKHPLGEVVERACAWARR 251
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
N +TF Y++L GINDS DA L +L+ PA++NL+ +NP G + + +
Sbjct: 252 HNR-PVTFAYLVLPGINDSIADARRLAAMLRDSPARVNLMRWNPVDGVGLQRTPDRSLAH 310
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQL 365
F ++ + +R +G DI AACGQL
Sbjct: 311 FRTTLENALVPVVVRDTQGRDISAACGQL 339
>gi|330999065|ref|ZP_08322788.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329575586|gb|EGG57120.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 302
Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 106/319 (33%), Positives = 160/319 (50%), Gaps = 29/319 (9%)
Query: 61 RHLLNQHFSIIYPEIVDEKI-SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
R+ +N HF+ I +K+ T K++ IETV+I + GT+CVS
Sbjct: 11 RNYINSHFTKKNLSISTKKVYKSSDTEKYVYELKDNRY-----IETVFIKRRDGGTVCVS 65
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+QVGC + C FC +G VRNLT EI+ QV+L R K+
Sbjct: 66 TQVGCPVGCIFCESGRNGFVRNLTPSEIVQQVILIRQ---------------------KV 104
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
+ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + ++ EE +
Sbjct: 105 NRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVKQLKKLREEHLKIQ 164
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
L ISLHA + RN ++P KY +E ++ Y N ++ F Y++L GIND D
Sbjct: 165 LTISLHAATQAARNCIIPHMHKYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSSD 223
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L K KG IN++ +NP + ++++V F ++++G +R G +I
Sbjct: 224 IRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGREI 283
Query: 359 LAACGQLKSLSKRIPKVPR 377
AACGQL + + K +
Sbjct: 284 KAACGQLANTYNKAKKQQK 302
>gi|160938516|ref|ZP_02085871.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC
BAA-613]
gi|167760863|ref|ZP_02432990.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704]
gi|225375530|ref|ZP_03752751.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM
16841]
gi|239623023|ref|ZP_04666054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|240147536|ref|ZP_04746137.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
gi|158438889|gb|EDP16646.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC
BAA-613]
gi|167661466|gb|EDS05596.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704]
gi|225212619|gb|EEG94973.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM
16841]
gi|239522602|gb|EEQ62468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
gi|257200248|gb|EEU98532.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
Length = 329
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 111/385 (28%), Positives = 173/385 (44%), Gaps = 64/385 (16%)
Query: 1 MNFLKKESL-------IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM 53
M L K +L G +E+ E + + R ++ +Y +
Sbjct: 1 MKHLPKSTLTEILNDPYGFTYKEMSEVI-------GEDKARA--LYAELYKQPFH----- 46
Query: 54 SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
++ SI ++ T K++ IETV+I +
Sbjct: 47 -----------KKNLSISTKKVYK----SSDTEKYVYELKDNRY-----IETVFIKRRDG 86
Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
GT+CVS+QVGCS+ C FC +G VRNLT EI+ QV+L R
Sbjct: 87 GTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIRQ----------------- 129
Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + ++ E
Sbjct: 130 ----KVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLRE 185
Query: 234 EI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E + L ISLHA + RN ++P Y +E ++ Y N ++ F Y++L GI
Sbjct: 186 EHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGI 244
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
ND D L K KG IN++ +NP + ++++V F ++++G +R
Sbjct: 245 NDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRV 304
Query: 353 PRGLDILAACGQLKSLSKRIPKVPR 377
G +I AACGQL + + K +
Sbjct: 305 SHGREIKAACGQLANTYNKAKKQQK 329
>gi|317501363|ref|ZP_07959565.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
gi|325263263|ref|ZP_08129998.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
gi|328948778|ref|YP_004366115.1| radical SAM protein [Treponema succinifaciens DSM 2489]
gi|316897227|gb|EFV19296.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
gi|324031656|gb|EGB92936.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
gi|328449102|gb|AEB14818.1| radical SAM enzyme, Cfr family [Treponema succinifaciens DSM 2489]
Length = 329
Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 107/369 (28%), Positives = 168/369 (45%), Gaps = 57/369 (15%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
G +E+ E + + R ++ +Y + ++ S
Sbjct: 17 YGFTYKEMSEVI-------GEDKARA--LYTELYKQPFH----------------KKNLS 51
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
I ++ T K++ IETV+I + GT+CVS+QVGCS+ C
Sbjct: 52 ISTKKVYK----SSDTEKYVYELKDNRY-----IETVFIKRRDGGTVCVSTQVGCSVGCI 102
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC +G VRNLT EI+ QV+L R K++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTPSEIVQQVILIRQ---------------------KVNRIVFMGMGE 141
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL N+DN+ ++ I D GL+F IT+ST G V + ++ EE + L ISLHA +
Sbjct: 142 PLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHLKIQLTISLHAATQ 201
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
RN ++P Y +E ++ Y N ++ F Y++L GIND D L K KG
Sbjct: 202 AARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSSDIRQLAKWFKG 260
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
IN++ +NP + ++++V F ++++G +R G +I AACGQL +
Sbjct: 261 KNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGREIKAACGQLANT 320
Query: 369 SKRIPKVPR 377
+ K +
Sbjct: 321 YNKAKKQQK 329
>gi|294670879|ref|ZP_06735735.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307366|gb|EFE48609.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 219
Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 101/232 (43%), Positives = 144/232 (62%), Gaps = 16/232 (6%)
Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
R Q+ +W++ G DF M+D+++ +R L + + P ++ + S DGTRKW
Sbjct: 2 GEKPFRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLEECAIVGVPALMTAQESKDGTRKW 61
Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
LL G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLT EI+
Sbjct: 62 LLDV-----GTGNGVETVFIPEADRGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEII 116
Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
Q+ A LG P E R ISN+VMMGMGEPL N+DNV ++L++ D
Sbjct: 117 GQLWWANKALGATPKNE-----------RMISNVVMMGMGEPLANYDNVVRALAVMLDDH 165
Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
G S S+RR+T+STSG VP + R+ E++ V LA+SLHA ++++R+ +VP+N+
Sbjct: 166 GYSLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDEVRDQIVPLNKN 217
>gi|293400143|ref|ZP_06644289.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306543|gb|EFE47786.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 329
Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats.
Identities = 107/369 (28%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
G +E+ E IG + ++K + + ++S
Sbjct: 17 YGFTYKEMSEV---IGEDKARALY-AK-LYKQPFHKK--------NLSIST--------- 54
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+ T K++ IETV+I + GT+CVS+QVGCS+ C
Sbjct: 55 -------KKVYKSSDTEKYVYELKDNRY-----IETVFIKRRDGGTVCVSTQVGCSVGCI 102
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC +G VRNLT EI+ QV+L R K++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTPSEIVQQVILIRQ---------------------KVNRIVFMGMGE 141
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
PL N+DN+ ++ I D GL+F IT+ST G V + ++ EE + L ISLHA +
Sbjct: 142 PLFNYDNLIAAIHILRDRNGLNFPTDGITISTVGPVNQLKKLREEHLKIQLTISLHAATQ 201
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+RN ++P Y +E ++ Y N ++ F Y++L GIND D L K KG
Sbjct: 202 AVRNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSSDIRQLAKWFKG 260
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
IN++ +NP + ++++V F ++++G +R G +I AACGQL +
Sbjct: 261 KNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGREIKAACGQLANT 320
Query: 369 SKRIPKVPR 377
+ K +
Sbjct: 321 YNKAKKQQK 329
>gi|219129697|ref|XP_002185019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403514|gb|EEC43466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 387
Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats.
Identities = 107/343 (31%), Positives = 155/343 (45%), Gaps = 34/343 (9%)
Query: 54 SDISQEVRHLLNQH-----FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEI--ET 105
S + ++ L + F + I + S T K ++ + V + +
Sbjct: 60 SQLPRKFLDFLQEDAQSSGFVTVTSRIEFAQTSADRSTTKLAVQLHDGQLVESVLMRYVS 119
Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
SR +LCVSSQ GC++ C+FC TGT L NLTA EIL Q+ L + L
Sbjct: 120 TATSNNSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQIPLPKLDL------- 172
Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
+ N+V MGMGEPL N+ NV ++ D + + R+T+ST G V
Sbjct: 173 -------------VRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTVGLV 219
Query: 226 PNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRI 282
I ++ E V LA+SLHA + R +VP + YPLE LIDA + L
Sbjct: 220 SQIRKLTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKRTNP 279
Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECI 341
EYVML+G + A L K+ + +NLIP+N + C ++ + F E +
Sbjct: 280 MIEYVMLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFREIV 339
Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQITG 384
G IR G DI +ACGQL ++ R K + E G
Sbjct: 340 ASYGSFCTIRKTMGADIDSACGQL--ITLRENKQSQNEHNAKG 380
>gi|307103703|gb|EFN51961.1| hypothetical protein CHLNCDRAFT_27272 [Chlorella variabilis]
Length = 384
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 59/370 (15%)
Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
+ + A IG +H+ R ++ + + + D + R L+ F +
Sbjct: 14 DVDAVRLAFEAIGANPKHIP-R---LYNHMIRNPGGGWADLPDFPKAARAALDAGFVLHT 69
Query: 73 PEIVDEKIS-CDGTRKWLLRFPAR-----------CIGGPVEIETVYIPEKSRGTLCVSS 120
++ + S T K L++ GG V+ + R TLCVSS
Sbjct: 70 TRLLTVQRSSDGETTKLLVQLQDGLQVEAVVMQYDNTGGWVDGWVAAMEGGKRTTLCVSS 129
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
+VGC++ C+FC TGT L +LTA EI+ Q++ A S+ +I
Sbjct: 130 EVGCAMGCTFCATGTMGLSADLTAGEIVEQLVHASSV-------------------SRIQ 170
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239
NIV MGMGEPL N++ V+ ++ + +D + +R++T+ST G +P + ++ +++ V L
Sbjct: 171 NIVFMGMGEPLNNYEAVRTAVRLMTDPSSFALRRRKVTVSTVGVIPRMLQMADDMPGVSL 230
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK-GINDSPRD 298
A+SLHA + +LR + Y + +R+ EYVML IN +
Sbjct: 231 ALSLHAPTQELRQTI------------------YLERT-GQRVFVEYVMLGPDINCTQAH 271
Query: 299 ALNLIKILKGIPAKINLIPFNPW--PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRG 355
A L ++L+G +NLIP+NP P + ++ F ++ + G + IR +G
Sbjct: 272 AHQLGRLLQGRNVLVNLIPWNPILSPSITFAAPEEGATAAFHSILRYQYGVNCTIRAEKG 331
Query: 356 LDILAACGQL 365
DI ACGQL
Sbjct: 332 QDISGACGQL 341
>gi|315281048|ref|ZP_07869771.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
FSL S4-120]
gi|313615305|gb|EFR88727.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
FSL S4-120]
Length = 235
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)
Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
EI+ Q++ + L ++ ++S++V+MG+GEP N+DNV L +
Sbjct: 1 GEIVEQIMNVQHYLD------------GRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVI 48
Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263
+ GL+ R IT+STSG P I + V LAISLHA +N+LR ++ IN+ Y +
Sbjct: 49 NHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 108
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW 321
E L++A +Y +N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP
Sbjct: 109 EKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPV 167
Query: 322 PG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380
+Y S ++D++ F + +K++G + IR G DI AACGQL+S + V +
Sbjct: 168 DEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMK 227
Query: 381 Q 381
Q
Sbjct: 228 Q 228
>gi|205829719|sp|A1K1N5|Y122_AZOSB RecName: Full=Probable RNA methyltransferase azo0122
Length = 347
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 99/378 (26%), Positives = 168/378 (44%), Gaps = 48/378 (12%)
Query: 12 MMREELEEALLKIGI-PQRHVR-MRTSQIWKWIYV-------RGIRDFQGMSDISQEVRH 62
M ++L + L +G P R +R W+ + +DF + +R
Sbjct: 1 MRIDDLTQRLRALGAKPAHEQRVLRA-----WVQRSSMDNRRQAAKDF-----LPLALRE 50
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L E + S R G + + R LCVS+Q+
Sbjct: 51 ALP--ALTAELEGLARLRSQHPGEDGSARLLVELADGQTVESVLLL----RDGLCVSTQL 104
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG + L+R L + EI+ QV+LARSL R + +
Sbjct: 105 GCAVGCVFCMTGREGLLRQLGSAEIVAQVVLARSL-------------------RPVKKV 145
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
V MGMGEP N DNV +++ + + G+ + + ST G R+ + + LA+
Sbjct: 146 VFMGMGEPAHNLDNVLEAIDLLGTAGGIG--HKNLVFSTVGDYRVFERLPRQRVKPALAL 203
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH DLR L+P + + L++ Y S I +++ +++G+NDSP +
Sbjct: 204 SLHTTRADLRAQLLPRAPQIAPQELVELGERYAR-STGYPIQYQWTLIEGVNDSPEEMDG 262
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++++L+G A +NLIP+N P E+ ++ V + + R G + +R G D+
Sbjct: 263 IVRLLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGG 322
Query: 362 CGQLKSLSKRIPKVPRQE 379
CGQL++ ++ + PR
Sbjct: 323 CGQLRARVVKMDRRPRTA 340
>gi|219113956|ref|XP_002176161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402902|gb|EEC42868.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 471
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 107/343 (31%), Positives = 155/343 (45%), Gaps = 34/343 (9%)
Query: 54 SDISQEVRHLLNQH-----FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEI--ET 105
S + ++ L + F + I + S T K ++ + V + +
Sbjct: 60 SQLPRKFLDFLQEDAQSSGFVTVTSRIEFAQTSADRSTTKLAVQLHDGQLVESVLMRYVS 119
Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
SR +LCVSSQ GC++ C+FC TGT L NLTA EIL Q+ L + L
Sbjct: 120 TATSNNSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQIPLPKLDL------- 172
Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
+ N+V MGMGEPL N+ NV ++ D + + R+T+ST G V
Sbjct: 173 -------------VRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTVGLV 219
Query: 226 PNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRI 282
I ++ E V LA+SLHA + R +VP + YPLE LIDA + L
Sbjct: 220 SQIRKLTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKRTNP 279
Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECI 341
EYVML+G + A L K+ + +NLIP+N + C ++ + F E +
Sbjct: 280 MIEYVMLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFREIV 339
Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQITG 384
G IR G DI +ACGQL ++ R K + E G
Sbjct: 340 VSYGSFCTIRKTMGADIDSACGQL--ITLRENKQSQNEHNAKG 380
>gi|119896414|ref|YP_931627.1| ribosomal RNA large subunit methyltransferase N [Azoarcus sp. BH72]
gi|119668827|emb|CAL92740.1| probable Fe-S cluster redox enzyme [Azoarcus sp. BH72]
Length = 390
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 99/378 (26%), Positives = 168/378 (44%), Gaps = 48/378 (12%)
Query: 12 MMREELEEALLKIGI-PQRHVR-MRTSQIWKWIYV-------RGIRDFQGMSDISQEVRH 62
M ++L + L +G P R +R W+ + +DF + +R
Sbjct: 44 MRIDDLTQRLRALGAKPAHEQRVLRA-----WVQRSSMDNRRQAAKDF-----LPLALRE 93
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
L E + S R G + + R LCVS+Q+
Sbjct: 94 ALP--ALTAELEGLARLRSQHPGEDGSARLLVELADGQTVESVLLL----RDGLCVSTQL 147
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG + L+R L + EI+ QV+LARSL R + +
Sbjct: 148 GCAVGCVFCMTGREGLLRQLGSAEIVAQVVLARSL-------------------RPVKKV 188
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
V MGMGEP N DNV +++ + + G+ + + ST G R+ + + LA+
Sbjct: 189 VFMGMGEPAHNLDNVLEAIDLLGTAGGIG--HKNLVFSTVGDYRVFERLPRQRVKPALAL 246
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH DLR L+P + + L++ Y S I +++ +++G+NDSP +
Sbjct: 247 SLHTTRADLRAQLLPRAPQIAPQELVELGERYAR-STGYPIQYQWTLIEGVNDSPEEMDG 305
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++++L+G A +NLIP+N P E+ ++ V + + R G + +R G D+
Sbjct: 306 IVRLLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGG 365
Query: 362 CGQLKSLSKRIPKVPRQE 379
CGQL++ ++ + PR
Sbjct: 366 CGQLRARVVKMDRRPRTA 383
>gi|226945006|ref|YP_002800079.1| ribosomal RNA large subunit methyltransferase N [Azotobacter
vinelandii DJ]
gi|226719933|gb|ACO79104.1| Fe-S cluster redox enzyme, radical SAM family [Azotobacter
vinelandii DJ]
Length = 344
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 102/384 (26%), Positives = 171/384 (44%), Gaps = 54/384 (14%)
Query: 12 MMREELEEALLKIGIPQRHVRM--RTSQIWKWIY---------VRGIRDFQGMSDISQEV 60
M + + L +G H+ R W++ + RDF + V
Sbjct: 1 MKIADFHQRLADLGAKSPHIGRIDRA-----WLHGWPLDTGTRQQQARDF-----LPLGV 50
Query: 61 RHLLNQ-HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
R + + H ++ + E + DG+ + L+ G +E+V +P R LCV
Sbjct: 51 REAMPELHATVAGLARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCV 102
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC++ C FC TG L+R L + EI+ QV LAR R
Sbjct: 103 SSQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVALARRF-------------------RP 143
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
+ +V MGMGEP N DNV +++ + + G+ + + ST G R+ +
Sbjct: 144 VKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIG--HKNLVFSTVGDPRVFERLPQGRVKP 201
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLH+ LR L+P + + L++ Y + I +++ +L+GINDS
Sbjct: 202 ALALSLHSSDAGLRRRLLPHAPRLDPQELVELAEAYARRT-GYPIQYQWTLLEGINDSLE 260
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
+ ++++L+G A +NLIP+N +Y D + IV + G + +R G D
Sbjct: 261 EMDGILRLLRGKYAVMNLIPYNSLEADDYRRPDGERIVGLVRYLHGRGVLTKVRNSAGQD 320
Query: 358 ILAACGQLKSLSKRIPKVPRQEMQ 381
I CGQL++ + + + M+
Sbjct: 321 IDGGCGQLRARAMQPARSRPSRMR 344
>gi|328773686|gb|EGF83723.1| hypothetical protein BATDEDRAFT_3639 [Batrachochytrium
dendrobatidis JAM81]
Length = 368
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 104/371 (28%), Positives = 176/371 (47%), Gaps = 45/371 (12%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
L+EA I +H ++W++ R + F + ++ ++ +L F+ + +++
Sbjct: 9 LKEAFNLHNISPKH----AQKLWRYFIQRNAKSFTDVPELPKQALQILESDFTPMTSKVI 64
Query: 77 DEKI-SCDGTRKWLLRFPARCIGGPVEIE----------TVYIPEKSRGTLCVSSQVGCS 125
+ T K L+ V + + R TLCVSSQVGC+
Sbjct: 65 SRTDNADGSTTKLLVELQDGQRIESVIMRYEKMTKDMDGNIKYRSNKRATLCVSSQVGCA 124
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TGT L+ NL+A EIL Q++ A + I N+V M
Sbjct: 125 MGCTFCATGTMGLLANLSAGEILEQLVHANQV-------------------EHIRNVVFM 165
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
GMGEPL N+ V +++ D+ S RI++ST G VP + + ++ + LA+SLH
Sbjct: 166 GMGEPLDNYPAVLMAVNGMIDTSRFGLSPSRISVSTVGVVPRMRSLVRDMPDIGLALSLH 225
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--------ARRITFEYVMLKGINDSP 296
A + +LR +VP + + +E +++A + N + + EYV++ INDS
Sbjct: 226 APTQELRTQIVPTAKAWNIERIMEAADVFIAQQNANVKSHNRRKHVLIEYVLIADINDSE 285
Query: 297 RDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPR 354
A L K+L+G +N+IP+NP +Y Q+ + F + ++R + +R
Sbjct: 286 VVAHQLGKLLEGRDVLLNVIPYNPTSVPYDYKPPLQETMKVFVDIVRRVYNVHTLLRQEL 345
Query: 355 GLDILAACGQL 365
G DI +ACGQL
Sbjct: 346 GQDISSACGQL 356
>gi|327480837|gb|AEA84147.1| Fe-S-cluster redox protein [Pseudomonas stutzeri DSM 4166]
Length = 342
Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats.
Identities = 107/380 (28%), Positives = 169/380 (44%), Gaps = 54/380 (14%)
Query: 12 MMREELEEALLKIGIPQRH-VRM-RTSQIWKWI---------YVRGIRDFQGMSDISQEV 60
M + ++ L IG RH RM R W+ + DF + V
Sbjct: 1 MRIPDFQQRLADIGAKPRHIGRMTRA-----WLKGLPLDVGRRQQQAEDF-----LPLSV 50
Query: 61 RHLLNQ-HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
R L I + E + DG+ + L+ G +E+V +P R LCV
Sbjct: 51 REGLPALSLEIDALARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCV 102
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC++ C FC TG L+R L + EI+ QV LAR R
Sbjct: 103 SSQVGCAVGCVFCMTGKSGLLRQLGSAEIVAQVALARRF-------------------RP 143
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
+ +V MGMGEP N DNV +++ + G+ + + ST G + R+ + +
Sbjct: 144 VKKVVFMGMGEPAHNLDNVLEAIDLLGTEGGIG--HKNLVFSTVGDLRVFERLPQQRVKP 201
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLH+ LR L+P + E L++ Y + I +++ +LKGIND+
Sbjct: 202 ALALSLHSTDGALRQALLPRAPQIAPEELVELGETYARAT-GFPIQYQWTLLKGINDNQE 260
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
+ ++++LKG A +NLIP+N Y + + IV + G + +R G D
Sbjct: 261 EMDGILRLLKGKYAVMNLIPYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQD 320
Query: 358 ILAACGQLKSLSKRIPKVPR 377
I CGQL++ ++++ R
Sbjct: 321 IDGGCGQLRARAEQVLGRRR 340
>gi|254234935|ref|ZP_04928258.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719]
gi|126166866|gb|EAZ52377.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719]
Length = 346
Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats.
Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 50/384 (13%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
M ++L + L +G H + W+ R DF + VRH
Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52
Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L Q + + E + DG+ + L+ R V RG LCVS+
Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQ--------MVESVLLPRGGLCVST 104
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TG L+R + + E++ QV+LAR R +
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
+V MGMGEP N DNV +++ + G+ + + ST G R+ + + L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGGIG--HKNLVFSTVGDPRVFERLPRQRVKPAL 203
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS +
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++LKG A +NLIP+N G Y + IV + G + +R G DI
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
CGQL++ + + R +
Sbjct: 323 GGCGQLRARAAQGTAERRIPARQA 346
>gi|15597036|ref|NP_250530.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
aeruginosa PAO1]
gi|107101272|ref|ZP_01365190.1| hypothetical protein PaerPA_01002306 [Pseudomonas aeruginosa PACS2]
gi|313110540|ref|ZP_07796425.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa
39016]
gi|81622417|sp|Q9I2Q6|Y1839_PSEAE RecName: Full=Probable RNA methyltransferase PA1839
gi|9947826|gb|AAG05228.1|AE004610_1 hypothetical protein PA1839 [Pseudomonas aeruginosa PAO1]
gi|310882927|gb|EFQ41521.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa
39016]
Length = 346
Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats.
Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 50/384 (13%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
M ++L + L +G H + W+ R DF + VRH
Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52
Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L Q + + E + DG+ + L+ R V RG LCVS+
Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQ--------MVESVLLPRGGLCVST 104
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TG L+R + + E++ QV+LAR R +
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
+V MGMGEP N DNV +++ + G+ + + ST G R+ + + L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGGIG--HKNLVFSTVGDPRVFERLPRQRVKPAL 203
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS +
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++LKG A +NLIP+N G Y + IV + G + +R G DI
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
CGQL++ + + R +
Sbjct: 323 GGCGQLRARATQGTAERRIPARQA 346
>gi|218892205|ref|YP_002441072.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
gi|218772431|emb|CAW28213.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
Length = 346
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 50/384 (13%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
M ++L + L +G H + W+ R DF + VRH
Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52
Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L Q + + E + DG+ + L+ R V RG LCVS+
Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQ--------MVESVLLPRGGLCVST 104
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TG L+R + + E++ QV+LAR R +
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
+V MGMGEP N DNV +++ + G+ + + ST G R+ + + L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGGIG--HKNLVFSTVGDPRVFERLPRQRVKPAL 203
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS +
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++LKG A +NLIP+N G Y + IV + G + +R G DI
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
CGQL++ + + R +
Sbjct: 323 GGCGQLRARATQATVERRIPARQA 346
>gi|146282579|ref|YP_001172732.1| Fe-S-cluster redox protein [Pseudomonas stutzeri A1501]
gi|205829636|sp|A4VLN9|Y2231_PSEU5 RecName: Full=Probable RNA methyltransferase PST_2231
gi|145570784|gb|ABP79890.1| predicted Fe-S-cluster redox enzyme [Pseudomonas stutzeri A1501]
Length = 342
Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 107/380 (28%), Positives = 168/380 (44%), Gaps = 54/380 (14%)
Query: 12 MMREELEEALLKIGIPQRH-VRM-RTSQIWKWI---------YVRGIRDFQGMSDISQEV 60
M + ++ L IG RH RM R W+ + DF + V
Sbjct: 1 MRIPDFQQRLADIGAKPRHIGRMTRA-----WLKGLPLDVGRRQQQAEDF-----LPLSV 50
Query: 61 RHLLNQ-HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
R L I + E + DG+ + L+ G +E+V +P R LCV
Sbjct: 51 REGLPALSLEIDALARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCV 102
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC++ C FC TG L+R L + EI+ QV LAR R
Sbjct: 103 SSQVGCAVGCVFCMTGKSGLLRQLGSAEIVAQVALARRF-------------------RP 143
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
+ +V MGMGEP N DNV +++ + G+ + + ST G + R+ + +
Sbjct: 144 VKKVVFMGMGEPAHNLDNVLEAIDLLGTEGGIG--HKNLVFSTVGDLRVFERLPQQRVKP 201
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLH+ LR L+P + E L++ Y + I +++ +LKGIND+
Sbjct: 202 ALALSLHSTDGALRQALLPRAPQIAPEELVELGETYARAT-GFPIQYQWTLLKGINDNQE 260
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
+ ++++LKG A +NLIP+N Y + + IV + G + +R G D
Sbjct: 261 EMDGILRLLKGKYAVMNLIPYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQD 320
Query: 358 ILAACGQLKSLSKRIPKVPR 377
I CGQL++ ++ + R
Sbjct: 321 IDGGCGQLRARAEHVLGRRR 340
>gi|254240233|ref|ZP_04933555.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192]
gi|126193611|gb|EAZ57674.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192]
Length = 346
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 50/384 (13%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
M ++L + L +G H + W+ R DF + VRH
Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52
Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L Q + + E + DG+ + L+ R V RG LCVS+
Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQ--------MVESVLLPRGGLCVST 104
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TG L+R + + E++ QV+LAR R +
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
+V MGMGEP N DNV +++ + G+ + + ST G R+ + + L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGGIG--HKNLVFSTVGDPRVFERLPRQRVKPAL 203
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS +
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++LKG A +NLIP+N G Y + IV + G + +R G DI
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
CGQL++ + + R +
Sbjct: 323 GGCGQLRARATQGTVERRIPARQA 346
>gi|152984959|ref|YP_001348813.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7]
gi|205829651|sp|A6V6X8|Y3453_PSEA7 RecName: Full=Probable RNA methyltransferase PSPA7_3453
gi|150960117|gb|ABR82142.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7]
Length = 346
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 105/384 (27%), Positives = 171/384 (44%), Gaps = 57/384 (14%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
M ++L + L +G H + W+ R DF + VR
Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLSVRQ 52
Query: 63 LL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
L + + E + DG+ + L+ R +E+V +P RG LCVS
Sbjct: 53 GLPRVAEELE-GIARLHSEHPASDGSSRLLVELADR-----QRVESVLLP---RGGLCVS 103
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+QVGC++ C FC TG L+R + + E++ QV+LAR R +
Sbjct: 104 TQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAV 144
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238
+V MGMGEP N DNV +++ + G+ + + ST G R+ G+ +
Sbjct: 145 KKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIG--HKNLVFSTVGDPRVFERLPGQRVKPA 202
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLH+ +LR L+P E L++A Y + I +++ +L+G+NDS +
Sbjct: 203 LALSLHSTDAELRRRLLPKAPPLSPEELVEAGETYARQVD-YPIQYQWTLLEGVNDSLEE 261
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
++++LKG A +NLIP+N G Y + IV + G + +R G DI
Sbjct: 262 MDGILRLLKGRFAVMNLIPYNSMDGDAYRRPRGERIVELVRYLHSRGVLTKVRNSAGQDI 321
Query: 359 LAACGQLKSLSK-----RIPKVPR 377
CGQL++ ++ R +V R
Sbjct: 322 DGGCGQLRARAEGAAPQRHIRVRR 345
>gi|116049791|ref|YP_791402.1| hypothetical protein PA14_40730 [Pseudomonas aeruginosa UCBPP-PA14]
gi|122258902|sp|Q02KY4|Y4073_PSEAB RecName: Full=Probable RNA methyltransferase PA14_40730
gi|115585012|gb|ABJ11027.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 346
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 50/384 (13%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---------IRDFQGMSDISQEVRH 62
M ++L + L +G H + W+ R DF + VRH
Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQPAEDF-----LPLGVRH 52
Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L Q + + E + DG+ + L+ R V RG LCVS+
Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQ--------MVESVLLPRGGLCVST 104
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TG L+R + + E++ QV+LAR R +
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
+V MGMGEP N DNV +++ + G+ + + ST G R+ + + L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGGIG--HKNLVFSTVGDPRVFERLPLQRVKPAL 203
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS +
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++LKG A +NLIP+N G Y + IV + G + +R G DI
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
CGQL++ + + R +
Sbjct: 323 GGCGQLRARATQGTAERRIPARQA 346
>gi|34497708|ref|NP_901923.1| ribosomal RNA large subunit methyltransferase N [Chromobacterium
violaceum ATCC 12472]
gi|81655644|sp|Q7NVT9|Y2253_CHRVO RecName: Full=Probable RNA methyltransferase CV_2253
gi|34103564|gb|AAQ59925.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 352
Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats.
Identities = 89/332 (26%), Positives = 144/332 (43%), Gaps = 36/332 (10%)
Query: 56 ISQEVRHLLNQHF-SIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
VR L I I + DG+ + L+ G +E+V +P R
Sbjct: 46 FPLSVREGLAPIAARIEKLARIHSRHDADDGSLRLLVGL-----GDGQMVESVLLP---R 97
Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
LCVSSQVGC++ C+FC TG L+R L + EI QV LAR +
Sbjct: 98 DGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRI---------------- 141
Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
R + +V MGMGEP N +NV +++ + + + ST G R+ +
Sbjct: 142 ---RPVKKVVFMGMGEPAHNMENVLEAIQWLGTD--GNIGHKNLVFSTVGDARVFERLPQ 196
Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E+ LA+SLH DLR L+P + L++ Y I +++ +L G+
Sbjct: 197 LEVKPALALSLHTTRADLREQLLPRAPRIAPAELVELGEAYARRV-GYPIQYQWTLLAGV 255
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
NDS + ++LKG +N+IP+N G + + + + +G + +R
Sbjct: 256 NDSQEEMDAAARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQAIKRYLHDNGVLTKVRD 315
Query: 353 PRGLDILAACGQLKSLSK---RIPKVPRQEMQ 381
G D+ CGQL++ + ++ R+E
Sbjct: 316 SAGQDVDGGCGQLRARAAHVIDASRLRRREQA 347
>gi|296389768|ref|ZP_06879243.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
aeruginosa PAb1]
Length = 346
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 50/384 (13%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---------IRDFQGMSDISQEVRH 62
M ++L + L +G H + W+ R DF + VRH
Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQPAEDF-----LPLGVRH 52
Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
L Q + + E + DG+ + L+ R V RG LCVS+
Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQ--------MVESVLLPRGGLCVST 104
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC++ C FC TG L+R + + E++ QV+LAR R +
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
+V MGMGEP N DNV +++ + G+ + + ST G R+ + + L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGGIG--HKNLVFSTVGDPRVFERLPRQRVKPAL 203
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS +
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
++++LKG A +NLIP+N G Y + IV + G + +R G DI
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322
Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
CGQL++ + + R +
Sbjct: 323 GGCGQLRARATQGTAERRIPARQA 346
>gi|146307182|ref|YP_001187647.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp]
gi|205829635|sp|A4XU99|Y2155_PSEMY RecName: Full=Probable RNA methyltransferase Pmen_2155
gi|145575383|gb|ABP84915.1| Radical SAM domain protein [Pseudomonas mendocina ymp]
Length = 346
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 95/384 (24%), Positives = 157/384 (40%), Gaps = 52/384 (13%)
Query: 12 MMREELEEALLKIGIPQRHVR--MRTSQIWKWI----------YVRGIRDFQGMSDISQE 59
M +L + L +G +H+ R W+ + + +F +
Sbjct: 1 MQLADLTQRLAALGAKPQHIGRITRA-----WLQGKPLDTGTKHQK-TENF-----LPLS 49
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
VR L + + S R + + R LC+S
Sbjct: 50 VRQELPAIA--AELDALVRLRSEHPGADGSARLLVELADKQMVESVLLP----RDGLCIS 103
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC++ C FC TG L+R L++ E++ QV L R R +
Sbjct: 104 SQVGCAVGCVFCMTGKSGLLRQLSSAEMVAQVALGRRF-------------------RPV 144
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238
+V MGMGEP N DNV +++ + G+ + + ST G R+ + +
Sbjct: 145 KKVVFMGMGEPAHNLDNVLEAIDLLGTEGGIG--HKNLVFSTVGDPRVFERLPQQRVRPA 202
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
LA+SLH +LR L+P + E L++ Y + I +++ +LKGINDS ++
Sbjct: 203 LALSLHTTDAELRQRLLPKAPRIDPEQLMELGEAYARSID-YPIQYQWTLLKGINDSQQE 261
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
N++++ KG A +NLIP+N Y D + IV + G + +R G DI
Sbjct: 262 MDNILRLFKGKFAVLNLIPYNSLDADNYQRPDGERIVQMVRYLHSRGVLTKVRNSAGQDI 321
Query: 359 LAACGQLKSLSKRIPKVPRQEMQI 382
CGQL++ + + R +
Sbjct: 322 DGGCGQLRARAVDLVNTSRLRLSR 345
>gi|255024245|ref|ZP_05296231.1| hypothetical protein LmonocyFSL_13899 [Listeria monocytogenes FSL
J1-208]
Length = 220
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 85/210 (40%), Positives = 127/210 (60%), Gaps = 5/210 (2%)
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-E 234
++S++V+MG+GEP N+DNV L + + GL+ R IT+STSG P I +
Sbjct: 5 EERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANED 64
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND
Sbjct: 65 FQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVND 123
Query: 295 SPRDALNLIKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIR 351
++AL L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR
Sbjct: 124 HKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIR 183
Query: 352 TPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
G DI AACGQL+S + V + Q
Sbjct: 184 REHGTDIDAACGQLRSKQIKRVGVRERMKQ 213
>gi|332531263|ref|ZP_08407176.1| ribosomal RNA large subunit methyltransferase N [Hylemonella
gracilis ATCC 19624]
gi|332039370|gb|EGI75783.1| ribosomal RNA large subunit methyltransferase N [Hylemonella
gracilis ATCC 19624]
Length = 357
Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 100/372 (26%), Positives = 163/372 (43%), Gaps = 38/372 (10%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD----FQGMSDISQEVRHLLNQH 67
M E L L +G RH R ++W + D + + +R L
Sbjct: 1 MQIETLRRRLRALGANPRHQ-YRVLRLWSQ--AKPQDDGPRPIENF--LPASLRAALPDI 55
Query: 68 FS--IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ E DG+R+ ++ + V + T +++ TLCVS+QVGC+
Sbjct: 56 ARDLAALATLDAEHPGEDGSRRLVVALADGQLVESVLMPTAGSRQRA-PTLCVSTQVGCA 114
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG L+R L + EI+ QV LAR+ + +V M
Sbjct: 115 VGCVFCMTGRAGLIRQLGSAEIVAQVALARASAT-------------------VRRVVFM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEEIGVMLAI 241
GMGEP N DNV +++ + + + ST G + +++ LA+
Sbjct: 156 GMGEPAHNLDNVLEAIDLL--GTAGDIGHKNLVFSTVGDPRVFEALQSRGADQVRPALAL 213
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH DLR L+P + E L+DA Y L+ A I +++ +L GINDS +
Sbjct: 214 SLHTTRADLRAQLLPRAPRLTPEELVDAGERYARLT-AYPIQYQWTLLDGINDSDEEIEG 272
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L+++L+G A +NLIP+N Y Q+ V + + + G + +R G D+
Sbjct: 273 LVRLLQGKYAILNLIPYNAVDDLPYRRPAQEAAVAMARRLHQRGILTKLRQSAGQDVDGG 332
Query: 362 CGQLKSLSKRIP 373
CGQL++ + +
Sbjct: 333 CGQLRARAVQAQ 344
>gi|307824047|ref|ZP_07654274.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
gi|307734831|gb|EFO05681.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
Length = 233
Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats.
Identities = 107/245 (43%), Positives = 140/245 (57%), Gaps = 13/245 (5%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC+TG Q L RNLT EI+ Q L A L E +I NIV M
Sbjct: 1 MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFM 49
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
G GEPL NFD VKK+ I G S +RIT+ST+G++P + R +EI V LA+SLH
Sbjct: 50 GQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSLH 109
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
+ + RN L+PIN KYPL+ ++ P L+ + IT+EY+++K ND+P DA L
Sbjct: 110 SPFEEKRNELIPINIKYPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDTPDDAEKLGT 168
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
IL G A INLIPFN +PG Y D I F E + + IR+ +G D+LAACGQ
Sbjct: 169 ILAGKSAYINLIPFNSFPGSHYNRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQ 228
Query: 365 LKSLS 369
L S +
Sbjct: 229 LNSKN 233
>gi|317405650|gb|EFV85949.1| ribosomal RNA large subunit methyltransferase N 1 [Achromobacter
xylosoxidans C54]
Length = 348
Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/382 (24%), Positives = 162/382 (42%), Gaps = 52/382 (13%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWI---------YVRGIRDFQGMSDISQEVRH 62
M + ++ L +G H R + W+ + R ++ + +R
Sbjct: 1 MRYSDFDQRLAALGAQPAH---RGRVMRAWLTGQAFDSDTWRRRFDNY-----LPLALRE 52
Query: 63 LLNQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + V + + + L+ +E+V +P R LCVS+Q
Sbjct: 53 ALPALSAELDGLARVRSEHAGHDGSRLLVDL-----ADGQMVESVLLP---RDGLCVSTQ 104
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC++ C FC TG L+R + + EIL QV+LAR R +
Sbjct: 105 VGCAVGCRFCMTGKSGLIRQVASMEILAQVVLARR-------------------QRAVKK 145
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+V MGMGEP N DNV +++++ + + + ST G + + LA
Sbjct: 146 VVFMGMGEPAHNLDNVLEAINLLGTE--GNIGHKNLVFSTVGDPRVFEALPRQPVKPALA 203
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLH +LR L+P K + L++ Y I +++ +LKG+ND +
Sbjct: 204 LSLHTTRAELREHLLPRAPKIAPQDLVEMGERYAR-DTGYPIQYQWTLLKGVNDGDDELD 262
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+ ++LKG +N+IPFN G +Y + + I + R G + +R G D+
Sbjct: 263 AIPRLLKGKFGVLNVIPFNSLEGDDYQRPETERIREIVRILHRRGVLTKVRNSAGQDVDG 322
Query: 361 ACGQLKSL---SKRIPKVPRQE 379
CGQL++ ++R+ ++ R
Sbjct: 323 GCGQLRARAVGAERVVRLRRSR 344
>gi|301793926|emb|CBW36322.1| SAM-dependent methyltransferase [Streptococcus pneumoniae INV104]
Length = 243
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 79/260 (30%), Positives = 140/260 (53%), Gaps = 22/260 (8%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN F + +
Sbjct: 1 MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQG 56
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+ S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G
Sbjct: 57 IVQESADGTVKYLFELP-----DGMLIETVLMCQHYGLSVCVTTQVGCNIGCTFCASGLI 111
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
K R+L EI+ Q++L + + +IS+IV+MG+GEP N++N
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVMGIGEPFDNYNN 159
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
V +D G++ R IT+S SG I +E + V LA+SLHA +N+LR+ ++
Sbjct: 160 VLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIM 219
Query: 256 PINRKYPLEMLIDACRHYPG 275
INR +P+ ++ +
Sbjct: 220 KINRAFPIRLVRNLVHFIID 239
>gi|255017664|ref|ZP_05289790.1| hypothetical protein LmonF_07755 [Listeria monocytogenes FSL
F2-515]
Length = 218
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C+FC +G K R+LTA EI+ Q++ + L ++ ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD------------GRNLEERVSHVV 159
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+MG+GEP N+DNV L + + GL+ R IT+STSG P I E
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANE 210
>gi|108761479|ref|YP_634582.1| ribosomal RNA large subunit methyltransferase N [Myxococcus xanthus
DK 1622]
gi|122980702|sp|Q1CYE1|Y6459_MYXXD RecName: Full=Probable RNA methyltransferase MXAN_6459
gi|108465359|gb|ABF90544.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
Length = 358
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 104/364 (28%), Positives = 154/364 (42%), Gaps = 31/364 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMS---DISQEVRHLL 64
+L + +ELE AL P +++ ++ G + + ++ + + V L
Sbjct: 2 NLKSLSLQELEAALA----PLSPSPAAVRKVFAAVFAHGAQSVEDVASARQVPRRVGDHL 57
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
H + IV+ + + DG K+L P G + +CVSSQVGC
Sbjct: 58 RAHAEMPKLAIVERRRADDGFVKYLFDSPL----GGRIEAVRIPIFDEKYVICVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC TG RNL EIL QVL R R + +V
Sbjct: 114 ALACDFCMTGKLGFKRNLQTWEILDQVLQVRE-----------------EADRPVRGVVF 156
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N+ ++ I G S + IT ST+G VP I R E LA S+
Sbjct: 157 MGMGEPLLNYKETLRAADILRHPAGFSIAGEAITFSTAGHVPAIRRYVREGHPYRLAFSV 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+ + R ++PI + +PL LI A R Y + R YV + G N DA L
Sbjct: 217 TSAIAEKRAKVLPIEKTHPLPELIAAIREYSEVR-RERAMIAYVAISGFNMGREDAEALK 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+GI K++LI P +YL +++ F + ++ R G +I AACG
Sbjct: 276 VAFEGIRIKVDLIDVTD-PTGKYLPPTPEELSAFRDHLQILKSPVARRYSGGKEIGAACG 334
Query: 364 QLKS 367
L +
Sbjct: 335 TLAA 338
>gi|57505365|ref|ZP_00371294.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195]
gi|57016501|gb|EAL53286.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195]
Length = 286
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 85/371 (22%), Positives = 136/371 (36%), Gaps = 100/371 (26%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
+++ ++ EEL E + R QI +WIY + DF MS++ + +R L ++
Sbjct: 6 NILDLLPEELNEKI--------QPMFRVKQICQWIYQKYADDFSKMSNLPKNLREELAKN 57
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--------KSRGTLCVS 119
+ + + E+ S DG+ K+L V + ++ T+CVS
Sbjct: 58 YHFEPLKCIKEERSKDGSIKYLFELEDGLRIESVLLPMKEEKFDEEGKRLSHAKFTICVS 117
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC CSFC T L RNL+A EI+ Q+L + R++
Sbjct: 118 SQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKR-------------QNHIPYERRV 164
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
NIV MGMGEPL N +NV K++
Sbjct: 165 -NIVYMGMGEPLDNLNNVAKAVREFP---------------------------------- 189
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+ + ++ + I+ + L N + ++
Sbjct: 190 -------IDMRKKVMFEYLLIDGINDKIEHAKELVKLLNGIKAKVNLILF---------- 232
Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
NP G Y + ++ V F + + + G + IR +GLDI
Sbjct: 233 -------------------NPHQGSIYKRPNLENAVKFQDLLSQKGVTCTIRESKGLDIS 273
Query: 360 AACGQLKSLSK 370
AACGQLK K
Sbjct: 274 AACGQLKEREK 284
>gi|219114843|ref|XP_002178217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409952|gb|EEC49882.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 296
Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 106/313 (33%), Positives = 148/313 (47%), Gaps = 31/313 (9%)
Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
V E ++ DGT K LL+ VE + E+ R TLCVSSQVGC C+FC TG
Sbjct: 1 VHESVAADGTTKLLLQLVDGLQ---VETVIIPWDERQRSTLCVSSQVGCRQACTFCLTGR 57
Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
++R+L+A+EIL+QVLLA+ + + I NIV MGMGEP N D
Sbjct: 58 MGILRSLSADEILVQVLLAKRACRE-------------NNIYPIDNIVFMGMGEPADNTD 104
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
V ++ ++ + + RRIT+ST P+ + V LA S+HA +R LV
Sbjct: 105 AVVRAANVLTHQQQFQLTPRRITISTVAPSPDAFLKLGKAPVALAWSVHASREAVRRELV 164
Query: 256 PINRKYPLEMLIDA-CRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
P KY +E L + + S + R E +L INDS DA +L + + +
Sbjct: 165 P-TTKYTMEELREGYIKALLDRSRSMRTTMLEVTLLDKINDSLEDAEHLADFCQPLLKSV 223
Query: 314 -------NLIPFNPW-----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
NLIP+N P Y + I F + + G +RT RG D AA
Sbjct: 224 PGIKLVVNLIPWNDISASFGPASVYRKPTTERIGEFQKALIGRGILCYVRTTRGDDEGAA 283
Query: 362 CGQLKSLSKRIPK 374
CGQL + +K K
Sbjct: 284 CGQLATTNKVKHK 296
>gi|308802175|ref|XP_003078401.1| unnamed protein product [Ostreococcus tauri]
gi|116056853|emb|CAL53142.1| unnamed protein product [Ostreococcus tauri]
Length = 368
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 89/323 (27%), Positives = 134/323 (41%), Gaps = 43/323 (13%)
Query: 56 ISQEVRHLLNQH---FSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEK 111
+ + V L F + + E S T K ++ V K
Sbjct: 6 LPRIVVERLRDGTSGFELYTTRVAHESASSDGSTTKLIVELQDGHK----IEACVMRHAK 61
Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
R TLCVSSQVGC + C+FC TGT + NL + EIL Q+ A +
Sbjct: 62 GRTTLCVSSQVGCKMGCTFCATGTLGELGNLASFEILEQLAHANRVAA------------ 109
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
PL N+D+V +++ + +D + S +IT+ST G +P + +
Sbjct: 110 ------------------PLNNYDSVIEAIGVMTDDKAFALSASKITVSTVGVIPRMRTL 151
Query: 232 GEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
+ LA+SLHA + +LR +VP Y L+ L+ Y + EY +L
Sbjct: 152 TRDAPGTCLALSLHAPTQELRQKIVPTATAYKLDDLMRVLEEYLASGPKMKTMIEYCVLG 211
Query: 291 GINDSPRDALNLIKILKGIPAKI--NLIPFNPWP-GCEYLCSDQKDIVTFSECI-KRSGY 346
G+ND A L ++ +G KI NLIP NP ++ + + E + K+ G
Sbjct: 212 GVNDDETCAEKLGELFRGKEEKIILNLIPLNPTDTPAGHVPPTPEAVRKMMEILMKKYGL 271
Query: 347 SSPIRTPRGLDILAACGQLKSLS 369
R G DI ACGQL +
Sbjct: 272 FVTRRHTMGDDIAGACGQLALKT 294
>gi|224825445|ref|ZP_03698550.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
gi|224602366|gb|EEG08544.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
Length = 354
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 88/317 (27%), Positives = 138/317 (43%), Gaps = 35/317 (11%)
Query: 56 ISQEVRHLL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
VR+ L I + + DG+ + L++ +E+V +P
Sbjct: 46 FPLSVRNGLPPIAAQVE-GLARIQSQHPAADGSLRLLVQLN-----DGQMVESVLLP--- 96
Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
R LCVSSQVGC++ C+FC TG L+R L + EI QV LAR +
Sbjct: 97 RDGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRI--------------- 141
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
R + +V MGMGEP N DNV ++ + + + LST G R+
Sbjct: 142 ----RPVKKVVFMGMGEPAHNLDNVLDAIDLLGSD--GHIGHKNLVLSTVGDPRVFERLP 195
Query: 233 EEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
++ LA+SLH +LR L+P +Y L+ Y I +++ +L G
Sbjct: 196 QQHVKPALALSLHTTRAELRAQLLPRAPRYDPAELVALGEDYARRV-GYPIQYQWTLLAG 254
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
+ND+ + +++LKG +N+IP+N G Y + I + G + +R
Sbjct: 255 VNDTQEEMDAAVRLLKGKYGVLNIIPYNSVEGDHYQRPSAERIHLMKRYLHDHGVLTKVR 314
Query: 352 TPRGLDILAACGQLKSL 368
G DI CGQL++
Sbjct: 315 DSAGQDIDGGCGQLRAR 331
>gi|86160645|ref|YP_467430.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85777156|gb|ABC83993.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
Length = 309
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 99/316 (31%), Positives = 146/316 (46%), Gaps = 30/316 (9%)
Query: 61 RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
R +L++ + +++ + DG RK+L P V I + +C
Sbjct: 16 RSVLDEVDALATPGELRLLESVDAKDGFRKYLFELPDGLRVETVRIPL----YDTHHVVC 71
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ GC+L C+FC T L R+L + E++ Q+L R R
Sbjct: 72 LSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSER 114
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
I+ +V MG GEP N+D V + D G RRI++ST+G VP I R E
Sbjct: 115 PITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHK 174
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
L ISL+A R L+P+ + +PL+ L++A R + L R+T EYVM+ G+N
Sbjct: 175 FRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAAL--RGRVTLEYVMISGVNVGE 232
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPR 354
DA L ++L GIP ++N I N G Y D+ + F + + R G R
Sbjct: 233 EDAAALGRLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPVVRRYSG 291
Query: 355 GLDILAACGQLKSLSK 370
G D AACG L S +
Sbjct: 292 GQDEHAACGMLASRRR 307
>gi|219121243|ref|XP_002185849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582698|gb|ACI65319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 290
Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats.
Identities = 100/307 (32%), Positives = 141/307 (45%), Gaps = 29/307 (9%)
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGT 135
S D T K LLR +E+ETV IP R TLCVSSQVGC C+FC TG
Sbjct: 1 HISQSRDSTTKLLLRLS-----DGLEVETVIIPWTGGRSTLCVSSQVGCRQGCTFCATGR 55
Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
+R+L A+EIL Q+ AR + ++N+V MGMGEP N D
Sbjct: 56 MGKLRSLNADEILAQLFFARKICRQKNLP-------------PVTNVVFMGMGEPADNKD 102
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
V ++ I + S ++T+ST P+ +LA S+HA +++LR LV
Sbjct: 103 AVIRATDIMTTRELFQLSASKVTVSTVAPTPDSFLQFAHAHCVLAWSVHAANDELRRQLV 162
Query: 256 PINRKYPLEMLIDACRH--YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI---- 309
P K+ + L N R E ++ GINDS ++A L+ + I
Sbjct: 163 P-TTKHAMTELRQGLIDTLLIRPHNFRTTMLEVALISGINDSEKEADELVDFAQVIIDEV 221
Query: 310 -PAK--INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
K +NLIPFN Y + + F + ++ G + IRT RG D AACGQL
Sbjct: 222 PGCKLVVNLIPFNDIGQNRYTKPSMEAVSVFQKRLREFGLVAHIRTTRGDDESAACGQLA 281
Query: 367 SLSKRIP 373
+ ++
Sbjct: 282 TNKQKQR 288
>gi|325677606|ref|ZP_08157260.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
gi|324110698|gb|EGC04860.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
Length = 377
Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats.
Identities = 98/364 (26%), Positives = 155/364 (42%), Gaps = 59/364 (16%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQG-MSDISQEVRHLLNQHF 68
+E +G R ++K +Y G+ M+ + +
Sbjct: 20 YNYTFDE---VAKCMGEE------RAKSLFKTLYKSGVSPKNQTMT---------IKDIY 61
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
T K+ IETV I ++ T+CVS+ VGC + C
Sbjct: 62 V------------GGDTTKYAFELQ-----DGYCIETVCIKRRTGNTVCVSTMVGCPVGC 104
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FC +G +RNL+ EI+ Q++L + +++ IV MGMG
Sbjct: 105 IFCASGKNGFIRNLSPAEIVQQIVLLK---------------------ERVNRIVFMGMG 143
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
EPL N+DN+ KS+ I D GL+F I +ST G V + R+ EE + +SLHA
Sbjct: 144 EPLFNYDNLIKSIHILRDRNGLNFPTDGINVSTVGPVEQLKRLREEHLKIQFTLSLHATD 203
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
RN+++P + + +++A Y N +IT Y++ GIND D L K +
Sbjct: 204 QATRNMIMPHMKSNSIHSVVEAALSYSERHNR-KITIAYLLAPGINDRASDVRQLGKWFR 262
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
G INL+ +N +++ +V F ++ +G +R RG I AACGQL S
Sbjct: 263 GKNVLINLLQYNETACKRIKRPNKQQLVAFKIRLEEAGLEVKLRESRGNRIKAACGQLVS 322
Query: 368 LSKR 371
+
Sbjct: 323 DYNK 326
>gi|71906796|ref|YP_284383.1| radical SAM family protein [Dechloromonas aromatica RCB]
gi|123733307|sp|Q47GW8|Y1157_DECAR RecName: Full=Probable RNA methyltransferase Daro_1157
gi|71846417|gb|AAZ45913.1| Radical SAM [Dechloromonas aromatica RCB]
Length = 357
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 85/318 (26%), Positives = 151/318 (47%), Gaps = 35/318 (11%)
Query: 56 ISQEVRHLL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
+ Q +R L + S + + E DG+ + L+ +E+V +P
Sbjct: 46 LPQALRTALPALQEELSALA-RVRSEHPGEDGSSRLLVEL-----ADGQTVESVLLP--- 96
Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
R LC+S+Q+GC++ C+FC TG L+R +++ E++ QV+L R
Sbjct: 97 RDGLCISTQIGCAVGCTFCMTGRDGLLRQVSSAEMVAQVVLGR----------------- 139
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231
RK++ +V MGMGEP N DNV +++ G+ + + ST G R+
Sbjct: 140 --GRRKVTRVVFMGMGEPSHNMDNVLEAIDTLGTYGGIG--HKNLVFSTVGDRRVFDRLP 195
Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
+ + LA+SLH+ +LR L+P L++ HY + I +++ ++ G
Sbjct: 196 QQRVVPALALSLHSTRAELRAELLPKAPHIDPTELVELAEHYAR-TTGYPIQYQWTLIDG 254
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
INDS + ++++L G A +NLIP+N +Y + I T ++ + G + +R
Sbjct: 255 INDSIEEMDGIVRLLTGKYAIMNLIPYNATATLDYRRPSLEHITTLTKYLHAKGIRTTVR 314
Query: 352 TPRGLDILAACGQLKSLS 369
G D+ CGQL++ +
Sbjct: 315 NSAGQDVDGGCGQLRART 332
>gi|205829721|sp|Q2IHD1|Y4229_ANADE RecName: Full=Probable RNA methyltransferase Adeh_4229
Length = 338
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 99/316 (31%), Positives = 146/316 (46%), Gaps = 30/316 (9%)
Query: 61 RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
R +L++ + +++ + DG RK+L P V I + +C
Sbjct: 45 RSVLDEVDALATPGELRLLESVDAKDGFRKYLFELPDGLRVETVRIPL----YDTHHVVC 100
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ GC+L C+FC T L R+L + E++ Q+L R R
Sbjct: 101 LSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSER 143
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
I+ +V MG GEP N+D V + D G RRI++ST+G VP I R E
Sbjct: 144 PITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHK 203
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
L ISL+A R L+P+ + +PL+ L++A R + L R+T EYVM+ G+N
Sbjct: 204 FRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAAL--RGRVTLEYVMISGVNVGE 261
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPR 354
DA L ++L GIP ++N I N G Y D+ + F + + R G R
Sbjct: 262 EDAAALGRLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPVVRRYSG 320
Query: 355 GLDILAACGQLKSLSK 370
G D AACG L S +
Sbjct: 321 GQDEHAACGMLASRRR 336
>gi|115377656|ref|ZP_01464850.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
gi|310824447|ref|YP_003956805.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
aurantiaca DW4/3-1]
gi|115365318|gb|EAU64359.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
gi|309397519|gb|ADO74978.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
aurantiaca DW4/3-1]
Length = 361
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 104/362 (28%), Positives = 155/362 (42%), Gaps = 31/362 (8%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM---SDISQEVRHLL 64
+L + EL EAL + +++ ++ G R + + + + V L
Sbjct: 2 NLKQLSLPELGEALAPLAPTPTA----VRKVFAAVFAHGARTVEEVCAAPQVPRRVAEHL 57
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
H + E+V+ + + DG K+L G + +CVSSQVGC
Sbjct: 58 RAHGQMPRLEVVERRQAEDGFVKYLF----GSPLGGRVEAVRIPIFDEKYIVCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC TG RNL EIL QV+ R R + +V
Sbjct: 114 ALACDFCMTGKLGFQRNLKTWEILDQVMQVRE-----------------EADRPVRGVVF 156
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N+ ++ I S+ G + S IT ST+G VP I R E LA S+
Sbjct: 157 MGMGEPLLNYAETIRAAQILSNPAGFAISGTAITFSTAGMVPAIRRYTSEGHPYRLAFSV 216
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
+ + R ++PI + +PL L++A R Y + R YV + G N DA L
Sbjct: 217 TSAIPEKRLKVLPIEKGHPLPELVEAIREYTQVR-RERAMIAYVAISGFNLGREDAQALK 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+GIP K++LI P +YL +++ F + ++ R G DI AACG
Sbjct: 276 DTFEGIPIKVDLIDVTD-PTGKYLPPSAEELKAFRDHLQILKAPIARRYSGGKDIGAACG 334
Query: 364 QL 365
L
Sbjct: 335 TL 336
>gi|217969807|ref|YP_002355041.1| ribosomal RNA large subunit methyltransferase N [Thauera sp. MZ1T]
gi|217507134|gb|ACK54145.1| Radical SAM domain protein [Thauera sp. MZ1T]
Length = 347
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 39/366 (10%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSD---ISQEVRHLLNQ-H 67
M E+L L +G H + W+ D ++ + + ++ L +
Sbjct: 1 MEIEQLRLRLRALGARPSHE---ARLLRAWL-QGHALDAGPRTESNRLPKALQAALPELE 56
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ V + + + L+ V R LCVS+QVGC++
Sbjct: 57 AELGALARVRSEHPGEDGTRLLVELADAQ--------AVESVLLPRDGLCVSTQVGCAVG 108
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L+R L + EI+ QV LAR L R++ +V MGM
Sbjct: 109 CVFCMTGKDGLLRQLDSGEIVAQVALARRL-------------------RRVHKVVFMGM 149
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246
GEP N D V +++ + + + + LST G + R+ + LA+SLH+
Sbjct: 150 GEPAHNLDAVIEAIELLGTE--GALPHKNLVLSTVGDLRVFERLPQMRVKPALALSLHST 207
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
LR L+P + L++ + S I +++ +++G+ND + ++++L
Sbjct: 208 RAALRAALLPRAPRIDPAELVELGEAWARAS-GYPIQYQWTLIEGVNDGEDELEGIVRLL 266
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
G A +N+IPFN G +Y + + + R+G + +R G D+ CGQL+
Sbjct: 267 AGKYAVMNMIPFNRVDGLDYRRPAAESAAEIARRLHRAGILTKLRQSAGQDVDGGCGQLR 326
Query: 367 SLSKRI 372
+ ++
Sbjct: 327 AREAKL 332
>gi|302877910|ref|YP_003846474.1| radical SAM domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302580699|gb|ADL54710.1| radical SAM domain protein [Gallionella capsiferriformans ES-2]
Length = 336
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 101/361 (27%), Positives = 164/361 (45%), Gaps = 40/361 (11%)
Query: 17 LEEALLKIGIPQRHVR--MRT-SQIWKWIYVRGIRDFQGMSDISQEVRHLL--NQHFSII 71
L L ++G H +R SQI Y R VR L +
Sbjct: 6 LIRRLRELGSKPCHEDRLLRGWSQIAS--YDRKNSPADNF--FPAAVRAELPAIEAELTG 61
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
++ E + +G + L+ +E+V +P RG LC+S+QVGC++ C FC
Sbjct: 62 LAKLHGEYPAGEGVARLLVEL-----ADGQMVESVLLP---RGGLCISTQVGCAVGCVFC 113
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
+G L+R L + EI+ QV+LAR R++S +V MGMGEP
Sbjct: 114 MSGRNGLIRQLGSAEIVAQVVLARRR-------------------REVSKVVFMGMGEPA 154
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDL 250
N DNV +++ + + + + ST G + R+ E LA+SLH L
Sbjct: 155 HNLDNVLEAIQLLGTQ--GNIGHKNLVFSTVGDLRVFERLPTETVKPALALSLHTTDAIL 212
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
R L+P +E L+ HY ++ + + +++ +++G+NDS + ++++L G
Sbjct: 213 RARLLPSAPVIAIEELVSLAEHYARIT-SYPVQYQWTLIEGVNDSDAELDGIVRLLAGKY 271
Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
A +N IPFN G +Y + I + +KR G IR G +I ACGQL++ +
Sbjct: 272 AVMNFIPFNEVDGLDYRRPSTERIAAMAYALKRQGVLVKIRDSAGQEIEGACGQLRARAI 331
Query: 371 R 371
R
Sbjct: 332 R 332
>gi|323453410|gb|EGB09282.1| hypothetical protein AURANDRAFT_12147 [Aureococcus anophagefferens]
Length = 316
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 100/332 (30%), Positives = 150/332 (45%), Gaps = 45/332 (13%)
Query: 60 VRHLLNQHFSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
+ + +FS ++V S T K ++ V + + SR T+CV
Sbjct: 3 FKEAVAANFSARSVDLVSRHDSSDGSTSKLVVGLRCGKKVETVVMRHGTLR-SSRVTVCV 61
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC++ CSFC TGT + +LT EI+ QVLLA+ V +
Sbjct: 62 SSQVGCAMRCSFCATGTMGMQGDLTRGEIVEQVLLAK------------------GVDGR 103
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
+ N+V MGMGEPL N+D V + D L+ R+T+ST G V I + +E
Sbjct: 104 LRNVVFMGMGEPLNNYDEVLGACRCLLDDRWLALGGGRVTISTVGVVDRIRSLAADEPRA 163
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEM--------LIDACRHYPGLSNARR-------- 281
LA+SLHA + D R ++P ++Y L+ + + R + +R
Sbjct: 164 NLALSLHAPTQDQRVAIMPAAKRYDLDDLLDALDAYVAEKLRELERRGSRKRRNDEKQPL 223
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKD 333
I EY++L G+NDS DA L K+ A +NLI +NP P Y
Sbjct: 224 IMVEYILLGGVNDSVADADALGKLFSRAGAAPRFGGRAMVNLIAYNPTPDLPYDRPSDAA 283
Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ F + ++ G + +R G D+ ACGQL
Sbjct: 284 VAAFQKAVQAHGVLTCVRITMGSDVAGACGQL 315
>gi|222624395|gb|EEE58527.1| hypothetical protein OsJ_09817 [Oryza sativa Japonica Group]
Length = 356
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 101/359 (28%), Positives = 157/359 (43%), Gaps = 49/359 (13%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
+ GI + + IWK++ D + + LL Q F +
Sbjct: 27 IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82
Query: 76 VDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120
S T K L+R +E V + +R TLCVSS
Sbjct: 83 TTAAESKDRTTTKLLIRLK-----NGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGC + C FC TGT NL++ EI+ Q++ A +I
Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRY-------------------SQIR 178
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
N+V MGMGEPL N+ + +++ + S S +RIT+ST G + +I + + + L
Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLIGSP-FQLSPKRITVSTVGIIHSINKFNNDLPNINL 237
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA D+R ++P R +PL L++A + Y S + I EY+ML G+ND + A
Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296
Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGL 356
L K+L+ A +NLIPFNP + S + ++ F + ++ + IR G
Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQ 355
>gi|82523823|emb|CAI78565.1| hypothetical protein [uncultured candidate division OP8 bacterium]
Length = 365
Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats.
Identities = 92/363 (25%), Positives = 162/363 (44%), Gaps = 27/363 (7%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
+ EL AL G+ R ++ + R + + ++S ++ + +
Sbjct: 25 FKDLTAAELHAALAPEGVSLRL----ARRLQAAVLKRDAF-PRTLPEVSDKMLARIREEV 79
Query: 69 SIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
+ + D+ +S K+L + V I ++ + C+SSQVGC+L
Sbjct: 80 RLPKLVLKDKAVSARDGFAKYLFQGDGPEPFEAVRIPLLHRSGDEKYIACLSSQVGCALG 139
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC TG VRNL+A E++ QV+ I V MGM
Sbjct: 140 CAFCATGRMGFVRNLSAWEMVDQVIRLS-----------------ADSEHPIRGAVFMGM 182
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246
GEP+ N++ V ++ I + GL+ S + +++ST+G VP I R + + L +SL +
Sbjct: 183 GEPMLNYEAVVRAARILCEPCGLAVSAKAVSISTAGVVPGIRRFTADRLPFRLVVSLTSA 242
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ R ++P+ + YPL L++A R Y S +R+ + M+ G N DA+ L ++
Sbjct: 243 DSARRREVMPLEQAYPLTDLMEAVREYHKSS-GQRVILAWTMISGFNTREEDAVQLAALV 301
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQL 365
+G+P +++LI N G + ++ F + + + R G DI AACG L
Sbjct: 302 RGLPIRLDLIDVNDATGR-FKPPSSLELHEFRDALSKHLKMPVARRYSGGKDIRAACGML 360
Query: 366 KSL 368
Sbjct: 361 AGR 363
>gi|162452171|ref|YP_001614538.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56']
gi|205829653|sp|A9EPV3|Y3898_SORC5 RecName: Full=Probable RNA methyltransferase sce3898
gi|161162753|emb|CAN94058.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56']
Length = 393
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 98/330 (29%), Positives = 144/330 (43%), Gaps = 39/330 (11%)
Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
I +V+ + S D K+ R V I R + CVSSQVGC+L
Sbjct: 51 EIRTLALVERRASAEDPFVKYAFRLEDGATVESVRIPLERP---GRYSACVSSQVGCALA 107
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C+FC TG L RNL A EI+ QV L R L G G ++ ++ GM
Sbjct: 108 CAFCATGRMGLTRNLEAWEIVEQVRLIRRDLDATVGG-----------GARVHGVLFQGM 156
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAV 246
GEPL N D V +++ + S+ + R IT+ T+G I R+ E+ V L +SL +V
Sbjct: 157 GEPLANADRVIQAIRVLSEPSAQAIDMRNITVCTAGLPSGIRRLAAEVPAVRLGLSLGSV 216
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
R +L+PI+ +PLE ++ A + S + Y +L ND+ DA L +
Sbjct: 217 RPGKRRLLMPIDGAHPLEEVLAAVGEHARAS-GHAPMWAYTLLADQNDTDEDAACLAALA 275
Query: 307 KGIPA------KINLIPFNPW--PGCEYLCSD--------------QKDIVTFSECIKRS 344
+G A +++LIP+N PG D + F + +
Sbjct: 276 RGFAAQHGISPRLSLIPYNAIGAPGDPLPSPDGGDERGASADPFVRSARLDAFRAVLSAA 335
Query: 345 GYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
G S +R G D+ AACGQL S +
Sbjct: 336 GVGSIVRYSGGGDVGAACGQLARPSAEAQR 365
>gi|220919464|ref|YP_002494768.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|219957318|gb|ACL67702.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 338
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 99/316 (31%), Positives = 146/316 (46%), Gaps = 30/316 (9%)
Query: 61 RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
R +L++ + +++ + DG RK+L P V I + +C
Sbjct: 45 RSVLDEVDALATPGELRLLEAVDARDGFRKYLFELPDGLRVETVRIPL----FDTHHVVC 100
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ GC+L C+FC T L R+L + E++ Q+L R R
Sbjct: 101 LSSQAGCALGCAFCATAKLGLDRSLRSWEMVAQLLAVR-----------------ADSER 143
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
I+ +V MG GEP N+D V + D G RRI++ST+G VP I R E
Sbjct: 144 PITGVVFMGQGEPFLNYDEVLTAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHK 203
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
L ISL+A R L+P+ + +PL+ L++A R + L R+T EYVM+ G+N
Sbjct: 204 FRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAAL--RGRVTLEYVMISGVNVGE 261
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPR 354
DA L ++L GIP ++N I N G Y D+ + F + + R G R
Sbjct: 262 EDAAALGQLLAGIPVRLNPIAVNDASGR-YCPPDEDEWNAFRDALARELPGTPVVRRYSG 320
Query: 355 GLDILAACGQLKSLSK 370
G D AACG L S +
Sbjct: 321 GQDEHAACGMLASRRR 336
>gi|319795747|ref|YP_004157387.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315598210|gb|ADU39276.1| Radical SAM domain protein [Variovorax paradoxus EPS]
Length = 356
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 96/366 (26%), Positives = 152/366 (41%), Gaps = 44/366 (12%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIY-----VRGIRDFQGMSDISQEVRHLLNQ 66
M EL+ L + G H + R ++W R F + L
Sbjct: 1 MRIHELKRRLREAGAGPSHEQ-RILRLWSHALPRDSGRRLPHSF-----FPSSLMEALPA 54
Query: 67 -HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I DG+ + L+ +E+V +P R LCVSSQVGC
Sbjct: 55 IEAELAGLARIHTVHPGADGSERLLVAL-----ADGQTVESVLLP---RDGLCVSSQVGC 106
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC TG L+R + + EI+ QV LAR RK+ +V
Sbjct: 107 AVGCQFCMTGRDGLLRQVGSAEIIAQVALAR-------------------TRRKVRKVVF 147
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
MGMGEP N DNV +++ + + + + ST G R+ +E LA+SL
Sbjct: 148 MGMGEPAHNLDNVMEAIELL--GTVGNIGHKNLVFSTVGDPRAFERLQQERVKPALALSL 205
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H LR L+P E L+DA Y + I +++ +L+G+ND + ++
Sbjct: 206 HTTKAGLRKTLLPRAPNMTPEELVDAGERYARAT-GYPIQYQWALLEGVNDGQDEIEGIV 264
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+L G +N+IPFN G + + + + + G + +R G D+ CG
Sbjct: 265 KLLSGKYGVLNMIPFNAVEGVAFSRPSWERCEAMARTLHQRGILTKLRDSAGQDVDGGCG 324
Query: 364 QLKSLS 369
QL++
Sbjct: 325 QLRARV 330
>gi|239820673|ref|YP_002947858.1| Radical SAM domain protein [Variovorax paradoxus S110]
gi|239805526|gb|ACS22592.1| Radical SAM domain protein [Variovorax paradoxus S110]
Length = 351
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 96/378 (25%), Positives = 157/378 (41%), Gaps = 44/378 (11%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIY-----VRGIRDFQGMSDISQEVRHLLNQ 66
M EL++ L + G H + R ++W R F + L
Sbjct: 1 MRIHELKQRLREAGAGPSHEQ-RILRLWSHALPRNSGRRLPESF-----FPSSLLAALPA 54
Query: 67 -HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I DG+ + L+ +E+V +P R LCVSSQVGC
Sbjct: 55 IEAELAGLARIHAVHPGADGSERLLVAL-----ADGQTVESVLLP---RDGLCVSSQVGC 106
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC TG L+R + + EI+ QV LAR + R + +V
Sbjct: 107 AVGCRFCMTGRDGLLRQVGSAEIIAQVALAR-------------------MRRPVRKVVF 147
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGMGEP N DNV +++ + + + + ST G R+ + + LA+SL
Sbjct: 148 MGMGEPAHNLDNVMEAIELL--GTVGNIGHKNLVFSTVGDPRAFERLQQARVRPALALSL 205
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H LR L+P E L+ A Y + I +++ +L G+ND P + ++
Sbjct: 206 HTTKAGLRKKLLPRAPNMTPEELVGAGERYARAT-GYPIQYQWTLLDGVNDGPEEIDGIV 264
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L G +N+IPFN G + + + + + G + +R G D+ CG
Sbjct: 265 RLLSGKFGVLNMIPFNAVEGVAFSRPSLERCEQMARTLHQRGILTKLRHSAGQDVDGGCG 324
Query: 364 QLKSLSKRIPKVPRQEMQ 381
QL++ + VP + Q
Sbjct: 325 QLRARAAEARVVPIRFAQ 342
>gi|209879529|ref|XP_002141205.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
gi|209556811|gb|EEA06856.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
Length = 529
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 100/450 (22%), Positives = 171/450 (38%), Gaps = 119/450 (26%)
Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
+ ++ + + H R +W+++ + +++F + DI + + + +F ++ IV
Sbjct: 22 KVFRELKVSESHA-YR---VWRYLIQKNVKEFSDIPDIPKRILEEIQLNFKLLTSNIVQS 77
Query: 79 KISCD-GTRKWLLRFPARCIGGPVEI--------------------ETVYIPEKSRGTLC 117
+ D T K ++R V + E +P R +LC
Sbjct: 78 HTTDDGNTTKLIIRLQDGHEIETVIMRYDRCNDVAKKSENKNLDTLEVPNLPIYRRVSLC 137
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VSSQ+GC + C+FC TGT L +L EI+ QV A ++L +
Sbjct: 138 VSSQIGCRIGCTFCATGTLGLGGSLVTGEIIEQVYHAINILNE----------------- 180
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
+ N+V MGMGEPL N++ V ++ I D+ S +I++ST G I + ++ G
Sbjct: 181 PVKNVVFMGMGEPLENYNEVVDAIKILLDTRLYGLSPSKISISTVGIPSGIVNMADDLPG 240
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS------------------- 277
V L +SLHA LR +VPI + Y + LI + + S
Sbjct: 241 VGLCLSLHAPDQVLREQIVPIAKMYKISELIRSTDIFIAKSILNKFIKKITDQRNNRTEI 300
Query: 278 ----------------NARRITFEYVMLKGINDSPRDALNLIKIL--------------- 306
+ + EY+++K +NDS A L +L
Sbjct: 301 KIDNLESTIISPKWFNSHSTVMIEYILIKDVNDSINHAKALANLLNNTYTDKNDINMIFE 360
Query: 307 KGIPA-------------------------KINLIPFNPWPGCE-YLCSDQKDIVTFSEC 340
+ I + +N++P++ Y + + TF
Sbjct: 361 RCIQSERLEKKVAKSFQKAFLDNYKRSNFIFVNILPYSETNATPKYATPSEGKVRTFCRI 420
Query: 341 IKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
+ G +R G DI ACGQL K
Sbjct: 421 LNNYGIVVTVRRKMGQDIGGACGQLAFKGK 450
>gi|197124743|ref|YP_002136694.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
sp. K]
gi|196174592|gb|ACG75565.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
Length = 338
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 99/316 (31%), Positives = 146/316 (46%), Gaps = 30/316 (9%)
Query: 61 RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
R +L++ + +++ + DG RK+L P V I + +C
Sbjct: 45 RSVLDEVDALATPGELRLLEAVDARDGFRKYLFELPDGLRVETVRIPL----FDTHHVVC 100
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+SSQ GC+L C+FC T L R+L + E++ Q+L R R
Sbjct: 101 LSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSER 143
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
I+ +V MG GEP N+D V + D G RRI++ST+G VP I R E
Sbjct: 144 PITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHK 203
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
L ISL+A R L+P+ + +PL+ L++A R + L R+T EYVM+ G+N
Sbjct: 204 FRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAAL--RGRVTLEYVMISGVNVGE 261
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPR 354
DA L ++L GIP ++N I N G Y D+ + F + + R G R
Sbjct: 262 EDAAALGQLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPIVRRYSG 320
Query: 355 GLDILAACGQLKSLSK 370
G D AACG L S +
Sbjct: 321 GQDEHAACGMLASRRR 336
>gi|332527662|ref|ZP_08403707.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
benzoatilyticus JA2]
gi|332112064|gb|EGJ12040.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
benzoatilyticus JA2]
Length = 351
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 94/362 (25%), Positives = 149/362 (41%), Gaps = 44/362 (12%)
Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVR-------GIRDFQGMSDISQEVRHLLNQH 67
EL + L +G H + W+ R F + + L
Sbjct: 14 AELRQRLRALGAGPGHEE---RLLRNWVQCRAPTAGRGQAEHFY-----PRALYEALPAL 65
Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
F + S R G +E+V +P R LCVS+QVGC++
Sbjct: 66 F--DSLAALATLRSAHPGEDGAERLLVGL-GDGQTVESVLLP---RDGLCVSTQVGCAVG 119
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC TG L+R L + EI+ QV+LAR R +S +V MGM
Sbjct: 120 CVFCMTGRDGLLRQLGSAEIVAQVVLARQR-------------------RSVSKVVFMGM 160
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246
GEP N D V +++ + + G+ + + ST G R+ + LA+SLH
Sbjct: 161 GEPSHNLDAVLEAIDLLGTAGGIG--HKNLVFSTVGDTRAFERLPLGRVKPALALSLHTT 218
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+LR L+P K E +++A Y + I +++ +L GIND + + ++L
Sbjct: 219 KAELRERLLPRAPKIAPEEIVEAGERYARAT-GYPIQYQWTLLDGINDGDDEVDAIARLL 277
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
G A +NLIP+N G + + + + R G + +R G D+ CGQL+
Sbjct: 278 AGRYAMMNLIPYNETEGDGFRRPPWERAAEMARALGRRGVLTRLRRSAGQDVAGGCGQLR 337
Query: 367 SL 368
+
Sbjct: 338 AR 339
>gi|330503480|ref|YP_004380349.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
mendocina NK-01]
gi|328917766|gb|AEB58597.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
mendocina NK-01]
Length = 346
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 101/380 (26%), Positives = 163/380 (42%), Gaps = 54/380 (14%)
Query: 12 MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYVR---------GIRDFQGMSDISQEV 60
M EL L +G +H+ R W+ + +F + V
Sbjct: 1 MQLSELNHRLAALGAKPQHIGRITRA-----WLQGKALDTGTKHQKTENF-----LPLTV 50
Query: 61 RHLLNQH-FSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
R L S+ + E DG+ + L+ R V R LC+
Sbjct: 51 REGLPAISASLEQLARVSTEHPGADGSSRLLVELADRQ--------MVESVLLPRDGLCI 102
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
SSQVGC++ C+FC TG L+R L++ E++ QV+L R R
Sbjct: 103 SSQVGCAVGCTFCMTGKSGLLRQLSSAEMVAQVVLGRRR-------------------RA 143
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
+ +V MGMGEP N DNV +++ + G+ R + ST G R+ + +
Sbjct: 144 VKKVVFMGMGEPAHNLDNVLEAIDLLGTEGGIG--HRNLVFSTVGDPRVFERLPRQRVRP 201
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLH +LR L+P + E L++ Y + I +++ +LKGINDS +
Sbjct: 202 ALALSLHTTDAELRQRLLPRAPRIDPEQLMELGEAYARAID-YPIQYQWTLLKGINDSQQ 260
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
+ N++++ KG A +NLIP+N EY + + IV + G + +R G D
Sbjct: 261 EMDNILRLFKGKFAVLNLIPYNSLEADEYRRPEGERIVEMVRYLHSRGVLTKVRNSAGQD 320
Query: 358 ILAACGQLKSLSKRIPKVPR 377
+ CGQL++ + + R
Sbjct: 321 VDGGCGQLRARAVDVINTSR 340
>gi|124268797|ref|YP_001022801.1| ribosomal RNA large subunit methyltransferase N [Methylibium
petroleiphilum PM1]
gi|205829646|sp|A2SLX7|Y3613_METPP RecName: Full=Probable RNA methyltransferase Mpe_A3613
gi|124261572|gb|ABM96566.1| Fe-S-cluster redox enzyme,radical SAM family [Methylibium
petroleiphilum PM1]
Length = 352
Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats.
Identities = 93/365 (25%), Positives = 158/365 (43%), Gaps = 45/365 (12%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQ--IWKW---IYVRGIRDFQGMSDISQEVRHLLNQ 66
M E+L E L +G H Q + W + + + + +R L
Sbjct: 1 MRIEQLREHLRALGARPGHE-----QSVLRHWACALPQQRRSARED--VLPLALREALPA 53
Query: 67 -HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ + E + DG+ + L+ +E+V +P R LCVS+QVGC
Sbjct: 54 LEAELQGLARLRSEHSAEDGSARLLVAL-----ADGQTVESVLLP---RDGLCVSTQVGC 105
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
++ C FC TG L+R L + EI+ QV LAR R + +V
Sbjct: 106 AVGCVFCMTGQGGLLRQLGSAEIVAQVALARGH-------------------RAVKKVVF 146
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEP N DNV +++ + + G+ + + ST G R+ + + LA+SL
Sbjct: 147 MGMGEPAHNLDNVLEAIELLGTAGGIG--HKNLVFSTVGDERVFERLPQGAVKPALALSL 204
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
H +LR L+P + E L+ Y + + +++ ++ G+ND + ++
Sbjct: 205 HTTKPELRAQLLPRAPRIAPEDLVAHGERYARAT-GYPVQYQWTLIDGVNDGDDELDGIV 263
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++L G A +NLIP+N G + + V + + R G + +R G D+ CG
Sbjct: 264 RLLAGRYAVMNLIPYNTVDGLAFQRPAWERAVAMAGALHRRGVLTKLRRSAGQDVEGGCG 323
Query: 364 QLKSL 368
QL++
Sbjct: 324 QLRAR 328
>gi|325114363|emb|CBZ49920.1| radical SAM enzyme, Cfr family, related [Neospora caninum
Liverpool]
Length = 512
Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 85/293 (29%), Positives = 129/293 (44%), Gaps = 36/293 (12%)
Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A +
Sbjct: 84 FKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV---------- 133
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
KI NIV MGMGEPL N++NV S+ + + + +ST G
Sbjct: 134 ---------EKIRNIVFMGMGEPLDNYNNVVASVRFMTQPNKFAIGGHHVCISTVGLPHR 184
Query: 228 IARVGEE-IGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARR---- 281
I ++ + LA+SLHA R L+P + L+ ++DA +
Sbjct: 185 IRQLASDLPTCRLALSLHAPDQPTRLKLMPRAAAGWKLDRVLDATDEFVKQQKRVNSTAM 244
Query: 282 ----ITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWP-GCEYLCSDQKDI 334
+ EY+M++ +ND+ A L +IL+ +NLIP+NP +Y S + +
Sbjct: 245 KNIGLLVEYIMIQDVNDTIDQAHALGRILQPRADAVIVNLIPYNPTEVPYDYKPSTPERV 304
Query: 335 VTFSECIK-RSGYSSPIRTPRGLDILAACGQL---KSLSKRIPKVPRQEMQIT 383
F ++ +R G DI +ACGQL K KVP + + +
Sbjct: 305 DEFLRILRQDYSIKVLVRQTLGQDIDSACGQLVVRAGKDKSGEKVPERVARAS 357
>gi|23004907|ref|ZP_00047999.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
magnetotacticum MS-1]
Length = 232
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 94/242 (38%), Positives = 129/242 (53%), Gaps = 16/242 (6%)
Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
R TLCVSSQ GC + C FC TG L RNL+ EI+ QV A L D
Sbjct: 1 YPQRSTLCVSSQAGCGMACPFCATGQLGLTRNLSVAEIVEQVRSAARSLAD--------- 51
Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPN 227
IP +++N+V MGMGEPL N+ V ++ A GL S R IT+ST G VP
Sbjct: 52 GEIPGGPARLNNLVFMGMGEPLANYKAVMGTVRRLVAPAPDGLGMSARNITVSTVGLVPA 111
Query: 228 IARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
+ ++ +E I V LA+SLHA +DLR+ LVPIN ++ ++ +DA RHY ++ RR++ EY
Sbjct: 112 MRKLADEGIPVTLALSLHAPDDDLRSELVPINTRWSVDETLDAARHYFEVT-GRRVSIEY 170
Query: 287 VMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
++K +ND A L + L +N IP NP PG + SD F ++
Sbjct: 171 ALIKDMNDHAWRADLLGEKLNARGRGWVHVNPIPLNPTPGSIWTGSDPAVEAEFVARLRG 230
Query: 344 SG 345
G
Sbjct: 231 HG 232
>gi|187478042|ref|YP_786066.1| ribosomal RNA large subunit methyltransferase N [Bordetella avium
197N]
gi|123752381|sp|Q2L1Z5|Y1540_BORA1 RecName: Full=Probable RNA methyltransferase BAV1540
gi|115422628|emb|CAJ49153.1| radical SAM protein [Bordetella avium 197N]
Length = 351
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 32/315 (10%)
Query: 56 ISQEVRHLLNQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
+ +R L + V + + + L+ +E+V +P R
Sbjct: 46 LPLALREALPALTAELDGLARVHSEHAGSDGSRLLVAL-----ADGQMVESVLLP---RD 97
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
LCVS+QVGC++ C FC TG L+R +T+ EIL QV+LAR
Sbjct: 98 GLCVSTQVGCAVGCRFCMTGKSGLIRQVTSMEILAQVVLARRR----------------- 140
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GE 233
R + +V MGMGEP N +NV +++++ + + + ST G + +
Sbjct: 141 --RAVKKVVFMGMGEPAHNLENVLEAINLLGTE--GNIGHKNLVFSTVGDRRVFEALPQQ 196
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ LA+SLH +LR L+P + L++ Y I +++ +LKG+N
Sbjct: 197 RVKPALALSLHTTKAELRARLLPRAPSIAPDELVELGERYAR-HIGYPIQYQWTLLKGVN 255
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D + ++++LKG +N+IPFN G +Y D + I + G +R
Sbjct: 256 DGNDELDAVLRLLKGKYGVLNVIPFNSLEGDDYQRPDLERIREIVRYVHSRGVLVKVRNS 315
Query: 354 RGLDILAACGQLKSL 368
G D+ CGQL++
Sbjct: 316 AGQDVDGGCGQLRAR 330
>gi|66357070|ref|XP_625713.1| conserved protein with transmembrane region at C-terminus
[Cryptosporidium parvum Iowa II]
gi|46226740|gb|EAK87719.1| conserved protein with transmembrane region at C-terminus
[Cryptosporidium parvum Iowa II]
Length = 602
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 113/494 (22%), Positives = 180/494 (36%), Gaps = 154/494 (31%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+KK S+ + L +AL G+ + H IW+ I +GI++ + DI + +
Sbjct: 12 IKKHSIFD--YKSLTKALDDAGVKRIH----AYTIWRNIVQKGIKNMSEIKDIPKAAYKI 65
Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPE------------ 110
+N+ FSI+ ++++ + S T K + R EIE V +
Sbjct: 66 INEQFSILNIQLINSQTSKDGNTTKIIFRLQDS-----HEIEAVIMRYGDDQVNENTNIC 120
Query: 111 ---------------------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
R ++CVSSQ+GC + C FC TG+ L +L + EIL
Sbjct: 121 NSNSNNKNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEILQ 180
Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
Q+ +++L + + N+V MGMGEPL N+D V S+ + D
Sbjct: 181 QLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDPRI 223
Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
S S I +ST G NI + ++ GV L +SLHA + LR ++PI R Y + L+
Sbjct: 224 FSLSSGHILVSTVGIPSNIINLADDLPGVGLCLSLHAPNQSLRERIIPIARLYKISDLMR 283
Query: 269 ACRHYPGLS-----------------------------------NARRITFEYVMLKGIN 293
+ + + + I EY MLK +N
Sbjct: 284 SLDIFIFKTIINKCYKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKDVN 343
Query: 294 DSPRDALNLIKILKGIP-----------------------------------AKI----- 313
DS A+ L +LK P + I
Sbjct: 344 DSEDHAVELANLLKNTPISKNIIEEIIDNRDDSVKMNINYMSDNKIINKNFKSHIASTIF 403
Query: 314 ---------------NLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
NLIP+N + ++ I F++ + +R G
Sbjct: 404 KELSKDFNRTNFAIVNLIPYNKTNTSTRFSTPSKEIITKFAKVLIDLNIFVTVRRKMGDG 463
Query: 358 ILAACGQLKSLSKR 371
I ACGQL +
Sbjct: 464 IFGACGQLALKQAK 477
>gi|307826514|ref|ZP_07656687.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
gi|307732443|gb|EFO03343.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
Length = 271
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 107/282 (37%), Positives = 138/282 (48%), Gaps = 49/282 (17%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ CSFC+TG Q L RNLT EI+ Q L A L E +I NIV M
Sbjct: 1 MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFM 49
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
G GEPL NFD VKK+ I G S +RIT+ST+G++P + R +EI V LA+SLH
Sbjct: 50 GQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSLH 109
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--------------------------- 277
+ + RN L+PIN KYPL+ ++ P
Sbjct: 110 SPFEEKRNELIPINIKYPLDEVLATIDKIPLNKKQFITYEYILIKDFNDTPDDAXXXXEV 169
Query: 278 ----------NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
+ IT+EY+++K NDSP DA L IL G A INLIPFN +PG Y
Sbjct: 170 LATIDKIPLNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFNSFPGSHYK 229
Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
D I F E + + IR+ +G D+LAACGQL S +
Sbjct: 230 RPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNSKN 271
>gi|320104471|ref|YP_004180062.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC
43644]
gi|319751753|gb|ADV63513.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644]
Length = 373
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 99/317 (31%), Positives = 146/317 (46%), Gaps = 24/317 (7%)
Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115
+ + L+Q + ++ ++S ++ G PVE + + +++ +
Sbjct: 69 FPRRLLEGLDQ---LPRLKLESIQVSPR--DRFEKLLFRTNDGLPVETVLIPLHKENAVS 123
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVSSQ GC + C+FC T RNL A EI+ Q+L AR +
Sbjct: 124 LCVSSQSGCPMACAFCATARLSRRRNLAAWEIVDQILQAR--------------ARVELQ 169
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
GR+++ V MGMGEP N+D V + I +GL+ + + IT+ST G V I R E
Sbjct: 170 GRRVTGCVFMGMGEPFLNYDRVMTAAEILRSPIGLAVNAKAITISTVGLVAEIDRFTREQ 229
Query: 236 -GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L+ISL A + R LVP+ + PL LI A R + RI YV + +N
Sbjct: 230 RPYRLSISLGAADDATRAQLVPVAARTPLRELIAAARRH-QHQRGGRINLSYVCIANLNT 288
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRT 352
S DA NL ++L+G+P + NLI P + TF + ++R G R
Sbjct: 289 SETDARNLGRLLEGLPVRFNLIDVTD-PTGRFHPPSPAQWNTFRDALRRHLPGQPIVRRY 347
Query: 353 PRGLDILAACGQLKSLS 369
G DI AACG L S
Sbjct: 348 SGGADIQAACGTLAGTS 364
>gi|74317969|ref|YP_315709.1| ribosomal RNA large subunit methyltransferase N [Thiobacillus
denitrificans ATCC 25259]
gi|123759042|sp|Q3SHI2|Y1951_THIDA RecName: Full=Probable RNA methyltransferase Tbd_1951
gi|74057464|gb|AAZ97904.1| Fe-S-cluster redox enzyme, radical SAM family [Thiobacillus
denitrificans ATCC 25259]
Length = 362
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 94/367 (25%), Positives = 153/367 (41%), Gaps = 48/367 (13%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWI-------YVRGIRDFQGMSDISQEVRHLL 64
M EL + L G H + W+ + DF + +R+ L
Sbjct: 1 MRLPELRQRLRDHGAAPCHA---GRVLRAWVAGRPLDNRRQRAEDF-----LPLRLRNAL 52
Query: 65 NQHFS--IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
F ++ E DG+ + L+R +E+V +P R +CVS+QV
Sbjct: 53 PGLFDELRNLAQVHSEHPGEDGSARLLVRL-----ADGQTVESVLLP---RDGVCVSTQV 104
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C FC TG L+R L+ EI+ QV+LARS R + +
Sbjct: 105 GCAVGCVFCMTGRAGLLRQLSGAEIVAQVVLARSR-------------------RPVRKV 145
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
V MGMGEP N DNV ++ + G+ + + ST G R+ + A+
Sbjct: 146 VFMGMGEPAHNLDNVLDAIELLGLEGGIG--HKNLVFSTVGDRRVFERLPQSTVKPARAL 203
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH LR L+P + L++ Y + I +++ +L+GIND+ +
Sbjct: 204 SLHTTDRALRRRLLPRAPDIAPQELVELGEAYARRT-GYPIQYQWTLLEGINDTEAELEG 262
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+ ++L G A +NLIP+N + + + R G + +R G D+
Sbjct: 263 IARLLAGRYAVMNLIPYNATEADGFNRPSWARAAEMARRLHRRGVLAKLRHSAGQDVDGG 322
Query: 362 CGQLKSL 368
CGQL++
Sbjct: 323 CGQLRAR 329
>gi|311106735|ref|YP_003979588.1| methyltransferase [Achromobacter xylosoxidans A8]
gi|310761424|gb|ADP16873.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans A8]
Length = 351
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 86/336 (25%), Positives = 150/336 (44%), Gaps = 38/336 (11%)
Query: 56 ISQEVRHLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
+ +R + + V + + + + L+ +E+V +P R
Sbjct: 46 LPLALRDAVPVLTAELDALARVRSEHAGNDGSRLLVEL-----ADGQMVESVLLP---RD 97
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
LCVS+QVGC++ C FC TG L+R +T+ EIL QV+LAR
Sbjct: 98 GLCVSTQVGCAVGCRFCMTGKSGLIRQVTSMEILAQVVLARR------------------ 139
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GE 233
R + +V MGMGEP N DNV +++ + + + + ST G + + +
Sbjct: 140 -QRAVKKVVFMGMGEPAHNLDNVLEAIDLLGTE--GNIGHKNLVFSTVGDLRVFEALPQQ 196
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ LA+SLH +LR L+P + E LI+ Y ++ I +++ +LK IN
Sbjct: 197 RVKPALALSLHTTKAELRAHLLPRAPRIAPEELIELGERYARDTD-YPIQYQWTLLKDIN 255
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
D + ++++LKG +N+IPFN G +Y D + I ++ G + +R
Sbjct: 256 DGDDELDAVVRLLKGKYGVLNVIPFNSLEGDDYQRPDTERIHEIVRSLQSRGVLTKVRNS 315
Query: 354 RGLDILAACGQLKSL------SKRIPKVPRQEMQIT 383
G D+ CGQL++ + + +++ T
Sbjct: 316 AGQDVDGGCGQLRARAVGAAQVVELRRTRIAKLEAT 351
>gi|156089225|ref|XP_001612019.1| radical SAM domain containing protein [Babesia bovis]
gi|154799273|gb|EDO08451.1| radical SAM domain containing protein [Babesia bovis]
Length = 336
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 99/337 (29%), Positives = 157/337 (46%), Gaps = 38/337 (11%)
Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD 83
R SQI + +Y ++ M I + VR L+ HF S++ + S
Sbjct: 20 QRSNAAGYRLSQILRSVYSAKSSNYLEMYHIPKHVREELHDHFGGSLLSLKPTTSTKSDR 79
Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
K L + +E V + + +LC+SSQVGC+ C+FC TG L RNL+
Sbjct: 80 AC-KVLFENRDKSK-----VEAVLLSFPTHKSLCISSQVGCAYACAFCATGRIGLKRNLS 133
Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
+EI QVL R G +I +I MGMGEPL N NV ++++I
Sbjct: 134 VDEITDQVLYFRQ------------------NGHQIDSISFMGMGEPLSNP-NVFRAINI 174
Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYP 262
SD+ + S RR+ +ST G +P + ++ + V LA S+H+ D RN LVP+N+ YP
Sbjct: 175 LSDNDLFAMSSRRLNISTVGILPGLKKLNRDHPHVNLAFSMHSPFTDQRNKLVPVNQLYP 234
Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AKINLI 316
+ + L+ RI Y+++KG ND+ A L+K++ P +NLI
Sbjct: 235 FRDVFELLDERIRLTGK-RIWISYILIKGENDTREHAEELVKVISNRPDEIRYLYHVNLI 293
Query: 317 PFNPWPGC-EYLCSDQKDIVTFS--ECIKRSGYSSPI 350
P+N ++ ++ I TF + + R+ +
Sbjct: 294 PYNTVKSICKFERTEDNVIDTFKITKQLTRAHCLVGV 330
>gi|153007216|ref|YP_001381541.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
sp. Fw109-5]
gi|205829649|sp|A7HIL1|Y4379_ANADF RecName: Full=Probable RNA methyltransferase Anae109_4379
gi|152030789|gb|ABS28557.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 336
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 103/314 (32%), Positives = 147/314 (46%), Gaps = 26/314 (8%)
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVS 119
R +L++ ++ P + K R +G +E V IP + T+C+S
Sbjct: 45 RAVLDRVEALATPGELRRV--ACTDAKDGFRRYLLELGDGARVEAVRIPLFDTHHTVCLS 102
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQ GC+L CSFC TG L R+L A EI+ Q+L R R I
Sbjct: 103 SQAGCALGCSFCATGALGLARSLRAWEIVAQLLHVR-----------------ADSTRPI 145
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
+ +V MG GEP N+D V ++ D G RRI++ST+G VP I R E
Sbjct: 146 TGVVFMGQGEPFLNYDAVLEAAYTLCDPAGGRIDGRRISISTAGVVPMIRRYTAEGHKFR 205
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
L +SL+A R L+PI +PL+ L+DA R + R+T EYVM+ G+N D
Sbjct: 206 LCVSLNAAIPWKRRALMPIEEGFPLDELVDAVREHAAQ--RGRVTLEYVMIAGVNTGDED 263
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPRGL 356
A L ++L GIP ++N I N G + D+ + F + + R G R G
Sbjct: 264 AAALGRLLAGIPVRLNPIAVNDATGR-HRPPDEAEWNAFRDALARELPGQPIVRRYSGGQ 322
Query: 357 DILAACGQLKSLSK 370
D AACG L S ++
Sbjct: 323 DEHAACGMLSSRTR 336
>gi|255632735|gb|ACU16719.1| unknown [Glycine max]
Length = 245
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 24/243 (9%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TG+ NL++ EI+ Q++ A S +I N+V M
Sbjct: 1 MGCNFCATGSMGFKNNLSSGEIVEQLVHA-------------------STFSQIRNVVFM 41
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GMGEPL N+ V +++ I + + S +RIT+ST G + I ++ ++ G+ LA+SLH
Sbjct: 42 GMGEPLNNYSAVVEAVRIMT-GLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLH 100
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + D+R ++P R +PL L+D+ + Y S ++I EY+ML G+ND A L K
Sbjct: 101 APAQDIRCQIMPAARAFPLGKLMDSLQVYQRKSL-QKIFIEYIMLDGVNDEEHHAHLLGK 159
Query: 305 ILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAAC 362
+L+ +NLIPFN ++ + ++ + F + ++ + +R G DI AC
Sbjct: 160 LLETFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGRDISGAC 219
Query: 363 GQL 365
GQL
Sbjct: 220 GQL 222
>gi|67592602|ref|XP_665654.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656439|gb|EAL35423.1| hypothetical protein Chro.40137 [Cryptosporidium hominis]
Length = 600
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 115/490 (23%), Positives = 179/490 (36%), Gaps = 155/490 (31%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+KK S+ + L +AL G+ + H IW+ I +GI+D + DI + +
Sbjct: 9 IKKHSIFD--YKSLTKALDDAGVKRIH----AYTIWRNIVQKGIKDMSEIKDIPKAAYKI 62
Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPE------------ 110
+N+ FSI+ ++++ + S T K + R EIE V +
Sbjct: 63 INEQFSILNIQLINSQTSKDGNTTKIIFRLQDS-----HEIEAVIMRYGDDQVNENTNIC 117
Query: 111 ---------------------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
R ++CVSSQ+GC + C FC TG+ L +L + EIL
Sbjct: 118 NSNSNNNNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEILQ 177
Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
Q+ +++L + + N+V MGMGEPL N+D V S+ + D
Sbjct: 178 QLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDPRI 220
Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
S S I +ST G NI + ++ GV L +SLHA + LR +VPI R Y + L+
Sbjct: 221 FSLSSGHILVSTVGIPSNIVNLADDLPGVGLCLSLHAPNQSLRERIVPIARLYKISDLMR 280
Query: 269 ACRHYPGLS-----------------------------------NARRITFEYVMLKGIN 293
+ + + + I EY MLK +N
Sbjct: 281 SLDIFIFKTIINKCYKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKDVN 340
Query: 294 DSPRDALNLIKILKGIP----------------AKIN----------------------- 314
DS A+ L +LK P K+N
Sbjct: 341 DSEDHAVELANLLKNTPISKNIIEEIIDNRDDSVKMNINNYMSDNKIINKNLKSHIASTI 400
Query: 315 -----------------LIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
LIP+N + ++ I F++ + +R G
Sbjct: 401 FKELSKDFNRTNFAIVNLIPYNKTNTSTRFSTPSKEIITKFAKVLIDLNIFVTVRRKMGD 460
Query: 357 DILAACGQLK 366
I ACGQL
Sbjct: 461 GIFGACGQLA 470
>gi|325849079|ref|ZP_08170571.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480324|gb|EGC83387.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 223
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 20/239 (8%)
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
L R+L+A EI+ ++ L D ISNIV+MG+GEPL N
Sbjct: 4 QKNGLERSLSAAEIIEEIYLLERENSD------------------ISNIVVMGIGEPLDN 45
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
F N++K + I +D G + S R IT+ST G V I + + LA+SLH ++ R
Sbjct: 46 FSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDINLAVSLHYAFDEKRM 105
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
+P +KY ++ +I AC +Y + R+++EYV++ G+N+ D L + KG
Sbjct: 106 AYMPSGKKYKIKDIIKACDYYLEKTKR-RVSYEYVVIDGVNNLREDIDQLENLFKGKNIH 164
Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
INLIP NP +Y + + F + + + G ++ IR G DI A+CGQL++ R
Sbjct: 165 INLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMGSDIDASCGQLRNNYAR 223
>gi|205829718|sp|Q5P119|Y2870_AZOSE RecName: Full=Probable RNA methyltransferase AZOSEA28700
Length = 354
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 78/273 (28%), Positives = 128/273 (46%), Gaps = 26/273 (9%)
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+E+V +P R LCVS+QVGC++ C+FC TG L+R L + EI+ QV+LARS
Sbjct: 82 ADGQTVESVLLP---RDGLCVSTQVGCAVGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR 138
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
R + +V MGMGEP N DNV +++++ G+ + +
Sbjct: 139 -------------------RAVRKVVFMGMGEPAHNLDNVLEAIALLGTEGGIG--HKNL 177
Query: 218 TLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
ST G R+ + LA+SLH LR L+P + L++ Y
Sbjct: 178 VFSTVGDRRVFERLPQGSVKPALALSLHTTRPALRTKLMPRAPRLDPAELVELGETYARA 237
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
+ I +++ +L G+ND + ++++L G A +N IP+N G + +
Sbjct: 238 T-GYPIQYQWTLLAGVNDDDEELDGIVRLLAGKYAVMNFIPYNSVAGAGFARPSWEHAAA 296
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+ + R G + +R G D+ CGQL++
Sbjct: 297 MARYLHRRGILTKLRHSAGQDVDGGCGQLRARV 329
>gi|146319331|ref|YP_001199043.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33]
gi|145690137|gb|ABP90643.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33]
Length = 208
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 112/210 (53%), Gaps = 21/210 (10%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + L + +L+ G + R +QIW+W+Y ++ F M+++ + + L
Sbjct: 2 KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+HF + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 EHFVVNPLKQRIVQESKDGTIKYLFELP-----DGMLIETVLMHQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G R+LT+ EI+ Q++L + L + + ++S+IV+M
Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
G+GEPL N+DNV L + +D GL+ R
Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGAR 190
>gi|95007443|emb|CAJ20664.1| hypothetical protein, conserved [Toxoplasma gondii RH]
Length = 641
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 33/281 (11%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A +
Sbjct: 230 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 280
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
I NIV MGMGEPL N+++V S+ + + R+ +ST G
Sbjct: 281 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 330
Query: 227 NIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARR--- 281
I ++ + LA+SLHA R L+P + LE +++A +
Sbjct: 331 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 390
Query: 282 -----ITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWP-GCEYLCSDQKD 333
+ EY+M++ +ND+ A L +IL+ +NLIP+NP +Y S Q+
Sbjct: 391 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 450
Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
+ F +++ +R G DI +ACGQL + +
Sbjct: 451 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQEE 491
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 44 VRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCI 97
+ ++DF+ + D+ + + L ++F + ++ K S T K LL FP
Sbjct: 100 QKNVQDFREIPDLPRRLYATLAENFCLHASRVLQTKTSRDRSTTKLLLEFPDGSQ 154
>gi|221482944|gb|EEE21275.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 482
Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 33/281 (11%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A +
Sbjct: 71 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 121
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
I NIV MGMGEPL N+++V S+ + + R+ +ST G
Sbjct: 122 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 171
Query: 227 NIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARR--- 281
I ++ + LA+SLHA R L+P + LE +++A +
Sbjct: 172 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 231
Query: 282 -----ITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWP-GCEYLCSDQKD 333
+ EY+M++ +ND+ A L +IL+ +NLIP+NP +Y S Q+
Sbjct: 232 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 291
Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
+ F +++ +R G DI +ACGQL + +
Sbjct: 292 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQEE 332
>gi|289759001|ref|ZP_06518379.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
tuberculosis T85]
gi|289714565|gb|EFD78577.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
tuberculosis T85]
Length = 275
Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 83/277 (29%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + A+ ++G+P R Q+ Y R I D + M+D+ VR +
Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ G + L E+V + R T+C+SSQ GC +
Sbjct: 73 AMFPNLLTASADITCDAGQTRKTL----WRAVDGTMFESVLMRYPRRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SL
Sbjct: 176 MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
HA + LR+ LVP+N ++ + +DA R+Y ++ R
Sbjct: 236 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGRR 272
>gi|237840861|ref|XP_002369728.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211967392|gb|EEB02588.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
Length = 619
Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 33/281 (11%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A +
Sbjct: 208 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 258
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
I NIV MGMGEPL N+++V S+ + + R+ +ST G
Sbjct: 259 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 308
Query: 227 NIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARR--- 281
I ++ + LA+SLHA R L+P + LE +++A +
Sbjct: 309 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 368
Query: 282 -----ITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWP-GCEYLCSDQKD 333
+ EY+M++ +ND+ A L +IL+ +NLIP+NP +Y S Q+
Sbjct: 369 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 428
Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
+ F +++ +R G DI +ACGQL + +
Sbjct: 429 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQEE 469
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRF 92
+IW+++ + ++DF+ + D+ + + L ++F + ++ K S T K LL F
Sbjct: 59 HAQKIWRYVVQKNVQDFREIPDLPRRLYATLAENFCLHASRVLRTKTSRDRSTTKLLLEF 118
Query: 93 PARCI 97
P
Sbjct: 119 PDGSQ 123
>gi|289754992|ref|ZP_06514370.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
tuberculosis EAS054]
gi|289695579|gb|EFD63008.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
tuberculosis EAS054]
Length = 275
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 83/277 (29%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + A+ ++G+P R Q+ Y R I D + M+D+ VR +
Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ G + L E+V + R T+C+SSQ GC +
Sbjct: 73 AMFPNLLTASADITCDAGQTRKTL----WRAVDGTMFESVLMRYSRRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMG 175
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SL
Sbjct: 176 MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 235
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
HA + LR+ LVP+N ++ + +DA R+Y ++ R
Sbjct: 236 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGRR 272
>gi|171059188|ref|YP_001791537.1| ribosomal RNA large subunit methyltransferase N [Leptothrix
cholodnii SP-6]
gi|205829631|sp|B1Y6D6|Y2507_LEPCP RecName: Full=Probable RNA methyltransferase Lcho_2507
gi|170776633|gb|ACB34772.1| Radical SAM domain protein [Leptothrix cholodnii SP-6]
Length = 347
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 26/282 (9%)
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+E+V +P R LCVS+QVGC++ C FC TG + L+R + + EI+ QV+LAR
Sbjct: 83 ADGQTVESVLLP---RDGLCVSTQVGCAVGCVFCMTGREGLLRQVGSAEIVAQVVLARR- 138
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
R + +V MGMGEP N DNV +++ + + + +
Sbjct: 139 ------------------QRLVKKVVFMGMGEPAHNLDNVMEAIDFLGTT--GAIGHKNL 178
Query: 218 TLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
ST G R+ + LA+SLH DLR L+P + L++ Y
Sbjct: 179 VFSTVGDPRVFERLPLGPVKPALALSLHTTRADLRAQLLPRAPRMDPADLVERAEAYARA 238
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
+ + I +++ +L+GIND P + ++++L G A +N+IP+N P Y +
Sbjct: 239 T-SYPIQYQWTLLEGINDGPDEVEGIVRLLHGKYAVLNMIPYNTVPDLPYTRPSWEAAAA 297
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
+ + R G + +R G D+ CGQL++ +
Sbjct: 298 LARTLHRRGILTKLRQSAGQDVEGGCGQLRARELAPSARRIE 339
>gi|56478307|ref|YP_159896.1| ribosomal RNA large subunit methyltransferase N [Aromatoleum
aromaticum EbN1]
gi|56314350|emb|CAI08995.1| predicted Fe-S-cluster redox enzyme,radical SAM family [Aromatoleum
aromaticum EbN1]
Length = 397
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 78/273 (28%), Positives = 128/273 (46%), Gaps = 26/273 (9%)
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+E+V +P R LCVS+QVGC++ C+FC TG L+R L + EI+ QV+LARS
Sbjct: 125 ADGQTVESVLLP---RDGLCVSTQVGCAVGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR 181
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
R + +V MGMGEP N DNV +++++ G+ + +
Sbjct: 182 -------------------RAVRKVVFMGMGEPAHNLDNVLEAIALLGTEGGIG--HKNL 220
Query: 218 TLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
ST G R+ + LA+SLH LR L+P + L++ Y
Sbjct: 221 VFSTVGDRRVFERLPQGSVKPALALSLHTTRPALRTKLMPRAPRLDPAELVELGETYARA 280
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
+ I +++ +L G+ND + ++++L G A +N IP+N G + +
Sbjct: 281 T-GYPIQYQWTLLAGVNDDDEELDGIVRLLAGKYAVMNFIPYNSVAGAGFARPSWEHAAA 339
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+ + R G + +R G D+ CGQL++
Sbjct: 340 MARYLHRRGILTKLRHSAGQDVDGGCGQLRARV 372
>gi|221503269|gb|EEE28967.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 619
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 33/281 (11%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A +
Sbjct: 208 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 258
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
I NIV MGMGEPL N+++V S+ + + R+ +ST G
Sbjct: 259 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 308
Query: 227 NIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARR--- 281
I ++ + LA+SLHA R L+P + LE +++A +
Sbjct: 309 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 368
Query: 282 -----ITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWP-GCEYLCSDQKD 333
+ EY+M++ +ND+ A L +IL+ +NLIP+NP +Y S Q+
Sbjct: 369 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 428
Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
+ F +++ +R G DI +ACGQL + +
Sbjct: 429 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQEE 469
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRF 92
+IW+++ + ++DF+ + D+ + + L ++F + ++ K S T K LL F
Sbjct: 59 HAQKIWRYVVQKNVQDFREIPDLPRRLYATLAENFCLHASRVLRTKTSRDRSTTKLLLEF 118
Query: 93 PARCI 97
P
Sbjct: 119 PDGSQ 123
>gi|323452575|gb|EGB08449.1| hypothetical protein AURANDRAFT_64082 [Aureococcus anophagefferens]
Length = 399
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 106/362 (29%), Positives = 158/362 (43%), Gaps = 41/362 (11%)
Query: 34 RTSQIWKWIYVRGIRDF---QGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90
RT +WK + R RD + ++S+ R L + D + + T +
Sbjct: 58 RTRSVWKAL--REGRDPCVQEETPELSRWTRETLTAAYGSGA----DARCADARTAEDGT 111
Query: 91 RFPARCIGGPVEIETVYIPEKSRG----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
G +E V IP+ +RG TLCVSSQVGC++ C+FC TG L+R+LT +E
Sbjct: 112 TKLLVEFGDRDAVEAVLIPQLTRGKATSTLCVSSQVGCAMGCAFCATGKMGLIRSLTDDE 171
Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
I Q+ LA P + +IV MGMG+ N + K + +D
Sbjct: 172 IAAQLWLALRAARSVPDLP------------PLRSIVFMGMGDAGTNPKHAKAAAECFTD 219
Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR------K 260
FS+ R+TLST G P+ LA S+HAV DLR LVP +
Sbjct: 220 PDRFGFSRHRLTLSTVGPSPSAFLALAAAPGQLAWSVHAVDADLRKRLVPTAAWEPEALR 279
Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINL 315
L + A R P S R + +L G+NDS A L + ++ + A ++L
Sbjct: 280 DGLLDALRATR--PMHSKERSVMLAVTLLAGVNDSLEHARALAEFVQPVRAETPRLIVDL 337
Query: 316 IPFNPWPGCE-YLCSDQKDIVTFSECIKRS--GYSSPIRTPRGLDILAACGQLKSLSKRI 372
IP+NP + + + F +K G +R RG D AACGQL + +++
Sbjct: 338 IPYNPIDAADAFQRPSFDAVSAFQRELKAHAPGLFIGVRNARGDDEAAACGQLATNAQKR 397
Query: 373 PK 374
+
Sbjct: 398 RR 399
>gi|224003013|ref|XP_002291178.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
CCMP1335]
gi|220972954|gb|EED91285.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
CCMP1335]
Length = 284
Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 97/302 (32%), Positives = 146/302 (48%), Gaps = 26/302 (8%)
Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCS 125
F+ + ++ + S T K + +E+V + SR TLCVSSQVGC+
Sbjct: 1 FATLTSKVQSYRTSKDGSTTKIAVELQ-----DGHVVESVLMRHAGSRATLCVSSQVGCA 55
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC TGT + NLT+ EIL Q++ A +L I N+V M
Sbjct: 56 MGCTFCATGTMGIRGNLTSGEILEQLVHASRILAFDL----------------IRNVVFM 99
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GMGEPL N+ NV + D + + R+T+ST G V I + + V LA+SLH
Sbjct: 100 GMGEPLNNYANVLAACRAMIDRRLWNLAHNRVTVSTVGVVSRIRDLTRDLPEVNLALSLH 159
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + +R +VP + P+E LI+A + ++ +R EYVML+G + A L +
Sbjct: 160 APNQKMREAIVPAAKGTPIESLIEALDAHM-MAKKKRAMIEYVMLEGDTSTIEAAHQLGQ 218
Query: 305 ILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
+ +G +NLIP+N + C ++ + F + G IR G DI ACG
Sbjct: 219 LCRGRQLVVNLIPYNKTDVRDKLSCPSEEHMQEFRSIVSSYGSFCSIRRTMGADIAGACG 278
Query: 364 QL 365
QL
Sbjct: 279 QL 280
>gi|300858724|ref|YP_003783707.1| hypothetical protein cpfrc_01307 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686178|gb|ADK29100.1| hypothetical protein cpfrc_01307 [Corynebacterium
pseudotuberculosis FRC41]
Length = 203
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 7/191 (3%)
Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
G GEPL N+ V ++ + G S+R +T+ST G P I ++ EE V LA+S
Sbjct: 14 GWGEPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVS 73
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
LH ++LRN LVP N ++ + ++DA R+Y S RR++ EY +++ +ND P A L
Sbjct: 74 LHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRS-GRRVSIEYALIRDVNDQPWRADML 132
Query: 303 IK-ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
K + K + +NLIP NP PG E+ S + F + G +R RG +I
Sbjct: 133 GKKLHKALGSLVHVNLIPLNPTPGSEWDASPKDRQHEFVRRVIAQGVPCTVRDTRGQEIA 192
Query: 360 AACGQLKSLSK 370
AACGQL + +
Sbjct: 193 AACGQLAAEER 203
>gi|307824710|ref|ZP_07654934.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
gi|307734364|gb|EFO05217.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
Length = 217
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 96/229 (41%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
+T EI+ Q L A L E +I NIV MG GEPL NFD VKK+
Sbjct: 1 MTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFMGQGEPLHNFDAVKKAC 49
Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK 260
I G S ++IT+ST+G++P + R +EI V LA+SLH+ + RN L+PIN+K
Sbjct: 50 EIFLSKHGTSIGVQKITISTAGYIPGLKRWSQEIPGVNLALSLHSPFEEKRNELIPINKK 109
Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
YPL+ ++ P L+ + IT+EY+++K NDSP DA L IL G A INLIPFN
Sbjct: 110 YPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFNS 168
Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
+PG Y D I F E + + IR+ +G D+LAACGQL S +
Sbjct: 169 FPGSHYKRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNSKN 217
>gi|194693462|gb|ACF80815.1| unknown [Zea mays]
Length = 206
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 6/197 (3%)
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MGMGEP+ N +V ++ + L +R +T+ST G I + ++ LA+SL
Sbjct: 1 MGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVGVPNTIKMLASHKLQSTLAVSL 58
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR +VP + YPL L+D C+ Y L RR++FEY +L GIND A L
Sbjct: 59 HAPNQKLRETIVPSAKSYPLGALMDDCKSYF-LETGRRVSFEYTLLAGINDEKEHAEELA 117
Query: 304 KILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++L+ +NLIP+NP G EY +K + F + ++ + +R RGLD AA
Sbjct: 118 ELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANAA 177
Query: 362 CGQLKSLSKRIPKVPRQ 378
CGQL++ ++ P + +
Sbjct: 178 CGQLRNEFQKNPLLEIE 194
>gi|224014863|ref|XP_002297093.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968212|gb|EED86561.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 319
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 93/316 (29%), Positives = 136/316 (43%), Gaps = 39/316 (12%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY------------IPEKSRGTLCVSSQ 121
+V S DGT K LLR V I R T+C+SSQ
Sbjct: 19 SLVHTSTSSDGTTKLLLRLMDGLEVETVLIPFWADVAQKKRINEKDNSSLGRTTVCISSQ 78
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
VGC C+FC TG +R+LT +EIL Q+ A+ ++ I+N
Sbjct: 79 VGCRQGCTFCATGRMGKLRSLTTDEILAQLFYAKKVVRVVLP--------------PITN 124
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
IV MGMG+ N D VK +++I + FS R+T+ST P + +LA
Sbjct: 125 IVAMGMGDAADNVDAVKGAINIMTRRELFQFSASRVTVSTVAPSPQAFLDFADSKCILAW 184
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
S+HA ++LR LVP KYP+ L R E ++ G+NDS R+A
Sbjct: 185 SVHATRDELRKQLVP-TTKYPMVELRQGLIDALKQRKLRTCMIEVALMDGVNDSMREAEE 243
Query: 302 LIKILKGIPAKI-------NLIPFNPWPG-----CEYLCSDQKDIVTFSECIKRSGYSSP 349
L + L I ++ NLIP+N Y + ++ F + ++ +
Sbjct: 244 LAEFLTYITNEVPGSKLLCNLIPYNDIGEGAGGVVAYRKPSMEKVMAFQKRLQELSVYAH 303
Query: 350 IRTPRGLDILAACGQL 365
+R RG + +ACGQL
Sbjct: 304 VRGTRGDEENSACGQL 319
>gi|147867042|emb|CAN80514.1| hypothetical protein VITISV_023658 [Vitis vinifera]
Length = 206
Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
MGMGEP+ N +V ++ + + +R IT+S+ G I ++ ++ LAISL
Sbjct: 1 MGMGEPMLNLKSVIEAHRCLNKD--VQIGQRMITISSVGVPNTIKKLASYKLQSTLAISL 58
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND+ A+ L
Sbjct: 59 HAPNQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYTLLAGVNDAVEHAIELA 117
Query: 304 KILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
++L +NLIPFNP G E+ + F+ ++ + +R RGLD AA
Sbjct: 118 ELLHEWGPGYHVNLIPFNPIEGSEFQRP-YNKVQAFAAALESRKVTVSVRQTRGLDASAA 176
Query: 362 CGQLKSLSKRIP 373
CGQL++ ++ P
Sbjct: 177 CGQLRNEFQKSP 188
>gi|291614657|ref|YP_003524814.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
gi|291584769|gb|ADE12427.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
Length = 412
Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 104/440 (23%), Positives = 167/440 (37%), Gaps = 101/440 (22%)
Query: 12 MMREELEEALLKIGIPQRHVR--MRT-SQIWKWIYVRGIRDFQGMSDISQEVRHLL---- 64
M L + L +G H +R SQ+ Y R + +R+ L
Sbjct: 1 MRISHLRQRLYDLGAKPCHEDRLLRGWSQVCS--YDRK-GSPAE-TFFPLALRNELPGIE 56
Query: 65 ----------NQHFSIIYPEI---VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK 111
++H + + E K + +E+V +P
Sbjct: 57 AELDGLARLKSEHPDTLTLPLSQGERELNRHSDNEKVARLLIE--LHDGQMVESVLLP-- 112
Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
RG LCVS+QVGC++ C FC +G L+R L + EI+ QV+LAR
Sbjct: 113 -RGGLCVSTQVGCAVGCVFCMSGRDGLLRQLGSAEIVAQVVLARKR-------------- 157
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
R +S +V MGMGEP N DNV +++ + + + + LST G + R+
Sbjct: 158 -----RAVSKVVFMGMGEPAHNLDNVLEAIELLGTQ--GNIGHKNLVLSTVGDLRVFERL 210
Query: 232 GEE-----------------------------------------------IGVMLAISLH 244
E + LA+SLH
Sbjct: 211 MEGLTHKPSPQPSGGTTDHSTRPSENNGQVAGHPACGRGGNRERQSSIAAVKPALALSLH 270
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
LR L+P + P+E L++ Y + + +++ +++G+NDS + +++
Sbjct: 271 TTDEVLRTRLLPQAPRIPVEELVERAEIYARAT-GYPVQYQWTLIEGVNDSDAELARIVQ 329
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG A +N IPFN G Y + I + + G S +R G +I ACGQ
Sbjct: 330 LLKGKYAIMNFIPFNEVDGLTYRRPSGERIAAMAYALNGQGIYSRVRDSAGQEIEGACGQ 389
Query: 365 LKSLSKRIPKVPRQEMQITG 384
L++ R K I G
Sbjct: 390 LRA---RAAKTRESASNIRG 406
>gi|289571070|ref|ZP_06451297.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544824|gb|EFD48472.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length = 189
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
MGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SL
Sbjct: 1 MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 60
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L
Sbjct: 61 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVT-GRRVSIEYALIRDVNDQPWRADLLG 119
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
K L + A +NLIP NP PG ++ S + F + ++ G S +R RG +I A
Sbjct: 120 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 179
Query: 361 ACGQLKS 367
ACGQL +
Sbjct: 180 ACGQLAA 186
>gi|307127683|ref|YP_003879714.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B]
gi|306484745|gb|ADM91614.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B]
Length = 300
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 77/371 (20%), Positives = 142/371 (38%), Gaps = 79/371 (21%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + D ++ + S+I+ +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
P+ + + ++ ++ + I L+ G E + LA L
Sbjct: 173 NRAFPI---EKLFAAIEYYIETTNRRVTFEYIMLNEVND-------GVEQALELAELLKN 222
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ L+P N S R+ Y LK
Sbjct: 223 IKKLSYVNLIPYNPVSE--------HDQYSRSPKERVLAFYDTLKK-------------- 260
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
KG+ + R G DI AACGQL
Sbjct: 261 -KGVNCVV-------------------------------------RQEHGTDIDAACGQL 282
Query: 366 KSLSKRIPKVP 376
+S + + +
Sbjct: 283 RSNTMKRDRQK 293
>gi|148662723|ref|YP_001284246.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra]
gi|148506875|gb|ABQ74684.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra]
Length = 195
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 7/186 (3%)
Query: 188 GEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
GEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SLH
Sbjct: 8 GEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLH 67
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L K
Sbjct: 68 APDDGLRDTLVPVNNRWRISEALDAARYYANVT-GRRVSIEYALIRDVNDQPWRADLLGK 126
Query: 305 ILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L + A +NLIP NP PG ++ S + F + ++ G S +R RG +I AA
Sbjct: 127 RLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAA 186
Query: 362 CGQLKS 367
CGQL +
Sbjct: 187 CGQLAA 192
>gi|15610016|ref|NP_217395.1| hypothetical protein Rv2879c [Mycobacterium tuberculosis H37Rv]
gi|1403399|emb|CAA98355.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
Length = 189
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 7/186 (3%)
Query: 188 GEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
GEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SLH
Sbjct: 2 GEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLH 61
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L K
Sbjct: 62 APDDGLRDTLVPVNNRWRISEALDAARYYANVT-GRRVSIEYALIRDVNDQPWRADLLGK 120
Query: 305 ILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L + A +NLIP NP PG ++ S + F + ++ G S +R RG +I AA
Sbjct: 121 RLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAA 180
Query: 362 CGQLKS 367
CGQL +
Sbjct: 181 CGQLAA 186
>gi|168492917|ref|ZP_02717060.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
CDC3059-06]
gi|183576957|gb|EDT97485.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
CDC3059-06]
Length = 300
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 77/371 (20%), Positives = 143/371 (38%), Gaps = 79/371 (21%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + D ++ + S+I+ +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
P+ + + ++ ++ + I L+ G E + LA L
Sbjct: 173 NRAFPI---EKLFAAIEYYIETTNRRVTFEYIMLNEVND-------GVEQALELAELLKN 222
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ L+P N S R+ Y LK
Sbjct: 223 IKKLSYVNLIPYNPVSE--------HDQYSRSPKERVLAFYDTLKK-------------- 260
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
KG+ + R G DI AACGQL
Sbjct: 261 -KGVNCVV-------------------------------------RQEHGTDIDAACGQL 282
Query: 366 KSLSKRIPKVP 376
+S + + +
Sbjct: 283 RSNTMKRDRQK 293
>gi|289524569|ref|ZP_06441423.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289502191|gb|EFD23355.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 197
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 23/219 (10%)
Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
I +WIY + + DFQ M+++S+E+R L + P + E+ S DGT+K+L +F
Sbjct: 1 ICQWIYQKKVFDFQEMTNLSKELRGKLADAVMVAPPILTREETSKDGTKKYLWQFH---- 56
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+E+V + ++ R T C+S+QVGC L C+FC +G VR+L+A EI+ Q L L
Sbjct: 57 -DGERVESVLLTQEGRLTACLSTQVGCPLACAFCASGQGGFVRDLSAGEIVGQFLAMEKL 115
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
GR I N+V MGMGEP N ++V KS+ I ++ RRI
Sbjct: 116 -----------------AGRDIDNVVYMGMGEPFLNQESVFKSIKILNEPKMRGLGIRRI 158
Query: 218 TLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255
T+ST+G VP I + E ++ V L++SLHA ++ LR+ L+
Sbjct: 159 TISTAGIVPGILALAEAQMPVKLSVSLHAPNDRLRSKLM 197
>gi|319942260|ref|ZP_08016575.1| radical SAM domain-containing protein [Sutterella wadsworthensis
3_1_45B]
gi|319804133|gb|EFW01033.1| radical SAM domain-containing protein [Sutterella wadsworthensis
3_1_45B]
Length = 392
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 77/331 (23%), Positives = 130/331 (39%), Gaps = 29/331 (8%)
Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115
+ + L + V S + IE V +P R
Sbjct: 77 LPAVLMAALANI--RSRLDAVLTVRSRHPGADPESERLLLTLADGQTIEEVLLP---RRG 131
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+CVS+Q+GC++ C FC TG LVR L+ EI + + +
Sbjct: 132 VCVSTQMGCAVGCVFCMTGKGGLVRQLSDMEI------------------AAQAALARRL 173
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEE 234
+ +V MGMGEP N DNV ++ + G + + +ST G +
Sbjct: 174 RPETKKVVFMGMGEPSHNLDNVLRAAEFLALYGGFG--HKDLVISTVGDERLFEALNRMS 231
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
LA+SLH + R L+P K ++ L +A + + +++ +++G+ND
Sbjct: 232 ARPALAVSLHTTDDAKRRTLLPRGAKMTVKALTEAAEAWARKT-GYPTQYQWTLIQGVND 290
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
+ LI++L G A +N IP N G Y D++ +K +G + +R
Sbjct: 291 GEEEVNRLIELLTGHYAIVNFIPVNAVDGSVYSRPDREHAAHLVRRLKSAGIVATLRDSA 350
Query: 355 GLDILAACGQLKSL--SKRIPKVPRQEMQIT 383
D+ CGQL++ S Q ++ T
Sbjct: 351 AQDVDGGCGQLRARVLSAESKARAEQAVRRT 381
>gi|332076047|gb|EGI86513.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae GA41301]
Length = 300
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 77/371 (20%), Positives = 141/371 (38%), Gaps = 79/371 (21%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMCQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC G K R+L EI+ Q++L + D ++ + S+I+ +
Sbjct: 113 IGCTFCAFGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
P+ + + ++ ++ + I L+ G E + LA L
Sbjct: 173 NRAFPI---EKLFAAIEYYIETTNRRVTFEYIMLNEVND-------GVEQALELAELLKN 222
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ L+P N S R+ Y LK
Sbjct: 223 IKKLSYVNLIPYNPVSE--------HDQYSRSPKERVLAFYDTLKK-------------- 260
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
KG+ + R G DI AACGQL
Sbjct: 261 -KGVNCVV-------------------------------------RQEHGTDIDAACGQL 282
Query: 366 KSLSKRIPKVP 376
+S + + +
Sbjct: 283 RSNTMKRDRQK 293
>gi|221231562|ref|YP_002510714.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC
700669]
gi|220674022|emb|CAR68535.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC
700669]
Length = 300
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 76/371 (20%), Positives = 142/371 (38%), Gaps = 79/371 (21%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + D ++ + S+ + +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSTMKI 172
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
P+ + + ++ ++ + I L+ G E + LA L
Sbjct: 173 NRAFPI---EKLFAAIEYYIETTNRRVTFEYIMLNEVND-------GVEQALELAELLKN 222
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ L+P N S R+ Y LK
Sbjct: 223 IKKLSYVNLIPYNPVSE--------HDQYSRSPKERVLAFYDTLKK-------------- 260
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
KG+ + R G DI AACGQL
Sbjct: 261 -KGVNCVV-------------------------------------RQEHGTDIDAACGQL 282
Query: 366 KSLSKRIPKVP 376
+S + + +
Sbjct: 283 RSNTMKRDRQK 293
>gi|237840113|ref|XP_002369354.1| GPI transamidase 8, putative [Toxoplasma gondii ME49]
gi|211967018|gb|EEB02214.1| GPI transamidase 8, putative [Toxoplasma gondii ME49]
gi|221503977|gb|EEE29654.1| GPI transamidase, putative [Toxoplasma gondii VEG]
Length = 270
Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 29/271 (10%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC+ CSFC G +R L+A+EI QVL G KI +
Sbjct: 9 AGCAFNCSFCSVGKSGFLRQLSADEITDQVLFFLR------------------QGIKIDS 50
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+ MGMGEPL N + ++ I +D + +FS R++ +ST G +P I ++ EE V LA
Sbjct: 51 VSFMGMGEPLANPK-MFDAIRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEHPQVNLA 109
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
SLH+ + RNILVP NR +P+E + D + RRI Y+++KG N++ A
Sbjct: 110 FSLHSPFPEERNILVPANRMFPMEEVFDLLDERLAKT-GRRIWISYILIKGRNNTEEHAK 168
Query: 301 NLIKILKGIP------AKINLIPFNPWPG--CEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
L +L+ +N+IP+N G ++ F++ +++ S R
Sbjct: 169 ALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSAAEVNHFTDLLRKLHLSVSRRH 228
Query: 353 PRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
G I AACGQ+ + + +++ Q
Sbjct: 229 TIGSAIDAACGQMHAEYEVGQLTKQRKAQQA 259
>gi|159479394|ref|XP_001697778.1| hypothetical protein CHLREDRAFT_120230 [Chlamydomonas reinhardtii]
gi|158274146|gb|EDO99930.1| predicted protein [Chlamydomonas reinhardtii]
Length = 239
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 23/249 (9%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC+TG + L+ NL+ +I+ I+N+V M
Sbjct: 1 MNCQFCFTGRRGLLGNLSTAQIIE--------------QPQPRPQQSQQAPPPITNLVFM 46
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-------GEEIGVM 238
GMGEPL N V ++ I + GL+ S R+TLST G +P + G V
Sbjct: 47 GMGEPLHNPTAVFAAIDILAHRHGLAMSPSRVTLSTVGLLPQLQHFLDSSRGEGGRARVC 106
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEM--LIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LA+S+HA +++LR +VP N + L + L R + FEY +L+G+ND P
Sbjct: 107 LAVSIHAGTDELRGAIVPSNTRLSLPPAGFSPSNNTIRPLRAGRYVLFEYTLLRGVNDRP 166
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
DA L++ K I NLI FNP+PG Y S + ++ F + + +G +R +G
Sbjct: 167 EDAAALLEATKDIECSFNLIMFNPFPGTLYSPSTPERLLAFQKVLWAAGRIVHVRLSKGD 226
Query: 357 DILAACGQL 365
D +AACGQL
Sbjct: 227 DGMAACGQL 235
>gi|221483043|gb|EEE21367.1| GPI transamidase, putative [Toxoplasma gondii GT1]
Length = 270
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 29/271 (10%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC+ CSFC G +R L+A+EI QVL G KI +
Sbjct: 9 AGCAFNCSFCSVGKSGFLRQLSADEITDQVLFFLR------------------QGIKIDS 50
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
+ MGMGEPL N + ++ I +D + +FS R++ +ST G +P I ++ EE V LA
Sbjct: 51 VSFMGMGEPLANPK-MFDAIRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEHPQVNLA 109
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
SLH+ + RNILVP NR +P+E + D + RRI Y+++KG N++ A
Sbjct: 110 FSLHSPFPEERNILVPANRMFPMEEVFDLLDERLAKT-GRRIWISYILIKGRNNTEEHAK 168
Query: 301 NLIKILKGIP------AKINLIPFNPWPG--CEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
L +L+ +N+IP+N G ++ F++ +++ S R
Sbjct: 169 ALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSATEVNHFTDLLRKLHLSVSRRH 228
Query: 353 PRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
G I AACGQ+ + + +++ Q
Sbjct: 229 TIGSAIDAACGQMHAEYEVGQLTKQRKAQQA 259
>gi|75762654|ref|ZP_00742496.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489853|gb|EAO53227.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 246
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 23/192 (11%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L
Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ F I + ++ S DGT K+L + IETV + + ++CV++QVGC
Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLY-----DGYSIETVLMRHEYGNSICVTTQVGC 125
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C+FC + L RNL A EI+ QV+ + L + ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171
Query: 185 MGMGEPLCNFDN 196
MG+GEP N+DN
Sbjct: 172 MGIGEPFDNYDN 183
>gi|225860741|ref|YP_002742250.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229131|ref|ZP_06962812.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|298255804|ref|ZP_06979390.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|225727931|gb|ACO23782.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
Taiwan19F-14]
gi|327390124|gb|EGE88467.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae GA04375]
Length = 300
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 75/371 (20%), Positives = 140/371 (37%), Gaps = 79/371 (21%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + +++ +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQKWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QVGC+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + D ++ + S+I+ +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
P+ + + ++ ++ + I L+ G E + LA L
Sbjct: 173 NRAFPI---EKLFAAIEYYIETTNRRVTFEYIMLNEVND-------GVEQALELAELLKN 222
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ L+P N S R+ Y LK
Sbjct: 223 IKKLSYVNLIPYNPVSE--------HDQYSRSPKERVLAFYDTLKK-------------- 260
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
KG + R G DI AACGQL
Sbjct: 261 -KGGNCVV-------------------------------------RQEHGTDIDAACGQL 282
Query: 366 KSLSKRIPKVP 376
+ + + +
Sbjct: 283 RFNTMKRDRQK 293
>gi|225854275|ref|YP_002735787.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA]
gi|225722744|gb|ACO18597.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA]
Length = 300
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 75/371 (20%), Positives = 139/371 (37%), Gaps = 79/371 (21%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN
Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
F + + + S DGT K+L P + IETV + + ++CV++QV C+
Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVSCN 112
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC +G K R+L EI+ Q++L + D ++ + S+I+ +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
P+ + + ++ ++ + I L+ G E + LA L
Sbjct: 173 NRAFPI---EKLFAAIEYYIETTNRRVTFEYIMLNEVND-------GVEQALELAELLKN 222
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ L+P N S R+ Y LK
Sbjct: 223 IKKLSYVNLIPYNPVSE--------HDQYSRSPKERVLAFYDTLKK-------------- 260
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
KG + R G DI AACGQL
Sbjct: 261 -KGGNCVV-------------------------------------RQEHGTDIDAACGQL 282
Query: 366 KSLSKRIPKVP 376
+ + + +
Sbjct: 283 RFNTMKRDRQK 293
>gi|313624986|gb|EFR94881.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
FSL J1-023]
Length = 179
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
R IT+STSG P I E V LAISLHA +N+LR ++ IN+ Y +E L++A
Sbjct: 1 GARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIH 60
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPG-CEYLC 328
+Y +N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y
Sbjct: 61 YYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYER 119
Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
S ++D++ F + +K++G + IR G DI AACGQL+S + V + Q
Sbjct: 120 STKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQ 172
>gi|313620442|gb|EFR91829.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
FSL S4-378]
Length = 180
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 104/174 (59%), Gaps = 5/174 (2%)
Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
+ R IT+STSG P I + V LAISLHA +N+LR ++ IN+ Y +E L++A
Sbjct: 1 INARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAI 60
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPG-CEYL 327
+Y +N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y
Sbjct: 61 HYYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYE 119
Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
S ++D++ F + +K++G + IR G DI AACGQL+S + V + Q
Sbjct: 120 RSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQ 173
>gi|167951357|ref|ZP_02538431.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 220
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 25/228 (10%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
+ + +L+ + + +E +++G ++KWI+ +G+ DF M+DIS+ +R
Sbjct: 1 MNETNLMELDQRSMERCFVELG----SKAFHGRNVFKWIHKQGVIDFNQMTDISKRLRVQ 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L I PE+V E+ + DGTRKW+L+ IETVYIP+ R T+CVSSQVG
Sbjct: 57 LESLAEIRLPELVFEQPARDGTRKWVLQL-----DDGQRIETVYIPDGERSTICVSSQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L CSFC TG+ + G + +NIV
Sbjct: 112 CALNCSFCSTGSPGF----------------QPQSLGGGDYRPGLGWPAVNWWHPPTNIV 155
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
+MGMGEPL NFD V ++ I D SK R+T+STSG VP + ++
Sbjct: 156 LMGMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQL 203
>gi|303258097|ref|ZP_07344105.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
gi|302859116|gb|EFL82199.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
Length = 350
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 27/276 (9%)
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
IE V +P R +CVS+QVGC++ C FC TG L+R LT E+ QV A
Sbjct: 88 DGQLIECVLLP---REGVCVSTQVGCAVGCVFCMTGKSGLIRQLTDLEVAGQVQYAMR-- 142
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
+ +V+MGMGEP N +V ++ G+ + + +
Sbjct: 143 -----------------NAPVKKVVLMGMGEPSHNLRSVFSAVEHIVRYSGIGY--KEVV 183
Query: 219 LSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+ST G + E LAISLH+ ++ R L+P + ++ +++ Y +
Sbjct: 184 ISTVGDKRLFKALMESQIKPALAISLHSAMDEKRRSLLPRAAELTVKEILEFGAKYAEV- 242
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
I +++ ++ G+ND + L + A +N+IP N G Y + I
Sbjct: 243 GKYPIQYQWTLINGVNDGVDEIEALAPLWS-RQAILNMIPVNAVEGSPYKRPSAEQIERI 301
Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
E + +G R D+ CGQL++ + +
Sbjct: 302 KEACRANGILLKFRDSAAQDVDGGCGQLRARALKRK 337
>gi|330998689|ref|ZP_08322418.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329576428|gb|EGG57940.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 341
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 27/276 (9%)
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
IE V +P R +CVS+QVGC++ C FC TG L+R LT E+ QV A
Sbjct: 79 DGQLIECVLLP---REGVCVSTQVGCAVGCVFCMTGKSGLIRQLTDLEVAGQVQYAMR-- 133
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
+ +V+MGMGEP N +V ++ G+ + + +
Sbjct: 134 -----------------NAPVKKVVLMGMGEPSHNLRSVFSAVEHIVRYSGIGY--KEVV 174
Query: 219 LSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+ST G + E LAISLH+ ++ R L+P + ++ +++ Y +
Sbjct: 175 ISTVGDKRLFKALMESQIKPALAISLHSAMDEKRRSLLPRAAELTVKEILEFGAKYAEV- 233
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
I +++ ++ G+ND + L + A +N+IP N G Y + I
Sbjct: 234 GKYPIQYQWTLINGVNDGVDEIEALAPLWS-RQAILNMIPVNAVEGSPYKRPSAEQIERI 292
Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
E + +G R D+ CGQL++ + +
Sbjct: 293 KEACRANGILLKFRDSAAQDVDGGCGQLRARALKRK 328
>gi|70948819|ref|XP_743877.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56523585|emb|CAH84934.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 379
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 103/362 (28%), Positives = 154/362 (42%), Gaps = 50/362 (13%)
Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS--IIYPEIVDEKISCD 83
R+ + R QI IY I + M +I ++R L FS I+ + + E
Sbjct: 15 ERNRYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKSIFSENILSIKPIKEDKYDR 74
Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
K L + IE + S +LC+SSQ+GCS C FC TG + R L
Sbjct: 75 -AYKILFECKDKEK-----IEATALDFGSHTSLCISSQIGCSFGCKFCATGQIGIKRQLE 128
Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
+EI Q+L + S I N+ MGMGEPL N NV +++
Sbjct: 129 LDEITDQLLYFQ------------------SKNVNIKNVSFMGMGEPLANP-NVFEAIRF 169
Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYP 262
++S S S RRI +ST G +P I ++ E V L+ SLH+ + R+ LVPIN+ +P
Sbjct: 170 FNNSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPINKLFP 229
Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AKINLI 316
++D ++ R+ Y+++K +NDS A L + P I LI
Sbjct: 230 FHEVLDLLDDRIAKTSR-RVWISYILIKDVNDSTDHAEALCDHILKRPPSVRYLYNICLI 288
Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGY---SSPI----------RTPRGLDILAACG 363
P+N G + + + +K+ + I R G I AACG
Sbjct: 289 PYN--KGITFHRISFFYRYSIIKIVKKQMIYTKYTTINMFFFLSFLNRNSFGYAIDAACG 346
Query: 364 QL 365
QL
Sbjct: 347 QL 348
>gi|77415028|ref|ZP_00791102.1| Unknown [Streptococcus agalactiae 515]
gi|77158922|gb|EAO70159.1| Unknown [Streptococcus agalactiae 515]
Length = 168
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 5/166 (3%)
Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
IT+STSG I E + V L++SLHA +N+LR+ ++ INR +PLE L A +Y
Sbjct: 1 ITVSTSGLAHKIREFANEGVQVNLSVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIE 60
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQK 332
+N R+TFEY+ML G+ND+P +A L + K I + +NLIP+NP + Y S ++
Sbjct: 61 TTNR-RVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKE 119
Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
+ F + +K++G + +R G DI AACGQL+S + + + +
Sbjct: 120 RVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAK 165
>gi|298502552|ref|YP_003724492.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A]
gi|298238147|gb|ADI69278.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A]
Length = 288
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/360 (20%), Positives = 135/360 (37%), Gaps = 79/360 (21%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
+++ +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN F + +
Sbjct: 1 MQKWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56
Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
+ S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G
Sbjct: 57 IVQESADGTVKYLFELP-----DGMLIETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
K R+L EI+ Q++L + D ++ + S+I+ + P+ +
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPI---EK 168
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256
+ ++ ++ + I L+ G E + LA L + L+P
Sbjct: 169 LFAAIEYYIETTNRRVTFEYIMLNEVND-------GVEQALELAELLKNIKKLSYVNLIP 221
Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
N S R+ Y LK KG +
Sbjct: 222 YNPVSE--------HDQYSRSPKERVLAFYDTLKK---------------KGGNCVV--- 255
Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
R G DI AACGQL+ + + +
Sbjct: 256 ----------------------------------RQEHGTDIDAACGQLRFNTMKRDRQK 281
>gi|330950790|gb|EGH51050.1| hypothetical protein PSYCIT7_05158 [Pseudomonas syringae Cit 7]
Length = 158
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/138 (44%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALN 301
+HA ++ LRN LVP+N+KYPL+ML+++CR Y +R+ T EY MLK IND A+
Sbjct: 1 MHAPNDALRNQLVPLNKKYPLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVE 60
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
+I++LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AA
Sbjct: 61 MIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAA 120
Query: 362 CGQLKSLS-KRIPKVPRQ 378
CGQL R + R
Sbjct: 121 CGQLVGQVMDRTRRSERY 138
>gi|156102374|ref|XP_001616880.1| Fe-S-cluster redox enzyme [Plasmodium vivax SaI-1]
gi|148805754|gb|EDL47153.1| Fe-S-cluster redox enzyme, putative [Plasmodium vivax]
Length = 337
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 92/355 (25%), Positives = 149/355 (41%), Gaps = 49/355 (13%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K L + + + G + R QI +Y I M ++ +R
Sbjct: 1 MEK----SRRYASLLKMVERNGFE----KYRLQQILDNMYKAKITSVSQMKNVPTNIRRE 52
Query: 64 LNQHFSIIYPEIV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
+ + FS I ++ D K L + IE + S +LC+SSQ+
Sbjct: 53 MKKIFSENLLSIKPLKEYKFDRAYKVLFECKDKEK-----IEATSLDFGSHKSLCISSQI 107
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCS C FC TG + R L +EI Q+L + S + N+
Sbjct: 108 GCSFACKFCATGQIGIKRQLELDEITDQLLYFQ------------------SKNEHVRNV 149
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
MGMGEPL N +V +S+ + + S RRI +ST G +P I ++ + V L+
Sbjct: 150 SFMGMGEPLANP-HVFESIHFFNHVNLFALSSRRINISTVGLLPGIKKLNDLFPQVNLSF 208
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLH+ ++ R+ LVPIN+ +P ++D + RR+ Y++LK +NDS A
Sbjct: 209 SLHSPFSEERDQLVPINKLFPFHEVLDLLDSRITRT-GRRVWISYILLKDVNDSKDHAEA 267
Query: 302 LIKILKGIP------AKINLIPFNPWPGCE--YLCSDQK-DIVTFSECIKRSGYS 347
L + P + LIP+N + + D++ I+ F G S
Sbjct: 268 LCSHICQRPRAVRYLYNVCLIPYNKAKNVDENFHRVDEEDKILQF-----EHGIS 317
>gi|323449897|gb|EGB05782.1| hypothetical protein AURANDRAFT_30404 [Aureococcus anophagefferens]
Length = 315
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 89/316 (28%), Positives = 129/316 (40%), Gaps = 35/316 (11%)
Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIET---VYIPEKSRGTLCVSSQVGCSLTCSFC 131
I + + DGT K L+R V I +++ T+CVSSQVGC C+FC
Sbjct: 14 IEESVSAPDGTLKLLVRLADGADVEAVVIPPSGGPAKNARAKSTVCVSSQVGCRQACAFC 73
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
TG L R+L+ EIL + N+V MGMGEP
Sbjct: 74 ATGKMGLARSLSGVEIL-------------AQIALATAAARAARLPVPRNVVFMGMGEPG 120
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSND 249
N V+ +++ D ++ + R+T+ST G P + G +A SLH+ +
Sbjct: 121 DNVGAVRDAVAALVDGARFAYGRDRVTVSTVGPAPGVFAELFGYADAPAVAWSLHSADEE 180
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLIKILK 307
LR LVP K+ L D R+ E V++ G+ND P DA + +K
Sbjct: 181 LRRTLVPTA-KHSAAELRDGLVRALEARPEKRRKAVLEVVLIAGVNDGPGDADAIAAFVK 239
Query: 308 GI------------PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTP 353
I +NLIP+N + + + F ++ G S R
Sbjct: 240 PIEAACTGTAGGRTGVLVNLIPYNANESVDPSFEPPAPDAVQAFQARLRDRGVWSSKRAE 299
Query: 354 RGLDILAACGQLKSLS 369
RG D AACGQL + S
Sbjct: 300 RGADDAAACGQLATAS 315
>gi|171920772|ref|ZP_02931966.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
str. ATCC 33698]
gi|185178859|ref|ZP_02964635.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gi|188024156|ref|ZP_02996884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
str. ATCC 27819]
gi|188518505|ref|ZP_03003979.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
str. ATCC 33695]
gi|188524054|ref|ZP_03004149.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
str. ATCC 33696]
gi|195867775|ref|ZP_03079776.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
str. ATCC 33175]
gi|198273491|ref|ZP_03206027.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
str. ATCC 27816]
gi|209554199|ref|YP_002284612.1| hypothetical protein UUR10_0208 [Ureaplasma urealyticum serovar 10
str. ATCC 33699]
gi|225550410|ref|ZP_03771359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
str. ATCC 27814]
gi|225551492|ref|ZP_03772438.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
str. ATCC 27618]
gi|171903525|gb|EDT49814.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
str. ATCC 33698]
gi|184209495|gb|EDU06538.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gi|188018787|gb|EDU56827.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
str. ATCC 27819]
gi|188997879|gb|EDU66976.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
str. ATCC 33695]
gi|195659915|gb|EDX53295.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
str. ATCC 33696]
gi|195660630|gb|EDX53886.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
str. ATCC 33175]
gi|198250011|gb|EDY74791.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
str. ATCC 27816]
gi|209541700|gb|ACI59929.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
str. ATCC 33699]
gi|225379307|gb|EEH01672.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
str. ATCC 27618]
gi|225379564|gb|EEH01926.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
str. ATCC 27814]
Length = 335
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 80/335 (23%), Positives = 149/335 (44%), Gaps = 44/335 (13%)
Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
+ QI+ WIY + I DF S+IS+ + +L ++F I + + + DG+ K+ L
Sbjct: 30 PFISKQIYSWIYQKRIFDFDKFSNISKSNQSILKENFDNNLLTINEYQSNSDGSIKFKLL 89
Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR--NLTAEEILL 149
I + I ++ + ++ G NL+ E++L
Sbjct: 90 TTINL-----IINCMIIKFENGFLIKIN------------PFGINDKKEIINLSTNELVL 132
Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
Q LL + L KI+N+++ G + L N + V ++I +D G
Sbjct: 133 QTLLVQQFLDQHKLG-------------KITNVIVKGSQDSLLNMEAVSNFINIINDENG 179
Query: 210 LSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV--PINRKYPLEML 266
L+ KR+I + TSG ++ + G+ + + L ISL+A ++ + L+ N+ + L
Sbjct: 180 LNIGKRKIVVWTSGVDVDLIKWGQLQNQIELIISLNASNSQVYKKLMLNKTNQNWSFIKL 239
Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
I+ + Y ++N R+ EY+++ IND+ A L+++LK I + LIP+N +
Sbjct: 240 IEQIKTYTEMTN-NRVVLEYLLIDKINDNLDYANELVELLKNILCYVLLIPYN----LNH 294
Query: 327 LCSDQKDIVTFSECIKRSGYSSP--IRTPRGLDIL 359
SD ++ F + + +R LDI
Sbjct: 295 KTSD--NLEEFFNILSINKIRISKRVRKSNDLDIS 327
>gi|226323828|ref|ZP_03799346.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758]
gi|225208012|gb|EEG90366.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758]
Length = 176
Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats.
Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
+ G ++SNIV+MG GEPL N+DN K + + SD GL+ S+R IT ST G VPNI
Sbjct: 7 QIQKITGERVSNIVIMGTGEPLDNYDNFLKFIHMVSDEHGLNISQRNITASTCGIVPNIR 66
Query: 230 RVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
R+ EE + LA+SLH + + R L+P+ KY L +++AC +Y + RRITFEY +
Sbjct: 67 RLAEEKLQITLALSLHGSNQEKRRSLMPVANKYELHEVLEACDYYFEKT-GRRITFEYSL 125
Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
+ G+ND+P DA L+ ILK +NLIP NP Y D+K F +
Sbjct: 126 VHGVNDTPEDAKELMGILKDRNCHLNLIPVNPIKERNYEKPDKKKCREFQK 176
>gi|171920082|ref|ZP_02931510.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
ATCC 27813]
gi|171902433|gb|EDT48722.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
ATCC 27813]
Length = 336
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 84/358 (23%), Positives = 163/358 (45%), Gaps = 43/358 (12%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + EL+E L ++G+ + QI+ WIY + I +F S+I++ +L +
Sbjct: 9 KEIYSLSLNELKEELFELGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+FS +I + + DG+ K+ + I + I K+ L + G +
Sbjct: 65 NFSNNLLKINSYQSNSDGSIKFEF-----LTDKNLIINCMIIKFKNGF-LIKINPFGINF 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
K + NL+ E++LQ+LL + L I+N+++ G
Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
+ + L N D V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A
Sbjct: 157 LQDSLLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216
Query: 246 VSNDLRNILV--PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
++ + ++ +N+ + LI+ + Y ++N R+ EY+++ IND A L+
Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP--IRTPRGLDIL 359
++LK I + LIP+N Y S ++ F + + IR LDI
Sbjct: 276 ELLKNILCYVLLIPYN---LNNYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS 328
>gi|289803429|ref|ZP_06534058.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 182
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 91/192 (47%), Positives = 115/192 (59%), Gaps = 12/192 (6%)
Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
PE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G
Sbjct: 1 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG--------- 51
Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
+ R I+N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP +
Sbjct: 52 -AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL 110
Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEY 286
++G+ I V LAISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EY
Sbjct: 111 DKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEY 170
Query: 287 VMLKGINDSPRD 298
VML +ND
Sbjct: 171 VMLDHVNDGTEH 182
>gi|313610609|gb|EFR85705.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes FSL F2-208]
Length = 171
Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 98/165 (59%), Gaps = 5/165 (3%)
Query: 221 TSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
TSG P I + V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N
Sbjct: 1 TSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR 60
Query: 280 RRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVT 336
RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D++
Sbjct: 61 -RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLA 119
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
F + +K++G + IR G DI AACGQL+S + V + Q
Sbjct: 120 FYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQ 164
>gi|13357773|ref|NP_078047.1| hypothetical protein UU214 [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|170761929|ref|YP_001752296.1| hypothetical protein UPA3_0221 [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|183508786|ref|ZP_02958251.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
ATCC 33697]
gi|11356788|pir||H82920 conserved hypothetical UU214 [imported] - Ureaplasma urealyticum
gi|6899181|gb|AAF30622.1|AE002120_14 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|168827506|gb|ACA32768.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|182675731|gb|EDT87636.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
ATCC 33697]
Length = 336
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 85/358 (23%), Positives = 163/358 (45%), Gaps = 43/358 (12%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + EL+E L K+G+ + QI+ WIY + I +F S+I++ +L +
Sbjct: 9 KEIYSLSLNELKEELFKLGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+FS +I + + DG+ K+ + I + I K+ L + G +
Sbjct: 65 NFSNNLLKINSYQSNSDGSIKFEF-----LTDKNLIINCMIIKFKNGF-LIKINPFGINF 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
K + NL+ E++LQ+LL + L I+N+++ G
Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
+ + L N D V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A
Sbjct: 157 LQDSLLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216
Query: 246 VSNDLRNILV--PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
++ + ++ +N+ + LI+ + Y ++N R+ EY+++ IND A L+
Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP--IRTPRGLDIL 359
++LK I + LIP+N Y S ++ F + + IR LDI
Sbjct: 276 ELLKNILCYVLLIPYN---LNNYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS 328
>gi|186701974|ref|ZP_02971605.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
gi|186700738|gb|EDU19020.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
Length = 336
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 85/358 (23%), Positives = 163/358 (45%), Gaps = 43/358 (12%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
+ + + EL+E L K+G+ + QI+ WIY + I +F S+I++ +L +
Sbjct: 9 KEIYSLSLNELKEELFKLGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+FS +I + + DG+ K+ + I + I K+ L + G +
Sbjct: 65 NFSNNLLKINSYQSNSDGSIKFEF-----LTDKNLIINCMIIKFKNGF-LIKINPFGINF 118
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
K + NL+ E++LQ+LL + L I+N+++ G
Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
+ + L N D V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A
Sbjct: 157 LQDILLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216
Query: 246 VSNDLRNILV--PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
++ + ++ +N+ + LI+ + Y ++N R+ EY+++ IND A L+
Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP--IRTPRGLDIL 359
++LK I + LIP+N Y S ++ F + + IR LDI
Sbjct: 276 ELLKNILCYVLLIPYN---LNNYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS 328
>gi|82794611|ref|XP_728508.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23484893|gb|EAA20073.1| unnamed protein product [Plasmodium yoelii yoelii]
Length = 351
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 97/339 (28%), Positives = 149/339 (43%), Gaps = 38/339 (11%)
Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS--IIYPEIVDEKISCD 83
++ + R QI IY I + M +I ++R L FS I+ + + E
Sbjct: 20 ERNKYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKNIFSENILSIKPIKEDKYDR 79
Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
K L + IE + S +LC+SSQ+GCS C FC TG + R L
Sbjct: 80 -AYKILFECKDKEK-----IEATALDFGSHTSLCISSQIGCSFGCKFCATGQIGIKRQLE 133
Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
+EI Q+L + S I N+ MGMGEPL N NV +++
Sbjct: 134 LDEITDQLLYFQ------------------SKNVNIKNVSFMGMGEPLANP-NVFEAIRF 174
Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYP 262
++S S S RRI +ST G +P I ++ E V L+ SLH+ + R+ LVPIN+ +P
Sbjct: 175 FNNSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPINKLFP 234
Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AKINLI 316
++D +N R+ Y+++K +NDS A L + P I LI
Sbjct: 235 FHEVLDLLDDRIAKTNR-RVWISYILIKDVNDSTDHAEALCDHIIKRPPSVRYLYNICLI 293
Query: 317 PFNPWPGC--EYLCSD-QKDIVTFSECIKRSGYSSPIRT 352
P+N E+ D ++ I F + +++ S R
Sbjct: 294 PYNKAKNVCDEFQRLDEEEKIRQFEKILRKHRISFFYRY 332
>gi|323456324|gb|EGB12191.1| hypothetical protein AURANDRAFT_5797 [Aureococcus anophagefferens]
Length = 234
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 22/247 (8%)
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C FC T LVR LTA+EIL Q +A + + ++NIV MGM
Sbjct: 1 CRFCATARMGLVRQLTADEILAQFAIAARVARESDAMP------------PLTNIVFMGM 48
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
G+ N D+VK + + D ++ +IT+ST G P + MLA S+HA
Sbjct: 49 GDAGRNVDHVKAAATSLVDGDKFRMARSKITISTVGPSPEAFAALADADGMLAWSIHAAD 108
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKI 305
DLR LVP + ++PL L ARR + +++ +NDS DA L +
Sbjct: 109 EDLRRKLVP-SSRHPLPELRRGLIDALEARPARRRTLMLAATLIRDVNDSDDDAAKLAEF 167
Query: 306 LKGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPRGLDI 358
+ I ++LIP NP ++ + ++ ++ I+ R RG D
Sbjct: 168 IGPIVDAAGKCNVDLIPCNPTDHTDFESPSTERVLAYAAKIRELEPRVHVATRLQRGDDE 227
Query: 359 LAACGQL 365
AACGQL
Sbjct: 228 SAACGQL 234
>gi|294670880|ref|ZP_06735736.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307367|gb|EFE48610.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 120
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 66/116 (56%)
Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ ACR Y + +TFEYVML GIND A L+ +++ +P K NLIPFNP+P Y
Sbjct: 1 MAACRRYLVKAPRDFVTFEYVMLDGINDKAEHARELLALVRDVPCKFNLIPFNPFPNSGY 60
Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382
S ++I F + ++++G +R RG DI AACGQL + + ++ Q+
Sbjct: 61 ERSSSENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQLAGQVQDKTRRQQKWHQL 116
>gi|223993285|ref|XP_002286326.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977641|gb|EED95967.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 438
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 88/317 (27%), Positives = 129/317 (40%), Gaps = 44/317 (13%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--TLCVSSQVGCSLTCSFC 131
+ K+S DGT K LL+ +E+E+V IP +G TLCVS
Sbjct: 149 SLSHMKVSSDGTTKLLLKMVK----DGLEVESVIIPWMDKGFSTLCVSW----------- 193
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
A + + VL + + NIV MGMGEP
Sbjct: 194 -----------AAGKDVHSVLPDMYYASKICRVVESIPGNENKALPPVDNIVFMGMGEPA 242
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
N D V ++++ D + +IT+ST P+ LA S+HAV + LR
Sbjct: 243 DNADAVVRAVNTLVDRRMFGVGQSKITISTVAPDPSAFATLGSAPAALAWSVHAVDDSLR 302
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNA--RRITFEYVMLKGINDSPRDALNLIKI---- 305
LVP KY +E L L + RR E ++K +NDSP DA L +
Sbjct: 303 RQLVP-TTKYSMEELRAGLVKALSLRSNKLRRTMLEVALMKDVNDSPDDARLLSEFAMSI 361
Query: 306 ---LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG------YSSPIRTPRGL 356
++G +NLIPFN Y + ++ F + + SG +RT RG
Sbjct: 362 MKEVRGSKIVVNLIPFNDIGHPTYRTPSMERVLEFQKIVVESGDNCDTQVLCYVRTTRGD 421
Query: 357 DILAACGQLKSLSKRIP 373
+ +ACGQL + K++
Sbjct: 422 EESSACGQLATKKKQVN 438
>gi|6434045|emb|CAB60749.1| hypothetical protein [Staphylococcus aureus]
Length = 133
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SLHA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A
Sbjct: 1 SLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARE 59
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
L ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AA
Sbjct: 60 LAHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAA 119
Query: 362 CGQLKSLSKRIP 373
CGQL++ +++
Sbjct: 120 CGQLRAKERQVE 131
>gi|221060556|ref|XP_002260923.1| radical SAM protein [Plasmodium knowlesi strain H]
gi|193810997|emb|CAQ42895.1| radical SAM protein, putative [Plasmodium knowlesi strain H]
Length = 377
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 88/307 (28%), Positives = 136/307 (44%), Gaps = 33/307 (10%)
Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-DEK 79
LLK+ + R QI +Y I M ++ +R + + FS I ++
Sbjct: 10 LLKMMDRNSFPKYRLQQILDNMYKAKITSVSKMKNVPTNIRREMKKIFSENLLSIKPLKE 69
Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
D K L + IE + S +LC+SSQ+GCS C FC TG +
Sbjct: 70 YKFDRAYKVLFECKDKEK-----IEATSLDFGSHKSLCISSQIGCSFACKFCATGQIGIK 124
Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
R L +EI Q+L + S + N+ MGMGEPL N +V +
Sbjct: 125 RQLELDEITDQLLYFQ------------------SKNENVRNVSFMGMGEPLANP-HVFE 165
Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
S+ ++ S S RRI +ST G +P I ++ + V L+ SLH+ ++ R+ LVPIN
Sbjct: 166 SIKFFNNVNLFSLSSRRINISTVGLLPGIKKLNDLHPQVNLSFSLHSPFSEERDKLVPIN 225
Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AK 312
+ +P ++D + RR+ Y++LK +NDS A L + P
Sbjct: 226 KLFPFHEVLDLLDSRIART-GRRVWISYILLKDVNDSKDHAEALCNHIVQRPRAVRYLYN 284
Query: 313 INLIPFN 319
+ LIP+N
Sbjct: 285 VCLIPYN 291
>gi|302841922|ref|XP_002952505.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f.
nagariensis]
gi|300262144|gb|EFJ46352.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f.
nagariensis]
Length = 368
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 89/360 (24%), Positives = 129/360 (35%), Gaps = 141/360 (39%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L + ELEE + +G P + R Q+++W+Y
Sbjct: 101 LKNLTLPELEEWCISVGEPAK----RAKQLYRWLYGNR---------------------- 134
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
KW+ + G P + ++VGC++ C
Sbjct: 135 ------------------KWIRNL-DQADGDPQAFSAAFK-----------AKVGCAMNC 164
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
FCYTG L+ NL+ +IL QV+ AR L + SV I+NIV MGMG
Sbjct: 165 QFCYTGRMGLLGNLSTAQILEQVVEARRYLAE------------QSVHIPIANIVFMGMG 212
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
EPL N+D V ++
Sbjct: 213 EPLHNYDAVMAAIE---------------------------------------------- 226
Query: 249 DLRNILVPINRKYPLEMLIDACRH---YPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+R+ +VP NR+YPLE L+ R Y + EYV+L G+NDS DA L+ +
Sbjct: 227 -VRDWIVPTNRRYPLEQLLGVLREAFPYDKRKGDNFVVIEYVLLAGVNDSTEDAKRLLNL 285
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I +NLI FNP G ++ S +G + +AACGQL
Sbjct: 286 TNDIYCLVNLIVFNPHTGTQFSRS-----------------------SKGDEQMAACGQL 322
>gi|330894490|gb|EGH27151.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020]
Length = 131
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L
Sbjct: 12 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 67
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+
Sbjct: 68 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 122
Query: 126 LTCSFCYTG 134
L CSFC TG
Sbjct: 123 LDCSFCSTG 131
>gi|255573175|ref|XP_002527517.1| catalytic, putative [Ricinus communis]
gi|223533157|gb|EEF34915.1| catalytic, putative [Ricinus communis]
Length = 337
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 87/314 (27%), Positives = 143/314 (45%), Gaps = 46/314 (14%)
Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
+L+ + I V + IWK++ ++ + ++ LL F+
Sbjct: 49 FDAPDLKREFQEANISLHFVPL----IWKYVIKNPNCEWDQIPNLPSAAYSLLKSKFTTF 104
Query: 72 YPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------------SRGTL 116
+ + S T K L++ +E V + R TL
Sbjct: 105 TSTLHSVIESSDGVTTKLLIKLQ-----NGAFVEAVIMRYDTRLGNYGGKPRPGGPRSTL 159
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+SSQVGC + C FC TG+ NL++ EI+ Q++ A L
Sbjct: 160 CISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHATQL------------------- 200
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
+I N+V MGMGEPL N+ + +++ + S S ++IT+ST G + I ++ +
Sbjct: 201 SQIRNVVFMGMGEPLNNYTALVEAIRVMLGSP-FQLSPKKITVSTVGVIHAINKLQRDLP 259
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
G+ LA+SLHA D+R ++P R +PLE L+DA + Y S ++I EY+ML G+ND
Sbjct: 260 GLNLAVSLHAPVQDIRCHIMPAARAFPLEKLMDALQVYQKNS-QQKIFIEYIMLDGVNDE 318
Query: 296 PRDALNLIKILKGI 309
+ A L K+L+
Sbjct: 319 EQHAHQLGKLLEAF 332
>gi|299116401|emb|CBN74666.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 598
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 92/315 (29%), Positives = 150/315 (47%), Gaps = 57/315 (18%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV--RGIRDFQG----------- 52
K L G++ E ++ + ++G R + W+Y R IRD
Sbjct: 92 KVMLKGLLFSETQQLMERLGEKAG----RAEVLAGWLYHDRRLIRDIAETAGGAGSAEPG 147
Query: 53 --MSD---------------ISQEVRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLRFPA 94
++ I ++ R + + + E+ D +++ DGTRK + +
Sbjct: 148 GDATNSNTNRSGSLVSSKSRIGKKTRDAVREVATADGGLELEDVQLAADGTRKLVSVLTS 207
Query: 95 RCIGGPVEIETVYIPE------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
G ++ETV IP + R T+CVSSQVGC++ C FC+TG L+ NL A +I+
Sbjct: 208 G-EGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMNCQFCFTGRLGLMANLQAAQIV 266
Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
QVL+A+ L ++ +V MGMGEP N+D V +++ I +D
Sbjct: 267 EQVLVAKRYLETVGDPS------------PVTGVVFMGMGEPFDNYDRVMRAVKILTDPR 314
Query: 209 -GLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPLEM 265
G+ +T+ST G VP I R ++ LAISLH+V +++R+ L+P+NR+YPLE
Sbjct: 315 AGVRLKASSVTVSTVGLVPQIERFCKDPANGASLAISLHSVVDEVRDKLIPVNRRYPLEQ 374
Query: 266 LIDACRHYPGLSNAR 280
L + R + S+
Sbjct: 375 LSETLRTHFPRSSKP 389
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
+ EY +L G+NDS DA L + L+G+ +NLI FN G + S + F +
Sbjct: 486 LAVEYTLLGGVNDSLGDAGRLAEWLEGVACVVNLITFNAHAGTPFSPSSPEAAEAFRRAL 545
Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLS-----KRIPK 374
G R RG D +AACGQL S R K
Sbjct: 546 AARGQLCTFRDSRGDDGMAACGQLGGESMAGGGDRARK 583
>gi|225456810|ref|XP_002275716.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 198
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-----VGEEIGVMLAISLHAVSNDL 250
+L GL+ + +SG + R E LA+SL+A +N++
Sbjct: 2 AFINTLEQCVSVAGLAIKASTGRIESSGMGSTMWRNKLKHFLRESNCALAVSLNATTNEV 61
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
RN ++PINRKY L +L+ R + ++ FEYVML G+NDS DA LI +++GIP
Sbjct: 62 RNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIP 121
Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
K+NLI FNP G ++ + ++ I+ F + +G +R RG D +AACGQL
Sbjct: 122 CKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQL 176
>gi|317488030|ref|ZP_07946611.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA]
gi|316912860|gb|EFV34388.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA]
Length = 195
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 2/188 (1%)
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI- 235
+K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + ++ EE
Sbjct: 9 QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHL 68
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+ L ISLHA + RN ++P Y +E ++ Y N ++ F Y++L GIND
Sbjct: 69 KIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDR 127
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
D L K KG IN++ +NP + ++++V F ++++G +R G
Sbjct: 128 SSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHG 187
Query: 356 LDILAACG 363
+I AACG
Sbjct: 188 REIKAACG 195
>gi|222872785|gb|EEF09916.1| predicted protein [Populus trichocarpa]
Length = 302
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 72/119 (60%), Positives = 94/119 (78%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
++K+ LIG+ REE+ +AL IG+P+R V MR Q+W W+YVRG+ DF M +IS+E+R
Sbjct: 184 TVEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRA 243
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L++HF+I PEIV+E+IS DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLC+SSQ
Sbjct: 244 KLDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQ 302
>gi|225849839|ref|YP_002730073.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
gi|225646250|gb|ACO04436.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
Length = 271
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 40/270 (14%)
Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
TV TLCVSSQ+GC + CSFC +G L+RNL+ +EI+ Q +A
Sbjct: 24 TVESVYYRGDTLCVSSQLGCPVRCSFCASGMNGLIRNLSYDEIIDQYRIA---------- 73
Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
S G +I NI G+GEPL N++NVKK+ D + + T+GF
Sbjct: 74 --------VSEGMEIKNIAFAGIGEPLLNWENVKKAFYHFKD------IGLKASFYTTGF 119
Query: 225 V-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL---SNAR 280
N + E +++SLHAV+++ R L+P + PL+ ++D + + +
Sbjct: 120 PLKNFKELLELPHNGVSLSLHAVTDEKRKQLIPYGQ--PLDQILDVFKDHLSKLSRRKRK 177
Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT-FSE 339
+ Y+++ G+NDS + L +I + + ++L+ +N G +Y + ++ F +
Sbjct: 178 MYSIAYLLIGGVNDSEEEIQKLSQIARDLQVGVSLLKYNEIDGIDYRSTSDEEYERVFLQ 237
Query: 340 CIKRSGYSSPI----RTPRGLDILAACGQL 365
++ +G + RT + I CG L
Sbjct: 238 -LRENGIRVTLSNRYRTRK---I-GGCGTL 262
>gi|15606673|ref|NP_214053.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5]
gi|2983905|gb|AAC07456.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5]
Length = 270
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 64/326 (19%)
Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115
+S+ +R LN F +E+V+ T
Sbjct: 3 LSKVLRSDLNTLFLFEL-------------------------EDGYTVESVFYR---GDT 34
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LCVS+QVGC + C+FC +G L RNL+AEEI Q L +
Sbjct: 35 LCVSTQVGCPVRCTFCASGKNGLFRNLSAEEIYNQYELLKDR------------------ 76
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEE 234
I I + G+GEPL N+ NVK++ GL +++ T+GF ++ +
Sbjct: 77 -YPIKRIAVAGIGEPLSNWRNVKEAFEKFK-KEGL-----KVSFYTTGFPTKHLRELLHL 129
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARRITFEYVMLKG 291
+ ISLH+++++ R L+P K LE +I ++++ Y++LK
Sbjct: 130 PHSGVTISLHSLNDETRKYLMPHAGK--LEEVIKVLEEELPKLSSKKRKKVSLAYILLKD 187
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC-SDQKDIVTFSECIKRSGYSSPI 350
+NDS + L ++ K + I L+ +N E+ S+++ F ++ G +
Sbjct: 188 VNDSQEELEKLAELAKRLGVSITLLYYNKT--FEFEPVSEKEYEEAFL-FLRSKGVRVTL 244
Query: 351 RTPRGLDILAACGQL-KSLSKRIPKV 375
T D L CG L + +K + KV
Sbjct: 245 STRFRKDKLGGCGTLVVNRNKELTKV 270
>gi|307108510|gb|EFN56750.1| hypothetical protein CHLNCDRAFT_22096 [Chlorella variabilis]
Length = 204
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 23/175 (13%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+IT+ST G +P + R E ++A+SLHA ++++R+ +VP+NR+ L+ LI+
Sbjct: 1 QITVSTVGLIPEMRRFSRESRAVMAVSLHATTDEVRDWIVPVNRREGLQALIECMEELFP 60
Query: 276 LS-----NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
S + + EY+ML+G+NDS DA L+++ + I KINLI FNP G + S
Sbjct: 61 KSSAAPRHGHHVLIEYIMLRGVNDSDDDARRLVQLTQSIRCKINLIVFNPHAGTSFQPST 120
Query: 331 QKDIVTFSECIKRSG------------------YSSPIRTPRGLDILAACGQLKS 367
+ + F + ++ + + +R RG D +AACGQL S
Sbjct: 121 PERVYAFRSILIQARRPQQHTHSLTATHTQPHCHVATVRDSRGDDQMAACGQLGS 175
>gi|294944627|ref|XP_002784350.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239897384|gb|EER16146.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 308
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 28/266 (10%)
Query: 42 IYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
++ +G+ ++ + Q VR L S+ ++ E+ S D K+LL
Sbjct: 60 VFKKGVSSPSAINRVPQGVRDALQARLGESLSPLRVL-EQGSADFAHKFLLE----SRQD 114
Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
+IE V + +S +LCVSSQ+GC+ CSFC TG L R L+ +EI+ QVL+ R
Sbjct: 115 GGKIEAVGLDFRSHTSLCVSSQIGCAFNCSFCATGKLGLKRQLSVDEIVGQVLMFR---- 170
Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
+ G + ++ MGMGEPL N + ++S+ +D + S RR+++
Sbjct: 171 --------------ATGNVVDSVSFMGMGEPLANPK-IFNAISVMTDPQLVGLSTRRMSI 215
Query: 220 STSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
ST G +P + ++ E +A SLH+ + R ++PI R YP + D +
Sbjct: 216 STIGIIPGLVKLTELHPQANVAYSLHSPFPEEREKIMPIQRVYPFAKVFDVLDDRIKRT- 274
Query: 279 ARRITFEYVMLKGINDSPRDALNLIK 304
RRI Y++LKGINDS R A K
Sbjct: 275 GRRIWISYLLLKGINDSERYATYEAK 300
>gi|71029582|ref|XP_764434.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351388|gb|EAN32151.1| hypothetical protein, conserved [Theileria parva]
Length = 235
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 110/231 (47%), Gaps = 24/231 (10%)
Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90
+ R SQI+ IY +F M + + +R L+ +F+ + S K +L
Sbjct: 20 PKYRLSQIFNSIYRNKTSNFLSMYHLPKILRDGLHDNFNGSLLSLTPVSESSCDRAKKVL 79
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
IE V + + +LC+SSQVGCS CSFC TG L RNLT +EI Q
Sbjct: 80 F----QNQDGSRIEAVLLHFNTHKSLCISSQVGCSFACSFCATGKIGLKRNLTMDEITDQ 135
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
VL + L G KI +I MGMGEPL N NV +++S+ +D
Sbjct: 136 VLYFQQL------------------GHKIDSISFMGMGEPLSNP-NVFRAISVLTDKRYF 176
Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRK 260
S RRI +ST G +P I ++ +E LA SLH+ + RN +VPI
Sbjct: 177 GLSPRRINVSTVGILPGIKKLNKEFPYVNLAYSLHSPFTEERNEMVPIKMT 227
>gi|294955468|ref|XP_002788520.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239904061|gb|EER20316.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 242
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
+R IT+ST G +P I + + V LA+SLHA + LR +VP + + ++ L+
Sbjct: 5 FGIPQRCITVSTVGVIPRIRSLAHDASGVKLALSLHAPTQALREKIVPSAKAWSIDELMA 64
Query: 269 ACRHYPGLSN--------------ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
A Y S + EYV+++ +ND+ A L ++K A +N
Sbjct: 65 AVDEYSEASRVAGRPDGSGGGGRKKGSVMIEYVVIRDVNDTEECAHQLGVLMKNRKAVVN 124
Query: 315 LIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKRI 372
IP+N G + + + +K G R G DI AACGQL R+
Sbjct: 125 FIPYNAVDNGSNFEPPLESSVTRMVSILKDVYGVRVYYRRHHGRDIDAACGQLAKKRPRM 184
>gi|270593980|ref|ZP_06221492.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212]
gi|270318367|gb|EFA29514.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212]
Length = 129
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 266 LIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
+ID+ Y +SN ++T EYVML +ND A L ++LK P KINLIP+NP+P
Sbjct: 1 MIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQLAEVLKNTPCKINLIPWNPFPE 60
Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382
Y S I F + + G++ IR RG DI AACGQL K + Q
Sbjct: 61 APYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVIDRTKRTAMKRQF 119
>gi|300858725|ref|YP_003783708.1| hypothetical protein cpfrc_01308 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686179|gb|ADK29101.1| hypothetical protein cpfrc_01308 [Corynebacterium
pseudotuberculosis FRC41]
Length = 213
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
+ + EE AL ++G+P + R +QI + Y R D + M+D+ VR
Sbjct: 46 SMPPKHFADYTVEERISALKELGLP----KFRANQIARHYYGRLEADPRTMTDLPAGVRE 101
Query: 63 LLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
+ + F ++ I + T+K L + +E+V + +R TLC+SSQ
Sbjct: 102 KVQEKLFPVLMNPIRAIETDAGETQKTLWQLH-----DGTLLESVLMRYPNRATLCISSQ 156
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC + C FC TG L RNL+ EI+ QV A + + + G ++SN
Sbjct: 157 AGCGMACPFCATGQGGLDRNLSTAEIVDQVRAASATMN--------------AEGGRLSN 202
Query: 182 IVMMGMG 188
IV MGMG
Sbjct: 203 IVFMGMG 209
>gi|330975901|gb|EGH75967.1| hypothetical protein PSYAP_04494 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 120
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
+T EY MLK IND A+ +I++LK P KINLIPFNP+P Y I F + +
Sbjct: 3 LTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLL 62
Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQ 378
++GY+ +RT RG DI AACGQL R + R
Sbjct: 63 HQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSERY 100
>gi|68074255|ref|XP_679042.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499685|emb|CAH98368.1| conserved hypothetical protein [Plasmodium berghei]
Length = 308
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 92/303 (30%), Positives = 136/303 (44%), Gaps = 35/303 (11%)
Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS--IIYPEIVDEKISCD 83
R+ + R QI IY I + M +I ++R L FS I+ + + E
Sbjct: 15 ERNRYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKNLFSENILSIKPIKEDKYDR 74
Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
K L + IE + S +LC+SSQ+GCS C FC TG + R L
Sbjct: 75 -AYKILFECKDKEK-----IEATALDFGSHTSLCISSQIGCSFACKFCATGQIGIKRQLE 128
Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
+EI Q+L + S I N+ MGMGEPL N NV +++
Sbjct: 129 LDEITDQLLYFQ------------------SKNVNIKNVSFMGMGEPLANP-NVFEAIRF 169
Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYP 262
+ S S S RRI +ST G +P I ++ E V L+ SLH+ + R+ LVPIN+ +P
Sbjct: 170 FNSSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPINKLFP 229
Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AKINLI 316
++D +N R+ Y+++K +NDS A L + + P I LI
Sbjct: 230 FHEVLDLLDDRIEKTNR-RVWISYILIKDVNDSTDHAEALCEHIIKRPPSVRYLYNICLI 288
Query: 317 PFN 319
P+N
Sbjct: 289 PYN 291
>gi|163785797|ref|ZP_02180287.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1]
gi|159878935|gb|EDP72949.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1]
Length = 265
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 43/283 (15%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
+ IE+V+ TLCVSSQVGC + C+FC +G + L+RNL+ EEI+ Q
Sbjct: 8 KLYEFETKDSYTIESVFYR---GNTLCVSSQVGCPVECAFCASGMKGLIRNLSFEEIIDQ 64
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
S I+NI G+GEPL N+DNVKK+ +
Sbjct: 65 Y--------------------ENSDKENITNITFAGIGEPLLNWDNVKKAFFYFKE---- 100
Query: 211 SFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP--LEMLI 267
+++ T+GF N + + +S+HAV+ + R L+P + + +E
Sbjct: 101 --KGLKVSFYTTGFPVKNFKELLNLPHNGITLSIHAVNEEKRKKLIPKSVDFDKLIETFK 158
Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
+ + Y+++K +NDS + L +I K + ++L+ FN G +
Sbjct: 159 QHLDK-LSKRKKKNYSIAYLLIKNVNDSKEELKKLAEIAKYLQVGVSLLKFNEIEGINFK 217
Query: 328 -CSDQKDIVTFSECIKRSGYSSPI----RTPRGLDILAACGQL 365
D++ F +K G + RT + I CG L
Sbjct: 218 TTPDEEYEKAFL-FLKNEGVKVTLSNKYRTRK---I-GGCGTL 255
>gi|212634295|ref|YP_002310820.1| hypothetical protein swp_1447 [Shewanella piezotolerans WP3]
gi|212555779|gb|ACJ28233.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 137
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
+ R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L + I
Sbjct: 2 DLDRKSMRALFADMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKALRAKLARKCEI 57
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
+ P+I + S DGT K+ + G E+ETVYIPE R TLCVSSQVGC+L C+F
Sbjct: 58 VAPKIASYQKSADGTIKFAIDV-----GNGQEVETVYIPEDDRATLCVSSQVGCALECTF 112
Query: 131 CYTGTQKLVRNL 142
C TG Q R L
Sbjct: 113 CSTGAQGFNRKL 124
>gi|302854556|ref|XP_002958785.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f.
nagariensis]
gi|300255893|gb|EFJ40175.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f.
nagariensis]
Length = 993
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/241 (30%), Positives = 106/241 (43%), Gaps = 62/241 (25%)
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
GT L NL A EI+ Q++ AR++ I NIV MGMGEPL N
Sbjct: 773 GTMGLKGNLNAGEIVEQLMHARAVT-------------------PIRNIVFMGMGEPLNN 813
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
++ V+ ++++ +DS +R +T+ST G VP I ++ ++ GV LA+SLHA + +LR
Sbjct: 814 YEAVRSAVAMMTDSRFFGLRRRHVTVSTVGVVPRIKQLAQDLPGVSLALSLHAPTQELRA 873
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
+VP R Y L +L+DA
Sbjct: 874 KIVPSARAYKLPVLMDAGDD--------------------------------------VV 895
Query: 313 INLIPFNPW---PGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSL 368
INLIP+NP G + + + F ++ G + IR G DI ACGQL
Sbjct: 896 INLIPWNPIYQPEGPFFNAPAEGSVAAFQGVLRHTYGLHTTIRQEMGQDISGACGQLVIE 955
Query: 369 S 369
S
Sbjct: 956 S 956
>gi|188996350|ref|YP_001930601.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931417|gb|ACD66047.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 269
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 44/283 (15%)
Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
IE+V R TLCVSSQVGCS+ C+FC +G L+RNL+++EI+ Q
Sbjct: 14 LLEIKTDDGYTIESV----HYRTTLCVSSQVGCSVRCAFCASGLNGLIRNLSSQEIINQF 69
Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
+A+ G +I+NI G+GEPL NF+NVK++
Sbjct: 70 EIAKD------------------QGFEITNIAFAGIGEPLLNFENVKQAFDYFKS----- 106
Query: 212 FSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
+++ T+GF + L +SLH+V + R L+P + +E LI
Sbjct: 107 -IGLKVSFYTTGFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIP--NSHSIEELIQVF 163
Query: 271 RHYPGLSNARR---ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
++ ++R+ + Y+++ G NDS + L I K + ++L+ +N +
Sbjct: 164 ENHLKTLSSRKRKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVSLLKYNEIESLPFK 223
Query: 328 -CSDQKDIVTFSECIKRSGYSSPI----RTPRGLDILAACGQL 365
D++ F + +K G + + RT + I CG L
Sbjct: 224 TTPDEEYEKAFLK-LKSHGVRTTLSNRYRTRK---I-GGCGTL 261
>gi|313625007|gb|EFR94900.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
FSL J1-023]
Length = 130
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRNL 142
C++ C+FC +G K R+L
Sbjct: 112 CNIGCTFCASGLLKKSRDL 130
>gi|313620453|gb|EFR91838.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
FSL S4-378]
Length = 129
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVRN 141
C++ C+FC +G K R+
Sbjct: 112 CNIGCTFCASGLLKKSRD 129
>gi|313610614|gb|EFR85708.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes FSL F2-208]
Length = 129
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESADGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVR 140
C++ C+FC +G K R
Sbjct: 112 CNIGCTFCASGLLKKSR 128
>gi|298706960|emb|CBJ29779.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 531
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 84/214 (39%), Positives = 114/214 (53%), Gaps = 22/214 (10%)
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL + F+++ +V+ + S DGT K L+R + V I+ + R TLCVSSQV
Sbjct: 71 LLRRKFAVLTSTVVETQRSEDGTVKLLVRLQDGQMVETVIIK--HNGTHPRTTLCVSSQV 128
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C+FC TGT L +LTA EIL QVL A + I N+
Sbjct: 129 GCQMACTFCATGTMGLKGDLTAGEILEQVLHASRV-------------------SPIRNV 169
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
V MGMGEPL N+D V S+ +DS S R ITLST G VP + ++ + LA+
Sbjct: 170 VFMGMGEPLNNYDAVLASIRGMADSRMFKLSPRHITLSTVGVVPRMKQLTIDAPETQLAL 229
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
SLHA + +LRN +VP R Y L+ L+DA +
Sbjct: 230 SLHAPNQELRNRIVPSARAYRLDKLMDALDGHLR 263
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW--PGCE-YLCSDQKDIV 335
RR EYVML G+ND+ L ++LKG +NLIP+NP PG E + ++ +
Sbjct: 336 GRRALIEYVMLAGVNDTEECGRELGELLKGRNVLVNLIPYNPTYAPGSEEFKEPTEEALQ 395
Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
F + G IR G DI ACGQL
Sbjct: 396 KFRAIVHEHGLLVTIRRHHGRDIDGACGQLAVKV 429
>gi|315281046|ref|ZP_07869770.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
FSL S4-120]
gi|313615310|gb|EFR88731.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
FSL S4-120]
Length = 128
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L +F + E + S DGT K+L + IETV + ++ ++CV++QVG
Sbjct: 57 LTANFVMNTLEEQVVQESADGTTKYLFKLS-----DGNLIETVMMKQEYGLSVCVTTQVG 111
Query: 124 CSLTCSFCYTGTQKLVR 140
C++ C+FC +G K R
Sbjct: 112 CNIGCTFCASGLLKKSR 128
>gi|237756412|ref|ZP_04584954.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691428|gb|EEP60494.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5]
Length = 269
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 44/284 (15%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
IE+V R TLCVSSQVGCS+ C+FC +G L+RNL+++EI+ Q
Sbjct: 13 SLLEIKTDDGYTIESV----HYRTTLCVSSQVGCSVRCAFCASGLNGLMRNLSSQEIINQ 68
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
+A+ G +I+NI G+GEPL NF+NVK++
Sbjct: 69 YEIAKD------------------KGFEITNIAFAGIGEPLLNFENVKQAFDYFKS---- 106
Query: 211 SFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
+++ T+GF + L +SLH+V + R L+P + +E LI
Sbjct: 107 --IGLKVSFYTTGFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIP--NSHSIEELIQV 162
Query: 270 CRHYPGLSNARR---ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
++ ++R+ + Y+++ G NDS + L I K + + L+ +N +
Sbjct: 163 FENHLKTLSSRKRKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVFLLKYNEIESLPF 222
Query: 327 L-CSDQKDIVTFSECIKRSGYSSPI----RTPRGLDILAACGQL 365
D++ F + +K +G + + RT + I CG L
Sbjct: 223 KTTPDEEYEKAFLK-LKSNGVRTTLSNRYRTRK---I-GGCGTL 261
>gi|225848095|ref|YP_002728258.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643916|gb|ACN98966.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 276
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 71/283 (25%), Positives = 115/283 (40%), Gaps = 42/283 (14%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
IE+V R TLCVSSQVGCS+ CSFC +G L RNL+ +EI+ Q
Sbjct: 13 TLFEIKTDDGYTIESV----HYRKTLCVSSQVGCSIKCSFCASGLNGLTRNLSFDEIINQ 68
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
L+ + G +I +I G+GEPL N++NVK++
Sbjct: 69 YLMVKD------------------KGYEIESIAFAGIGEPLLNWENVKQAFDYFKS---- 106
Query: 211 SFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
++ T+GF N ++ + +SLH+V + R L+P + + LI
Sbjct: 107 --QGLSVSFYTTGFPISNFKQLLALNHDGVNLSLHSVFEEKRKSLIP--NSHTISQLIQV 162
Query: 270 CRHYPG---LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ + + Y+++ G NDS + L +I K + ++L+ +N Y
Sbjct: 163 FKDHLQQLSNRKKKLYNIAYILIYGENDSYEEIDKLGEIAKELGIGVSLLKYNEIEFFPY 222
Query: 327 LCSDQKDIVTFSECIKRSGYSSPI----RTPRGLDILAACGQL 365
++ G + RT + I CG L
Sbjct: 223 KSVPDDRYEELFLRLREKGIRVTLSNKYRTRK---I-GGCGTL 261
>gi|297733650|emb|CBI14897.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/111 (42%), Positives = 68/111 (61%)
Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
+PINRKY L +L+ R + ++ FEYVML G+NDS DA LI +++GIP K+N
Sbjct: 1 MPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVN 60
Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
LI FNP G ++ + ++ I+ F + +G +R RG D +AACGQL
Sbjct: 61 LISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQL 111
>gi|190150593|ref|YP_001969118.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|189915724|gb|ACE61976.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
Length = 110
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
+T EYV+L +ND A L ++LK P KINLIP+NP+P Y S + F + +
Sbjct: 1 MTIEYVLLDHVNDGTEHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTL 60
Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382
G++ +R RG DI AACGQL K ++ +
Sbjct: 61 MEYGFTVIVRKTRGDDIDAACGQLAGDVIDRTKRTMEKRKF 101
>gi|163781579|ref|ZP_02176579.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882799|gb|EDP76303.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1]
Length = 274
Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 38/294 (12%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
R + +E V+ TLCVS+QVGC + C FC +G + L+RNL+ EEI+ Q
Sbjct: 13 RLFIFELEDGFAVEAVHYR---GDTLCVSTQVGCHVRCGFCASGRRGLIRNLSEEEIVSQ 69
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
L R ++ I + G+GEPL N+D+V+ + +
Sbjct: 70 YELVR-------------------PKFEVRRIAVAGIGEPLANWDSVRGAFYRFKE---- 106
Query: 211 SFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
R++ T+G+ N+ + +++S+H++ R L+P L LID
Sbjct: 107 --LSLRVSFYTTGYPLKNLRELLHMPHGGVSLSIHSLDRSTRKELMPYAG--DLGRLIDF 162
Query: 270 CR-HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
R P L+ +R ++ Y+++KG+NDS + + L K+ + + + L+ +N
Sbjct: 163 LRGELPSLTGKKRKKVSLAYLLIKGVNDSEDELIELGKLARELGVGVTLLYYNQVSSYP- 221
Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380
+ ++ F ++ G + D + CG L R + QE+
Sbjct: 222 QLTPEEYERAFL-LLRSMGVKVTLSNRFRKDKIGGCGTL--TVDRNADIKSQEV 272
>gi|325295135|ref|YP_004281649.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065583|gb|ADY73590.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 270
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 67/280 (23%), Positives = 122/280 (43%), Gaps = 36/280 (12%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
+ ++E+V+ + LC+S+QVGC + C FC +G++ RNLT EI+ Q
Sbjct: 13 KLFVYETDDGYKVESVFYKGER---LCISTQVGCPIGCIFCASGSKGFFRNLTFAEIVTQ 69
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
L R +L I I + G+GEP N NV+K+++ + GL
Sbjct: 70 YELLRDIL-------------------PIKGIAIAGIGEPALNISNVEKAVNYFR-NEGL 109
Query: 211 SFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
++T+ST+G+ N ++ L +S+H + N R + +K LE L++A
Sbjct: 110 -----KVTISTAGYPLENFKKLIRLNHNGLTLSVHGILNKTREKI--FKKKENLEELLNA 162
Query: 270 CRHYP---GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ S ++ Y+++K +ND + L ++ K + L+ +N G +
Sbjct: 163 VDEHLSESSSSRRKKFQLGYLLIKDLNDDLENLRLLGELAKKYRFTVMLMMYNKVDGFDL 222
Query: 327 LC-SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ + F ++ G + +D L CG L
Sbjct: 223 EPVTKDEYEKAFL-FLREMGVRVTLSNRFRIDKLGGCGTL 261
>gi|319789396|ref|YP_004151029.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
gi|317113898|gb|ADU96388.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
Length = 271
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 36/280 (12%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
R +E+V+ + LCVSSQVGC + C+FC +G + L RNL+AEEI Q
Sbjct: 13 RLFIYETADGYRVESVFYKGER---LCVSSQVGCPVGCAFCASGLKGLKRNLSAEEIYAQ 69
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
L + L I I + G+GEP N D+V +++ GL
Sbjct: 70 YSLLKGEL-------------------PIRGIAIAGIGEPALNADSVVEAIGRFK-KEGL 109
Query: 211 SFSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
++T+S++G + ++ E L IS+HAV +R L K P+E +++
Sbjct: 110 -----KVTVSSTGCDLEGFRKLVEAPHNGLTISVHAVKPHIRERL--FKLKQPIEKVLEV 162
Query: 270 CRHYPGLSNARRI---TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ S++ R Y+++KG+ND L ++ K + L+ +N G +
Sbjct: 163 VEEHLERSSSSRRKRFQLGYLLIKGVNDDEESLKLLAELAKRHRFTVMLMAYNEVEGLPF 222
Query: 327 LC-SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
S+++ F + ++ G + D L CG L
Sbjct: 223 KGLSEEEYEKAFLK-LRELGVRVTLSNRFRRDKLGGCGTL 261
>gi|288817723|ref|YP_003432070.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus
TK-6]
gi|288787122|dbj|BAI68869.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus
TK-6]
gi|308751322|gb|ADO44805.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
Length = 264
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 36/279 (12%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
R + +IE V+ TLC+S+QVGC++ C FC +G+ VRNLT EEIL Q
Sbjct: 13 RLFVFELEDSNKIEAVFYR---GDTLCISTQVGCAIRCPFCLSGSAGFVRNLTYEEILAQ 69
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
L R L I I + G+GEPL N+ +V ++ GL
Sbjct: 70 YYLLRDTL-------------------PIKRIAVAGIGEPLMNYSHVIRAFWKFK-EEGL 109
Query: 211 SFSKRRITLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
+++ T+GF ++ + L IS+H+ ++ R L+P L LID
Sbjct: 110 -----KVSFYTTGFPHIHLRELIHIPHNGLTISIHSTKSEKRRKLIPHGG--DLNALIDM 162
Query: 270 CRHYP---GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
R ++++ Y++LKG+NDS D K+++ + L+ +N G
Sbjct: 163 LREELPRMSKRKRKKVSLAYLLLKGVNDSYEDLEEFAKLVRDLGVSATLLYYNST-GFFE 221
Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
S + F ++ G + T D L CG L
Sbjct: 222 TMSKSEYEERFL-YLRGYGIRVSLSTRFRKDSLGGCGTL 259
>gi|295113298|emb|CBL31935.1| hypothetical protein [Enterococcus sp. 7L76]
Length = 114
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC 324
+ A Y +N R+TFEY+ML +ND P A L +L K + +NLIP+NP
Sbjct: 1 MAAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEH 59
Query: 325 E-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
+ Y S ++ ++ F + +K++G + IR G DI AACGQL+S + KV Q
Sbjct: 60 DQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ 114
>gi|146319329|ref|YP_001199041.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33]
gi|145690135|gb|ABP90641.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33]
Length = 140
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AK 312
+ INRK+P+E+L +A Y ++N R+TFEY+ML +ND A L + K I +
Sbjct: 1 MRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSY 59
Query: 313 INLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
INLIP+NP + Y S ++ + F + +K++G + +R G DI AACGQL+S + +
Sbjct: 60 INLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTLK 119
Query: 372 IPK 374
+
Sbjct: 120 KDR 122
>gi|289548559|ref|YP_003473547.1| radical SAM protein [Thermocrinis albus DSM 14484]
gi|289182176|gb|ADC89420.1| Radical SAM domain protein [Thermocrinis albus DSM 14484]
Length = 270
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 74/280 (26%), Positives = 120/280 (42%), Gaps = 37/280 (13%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
R + IE V+ TLCVS+QVGC++ C+FC +G+ L+RNL+ +EI +Q
Sbjct: 13 RLYLFQLEDGSRIEAVFYR---GDTLCVSTQVGCAVGCAFCLSGSAGLLRNLSEDEIYMQ 69
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
L + L I + G+GEPL N+ NV + GL
Sbjct: 70 YFLLKPFL-------------------PIRRVAFAGIGEPLMNYRNVLGAFERFK-REGL 109
Query: 211 SFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
+T T+G ++ + + + ISLH + LR L+P LE LI
Sbjct: 110 G-----VTFYTTGHPIKHLPSLLDLPHRGVTISLHTLDPSLRKKLLPHAG--DLEELIAL 162
Query: 270 CRHY---PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ Y +I+ Y++LKG+NDSP + +++K + L+ +N G +
Sbjct: 163 LKDYSKKISKRKKGKISLAYLLLKGVNDSPEEIKAFGRLVKELGFSATLLYYNDT-GMGF 221
Query: 327 LC-SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ ++ F ++ G + T D L CG L
Sbjct: 222 QAVTPEEYSKAFL-LLRSMGVRVTLSTRYRRDPLGGCGTL 260
>gi|15610017|ref|NP_217396.1| hypothetical protein Rv2880c [Mycobacterium tuberculosis H37Rv]
gi|148662724|ref|YP_001284247.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra]
gi|1403400|emb|CAA98356.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|148506876|gb|ABQ74685.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra]
Length = 275
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 21/182 (11%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + A+ ++G+P R Q+ Y R I D + M+D+ VR +
Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
+ G + L E+V + R T+C+SSQ GC +
Sbjct: 73 AMFPNLLTASADITCDAGQTRKTL----WRAVDGTMFESVLMRYPRRNTVCISSQAGCGM 128
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC TG L RNL+ EIL QV + L D G ++SN+V MG
Sbjct: 129 ACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMG 175
Query: 187 MG 188
MG
Sbjct: 176 MG 177
>gi|301119923|ref|XP_002907689.1| ribosomal RNA large subunit methyltransferase N, putative
[Phytophthora infestans T30-4]
gi|262106201|gb|EEY64253.1| ribosomal RNA large subunit methyltransferase N, putative
[Phytophthora infestans T30-4]
Length = 224
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 109/235 (46%), Gaps = 33/235 (14%)
Query: 3 FLKKESLI---GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
+KK +L ++ L L K + H IW+++ F + I +
Sbjct: 1 MVKKRTLSPLPAFDQKALPVFLQKHDFKELH----ALTIWRYLAQHPDATFADIPGIPKT 56
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
+R LL +HF+ + E+ S DGT K LL+ EIE V + R TLCVS
Sbjct: 57 LRTLLGEHFAHFTTSVTTEQRSADGTVKLLLKLQ-----DGHEIEAVIMRHTGRNTLCVS 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
SQVGC + C+FC TGT ++ +L + EIL Q+ A + I
Sbjct: 112 SQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVA-------------------PI 152
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
N+V MGMGEPL N+D V ++ + GL+ + ITLST G + I ++ +
Sbjct: 153 RNVVFMGMGEPLNNYDAVLAAIRAMTKVFGLA--PKYITLSTVGVIHRIRQLSRD 205
>gi|299535923|ref|ZP_07049243.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
fusiformis ZC1]
gi|298728675|gb|EFI69230.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
fusiformis ZC1]
Length = 94
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
++FEY ++ G NDS A L ++KGI +NLIP N P +Y+ + + I F + +
Sbjct: 1 MSFEYGLMSGENDSVEIAEELSALIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTL 60
Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
K++G + IR +G DI AACGQL++ +R +
Sbjct: 61 KKNGINVTIRREQGSDIAAACGQLRAQ-ERSEETR 94
>gi|149922669|ref|ZP_01911096.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1]
gi|149816466|gb|EDM75965.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1]
Length = 291
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/310 (22%), Positives = 113/310 (36%), Gaps = 31/310 (10%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
IV+E DG R++++ +E V +LCVSSQVGC++ C FC +
Sbjct: 3 RIVEEHREGDGNRRFVVGL-----DDGASVEAVLYRLD---SLCVSSQVGCAVGCPFCAS 54
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G L R L E+ QV R+ + G E + + + G+GEPL N
Sbjct: 55 GANGLDRPLRLGELTGQVEAVRAHIEATDGPEAALA---------LRRVTVSGVGEPLHN 105
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV---GEEIGVMLAISLHAVSNDL 250
+ V + + + +T S + + S+HA
Sbjct: 106 HEPVAQFVRWCRERDM----PASLTTSGGPLRRLGEWLDPDAAPPHNGITFSIHAGREAT 161
Query: 251 RNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
R VP PL L+ S R++ Y++L +ND + ++ +
Sbjct: 162 RARTVPRGPALGPLFSLLGEAIPRLSRSRKRKLALAYLLLADLNDGDEEIDAFLERAAPL 221
Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP---RGLDILAACGQLK 366
KI+L +NP P E ++ G +R R D CG L
Sbjct: 222 GVKIHLYRYNPVPTSTQAPVSDARYQAIFERVRAVGLD--VRRSSQARIED-NGGCGTLI 278
Query: 367 SLSKRIPKVP 376
+L + ++
Sbjct: 279 ALRRPERRLR 288
>gi|294942772|ref|XP_002783678.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983]
gi|239896201|gb|EER15474.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983]
Length = 188
Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--------------ARRITF 284
LA+SLHA + LR +VP + + ++ L+ A Y S +
Sbjct: 2 LALSLHAPNQALREKIVPSAKAWSIDELMAAVDEYSEASRVAGRPDGSGGGGRKKGSVMI 61
Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR 343
EYV+++ +ND+ A L ++K A +N IP+N G + + + +K
Sbjct: 62 EYVVIRDVNDTEECAHQLGVLMKNRKAVVNFIPYNAVDNGSNFEPPLESSVTRMVSILKD 121
Query: 344 -SGYSSPIRTPRGLDILAACGQLKSLSKRI 372
G R G DI AACGQL R+
Sbjct: 122 VYGVRVYYRRHHGRDIDAACGQLAKKRPRM 151
>gi|325918563|ref|ZP_08180675.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937]
gi|325535220|gb|EGD07104.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937]
Length = 126
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--------AKINLIPFNPWPGCEYLC 328
+TFEY ++KGIND P A L ++++ K+NLIPFNP+PG Y
Sbjct: 2 KKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYER 61
Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
S + +I F + + + + +R RG DI AACGQLK + + RQ
Sbjct: 62 SGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV--MDRTRRQA 110
>gi|325849044|ref|ZP_08170536.1| ribosomal RNA large subunit methyltransferase N family protein
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480289|gb|EGC83352.1| ribosomal RNA large subunit methyltransferase N family protein
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 126
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 10/131 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K+++ EELE+ L +G + R Q+++ I+V I DF M+D+S+++R L+
Sbjct: 2 KQTINDKTIEELEKIFLDLGF----KKFRAKQVFRQIHVNKINDFSKMTDLSKKMREDLD 57
Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++F ++V E S D T+K+L IE V++ +R T+C+SSQVGC
Sbjct: 58 KYFYFPKIKVVKEFKSNLDKTKKYLFEL-----DDKNIIEAVFMEYNNRNTICISSQVGC 112
Query: 125 SLTCSFCYTGT 135
+ C FC +
Sbjct: 113 RMGCKFCASTK 123
>gi|226503103|ref|NP_001141039.1| hypothetical protein LOC100273119 [Zea mays]
gi|194702344|gb|ACF85256.1| unknown [Zea mays]
Length = 194
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 14/155 (9%)
Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
G V + + R T+CVSSQVGC++ C FC+TG L ++L+ EI+ Q + AR
Sbjct: 13 LEDGSVIETVIIPCARGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFAR 72
Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
L D G I+N+V MGMGEP N DNV K+ +I D GL FS R
Sbjct: 73 RLFSDELGS--------------INNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPR 118
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDL 250
++T+STSG VP + R +E LA+SL+A ++++
Sbjct: 119 KVTVSTSGLVPQLKRFLQESNCSLAVSLNATTDEV 153
>gi|291287083|ref|YP_003503899.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
gi|290884243|gb|ADD67943.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
Length = 256
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 60/276 (21%), Positives = 106/276 (38%), Gaps = 47/276 (17%)
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
+ETVY GTLC+S+Q GC + C FC +G L RNL+++E+ QV
Sbjct: 12 DGFCLETVYY---ESGTLCISTQAGCRMACPFCASGRVGLKRNLSSDELFTQV------- 61
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
G I + + G+GEPL NF+ VK+ + + +T
Sbjct: 62 -------------ELHKGNDIKRVTLSGIGEPLDNFEVVKEFIKKS-------GYPVSVT 101
Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLS 277
S + + + + +S HA ++ R L+P + + + ++
Sbjct: 102 TS-VPDTEKLKELLKLSHNGVMLSFHAGFDETRKKLIPKACQLDEIFHAVSEVWSEISVN 160
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLCSDQKDIVT 336
+++ F Y++L GINDS + + ++L+ N G + +
Sbjct: 161 KRKKVGFNYMLLDGINDSAEELDAFAGQVTNFKEVTVHLLVCNDVSGSSFKSPS---VCV 217
Query: 337 F---SECIKRSGYSSPI----RTPRGLDILAACGQL 365
F E ++ +G + R CG L
Sbjct: 218 FTDAYELLRNNGLNVRRANNWRKS----SNGGCGTL 249
>gi|301119925|ref|XP_002907690.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106202|gb|EEY64254.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 170
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SG 345
ML G+NDS A L K+L+ +NLIP+N G ++ +DI F ++
Sbjct: 1 MLAGVNDSIETAHTLGKLLQNRSVHVNLIPYNTTDVGAQFQSPSAEDIRAFHAVLREPYN 60
Query: 346 YSSPIRTPRGLDILAACGQLKSLSK------------RIPKVPRQEMQIT 383
+ IR G DI ACGQL +K R K PR+ + +
Sbjct: 61 LKATIRENHGTDIDGACGQLALKNKPDGSRDIEDLGPRRTKAPRKTKKSS 110
>gi|218681469|ref|ZP_03529356.1| hypothetical protein RetlC8_22681 [Rhizobium etli CIAT 894]
Length = 94
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 56/73 (76%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
+K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L
Sbjct: 22 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81
Query: 65 NQHFSIIYPEIVD 77
QHF+I PEIV+
Sbjct: 82 KQHFTIARPEIVE 94
>gi|255030761|ref|ZP_05302712.1| hypothetical protein LmonL_19616 [Listeria monocytogenes LO28]
Length = 137
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 75/143 (52%), Gaps = 17/143 (11%)
Query: 45 RGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104
+ ++ F+ MS++ +E LL +F + E + S DGT K+L + IE
Sbjct: 1 KRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLS-----DGNLIE 55
Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
TV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + L
Sbjct: 56 TVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLD----- 110
Query: 165 EDIEGMVIPSVGRKISNIVMMGM 187
++ ++S++V G+
Sbjct: 111 -------GRNLEERVSHVVGNGL 126
>gi|167951358|ref|ZP_02538432.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 133
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/91 (58%), Positives = 69/91 (75%)
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+SLHA +N+LR+ LVPIN+KYPLE LI ACR + R+IT+EYVML GINDS + A
Sbjct: 1 MSLHAPTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAK 60
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
LI++L+G P+K+NLIPFNP+PG Y S +
Sbjct: 61 ALIRLLEGTPSKLNLIPFNPFPGTSYKTSPR 91
>gi|240147168|ref|ZP_04745769.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
gi|257200635|gb|EEU98919.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
Length = 67
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
+ +NLIP NP Y+ D + I+ F ++++ + IR G DI ACGQL+
Sbjct: 1 MNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGACGQLRKR 60
Query: 369 S 369
Sbjct: 61 Y 61
>gi|226323829|ref|ZP_03799347.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758]
gi|225208013|gb|EEG90367.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758]
Length = 85
Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K+ + EEL+E +L IG R+ QI+ WI+ + + DF+ M+++ + +R
Sbjct: 1 MEKKDIASYSFEELQEEMLAIG----EKGFRSRQIYSWIHEKLVDDFEEMTNLPKTLRQK 56
Query: 64 LNQHFSIIYPEIVD 77
L + I E+
Sbjct: 57 LESAYEIRRVEMEK 70
>gi|81999761|sp|Q5UP06|YR756_MIMIV RecName: Full=Uncharacterized protein R756
gi|55417366|gb|AAV51016.1| putative Fe-S-cluster redox enzyme [Acanthamoeba polyphaga
mimivirus]
Length = 298
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 35/269 (13%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+SS GC + C FC T R+++ EE Q+ S + G V
Sbjct: 37 LSSHNGCKMACKFCWLTATNQTNF-RHVSIEEYANQLDTVLSHGKEIDGENSRIVRV--- 92
Query: 175 VGRKISNIVMMGMGEPLCNFDNV------KKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
NI +M GE L N + V K L + S K ++ V
Sbjct: 93 ------NINLMSRGEALANKNLVNNYDKFHKELQYIINKYDYSEMKMNVSTIMPKVVEHK 146
Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
+ + + V + SL++ + R +P + +Y + + R + ++ I F +
Sbjct: 147 KLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRYEI--ALRKLREFQKETD-NTIAFHF 203
Query: 287 VMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPG-CEYLCSDQKDIVTFSECIK 342
+++ ND+ D ++ +I++ + K NL+ FNP P Y + + E ++
Sbjct: 204 AVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMSNYKEPSVEKLEKIYEILQ 263
Query: 343 RSGYSSPIRTPR-------GLDILAACGQ 364
I+T R G D+LA+CG
Sbjct: 264 SVCNDETIKTNRSRIVPRIGQDVLASCGM 292
>gi|255640205|gb|ACU20393.1| unknown [Glycine max]
Length = 271
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 54/255 (21%)
Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWI----------YVRGIRDFQGMSDISQEVRHLLN 65
EL + K GI + + +IWK I + + + + LL
Sbjct: 11 ELRREVEKSGIDPKFIP----KIWKHILISAKDEDWDWEKQVPS------LPSSAYSLLR 60
Query: 66 QHF-SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------ 112
+F + + I S D LL G VE + +
Sbjct: 61 SNFKTPLSSSIHSVFHSADNLTTKLLIQLHHNHGPFVEAVIMRYDTRLGKYAGQPRPGGL 120
Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
R TLC+SSQVGC + C+FC TG+ NL++ EI+ Q++ A
Sbjct: 121 RATLCISSQVGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHA------------------ 162
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S +I N+V MGMGEPL N+ V +++ I + + S +RIT+ST G + I ++
Sbjct: 163 -STFSQIRNVVFMGMGEPLNNYSAVVEAVRIMT-GLPFQLSSKRITISTVGIIHAINKLH 220
Query: 233 EE-IGVMLAISLHAV 246
++ G+ LA+SLHA
Sbjct: 221 DDLPGLNLAVSLHAR 235
>gi|313634809|gb|EFS01238.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067]
gi|313639434|gb|EFS04296.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171]
Length = 78
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L
Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56
Query: 64 LNQHFSIIYPEIVDEKIS 81
L +F + E + S
Sbjct: 57 LTANFVMSTLEEQVVQES 74
>gi|311978166|ref|YP_003987286.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus]
gi|308205034|gb|ADO18835.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus]
Length = 298
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 105/269 (39%), Gaps = 35/269 (13%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+SS GC + C FC T R+++ EE Q+ S + G V
Sbjct: 37 LSSHNGCKMACKFCWLTATNQTNF-RHVSIEEYANQLDTVLSHGKEIDGENSRIVRV--- 92
Query: 175 VGRKISNIVMMGMGEPLCNFDNV------KKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
NI +M GE L N + V K L + S K ++ +
Sbjct: 93 ------NINLMSRGEALANKNLVNNYDKFHKELQYIINKYDYSEMKMNVSTIMPKVIEHK 146
Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
+ + + V + SL++ + R +P + +Y + + R + ++ I F +
Sbjct: 147 KLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRYEI--ALRKLREFQKETD-NTIAFHF 203
Query: 287 VMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPG-CEYLCSDQKDIVTFSECIK 342
+++ ND+ D ++ +I++ + K NL+ FNP P Y + + E ++
Sbjct: 204 AVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMSNYKEPSVEKLEKIYEILQ 263
Query: 343 RSGYSSPIRTPR-------GLDILAACGQ 364
I+T R G D+LA+CG
Sbjct: 264 SVCNDETIKTNRSRIVPRIGQDVLASCGM 292
>gi|168027205|ref|XP_001766121.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682764|gb|EDQ69180.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 180
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 27/201 (13%)
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
+ I S DGT + LL + V I Y SR T CV GC+L C+
Sbjct: 1 VGRSPIHHFITSKDGTVQVLLSLEDDRLVEAVGIPVTYRKGGSRLTDCV----GCALNCT 56
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
FC TG RNL + EI+ + + + LL + ++N+V MGMGE
Sbjct: 57 FCCTGKDGFARNLKSHEIVDRACILQDLLR-----------------KPMTNMVFMGMGE 99
Query: 190 PLCNFDNVKKSLSIASDS-----MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
PL N V +D +++ + + T G + I R+ + ML +SL
Sbjct: 100 PLINLGAVLDDHLSKTDVLYIIIQESKTAQQMMVILTVGILNTIRRLAPHKFHSMLVVSL 159
Query: 244 HAVSNDLRNILVPINRKYPLE 264
HA + LR+ LVP +Y L+
Sbjct: 160 HAPNQGLRSKLVPSANRYSLD 180
>gi|326333648|ref|ZP_08199885.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
gi|325948554|gb|EGD40657.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
Length = 57
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
L P NP PG ++ SD D F ++ G S+ +R RG +I ACGQL +
Sbjct: 3 LCPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREIDGACGQLAAAE 57
>gi|266624678|ref|ZP_06117613.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
gi|288863457|gb|EFC95755.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
Length = 62
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++K + + EEL + G R Q+++W++ + ++ M+++ + ++
Sbjct: 1 MEKTDIKSLNLEELTAFITASG----EKAFRAKQLYEWMHKKLAPGYEEMTNLPKALKER 56
Query: 64 LNQHFS 69
L +
Sbjct: 57 LKETCE 62
>gi|251791822|ref|YP_003006542.1| protein YfgB [Aggregatibacter aphrophilus NJ8700]
gi|247533209|gb|ACS96455.1| protein YfgB [Aggregatibacter aphrophilus NJ8700]
Length = 77
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++++R L
Sbjct: 16 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKL 71
Query: 65 N 65
Sbjct: 72 K 72
>gi|218662568|ref|ZP_03518498.1| hypothetical protein RetlI_25657 [Rhizobium etli IE4771]
Length = 72
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 42/57 (73%)
Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
WPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R
Sbjct: 1 WPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 57
>gi|325114723|emb|CBZ50279.1| uvrd-like DNA helicase, C terminal, related [Neospora caninum
Liverpool]
Length = 139
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK------GIPAKI 313
+P+E ++D + RRI Y+++KG ND+ A L +L+ +
Sbjct: 1 MFPMEEVLDLLDERLAKT-GRRIWISYILIKGRNDTDDHARALAALLRARRLPTRHLYHV 59
Query: 314 NLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
N+IP+N G E ++ F++ +++ S R G I AACGQ+ + +
Sbjct: 60 NVIPYNKAQGVEPSMQSPSAAEVNHFTDLLRKLNLSVSRRHTIGSAIDAACGQMHAEYEV 119
Query: 372 IPKVPRQEMQI 382
+++ +
Sbjct: 120 GQLTKQRQARE 130
>gi|218673229|ref|ZP_03522898.1| hypothetical protein RetlG_17291 [Rhizobium etli GR56]
Length = 75
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 40/58 (68%)
Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
P P Y CS + I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R
Sbjct: 3 PGPAPNYQCSGWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 60
>gi|154492443|ref|ZP_02032069.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC
43184]
gi|154087668|gb|EDN86713.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC
43184]
Length = 260
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 25/209 (11%)
Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
R + VS+ GC + C FC TG K RNLTA+EI+ QV A G P +
Sbjct: 57 ERWMIGVSTMSGCPVRCKFCATGNMKRYRNLTADEIVGQVEFAIEQAGFDPCDANEFK-- 114
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
I MGEP N + VK+++ S+ + +ST G
Sbjct: 115 ----------INYTRMGEPFLNIEAVKEAIGRISE----IYPNTHHYVSTIGI-KGSDFS 159
Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
+ V L ISLH+ + RN L+P +K +E L + + T +
Sbjct: 160 FVKGNVTLQISLHSFDEEKRNWLIPYPKKMSIEELGR-----IRTESNLKTTINLTL--- 211
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNP 320
+N+S D L K + L P NP
Sbjct: 212 VNESDFDTEKLEKYFDKEYFFVKLSPINP 240
>gi|297847344|ref|XP_002891553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337395|gb|EFH67812.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 97
Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
+NP G E +K ++ F+ ++ ++ +R RGLD AACGQL++ ++ P +
Sbjct: 11 YNPIEGSEQKRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLAE 70
Query: 378 QEMQIT 383
+ Q +
Sbjct: 71 TDGQES 76
>gi|168699972|ref|ZP_02732249.1| hypothetical protein GobsU_10628 [Gemmata obscuriglobus UQM 2246]
Length = 313
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 50/262 (19%), Positives = 97/262 (37%), Gaps = 31/262 (11%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+SSQ GC+ C C TG Q +R+ T E L Q + + +
Sbjct: 49 LSSQTGCAQACRMCHLTATG-QTHLRDTTFNEFLEQAETVLAHYRREGKPARAVHFNLMA 107
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
G +++ V+ G+ L ++ ++G R + +ST + E
Sbjct: 108 RGEPLASKVIATRGDELL--------GELSRLAVGSGLRPRHL-ISTI-YPKAFGDRALE 157
Query: 235 -----IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
+ S+++VS R +P +P E+ +D + S + + +
Sbjct: 158 DVFVVHQPEIHYSIYSVSERFRRRWLPKA--HPAEVALDRLAAWQRHSLKL-VVLHHAYI 214
Query: 290 KGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCEY-LCSDQKDIVT----FSECIK 342
G ND+ D + L + + A IN++ +NP+ + + + + E +
Sbjct: 215 AGENDTEGDVHAICDALEERKLMAHINVVRYNPFDPARHGTEPPEAVVERNAAIYRERLP 274
Query: 343 RSGYSSPIRTPRGLDILAACGQ 364
+ R G D+ A+CG
Sbjct: 275 GARVVVIARV--GFDVAASCGM 294
>gi|189490583|ref|YP_001957153.1| Fe-S-cluster redox domain-containing protein [Pseudomonas phage
201phi2-1]
gi|164609648|gb|ABY63257.1| hypothetical protein 201phi2-1p434 [Pseudomonas phage 201phi2-1]
Length = 302
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/269 (20%), Positives = 91/269 (33%), Gaps = 38/269 (14%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+SSQ GC C C TG R++T +E Q D +
Sbjct: 47 LSSQTGCKQACRMCWLTATGQTD-SRDVTVQEYFEQAERVFDHYIDMVRNNHVGSAATKV 105
Query: 175 VGRKISNIVMMGMGEPL------CNFDNVKKSLSIASDSMGLSFSKRRITLS--TSGFVP 226
+ M GEPL N D + + L ++ GL T+ GF
Sbjct: 106 ------HFNFMARGEPLANKHFVENADEILRGLKRMAEQWGLEAKFLISTIWPKEFGFTK 159
Query: 227 NIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
E+ L SL++++ R +P E +D + + +
Sbjct: 160 LTDVFTDPEVYPELYYSLYSLNPKFRKQWLPKAAA--PETALDELKCWQEATGKTP-KIH 216
Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI--NLIPFNPWPGCEYLCSDQKDIVTFSECIK- 342
Y + NDS D +I +K + K+ N++ +NP P Y ++ + + +
Sbjct: 217 YAFINDQNDSIGDVKAIIDEIKEVGLKVNWNIVRYNP-PEGHY---SKEPVEGHVKYLHG 272
Query: 343 -------RSGYSSPIRTPRGLDILAACGQ 364
+ R G D+ A+CG
Sbjct: 273 FIQRHLPDAKVKLIPRV--GTDVKASCGT 299
>gi|213419786|ref|ZP_03352852.1| hypothetical protein Salmonentericaenterica_19178 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 64
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381
S I FS+ + G+++ +R RG DI AACGQL R + R+ MQ
Sbjct: 1 RSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 55
>gi|217074618|gb|ACJ85669.1| unknown [Medicago truncatula]
Length = 221
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/214 (25%), Positives = 81/214 (37%), Gaps = 52/214 (24%)
Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQ----GM----SDISQEVRHLLNQH 67
EL K GI + + + IWK I+ D + L +
Sbjct: 11 ELRTEFSKTGIDPKFIPI----IWKHIFRNSNSDSDYCNWEWEKHVPSLPCSAYSFLRSN 66
Query: 68 FSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR------------ 113
F +D S + T K +++ +E V + +R
Sbjct: 67 FKTPLSSSLDSIFHSSDNVTSKLVIKLQ-----NGEFVEAVIMRYDTRLGKYGGEPRPGG 121
Query: 114 --GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
TLC+SSQVGC + C FC TG+ NL++ EI+ Q++ A +
Sbjct: 122 LRATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASAFA------------- 168
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
I N+V MGMGEPL N+ V +S+ I S
Sbjct: 169 ------HIRNVVFMGMGEPLNNYSAVVESVRIMS 196
>gi|294954127|ref|XP_002788018.1| hypothetical protein Pmar_PMAR024230 [Perkinsus marinus ATCC 50983]
gi|239903222|gb|EER19814.1| hypothetical protein Pmar_PMAR024230 [Perkinsus marinus ATCC 50983]
Length = 92
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 298 DALNLIKILKGIP------AKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
A L +++K P INL+P+N + +D F + G ++
Sbjct: 4 HARALAQLIKDRPKQTSYLYHINLLPYNEARDVSTAFKRC--EDWNQFQSILTNEGITTS 61
Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
R G I AACGQL + + + R+
Sbjct: 62 FRNSFGRSIDAACGQLYATYEAKNALKRK 90
>gi|330983424|gb|EGH81527.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 293
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 99/257 (38%), Gaps = 23/257 (8%)
Query: 118 VSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+SSQ GC +C FC+ T Q + N T E+ L Q L + D D+ +
Sbjct: 44 LSSQSGCDQSCRFCHLTTTGQVKLDNATLEDFLEQAKLVLAYY-DTQAPADLVHYNFMAR 102
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE 234
G ++N ++ L N L +D GL ++ + ++ E
Sbjct: 103 GEPLNNPLIRHDSATLLNT------LKGLADQRGLETKFLISSIFPKALGDLTLPQMFPE 156
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ + S++++ + R + + + E ++ + + S + ++G ND
Sbjct: 157 VHPEIYYSIYSMKPEFRRRWL--AKAHSAEKGLEMLKEWQEFSGKTP-KIHFAFIEGQND 213
Query: 295 SPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
S D + + + +N++ +NP+ + + +E + ++P
Sbjct: 214 SEEDMHLIATAINALDLRVSLNIVRYNPYDHRYGKEPAEAVVNRNAELLSSL-INAP--A 270
Query: 353 PR-----GLDILAACGQ 364
R G+D+ A+CG
Sbjct: 271 TRVVPKVGMDVKASCGM 287
>gi|297517024|ref|ZP_06935410.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
OP50]
Length = 60
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381
I FS+ + G+++ +R RG DI AACGQL R + R+ MQ
Sbjct: 2 RIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 51
>gi|224419301|ref|ZP_03657307.1| hypothetical protein HcanM9_08523 [Helicobacter canadensis MIT
98-5491]
gi|313142800|ref|ZP_07804993.1| predicted protein [Helicobacter canadensis MIT 98-5491]
gi|313131831|gb|EFR49448.1| predicted protein [Helicobacter canadensis MIT 98-5491]
Length = 52
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
+ K+++ G L ++L + R QI+ W+YV DF+ M ++ + +R
Sbjct: 1 MDKQNVFGFTLNSLSDSLKDF------PKFRAKQIYHWLYVHYENDFEKMENLPKNLR 52
>gi|254167208|ref|ZP_04874061.1| radical SAM domain protein [Aciduliprofundum boonei T469]
gi|197624064|gb|EDY36626.1| radical SAM domain protein [Aciduliprofundum boonei T469]
Length = 314
Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 65/296 (21%), Positives = 100/296 (33%), Gaps = 47/296 (15%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLG 159
T + L VSS GC + C C G L +EI+ Q+ + G
Sbjct: 24 FVESTPTGDIGEKWVLIVSSLNGCPVGCKMCDAGFF-YKGKLDYKEIMEQIEYPIKKRFG 82
Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
+ P + + I MGEP N V + D +F T+
Sbjct: 83 EKPKTKKFK-------------IQFARMGEPSFNP-AVLDVIENLGDKYD-NFFPSLSTI 127
Query: 220 STSGFVPNIARV------GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
+ G R+ L S+H + R+ ++PI RK+ + + D R +
Sbjct: 128 APVGVDSFFERLLKIKKEKYPEKFQLQFSIHTTNQKQRDEIIPI-RKWDFKRISDYGRKF 186
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALN-------LIKILKGIP---AKINLIPFNPWPG 323
+IT + + K P ++ LIKI P AKIN I N
Sbjct: 187 YD-EGGLKITLNFALAKENEADPEIIMDFFSPEYFLIKITPVNPTVSAKINHIS-NDINL 244
Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD----ILAACGQ--LKSLSKRIP 373
L F + ++R GY I G I + CG L+ + +R
Sbjct: 245 RNGLPVKH---RKFVDTLERMGYDVII--SIGDTKENLIGSNCGMFILRFIKERAE 295
>gi|218461239|ref|ZP_03501330.1| hypothetical protein RetlK5_17732 [Rhizobium etli Kim 5]
Length = 73
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56
+K SLIG+ REE+ AL + G+ + ++MR +Q+W IYVRG+ DF M+++
Sbjct: 22 EKPSLIGLSREEMAAALTEKGVAENQIKMRVAQLWNCIYVRGVSDFDRMTNV 73
>gi|227885422|ref|ZP_04003227.1| conserved hypothetical protein [Escherichia coli 83972]
gi|227837605|gb|EEJ48071.1| conserved hypothetical protein [Escherichia coli 83972]
Length = 80
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC
Sbjct: 1 KASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGC 55
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILL 149
+L CSFC TG Q +LTA E++
Sbjct: 56 ALDCSFCSTGKQGFNSDLTAAEVIG 80
>gi|254167584|ref|ZP_04874435.1| radical SAM domain protein [Aciduliprofundum boonei T469]
gi|289596962|ref|YP_003483658.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
gi|197623393|gb|EDY35957.1| radical SAM domain protein [Aciduliprofundum boonei T469]
gi|289534749|gb|ADD09096.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
Length = 318
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 68/319 (21%), Positives = 105/319 (32%), Gaps = 47/319 (14%)
Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
+I + K + + T + L VSS GC + C C G
Sbjct: 5 REIGDESIAKVYIGKTYKGNIIEFVESTPTGDIGEKWVLIVSSLNGCPVGCKMCDAGFF- 63
Query: 138 LVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
L +EI+ Q+ + + P + + I MGEP N
Sbjct: 64 YKGKLDFKEIMEQIEYPIKKRFEEKPKTKKFK-------------IQFARMGEPSFNP-A 109
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV------GEEIGVMLAISLHAVSNDL 250
V + D +F T++ G R+ L S+H +
Sbjct: 110 VLDVIENLGDKYD-NFFPSLSTIAPVGVDSFFERLLKIKKEKYPEKFQLQFSIHTTNTKQ 168
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA-------LNLI 303
R+ ++PI RK+ + + D R + + +IT + + K P LI
Sbjct: 169 RDEIIPI-RKWDFKRISDYGRKFYD-EGSLKITLNFALAKENEADPEIIMNFFSPEYFLI 226
Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD--- 357
KI G P AKIN I N L F + +KR GY I G
Sbjct: 227 KITPGNPTVSAKINHIS-NDIDLRNGLPVKH---RKFVDTLKRMGYDVII--SIGDTKEN 280
Query: 358 -ILAACGQ--LKSLSKRIP 373
I + CG L+ + +R
Sbjct: 281 LIGSNCGMFILRFIKERAE 299
>gi|154249178|ref|YP_001410003.1| radical SAM domain-containing protein [Fervidobacterium nodosum
Rt17-B1]
gi|154153114|gb|ABS60346.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
Length = 329
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 67/340 (19%), Positives = 115/340 (33%), Gaps = 50/340 (14%)
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L EI+++ D +L + + VE IP + L VS+ G
Sbjct: 9 LKDLKYTQELEIIEKYGKEDIAMVYLGKTRQGALVEFVESVQPPIPRDKKWVLIVSTMDG 68
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C + C C G R L+ EEIL Q+L + + I
Sbjct: 69 CPVGCKMCDAG-GYYKRRLSKEEILAQILYLIRSRYEDEVPVEKFK------------IQ 115
Query: 184 MMGMGEPLCNFDNVKKSLSIAS---DSMGLSFSKRRIT-LSTSGFVPNIARVGEEIG--- 236
+GEP N D V K L D+ GL S + + +G+ + + E+
Sbjct: 116 FARVGEPALN-DEVLKVLDELPQIIDAPGLMPSISTVAPIGRNGWFERLIEIKEKHYRGK 174
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
L S+H+ R+ ++P+ +K+ + + + + +IT + + K +
Sbjct: 175 FQLQFSIHSTDEKQRDEIIPV-KKWSFREISEYGEKFVTTEDR-KITLNFALAKE---NI 229
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI-------------VTFSECIKR 343
DA ++ I + P NP S + + F + ++
Sbjct: 230 ADARVIMNFFNPEKFLIKITPVNPT-----YRSIENGLNSDVTGEGLVLEHREFVDKLRE 284
Query: 344 SGYSSPIRTPRGL----DILAACGQLKSLSKRIPKVPRQE 379
SGY I G I + CGQ K +
Sbjct: 285 SGYDVII--SVGELEENKIGSNCGQYVQRHLNAQKKLEEA 322
>gi|302854259|ref|XP_002958639.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f.
nagariensis]
gi|300256028|gb|EFJ40305.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f.
nagariensis]
Length = 438
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
FNP+PG Y+ S + + F ++ G +R +G +AACGQL
Sbjct: 350 RFNPFPGTLYVPSAPERVDEFRRVLREGGRIVHVRQSKGDSGMAACGQL 398
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 59/173 (34%), Gaps = 47/173 (27%)
Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI---- 108
M+ + R LL+ + D + DGTRK + R G +
Sbjct: 174 MT----KFRALLSLQ---GGLMLEDVTPASDGTRKLVFRVTEGEAAGGRIETVLIPWFRD 226
Query: 109 -------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
E R TLCVSS QVL+A+ LL
Sbjct: 227 YDPRVGRREHPRYTLCVSS-----------------------------QVLVAQRLLDQD 257
Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
P + I+NIV MGMGEPL N V ++ I + GL FS
Sbjct: 258 PARPPAATAATAATAAPITNIVFMGMGEPLHNCTAVFAAIDILTHRRGLGFSA 310
Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY 43
G+ EL++ G R Q+W+W+Y
Sbjct: 46 KGVTLPELQQWFAAQGERPS----RADQLWRWVY 75
>gi|212694596|ref|ZP_03302724.1| hypothetical protein BACDOR_04124 [Bacteroides dorei DSM 17855]
gi|212663097|gb|EEB23671.1| hypothetical protein BACDOR_04124 [Bacteroides dorei DSM 17855]
Length = 56
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
+ D + +V F + + + G + IR RG DI AACG L + ++ K
Sbjct: 2 DLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGMLSTAKQQKEK 51
>gi|15642910|ref|NP_227951.1| hypothetical protein TM0136 [Thermotoga maritima MSB8]
gi|4980628|gb|AAD35229.1|AE001699_6 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 329
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 107/311 (34%), Gaps = 40/311 (12%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
+I+ + +L + VE +P + + L VS+ GC + C C
Sbjct: 20 KILKRVGKEEVAYVYLGETSRGNLVEFVESIQPPVPREKKWVLIVSTLAGCPVGCLMCDA 79
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G L+A+EI Q+ DF IPS KI MGEP N
Sbjct: 80 GGF-YRGKLSADEIFEQI--------DFLVKSRYPNGRIPSEKFKIQ---FARMGEPALN 127
Query: 194 FDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARV------GEEIGVMLAISLHAV 246
+ V L T++ G + L S+H+
Sbjct: 128 -EAVLDVLKELPARYEAPGLMPSISTVAPCGTDSFFEDLLKIKEKHYRGKFQLQFSIHST 186
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
R+ ++P+ +K+ LE + + + + N R+IT + + + + P +I++
Sbjct: 187 DEKERDQIIPV-KKWSLEKISEFGKRFVK-ENDRKITLNFAVAQEYSLDP---KVIIRVF 241
Query: 307 KGIPAKINLIPFNPW---------PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL- 356
+ + P NP + + F E +K++G+ + G
Sbjct: 242 DPEKFLVKITPVNPTYRSKENNLNSDVDVERKELLKHRNFIEELKKAGFEVIL--SIGEL 299
Query: 357 ---DILAACGQ 364
I + CGQ
Sbjct: 300 EENKIGSNCGQ 310
>gi|219558901|ref|ZP_03537977.1| hypothetical protein MtubT1_16982 [Mycobacterium tuberculosis T17]
Length = 114
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
L + A+ ++G+P R Q+ Y R I D + M+D+ VR +
Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72
Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEI 103
+ TRK L R + V +
Sbjct: 73 AMFPNLLTASADITCDAGQTRKTLWRAVDGTMFESVLM 110
>gi|167768547|ref|ZP_02440600.1| hypothetical protein CLOSS21_03106 [Clostridium sp. SS2/1]
gi|167710071|gb|EDS20650.1| hypothetical protein CLOSS21_03106 [Clostridium sp. SS2/1]
Length = 49
Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
L M +E++E + IG + R QI++W + M+++ +
Sbjct: 2 DLKSMTLQEMQEYMESIG----EKKFRAKQIYEWFHKHLALSLDEMNNVPKN 49
>gi|222099528|ref|YP_002534096.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
gi|221571918|gb|ACM22730.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
Length = 311
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/316 (19%), Positives = 105/316 (33%), Gaps = 50/316 (15%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
I+ + +L + VE +P + + L VS+ VGC + C C
Sbjct: 2 RIIRRIGKEEVAYVYLGETSKGNLVEFVESIQPPVPREKKWVLIVSTLVGCPVGCFMCDA 61
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G L++EEIL Q+ DF +P KI MGEP N
Sbjct: 62 GGF-YRGKLSSEEILEQI--------DFLVESRYPDRKVPVEKFKIQ---FARMGEPALN 109
Query: 194 FDNVKKSLSIASDSM-GLSFSKRRITLSTSGFVPNIARV------GEEIGVMLAISLHAV 246
D V L T++ G + L S+H+
Sbjct: 110 -DAVLDVLEDLPKRYNAFGLLPSISTVAPHGTDSFFEELLKIKEKHYRGRFQLQFSIHST 168
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ R+ ++P+ +K+ L + + + + + +IT + + + P ++L
Sbjct: 169 NERERDRIMPV-KKWSLREISEYGKTFVKQGDR-KITLNFAAAQNYSLDPDVIVDLFD-P 225
Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDI--------------VTFSECIKRSGYSSPIRT 352
K KI P NP S + D+ F ++ +G+ +
Sbjct: 226 KKFLVKIT--PVNPT-----YRSRENDLKSDVDVEKGVLIKHQKFVSKLREAGFEVIL-- 276
Query: 353 PRGL----DILAACGQ 364
G I + CGQ
Sbjct: 277 SIGELEENKIGSNCGQ 292
>gi|320158412|ref|YP_004190790.1| radical SAM domain-containing protein [Vibrio vulnificus MO6-24/O]
gi|319933724|gb|ADV88587.1| radical SAM domain protein [Vibrio vulnificus MO6-24/O]
Length = 274
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 27/215 (12%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLV---RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+S+Q GC + C FC RNLTA+E++ QV A G P
Sbjct: 66 ISTQSGCPIKCKFCAVNKLTARQGWRNLTADEMVAQVEWAIEQAGHDP------------ 113
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR---- 230
++ I+ MGEP N NV +++ + K RI +ST GF + R
Sbjct: 114 EDAQLFRILFTRMGEPAMNVKNVVEAVRRLKA----RYPKVRIQVSTIGFGKHSQRLVNA 169
Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
+ E + L S+H+ SN+ R + E + + R + + ++T + +
Sbjct: 170 LYEFDNIELQFSIHSTSNEYRQ-WLQHKDVSSNEDISELIREWHSVPREWKVTLNFAL-- 226
Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
++P D L + I + P N +
Sbjct: 227 -TTETPFDVKELRRQFNPDEVFIKVSPINENSESD 260
>gi|148269924|ref|YP_001244384.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
gi|170288609|ref|YP_001738847.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
gi|281412195|ref|YP_003346274.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
gi|147735468|gb|ABQ46808.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
gi|170176112|gb|ACB09164.1| Radical SAM domain protein [Thermotoga sp. RQ2]
gi|281373298|gb|ADA66860.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
Length = 311
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 61/311 (19%), Positives = 104/311 (33%), Gaps = 40/311 (12%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
+I+ + +L + VE IP + + L VS+ GC + C C
Sbjct: 2 KILKRVGKEEVAYVYLGETSRGNLVEFVESIQPPIPREKKWVLIVSTLAGCPVGCLMCDA 61
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G L+A+EI Q+ DF IPS KI MGEP N
Sbjct: 62 GGF-YKGKLSADEIFEQI--------DFLVKSRYPNGRIPSEKFKIQ---FARMGEPALN 109
Query: 194 FDNVKKSLSIAS-DSMGLSFSKRRITLSTSGFVPNIARV------GEEIGVMLAISLHAV 246
+ V L T++ G + L S+H+
Sbjct: 110 -EAVLDVLKELPVRYEAPGLMPSISTVAPHGTDSFFEELLKIKEKHYRGKFQLQFSIHST 168
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
R+ ++P+ +K+ L+ + + + + N R+IT + + + + P + +
Sbjct: 169 DEKERDRIIPV-KKWSLDKISEFGKRFVK-ENDRKITLNFAVAQEYSLDPEVIIEVFD-P 225
Query: 307 KGIPAKINLIPFNPW---------PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL- 356
+ KI P NP + F E +K +G+ + G
Sbjct: 226 EKFLVKIT--PVNPTYRSKENNLNSDVDVERKGLLKHQNFIEELKNAGFEVIL--SIGEL 281
Query: 357 ---DILAACGQ 364
I + CGQ
Sbjct: 282 EENKIGSNCGQ 292
>gi|207111233|ref|ZP_03245395.1| hypothetical protein HpylH_19398 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 54
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
+ +NDS A L+K+L GI +K+NLI FNP G ++ + F+
Sbjct: 1 RDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFA 49
>gi|150019940|ref|YP_001305294.1| radical SAM domain-containing protein [Thermosipho melanesiensis
BI429]
gi|149792461|gb|ABR29909.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
Length = 312
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 66/314 (21%), Positives = 106/314 (33%), Gaps = 46/314 (14%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
EI+ + + +L + + VE IP + + L VS+ GC + C C
Sbjct: 2 EILKKVGKEEVAYVYLGKTSRGNLVEFVESIQPPIPREKKWVLIVSTLNGCPVGCLMCDA 61
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G L ++EI+ Q+L +P KI MGEP N
Sbjct: 62 GGF-YKGKLQSDEIMEQILFL--------VESRFINKRVPVEKFKIQ---FARMGEPALN 109
Query: 194 FDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEEI------GVMLAISLHAV 246
+ V L T++ G R+ E L S+HA
Sbjct: 110 -EAVLDVLERLPKEIDAPGLMPSVSTVAPIGTDDFFERLLEIKDKMYLGRFQLQFSIHAT 168
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
D RN ++PI +K+ E + + S R++T + + K + D +IK
Sbjct: 169 DKDQRNRIIPI-KKWSFEDIAKYGEKFVK-SGDRKVTLNFALAKQ---NIADPDVIIKYF 223
Query: 307 KGIPAKINLIPFNP------------WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
I + P NP ++ + + F E + +GY I
Sbjct: 224 DKEKFLIKITPINPTYSAMKNNLESDIDLKTFIPVNHQY---FVEKLMEAGYDVII--SI 278
Query: 355 GL----DILAACGQ 364
G I + CGQ
Sbjct: 279 GELEENKIGSNCGQ 292
>gi|27597164|dbj|BAC55153.1| putative Fe-S-cluster redox enzyme homologue [Halomonas sp. #593]
Length = 45
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG 46
++ +L+GM REE+E L IG + R +Q+ KWI+ G
Sbjct: 8 QRPNLLGMTREEMEAFFLSIG----EKKFRAAQVMKWIHQEG 45
>gi|325116881|emb|CBZ52434.1| hypothetical protein NCLIV_022230 [Neospora caninum Liverpool]
Length = 157
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
R G + ++ + + T S + G +R L+A+EI Q
Sbjct: 14 DLFDRLYGNGRQHKSETHEQSAAKTEESSDEARVGE------VGKSGFLRQLSADEITDQ 67
Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
VL G KI ++ +MGMGEPL N V +L I +D +
Sbjct: 68 VLFFLR------------------QGIKIDSVSLMGMGEPLANPK-VFDALRILTDPLLF 108
Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
+FS R++ +ST G +P I ++ EE V LA SLH+ + RN
Sbjct: 109 NFSARKLAVSTLGVLPGIKKLTEEHPQVNLAFSLHSPFPEERN 151
>gi|289804622|ref|ZP_06535251.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 39
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQE 379
G+++ +R RG DI AACGQL R + R+
Sbjct: 1 MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKR 39
>gi|289811062|ref|ZP_06541691.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 56
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV 44
+N K +L+ + R+++ E +G R Q+ KW+Y
Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYH 55
>gi|213622072|ref|ZP_03374855.1| hypothetical protein SentesTyp_32941 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 55
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV 44
+N K +L+ + R+++ E +G R Q+ KW+Y
Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYH 55
>gi|331092439|ref|ZP_08341264.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401282|gb|EGG80871.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 303
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/243 (14%), Positives = 78/243 (32%), Gaps = 34/243 (13%)
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q C C T V N A E++ + L+ +
Sbjct: 77 QCTDRTKCKVCSTCLDYCVNN--AREVVGKQYTIAELVKEVDKDYMFYEESFG------- 127
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
+ + G + + +++ L G + IT+ T GF P V
Sbjct: 128 GVTLSGGEVMAQDMEYIEELLKKLK-RKGYN-----ITIDTCGFAPEENFQIVLPYVDTF 181
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+ + ++ ++ + + N RI ++ G+NDS +
Sbjct: 182 LYDIKLMDNEKHKKYMGQSNELIFTNLKYL-----SDNGARIYIRIPVIGGVNDSDEEIQ 236
Query: 301 NLIKILKGIP--AKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGY 346
+I LK A++NL+P++ +Y ++ + E +++G+
Sbjct: 237 AIISYLKENISVAQVNLLPYHDIASSKYQRLDVTYKGKEFTVPSKERMEELKEMFQKNGF 296
Query: 347 SSP 349
++
Sbjct: 297 TNT 299
>gi|157364718|ref|YP_001471485.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
gi|157315322|gb|ABV34421.1| Radical SAM domain protein [Thermotoga lettingae TMO]
Length = 323
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 58/311 (18%), Positives = 101/311 (32%), Gaps = 43/311 (13%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
+I+ + + ++ + V+ + L +S+ GC + C C
Sbjct: 2 KIIAKYGKENIATVYIGITSRGSMVEFVQSVQPPFSRNEKWVLIISTLKGCPVGCLMCDA 61
Query: 134 GTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
G LTAEE+L Q+ L + D I MGEP
Sbjct: 62 G-GYYEGKLTAEEMLEQIDFLIKEYFPDGLVKVKKFK------------IQFARMGEPAL 108
Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV------GEEIGVMLAISLHAV 246
N NV L SD + T++ G R+ + L S+H+
Sbjct: 109 N-KNVLTVLEKVSDHE--NLIPSISTVAPYGCEEFFDRLLSIKQRHYQGRFQLQFSIHST 165
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
+ R+ ++P+ RK+ + + + N R+I + + + S A +
Sbjct: 166 DENQRDEIIPV-RKWSFKDIALYGEKFVKN-NDRKIALNFALSNKVTVS---AEKIANTF 220
Query: 307 KGIPAKINLIPFNPW---------PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL- 356
I + P NP + F E +K+SG+ + G
Sbjct: 221 SPDKFLIKITPVNPTYNAVNNQIESDIDLSTGFPVRHRVFMEELKKSGFEIIL--SIGEP 278
Query: 357 ---DILAACGQ 364
I + CGQ
Sbjct: 279 EENKIGSNCGQ 289
>gi|218546617|gb|ACK98957.1| predicted Fe-S-cluster redox enzyme [Aeromonas sobria]
Length = 46
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 346 YSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
+ +R RG DI AACGQL R + + MQ G
Sbjct: 1 LTVIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 40
>gi|226498404|ref|NP_001141738.1| hypothetical protein LOC100273870 [Zea mays]
gi|194705752|gb|ACF86960.1| unknown [Zea mays]
Length = 105
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MG+P N DNV K+ +I G FS R++T+STSGFVP + ++ A SL+A
Sbjct: 1 MGQPFHNIDNVIKASAIMVHEQGH-FSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGIN 293
++++RN ++ INRK L +L+ R L ++I EY ML G+N
Sbjct: 55 TDEVRNWIMTINRKENLNLLLGTLRGELNLRKKKQIVLSEYAMLSGVN 102
>gi|218546596|gb|ACK98944.1| predicted Fe-S-cluster redox enzyme [Aeromonas bestiarum]
Length = 44
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 348 SPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
+R RG DI AACGQL R + + MQ G
Sbjct: 1 VIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQEG 38
>gi|218546608|gb|ACK98951.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
smithia]
gi|218546614|gb|ACK98955.1| predicted Fe-S-cluster redox enzyme [Aeromonas hydrophila]
Length = 44
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 348 SPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
+R RG DI AACGQL R + + MQ G
Sbjct: 1 VIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 38
>gi|187776896|ref|ZP_02993369.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
15579]
gi|187775555|gb|EDU39357.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
15579]
Length = 300
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 81/271 (29%), Gaps = 49/271 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFC--GKCTNFCPNNAREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++ ++ + E + G GEP+ + D + L +
Sbjct: 107 TSQEIIKEIIKDEVFYEESGG-------GVTFSG-GEPMLHADFINGILEEC------NV 152
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
T+ TSG+V V L + N+ + + ++
Sbjct: 153 RGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELLSK 212
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC--- 328
Y I ++ +ND+ + IK + K ++NL+P++ +Y
Sbjct: 213 Y-----GHNIYLRIPIINDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKRLKM 267
Query: 329 ---------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 268 EYKLTGEEKPSDEKMNKIAEKFKKAGIKVKI 298
>gi|239618428|ref|YP_002941750.1| Fe-S-cluster redox enzyme-like protein [Kosmotoga olearia TBF
19.5.1]
gi|239507259|gb|ACR80746.1| Fe-S-cluster redox enzyme-like protein [Kosmotoga olearia TBF
19.5.1]
Length = 324
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 25/213 (11%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+ +S+ VGC + CS C G LTA+E+L Q+ ++ G +PS
Sbjct: 44 IIISTLVGCPVGCSMCDAGGF-YGGKLTAKEMLEQI--------EYVVNFRFGGRKVPSK 94
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARV--- 231
KI MGEP N D V L + T++ G R+
Sbjct: 95 KFKIQ---FARMGEPAFN-DAVIDVLDRLPEEFEAPGLLPSVSTIAPKGREAFFERLYWI 150
Query: 232 ---GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
L S+H+ RN ++P+ K+ LE + + + + + +IT + +
Sbjct: 151 KERHYGGRFQLQFSIHSTDLRQRNEIIPV-PKWHLEKIAEYGKEFVKEGDR-KITLNFAL 208
Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
K D+ D +IK I + P NP
Sbjct: 209 SK---DNIVDPGIIIKHFDPEKFLIKITPVNPT 238
>gi|307352680|ref|YP_003893731.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
DSM 11571]
gi|307155913|gb|ADN35293.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
Length = 318
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 55/284 (19%), Positives = 90/284 (31%), Gaps = 40/284 (14%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
+I+ E + D R ++ VE + L VSS GC + C C
Sbjct: 2 KIIAETGNEDIARVYIAEIDDGRRIEFVESVQPPFTRSQKWVLIVSSLFGCPVGCRMCDA 61
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
G L+AE+I Q+ D+ + G + + KI MGEP N
Sbjct: 62 G-GGYRGKLSAEDIYAQI--------DYLVRKRFPGGYVDADKFKIQ---FARMGEPAFN 109
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV------GEEIGVMLAISLHAVS 247
+ S+ + T++ G R+ L S+H
Sbjct: 110 PAVLDVLESLKTRYKAPGLIPSLSTIAPEGCDEFFKRLLEIKNEHYRERFQLQFSIHTTD 169
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
R L+P+ + + E + + + R+IT + + G N L K
Sbjct: 170 MVTREWLIPV-KTWSFEEMKEYGELFFDK-GGRKITLNFAL--GDNMKIDTG-VLRKYFP 224
Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
+ + P NP F +G +S IR
Sbjct: 225 PDVFLVKITPVNPT---------------FRAL--ENGINSFIR 251
>gi|262066454|ref|ZP_06026066.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693]
gi|291379881|gb|EFE87399.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693]
Length = 284
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 32/240 (13%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R E +E +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLERQ-----------------KFKNMNEILEEISAVL 64
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
K I G GEP + D N+ +++ G ++ S + + +
Sbjct: 65 KDIKPDYITFSGSGEPTLSLDLGNISRAIKEDLKYQGKIC-----LITNSLLLADENLMK 119
Query: 233 EEIGVMLAI-SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
E + L + +L+ ++ D+ +V + + +E + + + +I E +L+
Sbjct: 120 ELEYIDLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSNYKGKIWIEIFILEN 179
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
+NDS + +N+ LK + + I N + + I + ++ +G +
Sbjct: 180 VNDSDENFVNIANFLKSEKIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGLN 239
>gi|294783714|ref|ZP_06749038.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA]
gi|294480592|gb|EFG28369.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA]
Length = 284
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 79/239 (33%), Gaps = 30/239 (12%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R + +L +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLER--------KRFKDMNEILEEISTVLKDIQPDY-- 71
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
I G GEP + D N+ K++ G + ++
Sbjct: 72 -------ITFSGSGEPTLSLDLGNISKAIKEDLKYQGKI----CLITNSLLLADENLMEE 120
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E ++ +L+ ++ D+ +V + + +E + + +I E +L+ I
Sbjct: 121 LEYIDLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSKYKGKIWIEIFILENI 180
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
NDS ++ +++ LK + + I N + + I + ++ +G +
Sbjct: 181 NDSDKNFVDIANFLKSENIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGLN 239
>gi|237739305|ref|ZP_04569786.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31]
gi|229422913|gb|EEO37960.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31]
Length = 284
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 84/239 (35%), Gaps = 32/239 (13%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R E +E +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLERK-----------------RFKDMNEILEEISAVL 64
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
K I G GEP + D N+ K++ G ++ S + + +
Sbjct: 65 KDIKPDYITFSGSGEPTLSLDLGNISKAIKEDLKYEGKIC-----LITNSLLLADENLMK 119
Query: 233 EEIGVMLAI-SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
E + L + +L+ ++ D+ +V + + +E + + + +I E +L+
Sbjct: 120 ELEYIDLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSNYKGKIWIEIFILEN 179
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
+NDS ++ +++ LK + + I N + + I + ++ +G
Sbjct: 180 VNDSDKNFVDIANFLKSENIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGL 238
>gi|218546598|gb|ACK98945.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
achromogenes]
gi|218546620|gb|ACK98959.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 43
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 350 IRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
+R RG DI AACGQL R + + MQ G
Sbjct: 2 VRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 37
>gi|291542691|emb|CBL15801.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus bromii
L2-63]
Length = 457
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/262 (17%), Positives = 85/262 (32%), Gaps = 33/262 (12%)
Query: 50 FQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP 109
M +S+ PEI E+IS L + + E +
Sbjct: 44 IDEM--LSK----------YADNPEITKEEISDCIDDVKELEEQGKLFTED-KYENLAFD 90
Query: 110 EKSRGTL----CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
K R T+ C+ C+L C +C+ K L F +
Sbjct: 91 FKKRNTVIKALCLHIAHTCNLNCEYCFASQGK--------------YHGERALMSFEVGK 136
Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-- 223
+I + G +++ V GEPL NFD VK+ ++ A R TL+T+G
Sbjct: 137 RAIDFLIENSGSRVNLEVDFFGGEPLMNFDVVKQIVAYARSIEKEHNKNFRFTLTTNGML 196
Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
++ + + +SL ++ +N K ++++ + + +
Sbjct: 197 VDDDVIEFANKECHNVVLSLDGRKEVHDHLRKTVNGKGSYDIIVPKFQEFVKKRGNKDYY 256
Query: 284 FEYVMLKGINDSPRDALNLIKI 305
D D ++ +
Sbjct: 257 VRGTYTHNNTDFTNDIFHMADL 278
>gi|237796639|ref|YP_002864191.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum Ba4 str. 657]
gi|229263902|gb|ACQ54935.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum Ba4 str. 657]
Length = 300
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 49/271 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFC--GKCTNFCPNNAREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++ ++ + E + G GEP+ + D + L
Sbjct: 107 TSQEIIKEIIKDEVFYEQSGG-------GVTFSG-GEPMLHADFINGILEECK------V 152
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
T+ TSG+V V L + N+ + + ++
Sbjct: 153 RGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELLSK 212
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC--- 328
Y I ++K +ND+ + IK + K ++NL+P++ +Y
Sbjct: 213 Y-----GHNIYLRIPIIKDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKRLKM 267
Query: 329 ---------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 268 EYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298
>gi|170761428|ref|YP_001788504.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169408417|gb|ACA56828.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 300
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 81/271 (29%), Gaps = 49/271 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G + E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFC--GKCTNFCPNSVREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++ ++ + E + G GEP+ + D + L
Sbjct: 107 TSQEIIKEIIKDEVFYEQSGG-------GVTFSG-GEPMLHADFINGILEECK------V 152
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
T+ TSG+V V L + N+ + + ++
Sbjct: 153 RGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELLSK 212
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC--- 328
Y I ++K +ND+ + IK + K ++NL+P++ +Y
Sbjct: 213 Y-----GHNIYLRIPIIKDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKRLKM 267
Query: 329 ---------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 268 EYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298
>gi|289808611|ref|ZP_06539240.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 48
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 52 GMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
M+DI++ +R L + I PE+V+E+ S DGT KW + +
Sbjct: 3 EMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ 46
>gi|254303597|ref|ZP_04970955.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323789|gb|EDK89039.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 284
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 30/235 (12%)
Query: 121 QVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
C+L C FC T +L R + +L +
Sbjct: 25 SKSCNLNCIFCECGATKKIQLER--------QRFKDMNEILNEIQSVLKDIKPDY----- 71
Query: 178 KISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
I G GEP + D N+ K++ G L + V + + I
Sbjct: 72 ----ITFSGSGEPTLSLDLGNISKAIKKDLKYKGKICLITNSLLLANEQVTKELKYIDLI 127
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
L+ + D+ +V + + ++ + + + +I E +L+ INDS
Sbjct: 128 VPT----LNTLKQDIFEKIVRPDYRTSVDEIKKGFINLNNSNYKGKIWIEIFILENINDS 183
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
+ + + L K + I N + I+ ++ +G
Sbjct: 184 EENFIEIANFLNSENIKYDKIQLNTIDRVGAERDLKAISFDKILKAKRILEENGL 238
>gi|153940128|ref|YP_001392535.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum F str. Langeland]
gi|152936024|gb|ABS41522.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum F str. Langeland]
gi|295320521|gb|ADG00899.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum F str. 230613]
Length = 300
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 49/271 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFC--GKCTNFCPNNAREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++ ++ + E + G GEP+ + D + L
Sbjct: 107 TSQEIIKEIIKDEVFYEQSGG-------GVTFSG-GEPMLHADFINGILEECK------V 152
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
T+ TSG+V V L + N+ + + ++
Sbjct: 153 RGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELLSK 212
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC--- 328
Y I ++ +ND+ + IK + K ++NL+P++ +Y
Sbjct: 213 Y-----GHNIYLRIPIINDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKRLKM 267
Query: 329 ---------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 268 EYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298
>gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas
paucivorans DSM 12260]
gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas
paucivorans DSM 12260]
Length = 301
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/244 (15%), Positives = 75/244 (30%), Gaps = 41/244 (16%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C + C C + L A E++ + L L+ + E
Sbjct: 82 SRC-VGCGVCASVCPSL-----ALELVGRTLTVPELVAEARKDELFYDQSGG-------G 128
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+ G GEPL + L ++ G + R + T GF P + L +
Sbjct: 129 VTFSG-GEPLMQPE----FLLEVLEACGAAGFHRA--VDTCGFAPEETILRVARHTDLFL 181
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
+ + L + + R+ ++ GINDSP +
Sbjct: 182 YDLKHMDPEAHRLYTGVDNVLILSNLRRLDE-----AGARLNIRVPLIPGINDSPENLDA 236
Query: 302 LIKILKGIPAKI---NLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGY 346
L + + + + NL+P++ +Y + + +E ++R G
Sbjct: 237 LGRFVASLN-HVAGLNLLPYHTAGRSKYPKWGMTYRLEETPPPTEHQVRVAAEALRRQGL 295
Query: 347 SSPI 350
I
Sbjct: 296 EVTI 299
>gi|331086093|ref|ZP_08335176.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407016|gb|EGG86521.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 303
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 21/149 (14%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI-LVPINRKYPLEMLIDACRHYP 274
+ + T G+ P V + + + ++ + + + L L
Sbjct: 157 NVAIDTCGYAPQENYERVLPYVDTFLYDIKIMDPEKHEKYMGKDNELILSNLRFISER-- 214
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC---- 328
RI ++ G+ND+ + +I LK + INL+P++ G +Y
Sbjct: 215 ----GARIYIRIPVIGGVNDTEEEMEAMITFLKQSISVSQINLLPYHNIAGGKYDKLDIR 270
Query: 329 --------SDQKDIVTFSECIKRSGYSSP 349
++ + F ++G+++
Sbjct: 271 YKGEAFTIPPKEQMEAFQRRFIQNGFANT 299
>gi|322807498|emb|CBZ05073.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
H04402 065]
Length = 300
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/271 (15%), Positives = 83/271 (30%), Gaps = 49/271 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFC--GKCTNFCPNNAREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++ ++ + E + G GEP+ + D + L F
Sbjct: 107 TSQEIIKEIIKDEVFYEQSGG-------GVTFSG-GEPMLHADFINGILEECK------F 152
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
T+ TSG+V V L + N+ + + ++
Sbjct: 153 RGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELLSK 212
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC--- 328
Y I ++K +ND+ ++ IK + K ++NL+P++ +Y
Sbjct: 213 Y-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKRLKM 267
Query: 329 ---------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 268 EYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298
>gi|317056660|ref|YP_004105127.1| Radical SAM domain-containing protein [Ruminococcus albus 7]
gi|315448929|gb|ADU22493.1| Radical SAM domain protein [Ruminococcus albus 7]
Length = 457
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 78/252 (30%), Gaps = 23/252 (9%)
Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
EV L++ + + E+I K L E + +
Sbjct: 44 PAEVIAKLSRSYPAEDIKECYEEIVSLYNDKILFS------EDDYEKYALASVASPVKAM 97
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ T + R L+ I+ ++ S
Sbjct: 98 CLHISHDCNLRCKYCFASTGDFG-------------VGRKLMDFETAKRAIDFLIEKSAD 144
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEE 234
RK + G GEP NF V K++ A + R T +T+G + +
Sbjct: 145 RKFLEVDFFG-GEPSMNFGVVMKTVEYARSREKETGKTFRFTTTTNGMHLTDEMIDFINK 203
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +S+ + V ++ + + + A R + N
Sbjct: 204 EMYNVVLSIDGRKEVNDRVRVRVDGSGSYDTITKNFKRLVDKRPADRDWYVRGTYTKYNL 263
Query: 294 DSPRDALNLIKI 305
D D ++L +
Sbjct: 264 DFSEDVMHLYDL 275
>gi|256028011|ref|ZP_05441845.1| Fe-S oxidoreductase [Fusobacterium sp. D11]
gi|260495719|ref|ZP_05815841.1| iron-sulfur dehydrogenase [Fusobacterium sp. 3_1_33]
gi|289765954|ref|ZP_06525332.1| fe-s oxidoreductase [Fusobacterium sp. D11]
gi|260196677|gb|EEW94202.1| iron-sulfur dehydrogenase [Fusobacterium sp. 3_1_33]
gi|289717509|gb|EFD81521.1| fe-s oxidoreductase [Fusobacterium sp. D11]
Length = 284
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 75/238 (31%), Gaps = 30/238 (12%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R + +L +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLKR--------QRFKDMNEILNEIQSVLKDIKPDY-- 71
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
+ G GEP + D N+ K++ G + ++
Sbjct: 72 -------VTFSGSGEPTLSLDLGNISKAIKKDLKFKGKI----CLITNSLLLADKQVIKE 120
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E ++ +L+ + D+ +V + + ++ + + + +I E +L+ I
Sbjct: 121 LEYIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNDSNYKGKIWIEIFILENI 180
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
NDS + + + L + + I N + I+ + ++ +G
Sbjct: 181 NDSEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEENGL 238
>gi|168183500|ref|ZP_02618164.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum Bf]
gi|182673358|gb|EDT85319.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum Bf]
Length = 300
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 84/273 (30%), Gaps = 53/273 (19%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFC--GKCTNFCPNNAREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++ ++ + E + G GEP+ + D + L
Sbjct: 107 TSQEIIKEIIKDEVFYEQSGG-------GVTFSG-GEPMLHADFINGILEE--------C 150
Query: 213 SKRRI--TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
R I T+ TSG+V V L + N+ + + ++
Sbjct: 151 KARGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELL 210
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC- 328
Y I ++K +ND+ ++ IK + K ++NL+P++ +Y
Sbjct: 211 SKY-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKRL 265
Query: 329 -----------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 266 KMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298
>gi|114563644|ref|YP_751157.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
frigidimarina NCIMB 400]
gi|114334937|gb|ABI72319.1| pyruvate formate-lyase activating enzyme [Shewanella frigidimarina
NCIMB 400]
Length = 245
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/246 (15%), Positives = 80/246 (32%), Gaps = 44/246 (17%)
Query: 121 QVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
GC + C +C+ T + ++ +EI+ QV+ + L G G +
Sbjct: 26 MQGCLMRCQYCHNRDTWDLDGGKEVSVDEIMSQVISYQPFLEASGGGITASGGEAILQAQ 85
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+S + K+ G+ L T+GFV V +E+
Sbjct: 86 FVS---------------ELFKACKS----QGV-----HTCLDTNGFVRKYEPVIDELLD 121
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+ L + + + + L A Y N + YV++ G +
Sbjct: 122 NTDLVLLDIKQMDDAKHIELTKVSNHRTLQFA--QYLATRN-IKTWIRYVVVAGFTEDVE 178
Query: 298 DALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
A+ L + +K + K+ L+P++P ++ + + +
Sbjct: 179 SAIALAEFIKPMSNVEKVELLPYHPLGEHKWQAFGETYTLADISPPSTEIMQRIQQVFVD 238
Query: 344 SGYSSP 349
G ++
Sbjct: 239 RGINAT 244
>gi|15222863|ref|NP_175427.1| pathogenesis-related protein, putative [Arabidopsis thaliana]
gi|332194391|gb|AEE32512.1| putative pathogenesis-related protein [Arabidopsis thaliana]
Length = 226
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 341 IKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
+K ++ +R RGL AACGQL++ ++ P
Sbjct: 156 LKSRKITASVRQTRGLGASAACGQLRNKFQKSP 188
>gi|168179167|ref|ZP_02613831.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum NCTC 2916]
gi|226950612|ref|YP_002805703.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A2 str. Kyoto]
gi|182670116|gb|EDT82092.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum NCTC 2916]
gi|226844506|gb|ACO87172.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A2 str. Kyoto]
Length = 301
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 84/273 (30%), Gaps = 53/273 (19%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFC--GKCTNFCPNNAREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++ ++ + E + G GEP+ + D + L
Sbjct: 107 TSQEIIKEIIKDEVFYEQSGG-------GVTFSG-GEPMLHADFINGILEE--------C 150
Query: 213 SKRRI--TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
R I T+ TSG+V V L + N+ + + ++
Sbjct: 151 KARGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELL 210
Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC- 328
Y I ++K +ND+ ++ IK + K ++NL+P++ +Y
Sbjct: 211 SKY-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKRL 265
Query: 329 -----------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 266 KMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298
>gi|153854548|ref|ZP_01995818.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814]
gi|149752857|gb|EDM62788.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814]
Length = 309
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 22/150 (14%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+T+ T G+VP V + V + + +Y +
Sbjct: 162 SLTIDTCGYVPYEKFEAILPYVNTFLYDVKVMDPELHK------QYIGVDNKLILDNLVK 215
Query: 276 LSN-ARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY----- 326
LS+ RI +K +N + + I+ LK PA++NL+P++ +Y
Sbjct: 216 LSDAGARIYIRIPTVKEVNGNEENMNETIRFLKEHDIHPAQVNLLPYHNTGSSKYPKLDM 275
Query: 327 -------LCSDQKDIVTFSECIKRSGYSSP 349
++++ F + + +G+S+
Sbjct: 276 EYKGNDLSAPTKEEMEGFVKLFQDAGFSNT 305
>gi|148381132|ref|YP_001255673.1| glycyl-radical activating family protein [Clostridium botulinum A
str. ATCC 3502]
gi|148290616|emb|CAL84745.1| putative pyruvate formate-lyase 2 activating enzyme [Clostridium
botulinum A str. ATCC 3502]
Length = 252
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 49/271 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 1 MFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFC--GKCTNFCPNNAREYVGKDL 58
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
+ ++ + E + G GEP+ + D + L
Sbjct: 59 TPQEIIKEIIKDEVFYEQSSG-------GVTFSG-GEPMLHADFINGILEECK------V 104
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
T+ TSG+V V L + N+ + + ++
Sbjct: 105 RGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELLSK 164
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC--- 328
Y I ++ +ND+ ++ IK + K ++NL+P++ +Y
Sbjct: 165 Y-----GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKRLKM 219
Query: 329 ---------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 220 EYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 250
>gi|157374846|ref|YP_001473446.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sediminis
HAW-EB3]
gi|157317220|gb|ABV36318.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella
sediminis HAW-EB3]
Length = 246
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 77/248 (31%), Gaps = 44/248 (17%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T R + +E++ Q++ R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLHGGREIEVDELMTQIISYRPFLEASGGGVTASGGEAIL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+S + E + D+ G P I + +
Sbjct: 84 QAEFVSALFKACKKEG----------IHTCLDTNGFVRKH----------TPVIDELLDN 123
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
++L H +D R+I + + + ++ YV++ G D
Sbjct: 124 TDLVLLDIKH--IDDKRHIDLTKVSNHRTLQFAEYL-----SKRQQKTWVRYVVVGGFTD 176
Query: 295 SPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
A L + +K + K+ L+P++ ++ + + +
Sbjct: 177 DIPSAKRLAEFIKPMKNVEKVELLPYHELGKHKWEAMGEEYELNNISPPSSETMEQIKQV 236
Query: 341 IKRSGYSS 348
+G ++
Sbjct: 237 FIDAGINA 244
>gi|170754784|ref|YP_001782823.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum B1 str. Okra]
gi|169119996|gb|ACA43832.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum B1 str. Okra]
Length = 300
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/272 (15%), Positives = 87/272 (31%), Gaps = 51/272 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKIITMKNNIPMVDEGKCNFC--GKCTNFCPNNAREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
++ ++ + E + G GEP+ + D + L
Sbjct: 107 TSQEIIKEIIKDEVFYEQSGG-------GVTFSG-GEPMLHADFINGILEECK------T 152
Query: 213 SKRRITLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
T+ TSG+V + + + L +++N++ + LE L +
Sbjct: 153 RGIHTTIDTSGYVSWDKFEKVRDKVGLFLYDLKSMNNEIHKKYTGVENTIILENLELLSK 212
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC-- 328
+ I ++ +ND+ ++ IK + K ++NL+P++ +Y
Sbjct: 213 Y------GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKRLK 266
Query: 329 ----------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 267 MEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298
>gi|153931596|ref|YP_001385507.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A str. ATCC 19397]
gi|153934810|ref|YP_001388913.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A str. Hall]
gi|152927640|gb|ABS33140.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A str. ATCC 19397]
gi|152930724|gb|ABS36223.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A str. Hall]
Length = 300
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 49/271 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+FC G A E + + L
Sbjct: 49 MFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFC--GKCTNFCPNNAREYVGKDL 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
+ ++ + E + G GEP+ + D + L
Sbjct: 107 TPQEIIKEIIKDEVFYEQSSG-------GVTFSG-GEPMLHADFINGILEECK------V 152
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
T+ TSG+V V L + N+ + + ++
Sbjct: 153 RGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTIILENLELLSK 212
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC--- 328
Y I ++ +ND+ ++ IK + K ++NL+P++ +Y
Sbjct: 213 Y-----GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKRLKM 267
Query: 329 ---------SDQKDIVTFSECIKRSGYSSPI 350
+ + +E K++G I
Sbjct: 268 EYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298
>gi|218546601|gb|ACK98947.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
masoucida]
gi|218546604|gb|ACK98949.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
salmonicida]
gi|218546606|gb|ACK98950.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
salmonicida]
gi|218546611|gb|ACK98953.1| predicted Fe-S-cluster redox enzyme [Aeromonas caviae]
Length = 41
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 351 RTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
R RG DI AACGQL R + + MQ G
Sbjct: 1 RKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 35
>gi|255523841|ref|ZP_05390805.1| glycyl-radical enzyme activating protein family [Clostridium
carboxidivorans P7]
gi|255512403|gb|EET88679.1| glycyl-radical enzyme activating protein family [Clostridium
carboxidivorans P7]
Length = 300
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/271 (17%), Positives = 84/271 (30%), Gaps = 49/271 (18%)
Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
+ + R T C C C+ C G TA E + + +
Sbjct: 49 MFFEERCTGCGICAKRCPQNAISIKEGHSVVDEEKCALC--GKCTDFCPNTAREYVGKDV 106
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
L+ + E + G GEPL + D + + L G+
Sbjct: 107 TVSELMKEIMKDEVFYDESGG-------GVTFSG-GEPLIHIDFLNEVLKKCK-EKGI-- 155
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
T+ TSG VP + V L + ++ ++I + + +
Sbjct: 156 ---HTTVDTSGCVPWESLEKILDKVDLFLYDIKFMDNEKHIKYIGSENTNILENLKKL-- 210
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLC--- 328
RI ++ G+ND + I+ L I A ++NL+P++ +Y
Sbjct: 211 ---SDKGCRIFVRMPIVAGVNDDAYHIDSAIEFLSHINAEQVNLLPYHKMGMDKYRRLKM 267
Query: 329 ---------SDQKDIVTFSECIKRSGYSSPI 350
K + S K+SG I
Sbjct: 268 TYKLSGNEKPSDKVMEEISNKFKKSGIKIKI 298
>gi|194698458|gb|ACF83313.1| unknown [Zea mays]
gi|194698542|gb|ACF83355.1| unknown [Zea mays]
gi|194707874|gb|ACF88021.1| unknown [Zea mays]
gi|195621242|gb|ACG32451.1| hypothetical protein [Zea mays]
Length = 89
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
MG+P N DNV K+ +I G FS R++T+STSGFVP + ++ A SL+A
Sbjct: 1 MGQPFHNIDNVIKASAIMVHEQGH-FSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
++++RN ++ INRK L +L+ R L +
Sbjct: 55 TDEVRNWIMTINRKENLNLLLGTLRGELNLRKKNK 89
>gi|256828649|ref|YP_003157377.1| nitrogenase cofactor biosynthesis protein NifB [Desulfomicrobium
baculatum DSM 4028]
gi|256577825|gb|ACU88961.1| nitrogenase cofactor biosynthesis protein NifB [Desulfomicrobium
baculatum DSM 4028]
Length = 418
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 42/242 (17%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC++ C++C + + + + P + +I+ +
Sbjct: 31 GCNIQCNYCN----------RKYDCVNESRPGVTSAILPPDRAVEYLDEVLKKEPRITVV 80
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240
+ G G+P+ +++ + LS++G ++ R+ E +
Sbjct: 81 GIAGPGDPMAEAKRTLETIERINAKYPNMLY----CLSSNGLALPEHVDRLAELGVTHVT 136
Query: 241 ISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
++++AV ++ + K LE +++ R + + ++
Sbjct: 137 VTMNAVDPEIGAKIYSWVRVGKVVYRGVEGAKILLERQLESIR--LLKAKGITVKVNSII 194
Query: 289 LKGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEY---LCSDQKDIVTFSECIKR 343
+ G+ND A + I NLIP +P + ++ I ++
Sbjct: 195 IPGVNDHHLIEVAKVAASLGADIQ---NLIPLHPTADTPFAGVEEPTKELIHE----LRA 247
Query: 344 SG 345
G
Sbjct: 248 KG 249
>gi|325679260|ref|ZP_08158847.1| six-Cys-in-45 modification radical SAM protein [Ruminococcus albus
8]
gi|324109046|gb|EGC03275.1| six-Cys-in-45 modification radical SAM protein [Ruminococcus albus
8]
Length = 457
Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 79/252 (31%), Gaps = 23/252 (9%)
Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
++V L++ + E E+I K L E + +
Sbjct: 44 PKDVMDRLSRTYPAEEVEECYEEIVSLYNDKILFS------EDDYEKFALASVASPIKAM 97
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ T R L+ I+ ++ S G
Sbjct: 98 CLHVSHDCNLRCKYCFASTGDFG-------------EGRKLMDFETAKRAIDFLIEKSYG 144
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEE 234
RK + G GEP NFD V K++ A R T +T+G ++
Sbjct: 145 RKFLEVDFFG-GEPSMNFDVVMKTVEYARSREKECDKVFRFTTTTNGMHLTDDMIDFINR 203
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +S+ + V ++ +++ + + + N
Sbjct: 204 EMYNVVLSIDGRKEVNDRVRVRVDGTGCYDLITKNFKRLVDKRGNDKDWYVRGTYTKYNL 263
Query: 294 DSPRDALNLIKI 305
D D ++L +
Sbjct: 264 DFSEDVMHLYDL 275
>gi|237743605|ref|ZP_04574086.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1]
gi|229432636|gb|EEO42848.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1]
Length = 287
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 30/238 (12%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R + +L +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLKR--------QRFKDMNEILNEIQSVLKDIKPDY-- 71
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
+ G GEP + D N+ K++ G + ++
Sbjct: 72 -------VTFSGSGEPTLSLDLGNISKAIKKDLKFKGKI----CLITNSLLLADKQVIKE 120
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E ++ +L+ + D+ +V + + ++ + + + +I E +L+ I
Sbjct: 121 LEYIDLIIPTLNTLRQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENI 180
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
ND+ + + + L + + I N + I+ + ++ +G
Sbjct: 181 NDNEENFIEIANFLNSENIRYDRIQLNTIDRVGAERDLKAISFDKILKAKKILEENGL 238
>gi|298530635|ref|ZP_07018037.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510009|gb|EFI33913.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 311
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 23/224 (10%)
Query: 124 CSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
CS C +C T + +VR R ++E + + G K
Sbjct: 28 CSFDCLYCESGPTTQKTIVR--------------REYADSGIILAELEKWLNDNQGDKPD 73
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
+I + G GEP N + K + S G + V+
Sbjct: 74 HITLGGEGEPCLNL-QLGKIIRDIKKIEPDIPLAVLTNSSLLGDPQVRKELRNADVVLP- 131
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
SL + + L ++ + + + R+ E +++ GINDS +
Sbjct: 132 -SLDTLVQEEFIRLNRPCAGLDIQEIARGLEAFCKEFSG-RVLLEILLVPGINDSRENME 189
Query: 301 NLIKILKGIPA-KINLIPFN-PWPGCEYLCSDQKDIVTFSECIK 342
+ LK + +++L + P + D + + + + +
Sbjct: 190 KITVFLKNLDHERVDLSVMSRPGAHMQLKTPDHETLHRWQKALH 233
>gi|154491018|ref|ZP_02030959.1| hypothetical protein PARMER_00935 [Parabacteroides merdae ATCC
43184]
gi|154088766|gb|EDN87810.1| hypothetical protein PARMER_00935 [Parabacteroides merdae ATCC
43184]
Length = 62
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF 50
MN +K L+GM +EL+ + G+P Q+ W+Y + DF
Sbjct: 1 MN--EKRRLLGMTLDELKGVAFEAGLPG----YAAKQMADWLYKKK-SDF 43
>gi|325662287|ref|ZP_08150902.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471539|gb|EGC74760.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 303
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 21/149 (14%)
Query: 216 RITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
+ + T G+ P + + + + + + L L
Sbjct: 157 NVAIDTCGYAPQENYERVLPYVDTFLYDIKTMDPEKHEKYIGKDNELILSNLRFISER-- 214
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC---- 328
RI ++ G+ND+ + +I LK + INL+P++ G +Y
Sbjct: 215 ----GARIYIRIPVIGGVNDTEEEMEAMITFLKQSISVSQINLLPYHNIAGGKYDKLDIR 270
Query: 329 --------SDQKDIVTFSECIKRSGYSSP 349
++ + F ++G+++
Sbjct: 271 YKGEAFTIPPKEQMEAFQRQFIQNGFANT 299
>gi|227486366|ref|ZP_03916682.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
lactolyticus ATCC 51172]
gi|227235547|gb|EEI85562.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
lactolyticus ATCC 51172]
Length = 239
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 38/209 (18%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
V GC L C FC+ T + R++T EEI+ + L + + G G + S
Sbjct: 21 VFFLSGCPLRCVFCHNPDTQSLDYGRDVTVEEIVKRALRMKPYFKNGGGVTLSGGEPLAS 80
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
L + K ++ +A D+ G G +
Sbjct: 81 GAF------------VLETIRALHKEAIHVAVDTSG------------VGDEKYYDDIAR 116
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E ++L H + + N + L +++ + R+ +VM+ +
Sbjct: 117 EADLILLDIKH--YDPYFFYEITKNYQDKLIKFMESIK-----KTDTRVWIRHVMMPFVT 169
Query: 294 DSPRDALNLIKILKGIPA---KINLIPFN 319
D+ D L+ ++ I A KI ++P++
Sbjct: 170 DTKEDMDGLVDFIRPIKANIDKIEILPYH 198
>gi|218709044|ref|YP_002416665.1| pyruvate formate lyase-activating enzyme 1 [Vibrio splendidus
LGP32]
gi|218322063|emb|CAV18128.1| Pyruvate formate-lyase 1-activating enzyme [Vibrio splendidus
LGP32]
Length = 246
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 34/265 (12%), Positives = 82/265 (30%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC + C +C+ T + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCMYCHNRDTWELHDGKEVTVEEIINEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G +
Sbjct: 67 MKASGGGITCSGGEAMLQPEFVRDFFRAAQAEG----------IHTCLDTNGYIRKHTEV 116
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
E ++ + L + +++ + + ++ + L+ Y
Sbjct: 117 V-----------DEVLEASDLVMLDLKHMRDEIHHDFIGVSNRRTLD-----FARYL-HK 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D+P DA L + +K + K+ L+P++ ++
Sbjct: 160 IGKKTWIRYVIVPGYTDTPEDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGHDYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 220 EGTNPPSKEKMDEIVAILSQYHSNV 244
>gi|86148860|ref|ZP_01067118.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222]
gi|85833353|gb|EAQ51553.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222]
Length = 246
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 34/265 (12%), Positives = 82/265 (30%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC + C +C+ T + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCMYCHNRDTWDLHDGKEVTVEEIINEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G +
Sbjct: 67 MKASGGGITCSGGEAMLQPEFVRDFFRAAQAEG----------IHTCLDTNGYIRKHTEV 116
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
E ++ + L + +++ + + ++ + L+ Y
Sbjct: 117 V-----------DEVLEASDLVMLDLKHMRDEIHHDFIGVSNRRTLD-----FARYL-HK 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D+P DA L + +K + K+ L+P++ ++
Sbjct: 160 IGKKTWIRYVIVPGYTDTPEDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGHDYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 220 EGTNPPSKEKMDEIVAILSQYHSNV 244
>gi|237742865|ref|ZP_04573346.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13]
gi|229430513|gb|EEO40725.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13]
Length = 284
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 74/238 (31%), Gaps = 30/238 (12%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R + +L +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLER--------QRFKNMNEILNEIQSVLKDIKPDY-- 71
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
I G GEP + D N+ K++ G + ++
Sbjct: 72 -------ITFSGSGEPTLSLDLGNISKAIKEDLKYKGKI----CLITNSLLLADKQVINE 120
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E ++ +L+ + D+ +V + + ++ + + + +I E +L+ I
Sbjct: 121 LEYIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENI 180
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
ND+ + + + L + + I N + I+ + ++ G
Sbjct: 181 NDNEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEEYGL 238
>gi|225569142|ref|ZP_03778167.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
15053]
gi|225161941|gb|EEG74560.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
15053]
Length = 302
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 86/286 (30%), Gaps = 36/286 (12%)
Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
+ LL+ + + + R C S V C G R L
Sbjct: 23 FFKGCLLKCLWCHNPETQCFKPQLLCDSERCAGCGSCAVVCPQNAVREEAGKMVTDRKLC 82
Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPS-------VGRKISNIVMMGMGEPLCNFDN 196
V L + G E ++ + + G + + D
Sbjct: 83 TGCGTC-VDSCNLNLREVAGKEYTVSELVKELRKDEMFYEESGGGVTLSGGEVMMADMDY 141
Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILV 255
V++ + D MG+ + + T G P + + N++ +
Sbjct: 142 VEELVKRL-DRMGI-----SVAIDTCGQAPYENFERLLPYTDTFLYDIKTMDNEIHKKYM 195
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AK 312
+ + LE L S RI +++ +N + D +I+ L+ A
Sbjct: 196 GMGNEQILENLERIS------SKGARIYIRIPVIREVNGTKEDMEEIIRYLREKQIRVAN 249
Query: 313 INLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSGY 346
INL+P++ +Y +++ F K+SG+
Sbjct: 250 INLLPYHNTGSGKYEKLGLTYGGTKLHAPSGEEMEQFVTLFKQSGF 295
>gi|294056359|ref|YP_003550017.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
gi|293615692|gb|ADE55847.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
Length = 428
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 73/228 (32%), Gaps = 28/228 (12%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C+++C+FC + N + + ++ + L + KIS +
Sbjct: 33 KCNVSCNFC--NRKFDCVNESRPGVTSNIMTPKQAL--------EYTKKVLGKSEKISVV 82
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ G G+P N + ++ + + + + G +P + R+ + I+
Sbjct: 83 GIAGPGDPFANPEETMETFELVRQEY--PNTMLCVASNGLGILPYVDRLAALKVSHVTIT 140
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS----------NARRITFEYVMLKGI 292
++ + D+ + R A + + +++ G+
Sbjct: 141 VNGIDPDVVAEVYAWARADKKVYRGQAMGEMIVKRQLEAIRAIRAHGIMVKINSIIIPGV 200
Query: 293 NDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLC---SDQKDIVT 336
ND + + K +N IP P + DQK I
Sbjct: 201 NDH--HIPEISNMAKEHGCEMMNCIPMIPVENTPFESLGEPDQKMIAR 246
>gi|34762773|ref|ZP_00143761.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887574|gb|EAA24655.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 284
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 30/238 (12%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R + +L +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLER--------QRFKNMNEILNEIQSVLKDIKPDY-- 71
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
I G GEP + D N+ K++ G + ++
Sbjct: 72 -------ITFSGSGEPTLSLDLGNISKAIKEDLKYKGKI----CLITNSLLLADKQVINE 120
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E ++ +L+ + D+ +V + + ++ + + + +I E +L+ I
Sbjct: 121 LEYIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENI 180
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
ND+ + + + L + + I N I+ + ++ G
Sbjct: 181 NDNEENFIEIANFLNSENIRYDKIQLNTIDRVGAERNLKAISFDKILKAKKILEEYGL 238
>gi|170727228|ref|YP_001761254.1| pyruvate formate lyase-activating enzyme 1 [Shewanella woodyi ATCC
51908]
gi|169812575|gb|ACA87159.1| pyruvate formate-lyase activating enzyme [Shewanella woodyi ATCC
51908]
Length = 246
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 80/248 (32%), Gaps = 44/248 (17%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T +++ EE++ Q++ R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLHGGKDIEVEELMSQIISYRPFLESSGGGVTASGGEAIL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+S + E + D+ G R+ T P I + +
Sbjct: 84 QAEFVSALFEACKKEG----------IHTCLDTNG---FVRKYT-------PIIDELLDN 123
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
++L H +D R+I + + + ++ YV++ G D
Sbjct: 124 TDLVLLDIKH--IDDQRHIDLTKVSNHRTLQFAEHLH-----KRQQKTWIRYVVVGGYTD 176
Query: 295 SPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
A L LK + K+ L+P++ ++ + + +
Sbjct: 177 DIDSAKKLADFLKPMTNVEKVELLPYHELGKHKWEAMGEEYELNDISPPSGETMEQIKKV 236
Query: 341 IKRSGYSS 348
+G ++
Sbjct: 237 FVDAGLNA 244
>gi|294784683|ref|ZP_06749971.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27]
gi|294486397|gb|EFG33759.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27]
Length = 284
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 30/238 (12%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R + +L +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLER--------QRFKNMNEILNEIQSVLKDIKPDY-- 71
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
I G GEP + D N+ K++ G L V N
Sbjct: 72 -------ITFSGSGEPTLSLDLGNISKAIKEDLKYKGKICLITNSLLLADKQVINELEYI 124
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+ ++ +L+ + D+ +V + + ++ + + + +I E +L+ I
Sbjct: 125 D----LIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENI 180
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
ND+ + + + L + + I N I+ + ++ G
Sbjct: 181 NDNEENFIEIANFLNSENIRYDKIQLNTIDRVGAERNLKAISFDKILKAKKILEEYGL 238
>gi|282882974|ref|ZP_06291578.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B]
gi|281297181|gb|EFA89673.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B]
Length = 449
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 94/271 (34%), Gaps = 28/271 (10%)
Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
+ +Y + I DF+ ++ R + + +P + E+ + K+L+
Sbjct: 28 QAVY-KIIDDFKDLT------RTEILSKYRDEFPLVQLEEAYDE--VKFLVDEEMLFTED 78
Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
++ +Y P +C++ C+L C +C+ + LL
Sbjct: 79 AKYLKPMYNPANIIKAMCLNVAHDCNLRCKYCFASQGDFKG--------------KRLLM 124
Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
D +D +I S G + + V GEPL NF+ VKK + R T+
Sbjct: 125 DLQTGKDALDFLIKSSGYRRNLEVDFFGGEPLMNFEVVKKLVEYGRIQEKKYNKHFRFTI 184
Query: 220 STSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+T+G + E +SL + IN K ++++ +
Sbjct: 185 TTNGTYLTDDKIDFINENMDNCVLSLDGRKCVNDYMRPTINGKGSFDIIVPKFKKLISKR 244
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ N++ + +L++ K
Sbjct: 245 GDKDYFIRGTF---TNENLDFSEDLMEFYKQ 272
>gi|227500369|ref|ZP_03930431.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
tetradius ATCC 35098]
gi|227217432|gb|EEI82751.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
tetradius ATCC 35098]
Length = 239
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 36/217 (16%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
V GC L C FC+ T + R++T EEI+ + + + G G +
Sbjct: 21 VFFLSGCPLRCVFCHNPDTQSPNYGRDITIEEIVDRAKRMKPYYKNTGGVTISGGEPMND 80
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + +L + +T+ TSG +
Sbjct: 81 GKFLVD----------------LIDALHKENI---------HVTVDTSGIGDSKYYEEIA 115
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L + + + + ++ L + Y R+ +VM+ + D
Sbjct: 116 QKADLFLLDIKHYDPEKFERITKAKQDLLVKFM-----YQISKTNTRVWIRHVMMPQVTD 170
Query: 295 SPRDALNLIKILKGIPA---KINLIPFNPWPGCEYLC 328
+ D L++ +K + KI ++P++ +Y
Sbjct: 171 TREDMERLVEFIKPLKKNIDKIEILPYHTLGVEKYKK 207
>gi|127513319|ref|YP_001094516.1| pyruvate formate lyase-activating enzyme 1 [Shewanella loihica
PV-4]
gi|126638614|gb|ABO24257.1| pyruvate formate-lyase activating enzyme [Shewanella loihica PV-4]
Length = 246
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 38/245 (15%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
++ GC + C +C +L + +L ++ P E G V S G
Sbjct: 24 ITFMQGCLMRCQYC-HNRDTW--DLHGGHEIEVDVLMEQIISYRPFLESSGGGVTASGGE 80
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
I + + K+ L T+GFV V +E+
Sbjct: 81 AILQAEFVA---------ALFKACKAQGI---------HTCLDTNGFVRKYTPVIDELLD 122
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+ L + + + + + L A Y +++ YV++ G D
Sbjct: 123 NTDLVLLDIKHIDDDQHIALTHVSNHRTLQFA--QYLQKR-QQKVWIRYVVVGGYTDDIA 179
Query: 298 DALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
A L + +K + K+ L+P++ ++ ++ + +
Sbjct: 180 SAKGLAEFIKPMTNVEKVELLPYHELGKHKWEAMGEEYTLKDISPPSRETMEQIKQVFVE 239
Query: 344 SGYSS 348
+G ++
Sbjct: 240 AGITA 244
>gi|307243816|ref|ZP_07525947.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
gi|306492819|gb|EFM64841.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
Length = 457
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 47/335 (14%), Positives = 104/335 (31%), Gaps = 51/335 (15%)
Query: 46 GIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET 105
+ DF +D+ +++ LL F E+I L +
Sbjct: 32 RVLDFYKENDL-EDIVELLAGEFEADKVREAYEEIKNLEEEGLLY-----SEDEYKFHPS 85
Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
+ LC++ C+L C +C+ L+ G +
Sbjct: 86 FVNRQPVVKALCLNVAHDCNLKCKYCFAKQGDFGGK-------------AELMPLEVGKK 132
Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
++ ++ S R+ I G GEPL N+ VK+ + + + R T++T+G +
Sbjct: 133 ALDYLIANSGNRRNLEIDFFG-GEPLMNWPVVKELVKYGREVEKPAGKNIRFTITTNGVL 191
Query: 226 --PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
E + +SL + ++ +N K ++++ + +
Sbjct: 192 LDDEKIDFINEHMHNVVLSLDGRKDVNDSMRPTVNDKGSYDIIVPKFQKLVSQRPKDKYY 251
Query: 284 FEYVMLKGIN-DSPRDALNLIKILKGIPAKINLIPF-----NPWPGCEYLCSDQ-KDIVT 336
+ N D D + + + + + P NP+ E ++ +
Sbjct: 252 YVRGTFTRDNLDFSEDVKHFADLGFELTS---IEPVVDDETNPFALREEDLPKIFEEYES 308
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
F++ + QL+ +
Sbjct: 309 FADELADR-------------------QLRGEKMK 324
>gi|153835535|ref|ZP_01988202.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01]
gi|148867892|gb|EDL67111.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01]
Length = 246
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 29/266 (10%), Positives = 76/266 (28%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + V Q GC + C +C + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCKYC-HNRDTWDTHDGKEVTVEEIIAEAKTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + E + D+ G
Sbjct: 66 FMNASGGGITCSGGEAMLQPEFVRDFFRAAQAEG----------IHTCLDTNGYIRKH-- 113
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
++ + ++ + L + +++ + ++ + +
Sbjct: 114 ---------TDVIDEVLDATDLVMLDLKHMKDEIHQEFIGVSNR-RVLDFARYLHKI--- 160
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------- 327
++ YV++ G D P A L + +K + K+ L+P++ ++
Sbjct: 161 --GQKTWIRYVVVPGYTDEPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGVEYP 218
Query: 328 -----CSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 219 LDGVNPPSKETMDEIQSILSQYHSNV 244
>gi|118444335|ref|YP_877304.1| glycerol dehydratase activator [Clostridium novyi NT]
gi|118134791|gb|ABK61835.1| glycerol dehydratase activator [Clostridium novyi NT]
Length = 304
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKIN---LIPFNPWPGCEY------------ 326
I +++G N + ++ + K + K+N L+P++ + +Y
Sbjct: 220 IIIRVPVIEGFNSDEKSIRDIAEFAKTLN-KVNRIDLLPYHSYGENKYETIGRNYFLKDL 278
Query: 327 LCSDQKDIVTFSECIKRSGYSSPI 350
+ F + ++ G I
Sbjct: 279 KPPSDDKMNYFKKIVEDMGLICTI 302
>gi|300813209|ref|ZP_07093577.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp.
oral taxon 836 str. F0141]
gi|300512662|gb|EFK39794.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp.
oral taxon 836 str. F0141]
Length = 449
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 94/271 (34%), Gaps = 28/271 (10%)
Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
+ +Y + I DF+ ++ R + + +P + E+ + K+L+
Sbjct: 28 QAVY-KIIDDFKDLT------RTEILSKYKDEFPLVQLEEAYDE--VKFLVDEEMLFTED 78
Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
++ +Y P +C++ C+L C +C+ + LL
Sbjct: 79 AKYLKPMYNPANIIKAMCLNVAHDCNLRCKYCFASQGDFKG--------------KRLLM 124
Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
D +D +I S G + + V GEPL NF+ VKK + R T+
Sbjct: 125 DLQTGKDALDFLIKSSGYRRNLEVDFFGGEPLMNFEVVKKLVEYGRIQEKKYNKHFRFTI 184
Query: 220 STSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+T+G + E +SL + IN K ++++ +
Sbjct: 185 TTNGTYLTDDKIDFINENMDNCVLSLDGRKCVNDYMRPTINGKGSFDIIVPKFKKLISKR 244
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ N++ + +L++ K
Sbjct: 245 GDKDYFIRGTF---TNENLDFSEDLMEFYKQ 272
>gi|188579343|ref|YP_001922788.1| radical SAM domain protein [Methylobacterium populi BJ001]
gi|179342841|gb|ACB78253.1| Radical SAM domain protein [Methylobacterium populi BJ001]
Length = 367
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 27/252 (10%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ Q + TC FC G A + Q+ +AR+ + + P+
Sbjct: 121 TCIRYQSR-TKTCQFCSIGQSLAAGRTVAHKSPEQLAEVARAAVLLDGVKHMVMTTGTPN 179
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ D + + G
Sbjct: 180 ATDRGAAVLCESAFAVKAAVDLPIQAQCEPPDDDRWFERMKASGIDALGI---------- 229
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ ++R ++P LE A L R +L G+ D
Sbjct: 230 -------HLEAVTPEVRARIMPGKASVTLERYQAAFEAAVPLFG--RGQVSTYILAGLGD 280
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
+P L + + L I ++PF P G + E + + +R
Sbjct: 281 TPEAILAMAERLIAIGVYPFVVPFVPISGTPLESHPAPSPAFMHAILEPLAAMLTGADLR 340
Query: 352 TPRGLDILAACG 363
+ DI A CG
Sbjct: 341 ST---DIKAGCG 349
>gi|326791643|ref|YP_004309464.1| radical SAM protein [Clostridium lentocellum DSM 5427]
gi|326542407|gb|ADZ84266.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
Length = 449
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 21/252 (8%)
Query: 56 ISQ-EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
+S+ + + F I E++ L + E
Sbjct: 38 LSKEALIEKYKEEFEIEAINEAYEELMSLKEEGMLYTADQYET----LVPAFLNREPVVK 93
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
LC+ C+L C +C+ G + + RSL+ G + ++ ++ S
Sbjct: 94 ALCLHVAHDCNLKCKYCFAGEGEYHGH-------------RSLMSIEVGKKAVDFIIENS 140
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
RK I G GEPL N++ VK++++ A + + R T++T+G + I
Sbjct: 141 KHRKNIEIDFFG-GEPLMNWEMVKETVAYAREREKETGKNFRFTMTTNGVLLNDEIIDYL 199
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E + +SL ++ N K ++++ + ++
Sbjct: 200 NENMHNVVLSLDGRPEVNDHMRPTANGKGSYDVILPKFKKLVEKRGNQKYYLRGTFTHHN 259
Query: 293 NDSPRDALNLIK 304
D D ++ +
Sbjct: 260 LDFSEDVKHMTE 271
>gi|210623789|ref|ZP_03294049.1| hypothetical protein CLOHIR_02000 [Clostridium hiranonis DSM 13275]
gi|210153371|gb|EEA84377.1| hypothetical protein CLOHIR_02000 [Clostridium hiranonis DSM 13275]
Length = 465
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 22/251 (8%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
LL F+ E ++I+ L E LC++
Sbjct: 52 ELLKDEFTKEQVEEAWDEIANLEEEGLLYT-----EDNYQFHPAFVHREPVVKALCLNVA 106
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C+L C +C+ L+ G ++ +V S R+ +
Sbjct: 107 HDCNLKCKYCFAKQGNFGGKP-------------ELMSFEVGKRALDFLVANSGSRRNLD 153
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239
I G GEPL NF+ VK+ + R T++T+G + I E +
Sbjct: 154 IDFFG-GEPLMNFEVVKQLVEYGRSIEKEHGKNMRFTITTNGLLLNDEIIDYINENMHNV 212
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRD 298
+SL N+ + IN K ++++ + + + N D +D
Sbjct: 213 VLSLDGRKAVNDNMRMTINDKGSYDVIVPKMQKLVEKRPKDKYYYVRGTFTRENLDFSKD 272
Query: 299 ALNLIKILKGI 309
L+ + +
Sbjct: 273 ILHFRDLGFEL 283
>gi|269960975|ref|ZP_06175344.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3]
gi|269834194|gb|EEZ88284.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3]
Length = 246
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 29/266 (10%), Positives = 76/266 (28%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + V Q GC + C +C + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCKYC-HNRDTWDTHDGKEVTVEEIIAEAKTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + E + D+ G
Sbjct: 66 FMNASGGGVTCSGGEAMLQPEFVRDFFRAAQAEG----------IHTCLDTNGYIRKH-- 113
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
++ + ++ + L + +++ + ++ + +
Sbjct: 114 ---------TDVIDEVLDATDLVMLDLKHMKDEIHQDFIGVSNR-RVLDFARYLHKI--- 160
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------- 327
++ YV++ G D P A L + +K + K+ L+P++ ++
Sbjct: 161 --GQKTWIRYVVVPGYTDEPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYP 218
Query: 328 -----CSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 219 LDGVNPPSKETMDEIQSILSQYHSNV 244
>gi|307107693|gb|EFN55935.1| hypothetical protein CHLNCDRAFT_57698 [Chlorella variabilis]
Length = 332
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 68/240 (28%), Gaps = 37/240 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC L C FC N + L + L G I
Sbjct: 105 GCGLRCVFCS--------NPDTWHMARGKLTSSKDLAKKLERVKPYLSQGDHKG----GI 152
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ G GEPL S+ + + + GL+ I + G +
Sbjct: 153 TISG-GEPLL-QPEFTASVLMEAHTRGLTT---CIDTTGQGMKHSHWDKVLPHLDYALFC 207
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
+ + + + L + + R YVML G D P D L
Sbjct: 208 IKSPIPEKYEWITKRKIGPALGFVDELERR------QIPYWLRYVMLPGKTDQPEDVAAL 261
Query: 303 IKILKGIPAK--INLIPFN------------PWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
I+ + + I ++P++ +P +++ F +K +G
Sbjct: 262 IQFCRNKRSMQAIEVLPYHLLGVEKWASEGKEYPLTGMSSPSAEEVNAFLAPLKEAGIPV 321
>gi|255030887|ref|ZP_05302838.1| hypothetical protein LmonL_20406 [Listeria monocytogenes LO28]
Length = 39
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
IR G DI AACGQL+S + V + Q
Sbjct: 1 IRREHGTDIDAACGQLRSKQIKRVGVRERMKQ 32
>gi|134291461|ref|YP_001115230.1| radical SAM domain-containing protein [Burkholderia vietnamiensis
G4]
gi|134134650|gb|ABO58975.1| Radical SAM domain protein [Burkholderia vietnamiensis G4]
Length = 356
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 43/256 (16%), Positives = 77/256 (30%), Gaps = 35/256 (13%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 115 TCMRYESR-RKTCQFCSIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPP 173
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ D G + + T G
Sbjct: 174 TPDRGARVLCESAFAIKAAVDLPIQAQCEPPDDDGWFDRMKASGIDTLGM---------- 223
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ +R ++P PL + A R + R +L G+ D
Sbjct: 224 -------HLEAVTPAVRERIMPGKASVPLSRYMSAFRAAVAVFG--RGQVSTYILAGLGD 274
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSECIKRSGYS 347
S L++ + L + ++PF P G + ++ +G
Sbjct: 275 SEAAILDMSRELIDLGVYPFVVPFVPISGTPLESHPAPSPDFMRAVLAPLGAMLRDAGM- 333
Query: 348 SPIRTPRGLDILAACG 363
R DI A CG
Sbjct: 334 ------RSADIKAGCG 343
>gi|160893377|ref|ZP_02074163.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50]
gi|156864952|gb|EDO58383.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50]
Length = 454
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 37/247 (14%), Positives = 82/247 (33%), Gaps = 21/247 (8%)
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL----CVSS 120
+ + P +++S L + + I K R T+ C++
Sbjct: 40 KEQVMELLPSYDKDEVSEAYDEVTGL-VEDGTLFTEDIFKDYIIDFKKRKTVVKALCINI 98
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
C+L C +C+ G + + L + ++ + G +++
Sbjct: 99 AHDCNLACRYCFAGEGEYKGD--------------RGLMPLDIAKKSLDFLVANSGNRVN 144
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVM 238
V GEPL N+D VK+++ K R TL+T+G + + +
Sbjct: 145 LEVDFFGGEPLMNWDVVKETVRYGRSLEEKHNKKFRFTLTTNGVLLNDEVMEFANKEMAN 204
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ +S+ + N K ++L+ + + + D +D
Sbjct: 205 VVLSIDGRKEIHDYMRPTRNGKGSYDLLLPKFQEFAKKRAGKSYYVRGTYTHNNLDFSKD 264
Query: 299 ALNLIKI 305
L++ +
Sbjct: 265 VLHMADL 271
>gi|167759297|ref|ZP_02431424.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704]
gi|167663171|gb|EDS07301.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704]
Length = 302
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 43/293 (14%), Positives = 84/293 (28%), Gaps = 50/293 (17%)
Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT---------------C 128
+ LR + + + R T C + + C C
Sbjct: 23 FFKGCQLRCVWCHNPETQSYKKQMLYDAERCTGCRNCEPACPNRAIRGEEGKVFTDMRLC 82
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
C T +NL EI+ + L+ + E + + G
Sbjct: 83 DGCGTCVDFCNQNLR--EIVGREYSVDELVKELKKDEMFYEESGG-------GVTLSGGE 133
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
+ D V++ G+ +T+ T G P V + +
Sbjct: 134 VMTADMDYVEELAKKLY-RHGI-----TVTIDTCGQAPYENFARILPYVDTFLYDIKTMD 187
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ + ++ + RI +K +N + D +IK L+
Sbjct: 188 SQIHKKYMGAGNETILSNLERL-----SAAGARIYIRIPTIKEVNGTDEDMKAMIKYLQE 242
Query: 309 IP---AKINLIPFNPW------------PGCEYLCSDQKDIVTFSECIKRSGY 346
A INL+P++ G E +++++ F + K SG+
Sbjct: 243 KNIRVANINLLPYHNTGSGKYEKIGRTYDGTELHAPEKEEMEHFVDLFKESGF 295
>gi|330836098|ref|YP_004410739.1| glycyl-radical enzyme activating protein family [Spirochaeta
coccoides DSM 17374]
gi|329748001|gb|AEC01357.1| glycyl-radical enzyme activating protein family [Spirochaeta
coccoides DSM 17374]
Length = 252
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 44/261 (16%), Positives = 83/261 (31%), Gaps = 38/261 (14%)
Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
+ GC+L C +C VR E + ++ +L D
Sbjct: 12 CLHDGPGIRSTIFF--KGCNLRCHWCANPESISMKVRPELEESLGGRIWKLEEVLHDVLK 69
Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
+ V + GEPL D +L A + G++ + + T+
Sbjct: 70 DKVFYDESGGG--------VTLSGGEPLLQAD-FACALCDALHAHGVA-----VAIETAA 115
Query: 224 FVPNIARVGEEIGVMLA-ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
VP + + +A I L ++ L + A + + +
Sbjct: 116 CVPEQTFMKVFEKLDVAHIDLKHWNDASYRQGTGAGIDLVLSNIRRAL------AGSIPV 169
Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYLCSD----------- 330
++ G NDS DA +L + A + L+PF+ + +Y
Sbjct: 170 FLRIPIIPGFNDSLEDARQFGNVLADVGANAVQLLPFHQFGEKKYEKLALEYSMNGIAQL 229
Query: 331 -QKDIVTFSECIKRSGYSSPI 350
+D+ ++ +K SG I
Sbjct: 230 HDEDVQDYASVLKESGLHVQI 250
>gi|84393746|ref|ZP_00992494.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus
12B01]
gi|84375608|gb|EAP92507.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus
12B01]
Length = 246
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC + C +C+ T + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCMYCHNRDTWDLHDGKEVTVEEIINEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G +
Sbjct: 67 MKASGGGITCSGGEAMLQPEFVRDFFQAAQAEG----------IHTCLDTNGYIRKHTEV 116
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
E ++ + L + +++ + + ++ + L+ Y
Sbjct: 117 V-----------DEVLEASDLVMLDLKHMRDEIHHDFIGVSNRRTLD-----FARYL-HK 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D+P DA L + +K + KI L+P++ ++
Sbjct: 160 IGKKTWIRYVIVPGYTDTPEDAHLLGEFIKDMDNIEKIELLPYHKLGAHKWEALGYDYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 220 EGTNPPSKEKMDEIVAVLSQYHSNV 244
>gi|256846200|ref|ZP_05551658.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_36A2]
gi|256719759|gb|EEU33314.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_36A2]
Length = 284
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 30/238 (12%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R +L +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLER--------QSFKNINEILNEIQSVLKDIKPDY-- 71
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
I G GEP + D N+ K++ G + ++
Sbjct: 72 -------ITFSGSGEPTLSLDLGNISKAIKKDLKYKGKI----CLITNSLLLADKQVINE 120
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E ++ +L+ ++ D+ +V + K ++ + + + I E +L+ I
Sbjct: 121 LEYIDLIIPTLNTLNQDIFEKIVRPDYKTNVDEIRKGFINLNNSNYKGEIWIEIFILENI 180
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
ND+ + + + L + + I N + I+ + ++ G
Sbjct: 181 NDNEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEEYGL 238
>gi|168185707|ref|ZP_02620342.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C
str. Eklund]
gi|169296263|gb|EDS78396.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C
str. Eklund]
Length = 304
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKIN---LIPFNPWPGCEY------------ 326
I +++G N + ++ + K + K+N L+P++ + +Y
Sbjct: 220 IIIRIPVIEGFNSDEKSIRDIAEFAKTLN-KVNRIDLLPYHSYGENKYETIGRNYFLKNL 278
Query: 327 LCSDQKDIVTFSECIKRSGYSSPI 350
I F E ++ G S I
Sbjct: 279 KPPSNDKINYFKEIVEGMGLSCTI 302
>gi|258513074|ref|YP_003189331.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-01]
gi|256634977|dbj|BAI00952.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-01]
gi|256638032|dbj|BAI04000.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-03]
gi|256641086|dbj|BAI07047.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-07]
gi|256644141|dbj|BAI10095.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-22]
gi|256647196|dbj|BAI13143.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-26]
gi|256650249|dbj|BAI16189.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-32]
gi|256653240|dbj|BAI19173.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256656293|dbj|BAI22219.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
pasteurianus IFO 3283-12]
Length = 369
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 44/267 (16%), Positives = 77/267 (28%), Gaps = 40/267 (14%)
Query: 111 KSRGTLCVSSQVGC------SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
R TL + C +C FC G A + Q+ + G
Sbjct: 116 HGRDTLATTVHQTCIRYADRRTSCQFCAIGQSLEADRTIAYKTPAQLAEVAKAAVELDGV 175
Query: 165 EDIE-GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
D+ P+V + + ++ D + G R + G
Sbjct: 176 RDMVLTTGTPNVVDRGAAVLAESARAIKAAVDLPLQVQCEPPRDHGWFQRLREAGADSLG 235
Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
L A + +R ++P ++ +DA + R
Sbjct: 236 M-----------------HLEAATQAVREKIMPGKATVSVDRYMDAFA--SAVPIFGRGQ 276
Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT---- 336
+L G+ DSP D L L + L + ++PF P G + + +
Sbjct: 277 VNTYILAGLGDSPEDILALAERLIALGVYPFVVPFVPISGTPLENHVPPSAEFMKSVLAP 336
Query: 337 FSECIKRSGYSSPIRTPRGLDILAACG 363
++ + S DI A CG
Sbjct: 337 LGRMLREANMKST-------DIRAGCG 356
>gi|148977582|ref|ZP_01814161.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium
SWAT-3]
gi|145963233|gb|EDK28500.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium
SWAT-3]
Length = 246
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 34/265 (12%), Positives = 81/265 (30%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC + C +C+ T + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCMYCHNRDTWDLHDGKEVTVEEIINEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + + E + D+ G +
Sbjct: 67 MKASGGGITCSGGEAMLQPEFVRDFFLAAKAEG----------IHTCLDTNGYIRKHTEV 116
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+ ++ + L + +++ + + ++ K L+ Y
Sbjct: 117 V-----------DEVLDAADLVMLDLKHMRDEIHHDFIGVSNKRTLD-----FARYLHKI 160
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
YV++ G D+P DA L + +K + K+ L+P++ ++
Sbjct: 161 GKT-TWIRYVIVPGYTDTPEDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLDYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 220 EGVNPPSKETMDEIVAVLSQYHSNV 244
>gi|295680484|ref|YP_003609058.1| radical SAM protein [Burkholderia sp. CCGE1002]
gi|295440379|gb|ADG19547.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
Length = 376
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 43/254 (16%), Positives = 80/254 (31%), Gaps = 31/254 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 135 TCIRYESR-KKTCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVRHMVLTTGTPP 193
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D R + T G
Sbjct: 194 TPDRGARILCESAFAIKAAVDLPIQAQCEPPDDDVWFERMRASGIDTLGM---------- 243
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L VS ++R ++P P+ ++A R + ++ +L G+ D
Sbjct: 244 -------HLEVVSPEVRARVMPGKASVPISRYMEAFRAAVAVFGKGQV--STYILAGLGD 294
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
+ L++ + L I ++PF P G + + + G + +R
Sbjct: 295 TAEAILSISRELIDIGVYPFVVPFVPISGTPLEDHPAPTPEFMK---SILAPLG--AMLR 349
Query: 352 TP--RGLDILAACG 363
R DI A CG
Sbjct: 350 DAKMRSADIKAGCG 363
>gi|19703472|ref|NP_603034.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|296328997|ref|ZP_06871504.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|19713554|gb|AAL94333.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|296153890|gb|EFG94701.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 284
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 35/236 (14%), Positives = 74/236 (31%), Gaps = 30/236 (12%)
Query: 118 VSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C+L C FC T +L R E + +
Sbjct: 22 LVVSKSCNLNCIFCECGATKKIQLERQ-----------------RFKDMDEILNEIQSVL 64
Query: 175 VGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
K I G GEP + D N+ K++ G + ++ N
Sbjct: 65 KNIKPDYITFSGSGEPTLSLDLGNISKAIKEDLKYKGKI----CLITNSLLLANNQVIKE 120
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E ++ +L+ + D+ +V + + ++ + + + +I E +L+ I
Sbjct: 121 LEYIDLIVPTLNTLKQDIFEKIVRPDYRTSVDEIKKGFVNLNNSNYKGKIWIEIFILENI 180
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRS 344
NDS + + + L + + I N + I + ++ +
Sbjct: 181 NDSEENFIEIANFLNLENIRYDKIQLNTIDRVGAERDLKAISFDKIFKAKKILEEN 236
>gi|113969835|ref|YP_733628.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-4]
gi|113884519|gb|ABI38571.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-4]
Length = 246
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 79/248 (31%), Gaps = 44/248 (17%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T + + +E++ Q++ R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLDGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAIL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++ + K+ G+ L T+GFV V +E
Sbjct: 84 QAEFVA---------------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDE 119
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ + L + + + + + L A Y N + YV++ G D
Sbjct: 120 LLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFA--EYLAKRN-QPTWIRYVVVGGFTD 176
Query: 295 SPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
AL L + +K + K+ L+P++ ++ + +
Sbjct: 177 DEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGVAPPSRDTMEKIKAV 236
Query: 341 IKRSGYSS 348
G ++
Sbjct: 237 FSSQGINA 244
>gi|114047065|ref|YP_737615.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-7]
gi|113888507|gb|ABI42558.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-7]
Length = 246
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 79/248 (31%), Gaps = 44/248 (17%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T + + +E++ Q++ R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLDGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAIL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++ + K+ G+ L T+GFV V +E
Sbjct: 84 QAEFVA---------------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDE 119
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ + L + + + + + L A Y N + YV++ G D
Sbjct: 120 LLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFA--EYLAKRN-QPTWIRYVVVGGFTD 176
Query: 295 SPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
AL L + +K + K+ L+P++ ++ + +
Sbjct: 177 DEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGVAPPSRDTMEKIKAV 236
Query: 341 IKRSGYSS 348
G ++
Sbjct: 237 FSSQGINA 244
>gi|117920002|ref|YP_869194.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. ANA-3]
gi|117612334|gb|ABK47788.1| pyruvate formate-lyase activating enzyme [Shewanella sp. ANA-3]
Length = 246
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 79/248 (31%), Gaps = 44/248 (17%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T + + +E++ Q++ R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLDGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAIL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++ + K+ G+ L T+GFV V +E
Sbjct: 84 QAEFVA---------------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDE 119
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ + L + + + + + L A Y N + YV++ G D
Sbjct: 120 LLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFA--EYLAKRN-QPTWIRYVVVGGFTD 176
Query: 295 SPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
AL L + +K + K+ L+P++ ++ + +
Sbjct: 177 DEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGETYQLDGVAPPSRDTMEKIKAV 236
Query: 341 IKRSGYSS 348
G ++
Sbjct: 237 FSSQGINA 244
>gi|325264173|ref|ZP_08130905.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
gi|324030657|gb|EGB91940.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
Length = 317
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 20/149 (13%)
Query: 216 RITLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
+ T G+ P N + ++ + + + + LE L
Sbjct: 172 HTAIETCGYSPWNEFEKVLDYTDLVLYDVKHCDDTMHRRFTGKGNRLILENLKKVSDF-- 229
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326
R + ++ G ND+ ++ + I I AK I+L+PF+ ++
Sbjct: 230 ----NRPVIIRIPVIPGFNDTRKNMQEVAHIAAEIGAKEIHLLPFHQIGESKWDSTGKTY 285
Query: 327 -----LCSDQKDIVTFSECIKRSGYSSPI 350
++ + + + +G +
Sbjct: 286 HFRNIEEPSKESMAEIKQMLAETGVPVVV 314
>gi|227503993|ref|ZP_03934042.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
striatum ATCC 6940]
gi|227199387|gb|EEI79435.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
striatum ATCC 6940]
Length = 289
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 43/295 (14%), Positives = 86/295 (29%), Gaps = 55/295 (18%)
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I PE+++ + + D G T GC L C
Sbjct: 34 EIKRPELMEARRTGDIALVHSWELVTSVDGPG--------------TRMTMFMSGCPLRC 79
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
+C + + E + V + + P + G + S G + I
Sbjct: 80 QYC-HNPDTMEMKVGTLERIEDV--VKRIKRYKPIFKASGGGLTISGGEPLFQIAFTRRV 136
Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
V + T+ TSGF+ + R + + L + +
Sbjct: 137 -----LKEVHDAGI-------------HTTIDTSGFLGSRLRDEDLENIDLVLLDVKSGD 178
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ LV P D + + + +V++ G+ DSP + N+ +I+
Sbjct: 179 EETYKLVTRRELQPTIDFGDRL-----SAMGKPVWIRFVVVPGLTDSPENVRNVAEIVGR 233
Query: 309 IPAKINLI---PFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
+ I PF+ ++ +DI + + G++
Sbjct: 234 WSNNVERIEVLPFHNMGADKWHELGYPYTLEDTKPPKPEDIEAIRDVFRAKGFTV 288
>gi|167624514|ref|YP_001674808.1| pyruvate formate lyase-activating enzyme 1 [Shewanella halifaxensis
HAW-EB4]
gi|167354536|gb|ABZ77149.1| pyruvate formate-lyase activating enzyme [Shewanella halifaxensis
HAW-EB4]
Length = 246
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 35/250 (14%), Positives = 80/250 (32%), Gaps = 48/250 (19%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T + + ++++ Q++ R L G
Sbjct: 24 ITFMQGCLMRCLYCHNRDTWDLHGGKEMKVDDLMSQIISYRPFLEASGGG---------- 73
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
V GE + D V + G+ L T+GFV + +E
Sbjct: 74 --------VTASGGEAILQADFVAELFKACK-KEGI-----HTCLDTNGFVRKHTPIIDE 119
Query: 235 --IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
L + +D ++I++ + + ++ YV++ G
Sbjct: 120 LLDNTDLVLLDIKQIDDAKHIVLTNVSNHRTLQFAEYLH-----KRGQKTWIRYVVVGGY 174
Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
D A L + +K + K+ L+P++ ++ + +
Sbjct: 175 TDDIPSAQALAEFIKPMTNVEKVELLPYHELGKHKWEAMGVDYELNTISPPSTETMEQIK 234
Query: 339 ECIKRSGYSS 348
+ G ++
Sbjct: 235 KVFTDMGINA 244
>gi|186473378|ref|YP_001860720.1| radical SAM domain-containing protein [Burkholderia phymatum
STM815]
gi|184195710|gb|ACC73674.1| Radical SAM domain protein [Burkholderia phymatum STM815]
Length = 360
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 33/255 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 119 TCIRYESR-KKTCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPP 177
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D + + T G
Sbjct: 178 TPDRGAQILCESALAIKAAIDLPIQAQCEPPDDDAWFERMKASGIDTLGM---------- 227
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ ++R ++P P+ ++A R + ++ +L G+ D
Sbjct: 228 -------HLEVVTPEVRARVMPGKASVPISRYMEAFRAAVAVFGKGQV--STYILAGLGD 278
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE-CIKRSGYSSPI 350
+ L++ + L I ++PF P G F + ++ G + +
Sbjct: 279 TAEAILSMSRELVEIGVYPFVVPFVPISGTPLEDHPAPS----HAFMKSILEPLG--AML 332
Query: 351 R--TPRGLDILAACG 363
R R DI A CG
Sbjct: 333 RSAQMRSADIKAGCG 347
>gi|158320747|ref|YP_001513254.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140946|gb|ABW19258.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
Length = 455
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 85/246 (34%), Gaps = 21/246 (8%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
LL +S + +++ T L + + + LC+
Sbjct: 46 ELLKAKYSAEEIKEAVKELDLIKTEGLLFSDDRYFNHDGFKNKKPVVK-----ALCLHIA 100
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C++ C +C+ RSL+ + G + I+ ++ S GR+
Sbjct: 101 HDCNIRCKYCFASQGDFKG-------------VRSLMSEEVGKKAIDFLLENSGGRRNLE 147
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE--EIGVML 239
+ G GEPL NF+ VKK + R T++T+G + N + E +
Sbjct: 148 VDFFG-GEPLMNFETVKKIVDYGRSKEKEFNKNIRFTMTTNGVLLNDENMAYINENMHNV 206
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+S+ N+ IN + ++++ L R K D +D
Sbjct: 207 VLSIDGRREVNDNMRYAINGQGTYDIIVPKFLKMAELRGHRNYYVRGTFTKENLDFAKDV 266
Query: 300 LNLIKI 305
L+L +
Sbjct: 267 LHLADL 272
>gi|239827150|ref|YP_002949774.1| lysine 2,3-aminomutase YodO family protein [Geobacillus sp. WCH70]
gi|239807443|gb|ACS24508.1| lysine 2,3-aminomutase YodO family protein [Geobacillus sp. WCH70]
Length = 379
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 54/290 (18%)
Query: 45 RGIRDFQGMSDISQEVRHLLNQH-----FSII--YPEIVDEKISCDGTRKWLLR----FP 93
+ I + + ++ I +E R L + F + Y +++ D RK ++
Sbjct: 6 KYITNIEKITQIPKEEREKLKEITNKFVFRVNDYYLNLINWDDPNDPIRKLVIPNEGELN 65
Query: 94 ARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
+ Y+ K + T + C C FC+ ++L RN E +
Sbjct: 66 EYGSWDASDEAANYVVPGCQHKYKTTALLIVSEVCGAYCRFCF--RKRLFRNDVKEAMSD 123
Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
G+ + +I+N+++ G + +
Sbjct: 124 ----------------VTPGIEYIAQTPEINNVLLTGGDSLILATKKI------------ 155
Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML--- 266
+R + + +++ M + + R P R Y + +
Sbjct: 156 RYIVERLRAIDHVKIIRFGSKL-PVFNPMRIYEDQELLDLFRQYSTPEKRIYVMAHVNHP 214
Query: 267 ----IDACRHYPGLSNARRITFEYV-MLKGINDSPRDALNLIKILKGIPA 311
+A + + L +A I +LKGIND P L+ L
Sbjct: 215 REITEEARKAFQALHDAGVIVVNQTPILKGINDDPEVLAELLDKLSWAGV 264
>gi|220929033|ref|YP_002505942.1| radical SAM protein [Clostridium cellulolyticum H10]
gi|219999361|gb|ACL75962.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
Length = 269
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 85/239 (35%), Gaps = 30/239 (12%)
Query: 103 IETVYIPEKSRGTLC---VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
++ ++ + C + C+ C++C + + ++L ++
Sbjct: 2 VKILHPCFDETESGCRIHLPIAKKCNTKCNYC---KMAFSKCDIRPGVTDKLLDVSDVVT 58
Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
++ I + G G+PL N D++ +L I S++ K+ I
Sbjct: 59 YVNESIELYNDCKI--------IGIAGPGDPLANPDDIFSALEIVSENY--PDFKKCICT 108
Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVS----NDLRNILVPINRKYP-------LEMLID 268
+ G ++ E + +++++++ + + + + Y + L
Sbjct: 109 NGFGVEDCADKIKEAGIDYITLTINSINVNTLSKIYKYIYYRDEYYEGESAAQLILRLQK 168
Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY 326
+ +I V + GIND ++ LI+ L IN+IP G E+
Sbjct: 169 SALDILSSIKGLKIKINIVFIPGIND--KEIDELIQFLCKFKIDIINIIPLLSVSGTEF 225
>gi|164687526|ref|ZP_02211554.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM
16795]
gi|164603300|gb|EDQ96765.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM
16795]
Length = 449
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 42/249 (16%), Positives = 77/249 (30%), Gaps = 22/249 (8%)
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
E+ L F+ E ++I+ L +K LC+
Sbjct: 36 EIISKLENKFTAEQIEEAYDEITSLKEEGLLFTTDTYEFNPNFV-----NRKKVVKALCL 90
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
C+L C +C+ A+ ++ G I+ ++ S R+
Sbjct: 91 HVSHDCNLRCKYCFASQGDFGG-------------AKEIMNFEVGKAAIDYLIANSGNRR 137
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG 236
I G GEPL NF+ VK+ + R T++T+G + + E
Sbjct: 138 NLEIDFFG-GEPLMNFEVVKQLVEYGRKVEKTRGKNIRFTITTNGVLLDDEKIKYINENM 196
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DS 295
+ +SL N+ N K +++ + + + N D
Sbjct: 197 HNVVLSLDGRKEVNDNMRPTANNKGSYDIIAPKFKKLVSERPKDKYYYIRGTFTRDNLDF 256
Query: 296 PRDALNLIK 304
D L+
Sbjct: 257 SEDVLHFAN 265
>gi|153001208|ref|YP_001366889.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
OS185]
gi|160875881|ref|YP_001555197.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
OS195]
gi|217972870|ref|YP_002357621.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
OS223]
gi|151365826|gb|ABS08826.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS185]
gi|160861403|gb|ABX49937.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS195]
gi|217498005|gb|ACK46198.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS223]
gi|315268072|gb|ADT94925.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS678]
Length = 246
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 78/248 (31%), Gaps = 44/248 (17%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T + + +E++ Q++ R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLDGGKEVLVDELMSQIISYRPFLDASNGGVTASGGEAIL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++ + E + D+ G R+ T P I + +
Sbjct: 84 QAEFVAELFTACQQEG----------IHTCLDTNG---FVRKYT-------PVIDELLDH 123
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
++L H +D ++I + + + YV++ G D
Sbjct: 124 TNLVLLDIKH--MDDEKHIELTKVSNHRTLQFAQYLAERNQAT-----WIRYVVVGGFTD 176
Query: 295 SPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
AL L + +K + K+ L+P++ ++ ++ +
Sbjct: 177 DEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGISPPSRETMEKIKAV 236
Query: 341 IKRSGYSS 348
G ++
Sbjct: 237 FVGQGINA 244
>gi|218885310|ref|YP_002434631.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756264|gb|ACL07163.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 511
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 37/284 (13%), Positives = 83/284 (29%), Gaps = 41/284 (14%)
Query: 36 SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
Q+++ ++ R + Q R L + + + ++ +
Sbjct: 130 RQVFRGVHRRKVE---------QTARE-LMRRYPDNRLM---QHLTAKCALTYSCPAARN 176
Query: 96 CIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
G E + R C+S Q C T ++ TA EI+ +
Sbjct: 177 LCLGRYEAPLPVSRACNARCVGCISQQE---AGSRICATPQNRMAFTPTAAEIVEVMRH- 232
Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
V + + GEPL +++++ + G
Sbjct: 233 ---------------HARNEVAEPVFSFGQGCEGEPLTEAPLIEEAVRLFRAEGGRGTVN 277
Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
S + R+ L +SL++ + N Y L + ++
Sbjct: 278 LNSNAS---LPGAVERIAGAGLTSLRVSLNSAREEPYNRYYRP-HGYTLADVRESIA--T 331
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
N ++ + GI D+ + L+ +++ ++ I
Sbjct: 332 ARRNGVFVSLNLLYFPGITDTEPELEALLDMVRT--CGVSFIQL 373
>gi|90579339|ref|ZP_01235149.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio
angustum S14]
gi|90440172|gb|EAS65353.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio
angustum S14]
Length = 246
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 78/266 (29%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV----RNLTAEEILLQVLLARS 156
E+ + V Q GC + C +C R T +E++ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCKYC-HNRDTWDTHGGREATVDELMHEAKSYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + E + D+ G
Sbjct: 66 FMNSSGGGVTASGGEAMLQPEFVRDFFRAAQAEG----------IHTCLDTNGYIRKH-- 113
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
++ + ++ + L + +++ LV ++ K L+ Y
Sbjct: 114 ---------TDVVDEVLDATDLVMLDLKQMDDNIHQNLVGVSNKRVLD-----FARYL-H 158
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY-------- 326
++ YV++ G D A L + +K + KI L+P++ ++
Sbjct: 159 QRGQKTWIRYVVVPGYTDDEHSAHQLGEFIKDMDNIEKIELLPYHQLGEHKWEAMGFEYP 218
Query: 327 ----LCSDQKDIVTFSECIKRSGYSS 348
++ + E + G+
Sbjct: 219 LAGVKPPKKETMEAIKEILSSYGHKV 244
>gi|126174881|ref|YP_001051030.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
OS155]
gi|304411937|ref|ZP_07393548.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183]
gi|307303295|ref|ZP_07583050.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175]
gi|125998086|gb|ABN62161.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS155]
gi|304349797|gb|EFM14204.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183]
gi|306913655|gb|EFN44077.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175]
Length = 246
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 78/248 (31%), Gaps = 44/248 (17%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T + + +E++ Q++ R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLDGGKEVLVDELMSQIISYRPFLDASNGGVTASGGEAIL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++ + E + D+ G R+ T P I + +
Sbjct: 84 QAEFVAELFTACQQEG----------IHTCLDTNG---FVRKYT-------PVIDELLDH 123
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
++L H +D ++I + + + YV++ G D
Sbjct: 124 TDLVLLDIKH--MDDEKHIELTKVSNHRTLQFAQYLAERNQAT-----WIRYVVVGGFTD 176
Query: 295 SPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
AL L + +K + K+ L+P++ ++ ++ +
Sbjct: 177 DEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGISPPSRETMEKIKAV 236
Query: 341 IKRSGYSS 348
G ++
Sbjct: 237 FVGQGINA 244
>gi|315925707|ref|ZP_07921916.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621025|gb|EFV00997.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 251
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY-------------L 327
+ G+N S + K + K ++L+P++ +Y
Sbjct: 167 TIIRVPTIPGVNASAETIREIADFAKDLGVKEVHLLPYHKLGENKYHLMGLEYKMPEDTK 226
Query: 328 CSDQKDIVTFSECIKRSGYSSPI 350
+++++ F + ++ +G + I
Sbjct: 227 TPNREEMAAFKKVVESAGLACKI 249
>gi|332702062|ref|ZP_08422150.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
africanus str. Walvis Bay]
gi|332552211|gb|EGJ49255.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
africanus str. Walvis Bay]
Length = 445
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 27/234 (11%), Positives = 77/234 (32%), Gaps = 30/234 (12%)
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C++ C +C + + + + P + +I+ +
Sbjct: 32 CNIQCRYCN----------RKYDCVNESRPGVTSGVLTPPQAAAYLDRVLEKEPRITVVG 81
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
+ G G+P N + +++ + + ++ + G P + RV + + +++
Sbjct: 82 IAGPGDPFANAEATLETIRLIRERHPEMLF--CVSTNGLGLPPYLDRVKDAGITHMTVTV 139
Query: 244 HAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
+AV + + L +++ R + ++ G
Sbjct: 140 NAVDPAVGKRFYSWVRDGERTLHGREAAELLLMRQLESIRGLKER--GITVKVNTILTPG 197
Query: 292 INDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
ND L K + + +N++P +P + + + F E ++++
Sbjct: 198 YNDG--HIEELAKAMASMGVDMLNVMPLHPTADTPFEGIIEPN-KAFVEKLRKA 248
>gi|254508526|ref|ZP_05120644.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
16]
gi|219548551|gb|EED25558.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
16]
Length = 220
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 30/246 (12%), Positives = 76/246 (30%), Gaps = 46/246 (18%)
Query: 121 QVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
GC + C +C + +T +EI+ + R + G G
Sbjct: 1 MQGCLMRCMYC-HNRDTWDTHGGKEVTVDEIINEAKSYRHFMNASGGGVTCSGGEAMLQP 59
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
+ + E + D+ G ++ E
Sbjct: 60 EFVRDFFRAAQSEG----------IHTCLDTNGYIRKH-----------TDVIDEVLEAT 98
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
++ + L + +++ + + ++ K +D R+ L ++ YV++ G D
Sbjct: 99 DLVMLDLKHMKDEIHHDFIGVSNK----RTLDFARYLHKL--GQKTWIRYVVVPGYTDDE 152
Query: 297 RDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
A L + +K + KI L+P++ ++ ++ + ++
Sbjct: 153 EAAHMLGEFIKDMDNIEKIELLPYHKLGAHKWEALGHDYPLEGINPPSKETMDKIVSILE 212
Query: 343 RSGYSS 348
+ +
Sbjct: 213 QYHSNV 218
>gi|78187319|ref|YP_375362.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
gi|78167221|gb|ABB24319.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
Length = 312
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 40/235 (17%)
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
C+ C +C R P +E G +I
Sbjct: 24 PKSCTWNCIYC---QLGRTR----------AYTLERKEFYPPEDILLEIQEALHSGARID 70
Query: 181 NIVMMGMGEPLCNF------DNVKKSLSIASDSMGLSFSKRRITLSTSG----FVPNIAR 230
I +G GE + D VKK I + + T+G +
Sbjct: 71 WITFVGSGETMLYQGIGRLIDEVKKMTDIP------------VAVITNGSLFSLPEVRSE 118
Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
+ V+ SL+A S +L + + + ++ R + + R+ E ++L
Sbjct: 119 LLHADAVLP--SLNAGSEELHQRISRPAPGFTFSLHLEGLRQF-RREYSGRLWVEVMLLG 175
Query: 291 GINDSPRDALNLIKILKGI-PAKINL-IPFNPWPGCEYLCSDQKDIVTFSECIKR 343
G+NDS ++ L+ I P ++L IP P + L D++ I + +
Sbjct: 176 GVNDSDEALQDIASALRSINPDMVHLVIPTRPSTEKDVLLPDEERIERAAAILAE 230
>gi|149909997|ref|ZP_01898646.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp.
PE36]
gi|149807011|gb|EDM66970.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp.
PE36]
Length = 258
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 47/248 (18%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLV----RNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
V Q GC + C +C ++ T +E++ +++ ++ + G G
Sbjct: 35 YIVFMQ-GCLMRCLYC-HNRDSWDLHSGKDTTVDELIRELISYKAFMLATGGGVTASGGE 92
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
+ + E + + + +D +
Sbjct: 93 AMLQPEFVRDFFTAAQAEGVNTCLDTNGYIRKYTD---------------------VIDE 131
Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
++ ++ + L V++D+ L ++ K LE Y N ++ YV++ G
Sbjct: 132 VLDVTDLVMLDLKQVNDDIHQELAGVSNKRTLE-----FAEYLEKRN-QKTWIRYVVVPG 185
Query: 292 INDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTF 337
D A L K ++ + K+ L+P++ ++ + +
Sbjct: 186 YTDDDASAHQLGKFIQHMSNIEKVELLPYHELGLHKWKTMGYDYPLDGVPPPSKDTMDRI 245
Query: 338 SECIKRSG 345
+
Sbjct: 246 QNILLEYK 253
>gi|317129675|ref|YP_004095957.1| lysine 2,3-aminomutase YodO family protein [Bacillus
cellulosilyticus DSM 2522]
gi|315474623|gb|ADU31226.1| lysine 2,3-aminomutase YodO family protein [Bacillus
cellulosilyticus DSM 2522]
Length = 388
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 44/283 (15%), Positives = 87/283 (30%), Gaps = 40/283 (14%)
Query: 45 RGIRDFQGMSDISQEVRHLLN---QHFSII----YPEIVDEKISCDGTRKWLLRFP---- 93
+ I + ++ I +E R L + F Y ++D D +K ++
Sbjct: 5 KYIMNIDKITQIPEEERAKLKKITEKFVFRVNDYYLNLIDWNNPNDPIKKLIIPNEGELE 64
Query: 94 ----ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
K T + C C +C+ ++L RN E +
Sbjct: 65 EYGRWDASDEDTNYAAPGCQHKYGTTALLIVSEVCGAYCRYCF--RKRLFRNDIKEAMAD 122
Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
G+ +I+N+++ G + ++ + +
Sbjct: 123 ----------------VQPGIEYIKNNPQINNVLLTGGDSLILATKKLRLIIEQLRE--- 163
Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
+I S E +L + + + R ++ +P+E+ +A
Sbjct: 164 --IPHVKIIRLGSKMPVFNPMRIYEDQELLDLIKEYSTPEQRIYVMAH-INHPVEITEEA 220
Query: 270 CRHYPGLSNARRITFEYV-MLKGINDSPRDALNLIKILKGIPA 311
+ + L NA I +LKGIND P L+ L
Sbjct: 221 KKGFDALHNAGAIVVNQTPVLKGINDDPEVLAELLDKLSWAGV 263
>gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
9_1_42FAA]
gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
9_1_42FAA]
Length = 300
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 17/89 (19%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPW-------------- 321
+++G+N ++ + L +P INL+P++
Sbjct: 210 GFPYYIRIPLIEGVNADEKNIKQSAEFLASLPRHPEIINLLPYHDIGKGKHTKLGSIYNP 269
Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
G + ++ + + G I
Sbjct: 270 KGYKMQTPSEEVQQQCIQILTDYGLKVTI 298
>gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4]
gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
3_1_33FAA]
gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei
5_1_36/D4]
gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
3_1_33FAA]
Length = 302
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 17/89 (19%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPW-------------- 321
+++G+N ++ + L +P INL+P++
Sbjct: 212 GFPYYIRIPLIEGVNADEKNIKQSAEFLASLPRHPEIINLLPYHDIGKGKHTKLGSIYNP 271
Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
G + ++ + + G I
Sbjct: 272 KGYKMQTPSEEVQQQCIQILTDYGLKVTI 300
>gi|302851670|ref|XP_002957358.1| hypothetical protein VOLCADRAFT_119662 [Volvox carteri f.
nagariensis]
gi|300257317|gb|EFJ41567.1| hypothetical protein VOLCADRAFT_119662 [Volvox carteri f.
nagariensis]
Length = 79
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY 43
L + ELE G R Q+W+W+Y
Sbjct: 16 LKSLTLPELEAWCASEGEEAPAN--RALQLWRWMY 48
>gi|313888447|ref|ZP_07822114.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845476|gb|EFR32870.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 450
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 19/213 (8%)
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+ P+ LC+ C+L C +C+ + RSL
Sbjct: 78 EDEHFKLPRFNPQNVVKALCLHVAHDCNLRCKYCFASQGDFKGD-------------RSL 124
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G + ++ ++ S R+ + G GEPL NFD VKK ++ + R
Sbjct: 125 MTFETGKKALDFLLQNSGNRRNLEVDFFG-GEPLMNFDLVKKLVAYGREEEKKYDKHFRF 183
Query: 218 TLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
T++T+G + I E + +S+ + N K ++++ +
Sbjct: 184 TITTNGVLLNDEIEEFINENMDNVVLSIDGRKEINDEMRPTTNGKGSYDIIVPKFKELID 243
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ N++ + +L
Sbjct: 244 KRGDKDYFIRGTF---TNENLDFSEDLKDFYSH 273
>gi|325265158|ref|ZP_08131884.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
gi|324029562|gb|EGB90851.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
Length = 302
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 22/147 (14%)
Query: 216 RITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
+T+ T G P + + L + + L L R
Sbjct: 155 SVTIDTCGQAPYENYERILPYTDTFLYDIKTLDTKLHKKYMGAGNELILGNLERLSRD-- 212
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPW---------- 321
RI +K +N + +I+ L+ +NL+P++
Sbjct: 213 ----GARIYIRIPTIKEVNGNEDAMKAMIRYLQEKNIHAAGVNLLPYHNTGSGKYTKIGK 268
Query: 322 --PGCEYLCSDQKDIVTFSECIKRSGY 346
G D++++ F E + +G+
Sbjct: 269 CYEGTGLHAPDKEEMNHFVEMFREAGF 295
>gi|323496041|ref|ZP_08101104.1| pyruvate formate lyase-activating enzyme 1 [Vibrio sinaloensis DSM
21326]
gi|323318932|gb|EGA71880.1| pyruvate formate lyase-activating enzyme 1 [Vibrio sinaloensis DSM
21326]
Length = 246
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 33/266 (12%), Positives = 79/266 (29%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + V Q GC + C +C + +T EEI+ R
Sbjct: 8 HSFESCGTVDGPGIRFIVFMQ-GCLMRCQYC-HNRDTWDTHGGKEVTVEEIINDAKSYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + E + D+ G
Sbjct: 66 FMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNGYIRKH-- 113
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
++ E ++ + L + +++ + + ++ K +D R+ L
Sbjct: 114 ---------TDVIDEVLEATDLVMLDLKHMKDEIHHDFIGVSNK----RTLDFARYLQKL 160
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------- 327
++ YV++ G D A L +K + K+ L+P++ ++
Sbjct: 161 --GQKTWIRYVVVPGYTDDEEAAHMLGDFIKDMDNIEKVELLPYHKLGAHKWEALGHDYP 218
Query: 328 -----CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 219 LEGVNPPSKETMDKIVSILEQYHSNV 244
>gi|310829213|ref|YP_003961570.1| radical SAM domain-containing protein [Eubacterium limosum KIST612]
gi|308740947|gb|ADO38607.1| radical SAM domain-containing protein [Eubacterium limosum KIST612]
Length = 449
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 78/246 (31%), Gaps = 24/246 (9%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + + V ++ +K + VY LC+
Sbjct: 45 EKLKRKYPEEELLEVILELEMLEEQKMIFTKNDYDPD-------VYKNHDLVKALCLHVA 97
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C+L C++C+ LL + +I + +
Sbjct: 98 HDCNLKCNYCFASQGDFNG--------------EKLLMPLEVGKKAIDFIIEQSKDRQNL 143
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE--EIGVML 239
V GEPL NFD VK+ + A K + T++T+G + + + E +
Sbjct: 144 EVDFFGGEPLMNFDVVKELVDYARSKEESYHKKFKFTITTNGVLLDDENMAYIDENMDNV 203
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRD 298
+SL N+ +N K +++ID + + ++ + N D D
Sbjct: 204 VLSLDGRKCVNDNMRRTVNDKGSFDIIIDKIKKMAAMREGKKDYYVRGTYTKHNLDFGED 263
Query: 299 ALNLIK 304
L +
Sbjct: 264 VNFLAE 269
>gi|28897766|ref|NP_797371.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus
RIMD 2210633]
gi|153837337|ref|ZP_01990004.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AQ3810]
gi|260363808|ref|ZP_05776563.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
K5030]
gi|260876932|ref|ZP_05889287.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AN-5034]
gi|260897926|ref|ZP_05906422.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
Peru-466]
gi|260903461|ref|ZP_05911856.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AQ4037]
gi|28805979|dbj|BAC59255.1| pyruvate formate-lyase 1 activating enzyme [Vibrio parahaemolyticus
RIMD 2210633]
gi|149749368|gb|EDM60141.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AQ3810]
gi|308085486|gb|EFO35181.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
Peru-466]
gi|308093910|gb|EFO43605.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AN-5034]
gi|308110360|gb|EFO47900.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AQ4037]
gi|308113908|gb|EFO51448.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
K5030]
gi|328473257|gb|EGF44105.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus
10329]
Length = 246
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 79/265 (29%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC + C +C+ T + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCKYCHNRDTWDTHDGKEVTVEEIIAEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G +
Sbjct: 67 MNASGGGITCSGGEAMLQPEFVRDFFRAAHAEG----------IHTCLDTNGYIRKHTEV 116
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+ ++ + + + +++ + ++ + L+ Y
Sbjct: 117 -----------IDEVLDATDLVMLDIKHMKDEIHQDFIGVSNRRTLD-----FARYL-HK 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D P A L + +K + K+ L+P++ ++
Sbjct: 160 IGQKTWIRYVVVPGYTDDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 220 EGVNPPSKETMDEIQSILSQYHSNV 244
>gi|229582204|ref|YP_002840603.1| tRNA-modifying enzyme [Sulfolobus islandicus Y.N.15.51]
gi|228012920|gb|ACP48681.1| Wyosine base formation domain protein [Sulfolobus islandicus
Y.N.15.51]
Length = 361
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 29/256 (11%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFC------YTGTQKLVRNLTAEE----ILLQVLLARS 156
Y E R + C C C G + + A + I+ + +
Sbjct: 56 YGIESHRCVQMTPTAAWCWFRCVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHK 115
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ + + +++ + GEP ++ + + KR
Sbjct: 116 KAVSGYLGRNDVNIQKVKDAMRPAHVAISLTGEPTL-YEKLGDLIKEYH--------KRG 166
Query: 217 IT--LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
+T L TSG P+I EE L +SL A + ++ ++++ P
Sbjct: 167 MTTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILP 226
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEYL-----C 328
S+ + M+KG N S +DA K+++ +P I + + Y
Sbjct: 227 SFSS--PTVIRFTMIKGYNMSEQDAREFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAM 284
Query: 329 SDQKDIVTFSECIKRS 344
K+I F++ + +
Sbjct: 285 PKHKEIREFAKTLAQY 300
>gi|307718060|ref|YP_003873592.1| FeMo cofactor biosynthesis protein NifB [Spirochaeta thermophila
DSM 6192]
gi|306531785|gb|ADN01319.1| FeMo cofactor biosynthesis protein NifB [Spirochaeta thermophila
DSM 6192]
Length = 423
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 38/238 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C +C N + + S L D P ++ ++ +
Sbjct: 37 RCNIQCHYC---------NRKFDCVNESRPGVTSGLLD-PDEACEVVDLLKERFPDLTVV 86
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240
+ G G+P N D +L + ++T+G + + + +
Sbjct: 87 GIAGPGDPFANPDETLSTLRGVRSRH----PDLLLCVATNGLALPEYVEELADLRVSHVT 142
Query: 241 ISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPG---------LSNARRITFEYVMLK 290
++++AV ++ + P R + +A R + + +++
Sbjct: 143 VTVNAVHPEVGERIYPWVRYERRVRGGREAARLLIDRQQEAIVSLKAKGLVVKVNTIVIP 202
Query: 291 GINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKR 343
G+ND+ A I IN IP P G + D F ++R
Sbjct: 203 GVNDTHVREVAKETAAWGADI---INPIPLYPVEGTRFAHIGEPDP----RFMSELRR 253
>gi|227827543|ref|YP_002829323.1| tRNA-modifying enzyme [Sulfolobus islandicus M.14.25]
gi|227830230|ref|YP_002832010.1| tRNA-modifying enzyme [Sulfolobus islandicus L.S.2.15]
gi|229579045|ref|YP_002837443.1| tRNA-modifying enzyme [Sulfolobus islandicus Y.G.57.14]
gi|229584746|ref|YP_002843248.1| tRNA-modifying enzyme [Sulfolobus islandicus M.16.27]
gi|238619700|ref|YP_002914526.1| tRNA-modifying enzyme [Sulfolobus islandicus M.16.4]
gi|284997653|ref|YP_003419420.1| Wyosine base formation [Sulfolobus islandicus L.D.8.5]
gi|227456678|gb|ACP35365.1| Wyosine base formation domain protein [Sulfolobus islandicus
L.S.2.15]
gi|227459339|gb|ACP38025.1| Wyosine base formation domain protein [Sulfolobus islandicus
M.14.25]
gi|228009759|gb|ACP45521.1| Wyosine base formation domain protein [Sulfolobus islandicus
Y.G.57.14]
gi|228019796|gb|ACP55203.1| Wyosine base formation domain protein [Sulfolobus islandicus
M.16.27]
gi|238380770|gb|ACR41858.1| Wyosine base formation domain protein [Sulfolobus islandicus
M.16.4]
gi|284445548|gb|ADB87050.1| Wyosine base formation [Sulfolobus islandicus L.D.8.5]
gi|323474594|gb|ADX85200.1| Wyosine base formation domain protein [Sulfolobus islandicus
REY15A]
gi|323477326|gb|ADX82564.1| Wyosine base formation domain protein [Sulfolobus islandicus
HVE10/4]
Length = 361
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 29/256 (11%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFC------YTGTQKLVRNLTAEE----ILLQVLLARS 156
Y E R + C C C G + + A + I+ + +
Sbjct: 56 YGIESHRCVQMTPTAAWCWFRCVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHK 115
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ + + +++ + GEP ++ + + KR
Sbjct: 116 KAVSGYLGRNDVNIQKVKDAMRPAHVAISLTGEPTL-YEKLGDLIKEYH--------KRG 166
Query: 217 IT--LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
+T L TSG P+I EE L +SL A + ++ ++++ P
Sbjct: 167 MTTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILP 226
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEYL-----C 328
S+ + M+KG N S +DA K+++ +P I + + Y
Sbjct: 227 SFSS--PTVIRFTMIKGYNMSEQDAREFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAM 284
Query: 329 SDQKDIVTFSECIKRS 344
K+I F++ + +
Sbjct: 285 PKHKEIREFAKTLAQY 300
>gi|218533265|ref|YP_002424080.1| radical SAM protein [Methylobacterium chloromethanicum CM4]
gi|218525568|gb|ACK86152.1| Radical SAM domain protein [Methylobacterium chloromethanicum CM4]
Length = 367
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 79/252 (31%), Gaps = 27/252 (10%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ Q + TC FC G A + Q+ +AR+ + + P+
Sbjct: 121 TCIRYQSR-AKTCQFCSIGQSLAAGRTVAHKSPEQLAEVARAAVLLDGVKHMVMTTGTPN 179
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ D + + G
Sbjct: 180 ATDRGAAVLCKSAFAVKAAVDLPIQAQCEPPDDDRWFERMKLSGVDALGM---------- 229
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ ++R ++P PLE A + R +L G+ D
Sbjct: 230 -------HLEAVTPEVRARIMPGKASVPLERYYAAFEA--AVPVFGRGQVSTYILAGLGD 280
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
+P L + + L G+ ++PF P G + + + + +R
Sbjct: 281 TPEAILAMAERLIGMGVYPFVVPFVPISGTALESHPAPGPDFMHAILKPLAGMLAGANLR 340
Query: 352 TPRGLDILAACG 363
+ DI A CG
Sbjct: 341 ST---DIKAGCG 349
>gi|119774634|ref|YP_927374.1| pyruvate formate lyase-activating enzyme 1 [Shewanella amazonensis
SB2B]
gi|119767134|gb|ABL99704.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella
amazonensis SB2B]
Length = 246
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 32/249 (12%), Positives = 76/249 (30%), Gaps = 44/249 (17%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T + + +E++ Q+L R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLDGGKEMQVDELMSQILSYRPFLDASGGGVTASGGEAIL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++++ E + D+ G R+ T P I + +
Sbjct: 84 QAEFVADLFKACRAEG----------IHTCLDTNG---FVRKYT-------PAIDVLLDN 123
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
++L H +D ++ + + + ++ YV++ G +
Sbjct: 124 TDLVLLDIKH--IDDAKHQDLTKVSNHRTLQFAEYL-----AKRDQKTWIRYVVVAGFTE 176
Query: 295 SPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
A L + + K+ L+P++ ++ +
Sbjct: 177 DVESAEKLADFIAPMGNVEKVELLPYHELGKHKWEAMGEDYPLKGVHPPTADTMEAIKAV 236
Query: 341 IKRSGYSSP 349
R G ++
Sbjct: 237 FTRRGLTAT 245
>gi|284175641|ref|ZP_06389610.1| tRNA-modifying enzyme [Sulfolobus solfataricus 98/2]
gi|261602540|gb|ACX92143.1| Wyosine base formation domain protein [Sulfolobus solfataricus
98/2]
Length = 361
Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 44/253 (17%), Positives = 85/253 (33%), Gaps = 29/253 (11%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFC------YTGTQKLVRNLTAEE----ILLQVLLARS 156
Y E R + C C C G + + A + I+ + +
Sbjct: 56 YGIESHRCVQMTPTAAWCWFRCVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHR 115
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ + K +++ + GEP ++ + + KR
Sbjct: 116 KAVSGYLGRNDVSIQKVKDAMKPAHVAISLTGEPTL-YEKLGDLIKEYH--------KRG 166
Query: 217 IT--LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
+T L TSG P+I EE L +SL A + ++ ++++ P
Sbjct: 167 MTTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILP 226
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEYL-----C 328
S+ + M+KG N S +DA K+++ +P I + + Y
Sbjct: 227 SFSS--PTVIRFTMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAM 284
Query: 329 SDQKDIVTFSECI 341
K+I F++ +
Sbjct: 285 PKHKEIREFAKIL 297
>gi|323483059|ref|ZP_08088452.1| glycyl-radical enzyme activating protein family [Clostridium
symbiosum WAL-14163]
gi|323691495|ref|ZP_08105766.1| glycyl-radical enzyme activating protein family [Clostridium
symbiosum WAL-14673]
gi|323403599|gb|EGA95904.1| glycyl-radical enzyme activating protein family [Clostridium
symbiosum WAL-14163]
gi|323504468|gb|EGB20259.1| glycyl-radical enzyme activating protein family [Clostridium
symbiosum WAL-14673]
Length = 297
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 41/289 (14%), Positives = 86/289 (29%), Gaps = 48/289 (16%)
Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT---- 135
S + L G E++ V S C+ C C T
Sbjct: 39 ESQHRPTQILWDKKKCFYGHLCEVKCPAGCLNFENNNLVFSADNCT-GCKSCITQCPGKA 97
Query: 136 QKLVRNLTA-EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
V N+ +E++ +VL + G + G +
Sbjct: 98 LTFVGNMMELDEVMEEVLKDMDFYQESKGGVTLSGGEVLVQPD----------------- 140
Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254
+L G+ + ST P + +L + + ++
Sbjct: 141 --FAAALLKKCKENGIHTALETTAFST----PLVFSKVLANTDLLLLDIKHYNDREHIKY 194
Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KI 313
++ + LE L A + + ++ +N++ +DA +K+LK +
Sbjct: 195 TGVSNQSILENLDFAV------TMKVPVVARIPVIPSVNNTIQDAKEFVKLLKEHRVDTV 248
Query: 314 NLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSSPI 350
NL+PF+ + +Y +D+ + K +G + +
Sbjct: 249 NLLPFHQFGEKKYEELQVPYQLKDVKALRPEDMTEYYNVFKNAGLNVSM 297
>gi|15897835|ref|NP_342440.1| tRNA-modifying enzyme [Sulfolobus solfataricus P2]
gi|13814136|gb|AAK41230.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
Length = 365
Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 44/253 (17%), Positives = 85/253 (33%), Gaps = 29/253 (11%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFC------YTGTQKLVRNLTAEE----ILLQVLLARS 156
Y E R + C C C G + + A + I+ + +
Sbjct: 60 YGIESHRCVQMTPTAAWCWFRCVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHR 119
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ + K +++ + GEP ++ + + KR
Sbjct: 120 KAVSGYLGRNDVSIQKVKDAMKPAHVAISLTGEPTL-YEKLGDLIKEYH--------KRG 170
Query: 217 IT--LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
+T L TSG P+I EE L +SL A + ++ ++++ P
Sbjct: 171 MTTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILP 230
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEYL-----C 328
S+ + M+KG N S +DA K+++ +P I + + Y
Sbjct: 231 SFSS--PTVIRFTMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAM 288
Query: 329 SDQKDIVTFSECI 341
K+I F++ +
Sbjct: 289 PKHKEIREFAKIL 301
>gi|197335857|ref|YP_002156408.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11]
gi|197317347|gb|ACH66794.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11]
Length = 245
Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 31/268 (11%), Positives = 75/268 (27%), Gaps = 51/268 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
ET + V Q GC + C +C+ T + +T E++ + R
Sbjct: 7 HSFETCGTVDGPGIRFIVFLQ-GCLMRCMYCHNRDTWDTHDGKEVTVAELIEEAKSYRHF 65
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G
Sbjct: 66 MKASGGGITCSGGEAMLQPEFVRDFFRAAQAEG----------IHTCLDTNGYIRKH--- 112
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
++ E ++ + L + +D+ + ++ +
Sbjct: 113 --------TDVIDEVLEASDLVMLDLKQMKDDIHKEFIGVSNT-RVLDFARYLHKI---- 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEYL----- 327
++ YV++ G D A L +K + +N L+P++ ++
Sbjct: 160 -GQKTWIRYVIVPGYTDDEESAHLLGDFIKDM---VNIEKIELLPYHKLGAHKWEALGHD 215
Query: 328 -------CSDQKDIVTFSECIKRSGYSS 348
++ + E + + +
Sbjct: 216 YPLEGVNPPSKETMEKMVEILSQYHNNV 243
>gi|325263731|ref|ZP_08130464.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
gi|324030769|gb|EGB92051.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
Length = 308
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 45/302 (14%)
Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT---- 135
S + L + K + C+ C+ C
Sbjct: 20 RSNIFFKGCPLTCLWCANPEGQKAVPQLFYTKMKCVGCML----CAKVCPHDAVTAYETK 75
Query: 136 -----QKLVR-------NLTAEEILLQVLL-ARSLLGDFPGCEDIEGMVIPSVGRKI-SN 181
VR N + + L A + G + +DI V
Sbjct: 76 EEAEAFGFVRHDREKCDNCETHDCVEMCLQNALDITGKWMTVDDIMEKVHRDASYYAGKG 135
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+ + G+PL D V + L G++ L + VP + + L +
Sbjct: 136 GITLSGGDPLVYADFVTELLRRCKS-EGIN-----TVLESELCVPARSLEKVMPYIDLYL 189
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
+ + +D ++I + + + G + + ++ G DS +
Sbjct: 190 TDIKIIDDQKHIEMTGVTNKQILENL----RLIGRTCPEKACLRCPIIPGCTDSDENIHA 245
Query: 302 LIKILKGIP-AKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYSS 348
+ K K A++N++P++ ++ + + ++ ++
Sbjct: 246 IGKFCKENGFARVNILPYHKLGTTKHERLGSVYPLPDVQAPSDEQMQHVADILESYKIDC 305
Query: 349 PI 350
I
Sbjct: 306 II 307
>gi|295094228|emb|CBK83319.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Coprococcus sp.
ART55/1]
Length = 454
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 20/220 (9%)
Query: 92 FPARCIGGPVEIETVYIPEKSRGTL----CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
+ + I K R T+ C+ C+L C +C+ G + +
Sbjct: 66 VEDGTLFTDDVYKDYIIDFKKRKTVVKALCLHIAHDCNLACRYCFAGEGEYKGD------ 119
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
R+L+ + ++ +V S R+ + G GEPL N+D VKK++
Sbjct: 120 -------RALMSLEVAKKSLDFLVANSGLRRNLEVDFFG-GEPLMNWDVVKKTVEYGRSL 171
Query: 208 MGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
K R TL+T+G + I + +S+ + N K ++
Sbjct: 172 EEKYDKKFRFTLTTNGVLLNDEIMEFANREMANVVLSIDGRKEVHDYMRPTRNGKGSYDV 231
Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ + + + D +D L++ +
Sbjct: 232 ILSKFQEFAKKRAGKSYYVRGTYTHNNLDFSQDVLHMADL 271
>gi|160945445|ref|ZP_02092671.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii
M21/2]
gi|158443176|gb|EDP20181.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii
M21/2]
Length = 487
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 85/241 (35%), Gaps = 21/241 (8%)
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL----CVSSQVGCSL 126
P++ +E + L+ + P + + K+R T+ C+ C+L
Sbjct: 57 SRPDVTEEDLRQCIDDVTSLK-ENGKLWSPDVYKDMAFDFKNRNTVVKALCLHVAHSCNL 115
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
+CS+C+ + + R+L+ G ++ ++ S R+ + G
Sbjct: 116 SCSYCFASQGRYHGD-------------RALMSFEVGKRAMDFLIENSGTRRNLEVDFFG 162
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLH 244
GEPL NFD VKK ++ + + R T++T+G + ++ + + +SL
Sbjct: 163 -GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNGVLIDDDVIDFCNKECHNVVLSLD 221
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
V + ++ + + + D D ++
Sbjct: 222 GRKEVNDRFRVDCAGNGSYDRIVPKFQEFVKKRGDKNYYMRGTYTHFNTDFTNDIFHMAD 281
Query: 305 I 305
+
Sbjct: 282 L 282
>gi|315630423|ref|YP_004090310.1| Radical SAM domain protein [Ruminococcus albus 7]
gi|315450863|gb|ADU24424.1| Radical SAM domain protein [Ruminococcus albus 7]
Length = 470
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 73/224 (32%), Gaps = 14/224 (6%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+ C+ C +C ++ + + + + D+
Sbjct: 72 LEVTNRCNFRCEYCIFS----EHYQGHSKLENENMTLETAIRAIDMYMDLIEKGKIYNPE 127
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+ I G GEPL NFD VKK + A + IT + ++ E
Sbjct: 128 RTPIIGFYG-GEPLLNFDLVKKCVEYAKERY-KGRVLFSITSNAYLLNDEASKFMAENDF 185
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
M SL + K E + R+Y ++N+ M+ + D
Sbjct: 186 MPIFSLDGPQKIHDSNRKLAGGKGTFERVYQNIRNYARVTNSIP------MINSVYDYNT 239
Query: 298 DALNLIKILKGIPAKI--NLIPFNPWPGCEYLCSDQKDIVTFSE 339
D L++ + +L P NP+ Y D+K + TF E
Sbjct: 240 DMEELMEFWSEQNEMVLLSLSPVNPYDTDYYNSFDEKTVKTFFE 283
>gi|294140395|ref|YP_003556373.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea
DSS12]
gi|293326864|dbj|BAJ01595.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea
DSS12]
Length = 246
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 73/242 (30%), Gaps = 38/242 (15%)
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
GC + C +C +L + L ++ P E G V S G I
Sbjct: 27 MQGCLMRCQYC-HNRDTW--DLHGGSEVEVKELMEQIISYRPFLEASGGGVTASGGEAIL 83
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
+ E K+ + D+ G R+ T P I + + ++L
Sbjct: 84 QAEF--VSELFAECK--KEGIHTCLDTNG---FVRKYT-------PIIDELIDNTDLVLL 129
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
H +D R+I + + ++ YV++ G D A
Sbjct: 130 DIKH--IDDQRHIDLTQVSNHRTLDFAQYLN-----KKQQKTWIRYVVVGGFTDDIGAAQ 182
Query: 301 NLIKILKGI--PAKINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSGY 346
L LK + K+ L+P++ ++ + + + +G
Sbjct: 183 RLADFLKPMTNIEKVELLPYHELGKHKWEAMGETYQLDNISPPSSETMEQIKKVFVDAGI 242
Query: 347 SS 348
+
Sbjct: 243 KA 244
>gi|323492522|ref|ZP_08097670.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG
20546]
gi|323313309|gb|EGA66425.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG
20546]
Length = 246
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 33/265 (12%), Positives = 79/265 (29%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC + C +C+ T + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCMYCHNRDTWDTHDGKEVTVEEIINEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G +
Sbjct: 67 MNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNGYIRKHTEV 116
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+ ++ + L + +++ + + ++ K L+ Y
Sbjct: 117 -----------IDEVLDATDLVMLDLKHMKDEIHHDFIGVSNKRTLD-----FARYL-HK 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D A L +K + KI L+P++ ++
Sbjct: 160 IGQKTWIRYVVVPGYTDDEEAAHMLGDFIKDMDNIEKIELLPYHKLGAHKWEALGIEYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 220 EGTNPPSKETMDNIVSILEQYHSNV 244
>gi|317504869|ref|ZP_07962825.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM
15606]
gi|315664053|gb|EFV03764.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM
15606]
Length = 286
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 77/238 (32%), Gaps = 42/238 (17%)
Query: 116 LCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
+ Q GC + C FC+ T Q V+ +TA+E+L Q R+ G+ G G +
Sbjct: 64 YIIFLQ-GCPMRCLFCHNPDTWKQNKVKPMTADELLDQAERYRTYWGEKGGITISGGEAL 122
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
+ I + + + L ++ + +G
Sbjct: 123 LQIDFLIELLEKAHARQ-------INTCLDTSAQP-----------FTRNGLWFTKFERL 164
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
++ + + + + ++ L L+ C Y + +V++ GI
Sbjct: 165 MKVTDTVLLDIKHIRDEEHRKLTKFTNHNILD-----CARYLSEIQK-PVWIRHVLIPGI 218
Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVT 336
D+ L L + +I+++P++ +Y Q+ I
Sbjct: 219 TDNDEYLHELAAFLNTLHNIERIDILPYHTLGTYKYDELHLDYPLKGVEPPTQERIDN 276
>gi|221198785|ref|ZP_03571830.1| radical SAM domain protein [Burkholderia multivorans CGD2M]
gi|221181236|gb|EEE13638.1| radical SAM domain protein [Burkholderia multivorans CGD2M]
Length = 370
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 45/254 (17%), Positives = 80/254 (31%), Gaps = 31/254 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 129 TCIRYESR-RKTCQFCSIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPP 187
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ D + + T G
Sbjct: 188 TPDRGARVLCESAFAIKAAVDLPIQAQCEPPDDDSWFDRMKASGIDTLGM---------- 237
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ +R ++P PL + A R G+ R +L G+ D
Sbjct: 238 -------HLEAVTPAVRERIMPGKASVPLSRYMAAFRAAVGVFG--RGQVSTYILAGLGD 288
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
S L++ + L G+ ++PF P G + ++ G + +R
Sbjct: 289 SAAAILDMSRELIGLGVYPFVVPFVPISGTPLESHPAPSPDFMRA---VLEPLG--AMLR 343
Query: 352 TP--RGLDILAACG 363
R DI A CG
Sbjct: 344 DAGMRSADIKAGCG 357
>gi|221205046|ref|ZP_03578062.1| radical SAM domain protein [Burkholderia multivorans CGD2]
gi|221174837|gb|EEE07268.1| radical SAM domain protein [Burkholderia multivorans CGD2]
Length = 356
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 45/254 (17%), Positives = 80/254 (31%), Gaps = 31/254 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 115 TCIRYESR-RKTCQFCSIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPP 173
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ D + + T G
Sbjct: 174 TPDRGARVLCESAFAIKAAVDLPIQAQCEPPDDDSWFDRMKASGIDTLGM---------- 223
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ +R ++P PL + A R G+ R +L G+ D
Sbjct: 224 -------HLEAVTPAVRERIMPGKASVPLSRYMAAFRAAVGVFG--RGQVSTYILAGLGD 274
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
S L++ + L G+ ++PF P G + ++ G + +R
Sbjct: 275 SAAAILDMSRELIGLGVYPFVVPFVPISGTPLESHPAPSPDFMRA---VLEPLG--AMLR 329
Query: 352 TP--RGLDILAACG 363
R DI A CG
Sbjct: 330 DAGMRSADIKAGCG 343
>gi|317132372|ref|YP_004091686.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
gi|315470351|gb|ADU26955.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
Length = 452
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 40/263 (15%), Positives = 85/263 (32%), Gaps = 35/263 (13%)
Query: 51 QGMS-DISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP 109
+ M+ + Q+ L + + E+ A G + VY
Sbjct: 37 EDMTRVLPQKAGERLAARYGVNALREAWEE------------LFALKEDGRLFSPDVYAA 84
Query: 110 EKSRG------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
++ G ++C++ C+L CS+C+ T R L+ G
Sbjct: 85 YRNAGDMAPVKSMCLNVAHDCNLRCSYCFASTGDFGG-------------GRKLMPFSVG 131
Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
+ ++ ++ + R+ + G GEP+ NFD VK+ ++ ++ + R T +T+
Sbjct: 132 KQAVDFLLEHAGNRRNLELDFFG-GEPMMNFDVVKEVVAYGREAEQKAGKHIRFTTTTNA 190
Query: 224 FV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
V + +S+ + + I+ + ++ + R
Sbjct: 191 LVLDDEKIDFINREMYNVVLSIDGRQSVHDRMRRRIDGSGSYQTILANIKRLVERREHRN 250
Query: 282 ITFEYVMLKGINDSPRDALNLIK 304
D D L L
Sbjct: 251 YYVRGTFTHENLDFAEDVLALAD 273
>gi|210621731|ref|ZP_03292780.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275]
gi|210154613|gb|EEA85619.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275]
Length = 303
Score = 44.7 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 35/235 (14%)
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C C T V N A EI+ + LL + + G
Sbjct: 82 KCELCSTCLDYCVNN--AREIVGDEYTVKELLKLIEKDRMFYEESGG-------GVTLSG 132
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
+ + D + + G + + T G+ P + +
Sbjct: 133 GEVMVQDIDFICELAR------GCRNKGIDVAIDTCGYAPTEHYEKILPYANRFLFDIKL 186
Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN--DSPRDALNLIK 304
++ ++ + + N I ++ G+N D+ + + +I+
Sbjct: 187 VDEDKHKKFTGKSNDLILKNLKFLND-----NGAYINIRIPLIGGVNVDDNNEEVMKMIE 241
Query: 305 ILKGIPAK-INLIPFNPW------------PGCEYLCSDQKDIVTFSECIKRSGY 346
+LK + K +NL+P++ G E+ + + + + +
Sbjct: 242 LLKPLNIKAVNLLPYHDIGKHKYTKLDKEYEGNEFTKPSDEKMNEIKMIFENNNF 296
>gi|312110886|ref|YP_003989202.1| lysine 2,3-aminomutase YodO family protein [Geobacillus sp.
Y4.1MC1]
gi|311215987|gb|ADP74591.1| lysine 2,3-aminomutase YodO family protein [Geobacillus sp.
Y4.1MC1]
Length = 378
Score = 44.7 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 35/291 (12%), Positives = 83/291 (28%), Gaps = 56/291 (19%)
Query: 45 RGIRDFQGMSDISQEVRHLLNQ----------HFSIIYP------EIVDEKISCDGTRKW 88
+ I + + ++ I +E R L + + + + + + + +
Sbjct: 5 KYITNIEKITQIPKEEREKLKKITNKYVFRVNEYYLNLINWDDPNDPIRKLVIPNEGELN 64
Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
+ K + T + C C FC + L ++
Sbjct: 65 EYGSWDASDEEANYVVPGC-QHKYKTTALLIVSEVCGAYCRFC------FRKRLFRSDV- 116
Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
+ G+ + +I+N+++ G + +++ +
Sbjct: 117 -----------KEAMSDVTPGIEYIAQTPEINNVLLTGGDSLILATKKIRQIVE------ 159
Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML-- 266
R + + +++ M + + R P R Y + +
Sbjct: 160 ------RLRAIDHVKIIRFGSKL-PVFNPMRIYEDQELLDLFRQYSTPEKRIYVMAHVNH 212
Query: 267 -----IDACRHYPGLSNARRITFEYV-MLKGINDSPRDALNLIKILKGIPA 311
+A + + L +A I +LKGIND P L+ L
Sbjct: 213 PREITEEARKAFQALHDAGVIVVNQTPILKGINDDPEVLAELLDKLSWAGV 263
>gi|163814895|ref|ZP_02206283.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759]
gi|158449834|gb|EDP26829.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759]
Length = 461
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 20/220 (9%)
Query: 92 FPARCIGGPVEIETVYIPEKSRGTL----CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
+ + I K R T+ C+ C+L C +C+ G + +
Sbjct: 66 VEDGTLFTDDVYKDYIIDFKKRKTVVKALCLHIAHDCNLACRYCFAGEGEYKGD------ 119
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
R+L+ + ++ +V S R+ + G GEPL N+D VKK++
Sbjct: 120 -------RALMSLEVAKKSLDFLVANSGFRRNLEVDFFG-GEPLMNWDVVKKTVEYGRSL 171
Query: 208 MGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
K R TL+T+G + I + +S+ + N K ++
Sbjct: 172 EEKYDKKFRFTLTTNGVLLNDEIMEFANREMANVVLSIDGRKEVHDYMRPTRNGKGSYDV 231
Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
++ + + + D D L++ +
Sbjct: 232 ILSKFQEFAKKRAGKSYYVRGTYTHNNLDFSNDVLHMADL 271
>gi|296158481|ref|ZP_06841312.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
gi|295891425|gb|EFG71212.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
Length = 370
Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 33/255 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + +C FC G A + Q+ +AR+ + + P
Sbjct: 129 TCIRYESR-RKSCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPP 187
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D + + T G
Sbjct: 188 TPDRGAQILCESAFAIKAAVDLPIQAQCEPPDDDRWFARMKASAIDTLGM---------- 237
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ +LR ++P PL ++A + + R +L G+ D
Sbjct: 238 -------HLEVVTPELRERIMPGKASVPLSRYMEAFKSAVAVFG--RGQVSTYVLAGLGD 288
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSG---YSS 348
S L + + L + ++PF P G + + ++ G ++
Sbjct: 289 SAEAILAMSRELIDLGVYPFVVPFVPISGTPLEDHPAPTPEFMK---SVLQPLGGMLNAA 345
Query: 349 PIRTPRGLDILAACG 363
+R+ DI A CG
Sbjct: 346 AMRSS---DIKAGCG 357
>gi|163802103|ref|ZP_02195999.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4]
gi|159174244|gb|EDP59052.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4]
Length = 246
Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 30/266 (11%), Positives = 79/266 (29%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + V Q GC + C +C + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCKYC-HNRDTWDTHDGKEVTVEEIIAEAKTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + E + D+ G
Sbjct: 66 FMNASGGGITCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNGYVRKHTE 115
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
+ + ++ + L + ++ + ++ + ++D R+ +
Sbjct: 116 V-----------IDEVLDATDLVMLDLKHMKDETHQEFIGVSNR----RVLDFARYLHKV 160
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------- 327
++ YV++ G D P A L + ++ + K+ L+P++ ++
Sbjct: 161 --GQKTWIRYVVVPGYTDEPEAAHMLGEFIENMDNIEKVELLPYHKLGAHKWEALGIEYP 218
Query: 328 -----CSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 219 LEGVNPPSKETMDEIQSILSQYHPNV 244
>gi|51891252|ref|YP_073943.1| pyruvate formate lyase activating enzyme [Symbiobacterium
thermophilum IAM 14863]
gi|51854941|dbj|BAD39099.1| pyruvate formate lyase activating enzyme [Symbiobacterium
thermophilum IAM 14863]
Length = 255
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN------------ 319
+ I YV++ G DSP D L +++ +P K+ L+P++
Sbjct: 166 LAAAMGIPIWIRYVVVPGWTDSPADVEALADLVQTLPTVEKVELLPYHLLGRHKWEALGL 225
Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
P+ ++ + + + G +
Sbjct: 226 PYGLDGVAPPSEETLARIRQQLADRGIPA 254
>gi|209518779|ref|ZP_03267593.1| Radical SAM domain protein [Burkholderia sp. H160]
gi|209500749|gb|EEA00791.1| Radical SAM domain protein [Burkholderia sp. H160]
Length = 376
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 41/251 (16%), Positives = 75/251 (29%), Gaps = 25/251 (9%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 135 TCIRYESR-KKTCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVRHMVLTTGTPP 193
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D + + T G
Sbjct: 194 TPDRGAQILCESAFAIKAAVDLPIQAQCEPPDDDVWFERMKASGIDTLGM---------- 243
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ +R ++P P+ ++A + R +L G+ D
Sbjct: 244 -------HLEVVTPAVRARVMPGKASVPISRYMEAFEAAVAVFG--RGQVSTYILAGLGD 294
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR--T 352
+ L++ + L I ++PF P G + G + +R
Sbjct: 295 TAEAILSISRELIDIGVYPFVVPFVPISGTPLEDHPAPAAEFMKSILAPLG--AMLREAK 352
Query: 353 PRGLDILAACG 363
R DI A CG
Sbjct: 353 MRSADIKAGCG 363
>gi|295105390|emb|CBL02934.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium
prausnitzii SL3/3]
Length = 486
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 85/241 (35%), Gaps = 21/241 (8%)
Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL----CVSSQVGCSL 126
P++ +E + L+ + P + + K+R T+ C+ C+L
Sbjct: 53 SRPDVTEEDLRQCIDDVTSLK-ENGKLWSPDVYKDMAFDFKNRNTVVKALCLHVAHSCNL 111
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
+CS+C+ + + R+L+ G ++ ++ S R+ + G
Sbjct: 112 SCSYCFASQGRYHGD-------------RALMSFEVGKRAMDFLIENSGTRRNLEVDFFG 158
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLH 244
GEPL NF+ VKK ++ + + R T++T+G + ++ + + +SL
Sbjct: 159 -GEPLMNFEMVKKLVAYCREQEKIHNKNFRFTMTTNGVLIDDDVIDFCNKECHNVVLSLD 217
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
V + ++ + + + D D ++
Sbjct: 218 GRKEVNDRFRVDCAGNGSYDRIVPKFQEFVKKRGDKNYYMRGTYTHFNTDFTNDIFHMAD 277
Query: 305 I 305
+
Sbjct: 278 L 278
>gi|227833911|ref|YP_002835618.1| pyruvate formate lyase activating enzyme [Corynebacterium
aurimucosum ATCC 700975]
gi|262184914|ref|ZP_06044335.1| pyruvate formate lyase activating enzyme [Corynebacterium
aurimucosum ATCC 700975]
gi|227454927|gb|ACP33680.1| pyruvate formate lyase activating enzyme [Corynebacterium
aurimucosum ATCC 700975]
Length = 289
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 42/292 (14%), Positives = 81/292 (27%), Gaps = 55/292 (18%)
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
PE++ + S D G T GC L C +C
Sbjct: 37 RPELMQARRSGDVALVHSWELVTAVDGPG--------------TRMTMFMSGCPLRCQYC 82
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
+ + E + V + + P + G + S G + I
Sbjct: 83 -HNPDTMEMKVGTLERIEDV--VKRIKRYKPVFKASGGGLTISGGEPLFQIAFARRL--- 136
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
V + T+ TSG++ R + + L + ++
Sbjct: 137 --LKEVHDAGI-------------HTTIDTSGYLGARLRDEDLDNIDLVLLDVKSGDEET 181
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
V P D + + +V++ G+ D P + N+ KI+ +
Sbjct: 182 YKKVTRRELQPTIDFGDRLNAI-----GKPVWIRFVVVPGLTDGPENVANVAKIVSRWKS 236
Query: 312 KINLI---PFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
I I PF+ ++ +D+ E ++ G+
Sbjct: 237 NIERIEVLPFHNMGADKWHELGYPYTLEDTKPPKPEDVEEIREVFRKEGFVV 288
>gi|313114194|ref|ZP_07799746.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310623603|gb|EFQ07006.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 487
Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 20/210 (9%)
Query: 102 EIETVYIPEKSRGTL----CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
E + K+R T+ C+ C+L CS+C+ + + R+L
Sbjct: 87 TYENMAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRYQGD-------------RAL 133
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G ++ ++ S R+ + G GEPL NFD VKK ++ + + R
Sbjct: 134 MSFEVGKRAMDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRF 192
Query: 218 TLSTSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
T++T+G ++ + + +SL + ++ + +
Sbjct: 193 TMTTNGMLIDDDVIDFCNKECHNVVLSLDGRKEVNDRFRKDYAGHGSYDTIVPKFQEFVK 252
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ D D ++ +
Sbjct: 253 KRGDKNYYMRGTYTHYNTDFTNDIFHMADL 282
>gi|295108468|emb|CBL22421.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus obeum
A2-162]
Length = 454
Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 16/232 (6%)
Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
+ +S G K R + + E + LC+ C+L C +C+
Sbjct: 59 IRTSVSECGKLKEQGMLFTRDVYENIIEEFTENRQTVVKALCLHIAHDCNLACRYCFA-- 116
Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
E R L F + +I + G + + V GEPL N+
Sbjct: 117 -------EEGEY-----HGRRALMSFEVGKKALDFLIANSGSRKNLEVDFFGGEPLMNWQ 164
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNI 253
VK ++ + L K R TL+T+G + + + + +S+ +
Sbjct: 165 VVKDLVAYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFCNKEMGNVVLSVDGRKEVHDYM 224
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+++I R + N + D +D L+L +
Sbjct: 225 RPFRKGAGSYDLIIPKFRKFAESRNQDKYYVRGTFTHHNLDFSKDVLHLADL 276
>gi|304440494|ref|ZP_07400381.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304370972|gb|EFM24591.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 451
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 16/209 (7%)
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
P ++ VY P+ +C+ C+L C +C+ L
Sbjct: 77 EDPRLMKAVYNPQNIIKAMCLHVSHDCNLRCKYCFASQGDF--------------HGERL 122
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
L D + ++ + G + + V GEPL NF+ VKK + + R
Sbjct: 123 LMDLETGKAAIDFLLENSGNRRNLEVDFFGGEPLMNFNLVKKLVEYGDEREKEYGKNFRW 182
Query: 218 TLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
TL+T+G + I E + +S+ ++ IN K ++++ +
Sbjct: 183 TLTTNGMLLNDEINEFLNEHMSNVVLSIDGRKKINDDMRPTINGKGSYDIIVPKFKKLIE 242
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIK 304
+ D D + +
Sbjct: 243 GRGDKDYYIRGTFTNKNLDFGEDLKDFYE 271
>gi|307727788|ref|YP_003911001.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003]
gi|307588313|gb|ADN61710.1| Radical SAM domain protein [Burkholderia sp. CCGE1003]
Length = 377
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 29/253 (11%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 136 TCIRYESR-KKTCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPP 194
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D+ + + T G
Sbjct: 195 TPDRGAQILCESAFAIKAAVDLPIQAQCEPPDNDAWFERMKASGIDTLGM---------- 244
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ ++R ++P P+ +DA + G+ ++ +L G+ D
Sbjct: 245 -------HLEVVTPEVRARVMPGKASVPISRYMDAFKAAVGVFGKGQV--STYILAGLGD 295
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSE-CIKRSGYSSPIRT 352
+ L++ + L + ++PF P G + F + ++ G + +R
Sbjct: 296 TAEAILSISRELIDMGVYPFVVPFVPISGTPLEDHPPPSHV--FMKSILEPLG--AMLRD 351
Query: 353 P--RGLDILAACG 363
R DI A CG
Sbjct: 352 AQMRSADIKAGCG 364
>gi|299144022|ref|ZP_07037102.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518507|gb|EFI42246.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 448
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 16/152 (10%)
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+ +Y P+ +C+ C+L C +C+ + L
Sbjct: 77 EDKRLFKPIYNPDNIVKAMCLHVAHDCNLRCKYCFASQGDFNG--------------KRL 122
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
L D + ++ + G + + V GEPL NF+ VKK + + R
Sbjct: 123 LMDEETGKKALDFILKNSGNRKNLEVDFFGGEPLMNFELVKKLVDYGRNEEKKYNKHFRF 182
Query: 218 TLSTSGFV--PNIARVGEEIGVMLAISLHAVS 247
T++T+G + ++ E + +SL
Sbjct: 183 TITTNGVLLRDDVIDYINENMDNVVLSLDGRK 214
>gi|39997200|ref|NP_953151.1| pyruvate formate-lyase-activating enzyme [Geobacter sulfurreducens
PCA]
gi|39984090|gb|AAR35478.1| pyruvate formate-lyase-activating enzyme, putative [Geobacter
sulfurreducens PCA]
Length = 298
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC-------- 328
I ++ G+ND + + P +NL+P++ +
Sbjct: 211 HDTIWIRIPIIPGVNDDRANLEATAALAARTPGVRQVNLLPYHRTWHGKLRQLGRAGADD 270
Query: 329 ----SDQKDIVTFSECIKRSGYSSPI 350
++ + + +G ++ I
Sbjct: 271 AIATPSRERMEELVRIFRAAGLTTII 296
>gi|298506217|gb|ADI84940.1| glycerol dehydratase-activating enzyme, putative [Geobacter
sulfurreducens KN400]
Length = 298
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC-------- 328
I ++ G+ND + + P +NL+P++ +
Sbjct: 211 HDTIWIRIPIIPGVNDDRANLEATAALAARTPGVRQVNLLPYHRTWHGKLRQLGRAGADD 270
Query: 329 ----SDQKDIVTFSECIKRSGYSSPI 350
++ + + + +G ++ I
Sbjct: 271 AIATPSRERMEELARIFRAAGLTTII 296
>gi|189423958|ref|YP_001951135.1| molybdenum cofactor biosynthesis protein A [Geobacter lovleyi SZ]
gi|189420217|gb|ACD94615.1| molybdenum cofactor biosynthesis protein A [Geobacter lovleyi SZ]
Length = 326
Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats.
Identities = 35/206 (16%), Positives = 70/206 (33%), Gaps = 30/206 (14%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+L C +C + + A L + + I
Sbjct: 16 LSVTDRCNLRCIYC-----------MPAAGVHAIKHADVLSFEELLTVSRAAVAIGVEKI 64
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEI 235
+++ GEPL V+K + + + +R+ L+T+G A +
Sbjct: 65 RVTG------GEPL-----VRKGIIPFLAELATTPGLKRLVLTTNGILLPEMAAELRCAG 113
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
L ISL ++ D + + + I A + +RI V+++G+ND
Sbjct: 114 VESLNISLDSLQPDTFDSITRGGNILKVFEGIKA----AEEAGFKRIKINMVVIRGVNDH 169
Query: 296 PRDALNLIKILKGIPAKINLIPFNPW 321
+ + + P + I + P
Sbjct: 170 --EVADFAALTLKRPYHVRFIEYMPT 193
>gi|226324375|ref|ZP_03799893.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758]
gi|225206823|gb|EEG89177.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758]
Length = 299
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 73/240 (30%), Gaps = 37/240 (15%)
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
C C G EI+ Q + L+ + V ++
Sbjct: 79 KEKCQLC--GKCDNFCPQGIREIVGQEYPVKELVKELMKDRMFYEQSGGGVTLSGGEVMA 136
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
M L + K+L +T+ T G+V V +
Sbjct: 137 MSTDYILQ----IAKALKKEEI---------SLTIDTCGYVSYDKFEAILPYVDTFLYDV 183
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNLI 303
V + + KY + LS+ RI +K +N + ++ + I
Sbjct: 184 KVMDPELHK------KYIGVDNKLILDNLVKLSDAGARIYIRIPTIKEVNGNVQNMEDTI 237
Query: 304 KILK---GIPAKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
LK PA++NL+P++ +Y +++++ +F + + +
Sbjct: 238 HFLKKHGIHPAQVNLLPYHNTGSSKYPKLGMEYKGTDLHAPEKEEMESFVKLFRMQDIPT 297
>gi|240142718|ref|YP_002967231.1| putative oxidoreductase [Methylobacterium extorquens AM1]
gi|240012665|gb|ACS43890.1| Putative oxidoreductase [Methylobacterium extorquens AM1]
Length = 377
Score = 43.9 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 35/256 (13%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P+
Sbjct: 131 TCIRYASR-AKTCQFCSIGQSLAAGRTVARKTPEQLAEVARAAVLLDGVKHMVMTTGTPN 189
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ D + + G
Sbjct: 190 ATDRGAAVLCESAFAVKAAVDLPIQAQCEPPDDDRWFERMKASGIDALGM---------- 239
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ ++R ++P PLE +A + R +L G+ D
Sbjct: 240 -------HLEAVTPEVRARIMPGKASVPLERYYEAFAA--AVPVFGRGQVSTYILAGLGD 290
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSECIKRSGYS 347
+P L + + L G+ ++PF P G + ++ + ++
Sbjct: 291 TPEAILEMAERLVGLGVYPFVVPFVPISGTPLESHPAPGPDFMHAVLKPLADMLAQANLR 350
Query: 348 SPIRTPRGLDILAACG 363
S DI A CG
Sbjct: 351 ST-------DIKAGCG 359
>gi|224368087|ref|YP_002602250.1| NifB2 [Desulfobacterium autotrophicum HRM2]
gi|223690803|gb|ACN14086.1| NifB2 [Desulfobacterium autotrophicum HRM2]
Length = 424
Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 78/234 (33%), Gaps = 36/234 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C+FC + N + + +L P + + + IS +
Sbjct: 27 RCNIQCNFC--NRKFDCVNESRPGVCSSIL--------SPFQAMEYLKQVVNRKKNISVV 76
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLA 240
+ G G+P N + ++ + S + + L+++G + + ++
Sbjct: 77 GIAGPGDPFANPEQTLTTIEMIS----KKYPDMLLCLASNGLNLPEYLDDIARFNVSHVS 132
Query: 241 ISLHAVSNDL-----------RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
I+++A+ + + L P L A + ++L
Sbjct: 133 ITINAIDLAISEKIYSWVRFGKKSLAPGQGVKLLLEKQLASVAGLKER-GIIVKVNTIVL 191
Query: 290 KGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEY---LCSDQKDIVTFS 338
GIND A + K+ + N +P+ P G + +++I
Sbjct: 192 PGINDHHVTDIAKEMAKMGVDLL---NCMPYYPNEGSNFAHLREPSREEIAKIQ 242
>gi|281356709|ref|ZP_06243200.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
gi|281316836|gb|EFB00859.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
Length = 321
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 66/226 (29%), Gaps = 29/226 (12%)
Query: 124 CSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
CSL C +C T L R E + V L + + ++
Sbjct: 29 CSLDCIYCEARQTTCLTLERK----EYVP-VDAVIRELDEVLSGKP-----------ELD 72
Query: 181 NIVMMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
I G GEP N V L + L G + V+
Sbjct: 73 FITFSGSGEPTLNSGIGRVVDFLKTRYPQYPVCLLTNGFAL---GDPEVRREIARIDRVV 129
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
++ +R + + Y +++ I E ++ G+NDS
Sbjct: 130 PSLDASNTEEFIR--INRPAPGLEFGRFVKELTAYTQTASSE-IYLELFIVPGVNDSDES 186
Query: 299 ALNLIKILK-GIPAKINLIPFNPWPGCEYLCSD-QKDIVTFSECIK 342
++I++ + L + +++ ++ F ++
Sbjct: 187 IRRFVEIVRGMKLVMVQLNTLDRPGVVDWVRPSTPENTRRFIRALE 232
>gi|238923391|ref|YP_002936907.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale
ATCC 33656]
gi|238875066|gb|ACR74773.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale
ATCC 33656]
Length = 456
Score = 43.9 bits (102), Expect = 0.048, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 83/258 (32%), Gaps = 22/258 (8%)
Query: 50 FQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP 109
F+ + ++E+ L + ++E I K I+
Sbjct: 35 FED--NSAKEIIEKLVDRY---PQTEIEEAIQEVNELKDNEELFTEDTYKERIIDF-KKR 88
Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
+ LC+ C+L C +C+ E R L + +
Sbjct: 89 QTVVKALCLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYETGKQALD 134
Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PN 227
+I + G + + V GEPL N+D VK+ ++ + L R TL+T+G +
Sbjct: 135 FLIANSGSRRNLEVDFFGGEPLMNWDVVKQLVAYGREQEKLHDKHFRFTLTTNGVLLNDE 194
Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
I + + +S+ + ++++ + + + +
Sbjct: 195 IMEFANKEMDNVVLSIDGRKEVHDRMRPFRKGAGSYDLIVPKFQKFAESRHQDKYYVRGT 254
Query: 288 MLKGINDSPRDALNLIKI 305
D +D L+L +
Sbjct: 255 YTHFNTDFSKDVLHLADL 272
>gi|303240613|ref|ZP_07327128.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
gi|302591850|gb|EFL61583.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
Length = 297
Score = 43.9 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 77/273 (28%), Gaps = 31/273 (11%)
Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEIL 148
I + + T C + C C Y VR
Sbjct: 32 WCHSPHSQSIGAPVLFFREYCTGCGKCRAVCKAGCFIVNGENHYFNETNCVRCGKCVLNC 91
Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
LA +L P E + R I I + G GEP+ + K+ L +
Sbjct: 92 SHGALAYNLREGTPEEIFKEIKAELILLRNIGGITLSG-GEPMLQYLEAKELLKLC---K 147
Query: 209 GLSFSKRRITLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
G+ + TSG V E L + + + +E +
Sbjct: 148 GMGA---HTAIETSGAVNIKCFEELLEYVDCWLFGLKQT-DAEKCCAMTGADFNNIEQNL 203
Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNP------ 320
++ +I +++G D + + +I+ I L+P+NP
Sbjct: 204 ----NFLASLVPDKIIIRTPIIEGFTDDIYNIQRIYEIMLSHSLNTIELLPYNPHTGHYY 259
Query: 321 ------WPGCEYLCSDQKDIVTFSECIKRSGYS 347
+ ++ + + +K G +
Sbjct: 260 KAMGKDFDEQKFKLPSEDILKNIVNILKLKGIN 292
>gi|322515207|ref|ZP_08068206.1| pyruvate formate-lyase activating enzyme [Actinobacillus ureae ATCC
25976]
gi|322118817|gb|EFX91018.1| pyruvate formate-lyase activating enzyme [Actinobacillus ureae ATCC
25976]
Length = 245
Score = 43.5 bits (101), Expect = 0.050, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 94/265 (35%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
E+ + + Q GC + C +C +L + + L + ++
Sbjct: 7 HSYESCGTVDGPGIRFILFLQ-GCLMRCKYC-HNRDTW--DLDGGKEISVEYLMKEVVTY 62
Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
+ G V S G + + + + ++ + L
Sbjct: 63 KHFMKATGGGVTASGGEAVLQMEFVR---------DWFRACKVEGID---------TCLD 104
Query: 221 TSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
T+GFV + + V +E+ ++ + L +++++ L+ ++ K L+ Y
Sbjct: 105 TNGFVRHYSPVVDEMLEVTDLVMLDLKQLNDEIHQDLIGVSNKRTLD-----FARYLQKL 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFN-----PWPGCEYL--- 327
N R YV++ G D A L + ++G+ K+ L+P++ W Y
Sbjct: 160 NK-RTWVRYVVVPGYTDDDDSAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYEL 218
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++D+ + I+ G++
Sbjct: 219 DGVLPPPKEDLERIQKIIESYGHTV 243
>gi|59712198|ref|YP_204974.1| pyruvate formate lyase-activating enzyme 1 [Vibrio fischeri ES114]
gi|59480299|gb|AAW86086.1| pyruvate formate lyase activating enzyme 1 [Vibrio fischeri ES114]
Length = 245
Score = 43.5 bits (101), Expect = 0.050, Method: Composition-based stats.
Identities = 32/265 (12%), Positives = 75/265 (28%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
ET + V Q GC + C +C+ T + +T E++ + R
Sbjct: 7 HSFETCGTVDGPGIRFIVFLQ-GCLMRCMYCHNRDTWDTHDGKEVTVAELIEEAKSYRHF 65
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G
Sbjct: 66 MKASGGGITCSGGEAMLQPEFVRDFFRAAQAEG----------IHTCLDTNGYIRKH--- 112
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
++ E ++ + L + +D+ + ++ +
Sbjct: 113 --------TDVIDEVLEASDLVMLDLKQMKDDVHKEFIGVSNT-RVLDFARYLHKI---- 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D A L +K + KI L+P++ ++
Sbjct: 160 -GQKTWIRYVIVPGYTDDEESAHLLGNFIKDMDNIEKIELLPYHKLGAHKWEALGHDYPL 218
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + E + + +
Sbjct: 219 EGVNPPSKETMEKMVEILSQYHNNV 243
>gi|150016877|ref|YP_001309131.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium
beijerinckii NCIMB 8052]
gi|149903342|gb|ABR34175.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium
beijerinckii NCIMB 8052]
Length = 896
Score = 43.5 bits (101), Expect = 0.052, Method: Composition-based stats.
Identities = 51/306 (16%), Positives = 107/306 (34%), Gaps = 53/306 (17%)
Query: 51 QGMSD--ISQE---VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET 105
+++ +++ R L + EI ++ I+ +G +K R +R VE +T
Sbjct: 434 DQITNVMLAKTEMTFRENLYNEYYKEEVEISNKDIAIEGEKKMEARIISREE---VEEKT 490
Query: 106 VYIPEKSRGTLCVSSQV----------GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
P C S+ C+++C++C L + + +
Sbjct: 491 KTHPCF----SCSSAHKYARMHIPIAPKCNISCNYC----------LRKFDCVNESRPGV 536
Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
+ P + ++ S + + + G G+ L NFDNV+++L + + +
Sbjct: 537 TTEVLSPEEAFAKYKLVKSKMDNLKVVGIAGPGDALANFDNVRETLKLIREHD----PEV 592
Query: 216 RITLSTSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID----- 268
LST+G + + ++++A+ + + + +
Sbjct: 593 TFCLSTNGLMLPFYAEELINLGVSHVTVTMNAIDPKITAKVYKFVDYLGVTYTGEEAAQI 652
Query: 269 ------ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPW 321
+ Y + VMLKGIND + K K + A I N++ P
Sbjct: 653 LLNNQLSGIKYLA-DRGIMVKVNIVMLKGINDH--HIEEVTKKAKELGAGITNIMQMIPV 709
Query: 322 PGCEYL 327
G +
Sbjct: 710 KGSVFE 715
>gi|157165730|ref|YP_001467188.1| radical SAM domain-containing protein [Campylobacter concisus
13826]
gi|112801435|gb|EAT98779.1| nitrogenase cofactor biosynthesis protein NifB [Campylobacter
concisus 13826]
Length = 275
Score = 43.5 bits (101), Expect = 0.056, Method: Composition-based stats.
Identities = 47/271 (17%), Positives = 86/271 (31%), Gaps = 59/271 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C+FC + + E + P + + IS I
Sbjct: 33 RCNIQCNFC-----NRIYDCANENRPGVTAKVQ-----TPDESVKFLEKLFKFRQDISVI 82
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240
+ G G+P+C+ D + F + LST+G ++ + +
Sbjct: 83 GIAGPGDPMCDADKTLATFEKCKS----HFPNALLCLSTNGLALPEHVDEIVRLGVSHVT 138
Query: 241 ISLHAVSNDLRNI---LVPINRKYPLEMLIDACRHYPGLSNA---------RRITFEYVM 288
++++AV+ D+ + V K +A R + + V+
Sbjct: 139 VTVNAVTPDVGSKVYSWVRYEGKNYYGE--EAARILLARQDKGIRKLKEAGMLVKINTVV 196
Query: 289 LKGINDSPRDALNLIKILKGIPAKI-N---LIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
+ G+N ++ K A I N +IP + P ++I
Sbjct: 197 IPGVN--IDHVQSISAKAKQWGADIMNCMAMIPVHDTPFENLKSPSTEEIHR-------- 246
Query: 345 GYSSPIRTPRGLDIL---------A-ACGQL 365
IR G DI A ACG+L
Sbjct: 247 -----IRRSIGDDIDQMTHCSRCRADACGKL 272
>gi|160879028|ref|YP_001557996.1| radical SAM domain-containing protein [Clostridium phytofermentans
ISDg]
gi|160427694|gb|ABX41257.1| Radical SAM domain protein [Clostridium phytofermentans ISDg]
Length = 489
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 39/247 (15%), Positives = 80/247 (32%), Gaps = 19/247 (7%)
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETV---YIPEKSRGTLCVSS 120
L + + + + + ++IS ++ + + E LC+
Sbjct: 79 LAEDYPGLTKDSLKQEISNIYDEVTKMKEDGNLFTEDIYENYIGSFKKRETVVKALCLHI 138
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
C+L C +C+ E R L + + +I + G + +
Sbjct: 139 AHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKQALDFLIANSGSRKN 184
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVM 238
V GEPL NF VK ++ + K R TL+T+G + +I +
Sbjct: 185 LEVDFFGGEPLMNFQVVKDLVAYGRSQEEIHNKKFRFTLTTNGVLLNDDIIEFANKEMSN 244
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ +S+ + N K +++I + + N D D
Sbjct: 245 VVLSIDGRREVNDTMRPFRNGKGSYDLIIPKFKKFADSRNQTNYYVRGTFTHNNLDFSED 304
Query: 299 ALNLIKI 305
+L ++
Sbjct: 305 VKHLAEL 311
>gi|91793759|ref|YP_563410.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
denitrificans OS217]
gi|91715761|gb|ABE55687.1| Pyruvate formate-lyase activating [Shewanella denitrificans OS217]
Length = 245
Score = 43.5 bits (101), Expect = 0.059, Method: Composition-based stats.
Identities = 34/243 (13%), Positives = 71/243 (29%), Gaps = 38/243 (15%)
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
GC + C +C +L + L ++ P + G V S G I
Sbjct: 26 MQGCLMRCQYC-HNRDSW--DLDGGTRVSVAELMAKIIDYKPFLDASNGGVTASGGEAIL 82
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
V + D+ L T+GFV + +E+
Sbjct: 83 QAEF------------VAELFKACKDNHI------HTCLDTNGFVRKYIPIIDELLDNTD 124
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+ L + + + + + L A Y ++ YV++ G A+
Sbjct: 125 LVLLDIKQMFDDKHIALTKVSNQRTLEFA--QYLAKR-GQKTWIRYVVIDGFTADEASAI 181
Query: 301 NLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSGY 346
L +K + K+ L+P++ ++ ++ + G
Sbjct: 182 ALADFIKPMTNVEKVELLPYHQLGAHKWQAFGESYSLSHVSPPSKETMERICGVFNARGI 241
Query: 347 SSP 349
++
Sbjct: 242 NAS 244
>gi|134297917|ref|YP_001111413.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens
MI-1]
gi|134050617|gb|ABO48588.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens
MI-1]
Length = 229
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 30/218 (13%)
Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
G CV GC L C +C+ N ++L + + D +
Sbjct: 18 GIRCVVFFQGCLLRCRYCH--------NPDTWDLLG----GQEMDSDEIVKKVRRFKSYF 65
Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
I+ + GEPL D ++ G+ + G + I +
Sbjct: 66 HNNGGIT----LSGGEPLLQPD-FAFAILQQCKKEGIHTAVDTSGCIDVGALEKILPFTD 120
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+L + + AV + L + L Y + YV+L G+N
Sbjct: 121 ----LLLLDVKAVDDSLYHWLTGGK-----AETFQMAVDYIRQQ-KTPLWLRYVVLPGMN 170
Query: 294 DSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLC 328
DSP L K++ + K+ L+P++ ++
Sbjct: 171 DSPEYRYRLEKLINSLGDQVKKVELLPYHTMGVHKWKK 208
>gi|153952959|ref|YP_001393724.1| glycyl radical activating protein [Clostridium kluyveri DSM 555]
gi|146345840|gb|EDK32376.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM
555]
Length = 258
Score = 43.5 bits (101), Expect = 0.062, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPFNPWP-----------G 323
+ +I +++K +N + ++ L+ I NL+P++ +
Sbjct: 170 HRGKINLRLILIKDVNVDDQAICGIVDWLQEQNISIESINLLPYHDFGRDKYRNLNRECT 229
Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPI 350
+ + + E +++GYS +
Sbjct: 230 QNFEKPSDERMNEIKEYFEKAGYSVKV 256
>gi|219853617|ref|YP_002470739.1| hypothetical protein CKR_0274 [Clostridium kluyveri NBRC 12016]
gi|219567341|dbj|BAH05325.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 266
Score = 43.5 bits (101), Expect = 0.064, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPFNPWP-----------G 323
+ +I +++K +N + ++ L+ I NL+P++ +
Sbjct: 178 HRGKINLRLILIKDVNVDDQAICGIVDWLQEQNISIESINLLPYHDFGRDKYRNLNRECT 237
Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPI 350
+ + + E +++GYS +
Sbjct: 238 QNFEKPSDERMNEIKEYFEKAGYSVKV 264
>gi|254229008|ref|ZP_04922429.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25]
gi|262394749|ref|YP_003286603.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
gi|151938476|gb|EDN57313.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25]
gi|262338343|gb|ACY52138.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
Length = 246
Score = 43.5 bits (101), Expect = 0.064, Method: Composition-based stats.
Identities = 31/263 (11%), Positives = 77/263 (29%), Gaps = 47/263 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + V Q GC + C +C + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCKYC-HNRDTWDTHDGKEVTVEEIISEAKSYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + E + D+ G
Sbjct: 66 FMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNGYVRKH-- 113
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
++ + ++ + + + +++ L+ ++ + L+ Y
Sbjct: 114 ---------TDVIDEVLDATDLVMLDIKHMKDEVHQDLIGVSNRRTLD-----FARYLQK 159
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------- 327
+ YV++ G D P A L + +K + K+ L+P++ ++
Sbjct: 160 IGK-KTWIRYVVVPGYTDDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYP 218
Query: 328 -----CSDQKDIVTFSECIKRSG 345
++ + + +
Sbjct: 219 LEGVNPPPKETMDEIQSILAQYN 241
>gi|308233496|ref|ZP_07664233.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM
15829]
gi|328943744|ref|ZP_08241209.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
15829]
gi|327491713|gb|EGF23487.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
15829]
Length = 257
Score = 43.1 bits (100), Expect = 0.064, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPG--------- 323
++ I ++ N+S DA ++ K + K+ L+PF+ +
Sbjct: 168 YAFTHNTHIVLRIPVIPDFNNSLEDAAQFGQLFKKMHVNKVQLLPFHQFGENKYKLLKRV 227
Query: 324 ---CEYLCSDQKDIVTFSECIKRSGYSS 348
+Y +D+ + + + + G +
Sbjct: 228 YQMGKYKPLHPEDLYDYRDVLCKQGINC 255
>gi|91225254|ref|ZP_01260422.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
12G01]
gi|91189893|gb|EAS76165.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
12G01]
Length = 246
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 31/263 (11%), Positives = 77/263 (29%), Gaps = 47/263 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + V Q GC + C +C + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCKYC-HNRDTWDTHDGKEVTVEEIISEAKSYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + E + D+ G
Sbjct: 66 FMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNGYVRKH-- 113
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
++ + ++ + + + +++ L+ ++ + L+ Y
Sbjct: 114 ---------TDVIDEVLDATDLVMLDIKHMKDEVHQDLIGVSNRRTLD-----FARYLQK 159
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------- 327
+ YV++ G D P A L + +K + K+ L+P++ ++
Sbjct: 160 IGK-KTWIRYVVVPGYTDDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYP 218
Query: 328 -----CSDQKDIVTFSECIKRSG 345
++ + + +
Sbjct: 219 LEGVNPPPKETMDEIQSILAQYN 241
>gi|91784391|ref|YP_559597.1| hypothetical protein Bxe_A1409 [Burkholderia xenovorans LB400]
gi|91688345|gb|ABE31545.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
Length = 356
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 80/255 (31%), Gaps = 33/255 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + +C FC G A + Q+ +AR+ + + P
Sbjct: 115 TCIRYESR-RKSCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPP 173
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D + + T G
Sbjct: 174 TPDRGAQILCESAFAIKAAVDLPIQAQCEPPDDDRWFARMKASGIDTLGM---------- 223
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ +LR ++P PL ++A R + R +L G+ D
Sbjct: 224 -------HLEVVTPELRERIMPGKASVPLSRYMEAFRSAVAVFG--RGQVSTYILAGLGD 274
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSG---YSS 348
S L + + L + ++PF P G + + ++ G ++
Sbjct: 275 SAEAILTMSRELIELGVYPFVVPFVPISGTPLEDHPAPTPEFMK---SVLQPLGGMLNAA 331
Query: 349 PIRTPRGLDILAACG 363
+R+ DI A CG
Sbjct: 332 AMRSS---DIKAGCG 343
>gi|297587385|ref|ZP_06946030.1| radical SAM domain protein [Finegoldia magna ATCC 53516]
gi|297575366|gb|EFH94085.1| radical SAM domain protein [Finegoldia magna ATCC 53516]
Length = 452
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 24/234 (10%)
Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
+ IE E +C+ C+L C +C+ + +
Sbjct: 73 SSDDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------K 119
Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
+ + + G + ++ +V S RK + G GEPL +F+ VKK + ++ K
Sbjct: 120 AYMTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIADEKGKKF 178
Query: 216 RITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
R T++T+G + + + + +SL + N+ +N K ++++ +
Sbjct: 179 RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVNDNMRKTLNDKGSYDLIVPKFQKL 238
Query: 274 PGLSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ + N D D + + + + I P +Y
Sbjct: 239 IKGRKG-KYYYVRGTFTKKNLDFSEDVKHFKDLGFELSS----IE--PVVDSDY 285
>gi|296116848|ref|ZP_06835454.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
[Gluconacetobacter hansenii ATCC 23769]
gi|295976649|gb|EFG83421.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
[Gluconacetobacter hansenii ATCC 23769]
Length = 369
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 43/283 (15%), Positives = 77/283 (27%), Gaps = 43/283 (15%)
Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
W + + I R T C FC G A +
Sbjct: 110 WKIALLHGRDTLATTVHQTCIRYVDRRT-----------ACQFCAIGQSLEAGRTIAHKT 158
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
Q+ + G D+ N+V G + +K ++ +
Sbjct: 159 PAQLAEVARAAVELDGVRDMVLTTGTP------NMVDRGAAVLAESARAIKAAVDLPL-- 210
Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
R R+ + L + L A + +R ++P ++ +
Sbjct: 211 QVQCEPPR--------DHDWFHRLRDAGADSLGMHLEAATQAVREKIMPGKATVSIDRYM 262
Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
+A + R +L G+ DS D L L L + ++PF P G
Sbjct: 263 EAFA--SAVPIFGRGQVNTYILAGLGDSAEDILALAGRLIALGVYPFVVPFVPISGTPLE 320
Query: 328 ---CSDQKDIVT----FSECIKRSGYSSPIRTPRGLDILAACG 363
+ + ++ + S DI A CG
Sbjct: 321 NHAPPSSDFMKSVLAPLGRMLREANMKST-------DIRAGCG 356
>gi|169404759|pdb|3CAN|A Chain A, Crystal Structure Of A Domain Of Pyruvate-Formate Lyase-
Activating Enzyme From Bacteroides Vulgatus Atcc 8482
Length = 182
Score = 43.1 bits (100), Expect = 0.068, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPW--------------P 322
+++G+N ++ + L +P INL+P++
Sbjct: 93 FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPK 152
Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPI 350
G + ++ + + G + I
Sbjct: 153 GYKXQTPSEEVQQQCIQILTDYGLKATI 180
>gi|37525557|ref|NP_928901.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36784985|emb|CAE13905.1| pyruvate formate-lyase 1 activating enzyme (PFL-activating enzyme)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 246
Score = 43.1 bits (100), Expect = 0.068, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 81/266 (30%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV----RNLTAEEILLQVLLARS 156
E+ + V Q GC + C +C +++T EE++ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFFQ-GCLMRCLYC-HNRDTWDTHGGKDVTVEELIKEATAYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + + + D+ G
Sbjct: 66 FMNASGGGVTASGGEAVLQAEFV--------RDWFRACHA--EGIHTCLDTNGF------ 109
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
+ G V + ++ + L +++++ LV ++ LE Y
Sbjct: 110 --VRRYGPV---IDELMDATDLVMLDLKQLNDEIHQKLVGVSNHRTLE-----FARYLAK 159
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY-------- 326
N ++ YV++ G +D A L + + KI L+P++ ++
Sbjct: 160 RN-QKTWIRYVVVPGWSDDNESAHKLGEFTNDMKNIEKIELLPYHELGKHKWTTMGEKYQ 218
Query: 327 ----LCSDQKDIVTFSECIKRSGYSS 348
++ + ++ G+
Sbjct: 219 LEGVKPPAKETMERVKNILESYGHKV 244
>gi|295100532|emb|CBK98077.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium
prausnitzii L2-6]
Length = 483
Score = 43.1 bits (100), Expect = 0.069, Method: Composition-based stats.
Identities = 33/210 (15%), Positives = 73/210 (34%), Gaps = 20/210 (9%)
Query: 102 EIETVYIPEKSRGTL----CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+ + K+R T+ C+ C+L CS+C+ + + R+L
Sbjct: 83 VYKDMAFDFKNRQTVVKALCLHVAHTCNLNCSYCFASQGRYQGD-------------RAL 129
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G ++ ++ S R+ + G GEPL NFD VKK ++ + + R
Sbjct: 130 MSFEVGKRAMDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRF 188
Query: 218 TLSTSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
T++T+G ++ + + +SL + + ++ + +
Sbjct: 189 TMTTNGMLIDDDVIDFCNKECHNVVLSLDGRKEVHDRFRKDYAGRGSYDAIVPKFQEFVK 248
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ D D ++ +
Sbjct: 249 KRGDKNYYMRGTYTHYNTDFTNDIFHMADL 278
>gi|331268523|ref|YP_004395015.1| glycerol dehydratase activator [Clostridium botulinum BKT015925]
gi|329125073|gb|AEB75018.1| glycerol dehydratase activator [Clostridium botulinum BKT015925]
Length = 313
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------L 327
I +++G N + ++ + K + +I+L+P++ + +Y
Sbjct: 229 IIIRVPVIEGFNSDEKSIRDIAEFAKTLKKVKRIDLLPYHSYGENKYQTIGRNYFLKNLK 288
Query: 328 CSDQKDIVTFSECIKRSGYSSPI 350
+ + F + ++ G I
Sbjct: 289 PPSNEKMNCFRKIVQGRGLFCSI 311
>gi|269967633|ref|ZP_06181683.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
40B]
gi|269827720|gb|EEZ82004.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
40B]
Length = 246
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 31/263 (11%), Positives = 77/263 (29%), Gaps = 47/263 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + V Q GC + C +C + +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLMRCKYC-HNRDTWDTHDGKEVTVEEIISEAKSYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + E + D+ G
Sbjct: 66 FMNASGGGVTCSGGEAMLQPEFVRDFFRAAKTEG----------IHTCLDTNGYVRKH-- 113
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
++ + ++ + + + +++ L+ ++ + L+ Y
Sbjct: 114 ---------TDVIDEVLDATDLVMLDIKHMKDEVHQDLIGVSNRRTLD-----FARYLQK 159
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------- 327
+ YV++ G D P A L + +K + K+ L+P++ ++
Sbjct: 160 IGK-KTWIRYVVVPGYTDDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYP 218
Query: 328 -----CSDQKDIVTFSECIKRSG 345
++ + + +
Sbjct: 219 LEGVNPPPKETMDEIQSILAQYN 241
>gi|212634770|ref|YP_002311295.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
piezotolerans WP3]
gi|212556254|gb|ACJ28708.1| Pyruvate formate-lyase 1 activating enzyme [Shewanella
piezotolerans WP3]
Length = 246
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 34/250 (13%), Positives = 77/250 (30%), Gaps = 48/250 (19%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
++ GC + C +C+ T + + +E++ Q++ R L G G
Sbjct: 24 ITFMQGCLMRCQYCHNRDTWDLHGGKEIKVDELMSQIISYRPFLEASGGGVTASGGEAVL 83
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
++ + K+ G+ L T+GFV + +E
Sbjct: 84 QPEFVA---------------ELFKACK----KEGI-----HTCLDTNGFVRKYTPIIDE 119
Query: 235 --IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
L + ND ++I + + ++ YV++ G
Sbjct: 120 LLDNTDLVLLDIKQINDEKHIDLTKVSNQRTLQFAEHLH-----KRNQKTWIRYVVVGGF 174
Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
D A L + +K + K+ L+P++ ++ + +
Sbjct: 175 TDDMPSAQALAEFIKPMTNVEKVELLPYHELGKHKWEAMGEEYELNQISPPTTETMEKIK 234
Query: 339 ECIKRSGYSS 348
+ G ++
Sbjct: 235 QVFIDMGINA 244
>gi|158421695|ref|YP_001522987.1| biotin synthase-related enzyme [Azorhizobium caulinodans ORS 571]
gi|158328584|dbj|BAF86069.1| biotin synthase-related enzyme [Azorhizobium caulinodans ORS 571]
Length = 326
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 48/310 (15%), Positives = 89/310 (28%), Gaps = 50/310 (16%)
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L + + P D + W + G V TV CV Q
Sbjct: 41 LAEVSFPLRPRFYDRVTADGVPY-WKIAT---LHGRDVLATTVLQE-------CVRYQSR 89
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR-KISNI 182
+ TC FC G A + Q+ + + G+ + ++
Sbjct: 90 -AKTCQFCAIGQSLEAGRTIARKTPEQLAEVAKAAVELDAVTHMVMTTGTPPGKDRGCSV 148
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+M D + D R+ E L +
Sbjct: 149 LMESTAAVKAAVDLAIQVQCEPPDDDIW-----------------FKRMHEAGADSLGMH 191
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L AV+ ++R ++P + P+ + A + ++ +L G+ D+ L +
Sbjct: 192 LEAVTPEVRARIMPGKAQVPIARYLSAFEAAVPVFGKGQV--STYILAGLGDTREAILAM 249
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLC-SDQKDIVTFSE--------CIKRSGYSSPIRTP 353
+ L ++PF P G + F + ++ +G +
Sbjct: 250 CEELLKRGVYPFVVPFVPISGTPLEGHPGPQP--AFMKSVLQPLAAMVRAAGLRAT---- 303
Query: 354 RGLDILAACG 363
DI A CG
Sbjct: 304 ---DIKAGCG 310
>gi|70607089|ref|YP_255959.1| tRNA-modifying enzyme [Sulfolobus acidocaldarius DSM 639]
gi|68567737|gb|AAY80666.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
Length = 358
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 10/133 (7%)
Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLS 277
L TSG P+I EE L +S+ A N ++ ++ E+ ++ + P S
Sbjct: 168 LVTSGVRPDILASLEEEPTQLFVSIQAP-NYKKHKIMNRPIVPNSWELFLETLKILPSFS 226
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQ 331
+ M+KG N S DA + K+++ P I + + Y
Sbjct: 227 S--PTVIRMTMIKGYNMSEEDAKDFAKLIELSQPTYIEVKSYMHVGPSTYRLTKDAMPKH 284
Query: 332 KDIVTFSECIKRS 344
+I FS+ +
Sbjct: 285 NEIREFSKILANY 297
>gi|209695413|ref|YP_002263342.1| pyruvate formate lyase-activating enzyme 1 [Aliivibrio salmonicida
LFI1238]
gi|208009365|emb|CAQ79638.1| pyruvate formate-lyase 1 activating enzyme [Aliivibrio salmonicida
LFI1238]
Length = 245
Score = 43.1 bits (100), Expect = 0.073, Method: Composition-based stats.
Identities = 26/262 (9%), Positives = 78/262 (29%), Gaps = 45/262 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + + Q GC + C +C+ T + ++ E++ + R
Sbjct: 7 HSFESCGTVDGPGIRFIIFLQ-GCLMRCMYCHNRDTWDTHEGKEVSVTELIEEAKSYRHF 65
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + + + +D
Sbjct: 66 MKASGGGITCSGGEAMLQPEFVRDFFQAAQAEGMHTCLDTNGYIRKHTD----------- 114
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
V + ++ + + + + +++ + + ++ + L+ Y
Sbjct: 115 -------VVDEVLAASDLVM---LDIKHMKDEIHHDFIGVSNRRTLD-----FARYL-HK 158
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D A L +K + K+ L+P++ ++
Sbjct: 159 IGKKTWIRYVIVPGYTDDEESAHMLGDFIKDMDNIEKVELLPYHQLGAHKWEAMGLKYPL 218
Query: 328 ----CSDQKDIVTFSECIKRSG 345
++ + + +
Sbjct: 219 DGVNPPSKETMEKMVAILSQYH 240
>gi|297579388|ref|ZP_06941316.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385]
gi|297536982|gb|EFH75815.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385]
Length = 246
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC C +C+ T R +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLFRCKYCHNRDTWDTHTGREVTVEEIIKEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G R+
Sbjct: 67 MNASGGGITCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNG---YVRKF 113
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
T + E+ ++ + + + +++ L+ ++ K L+ Y
Sbjct: 114 TP--------VIDEVLEVTDLVMLDIKQMDDEIHQDLIGVSNKRTLD-----FARYL-HQ 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D A L + +K + KI L+P++ ++
Sbjct: 160 IGQKTWLRYVVVPGYTDDEASAHQLGEFIKDMKNIEKIELLPYHKLGAHKWEAMGEEYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 220 EGVNPPSKETMDKIVAILEQYHSNV 244
>gi|294778024|ref|ZP_06743458.1| glycyl-radical enzyme activating family protein [Bacteroides
vulgatus PC510]
gi|294448082|gb|EFG16648.1| glycyl-radical enzyme activating family protein [Bacteroides
vulgatus PC510]
Length = 302
Score = 43.1 bits (100), Expect = 0.076, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPW--------------P 322
+++G+N ++ + L +P INL+P++
Sbjct: 213 FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPK 272
Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPI 350
G + ++ + + G + I
Sbjct: 273 GYKMQTPSEEVQQQCIQILTDYGLKATI 300
>gi|313672572|ref|YP_004050683.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
19672]
gi|312939328|gb|ADR18520.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
19672]
Length = 309
Score = 43.1 bits (100), Expect = 0.077, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 23/209 (11%)
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
C+L C +C G + N R D + I
Sbjct: 24 HKTCNLDCIYCEVGKTTRLTNK------------RRSFIDLDLMFKEFEQAYSHLKDHID 71
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
+ + G GEP N D I + + + +++ + + ++
Sbjct: 72 VVTITGAGEPTLNSD----LHKIIKEIKKVISHPLALLTNSTLIDNDDVQNALMDLDLIV 127
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
S+ A+S ++ + +++ + ++ A + + N +I E + +KGIND+ +
Sbjct: 128 PSVDAISLEVIKKINKPHKRLNWDNILKALKDFSHQYNG-KIFIETLFVKGINDNEEEFN 186
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCS 329
L K + I N +
Sbjct: 187 RLADYFKELKY--TKIQLNTV----FRPP 209
>gi|323704620|ref|ZP_08116198.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323536082|gb|EGB25855.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 453
Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ R L+ + ++ +V S G
Sbjct: 97 CLHVSHDCNLRCEYCFAQKGDYN-------------TGRKLMSKEVAFKAVDYLVKNSSG 143
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEE 234
R+ I G GEPL NFD VK ++ K T++T+G + +
Sbjct: 144 RRNIEIDFFG-GEPLLNFDVVKATVDYGRSLEDKFNKKFYFTITTNGTLLDDEKIKFLNK 202
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ IS+ I + + ++ + N + K D
Sbjct: 203 NMDNVVISIDGRKEIHDEIRHYASGNGSYDKIVPLAKKLVEERNGKSYFIRGTFTKKNKD 262
Query: 295 SPRDALNLIKI 305
+D +L +
Sbjct: 263 FSKDVFHLADL 273
>gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
8482]
gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
8482]
Length = 302
Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPW--------------P 322
+++G+N ++ + L +P INL+P++
Sbjct: 213 FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPK 272
Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPI 350
G + ++ + + G + I
Sbjct: 273 GYKMQTPSEEVQQQCIQILTDYGLKATI 300
>gi|222081659|ref|YP_002541024.1| Radical SAM protein [Agrobacterium radiobacter K84]
gi|221726338|gb|ACM29427.1| Radical SAM protein [Agrobacterium radiobacter K84]
Length = 357
Score = 43.1 bits (100), Expect = 0.079, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 74/256 (28%), Gaps = 35/256 (13%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG-CEDIEGMVIPS 174
C+ Q + TC FC G A + Q+ + G + P
Sbjct: 112 TCIRYQSR-TKTCQFCAIGQSLAAGRTVAHKTPAQLAEVAKAAVELDGVKHMVMTTGTPR 170
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ + + + G
Sbjct: 171 GDDRGAAVLAESARAIKAAVDLPIQAQCEPPEDDIWFQRMKDAGVDALGM---------- 220
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ ++R ++P + +E + + + + R +L G+ D
Sbjct: 221 -------HLEVVTPEIRARIMPGKAQVGIEKYMRSFKAAVEVFG--RGQVSTYILAGLGD 271
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFS----ECIKRSGYS 347
+ L + + L I ++PF P G + + + + SG
Sbjct: 272 TREAILEICEELIAIGVYPFVVPFVPISGTPLESHPAPKPEFMHSILGPLSRMLVASGLK 331
Query: 348 SPIRTPRGLDILAACG 363
+ DI A CG
Sbjct: 332 AV-------DIKAGCG 340
>gi|254880766|ref|ZP_05253476.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
4_3_47FAA]
gi|319639776|ref|ZP_07994506.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A]
gi|254833559|gb|EET13868.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
4_3_47FAA]
gi|317388593|gb|EFV69442.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A]
Length = 302
Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPW--------------P 322
+++G+N ++ + L +P INL+P++
Sbjct: 213 FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPK 272
Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPI 350
G + ++ + + G + I
Sbjct: 273 GYKMQTPSEEVQQQCIQILTDYGLKATI 300
>gi|257064441|ref|YP_003144113.1| glycyl-radical enzyme activator family protein [Slackia
heliotrinireducens DSM 20476]
gi|256792094|gb|ACV22764.1| glycyl-radical enzyme activator family protein [Slackia
heliotrinireducens DSM 20476]
Length = 311
Score = 42.7 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 50/155 (32%), Gaps = 15/155 (9%)
Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPIN 258
+ D I + G + + ++ + L ++ +++ +
Sbjct: 147 FVGELIDEAARRGISTCIDTTGYGDAEALLDLASKDSVTTVLYDLKSIDDEVHREYTGVG 206
Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIP 317
+ L L +I ++KG+ND ++ + + +NL+P
Sbjct: 207 NETILANLRLLA---ADERTRSKIVMRMPLIKGVNDDEDMIERTAELYRELGITQVNLLP 263
Query: 318 FNPWP----------GCEYLCSDQKDIVTFSECIK 342
++ E+ D+K + +E ++
Sbjct: 264 YHNLGVGKARNVGRSQREFEAPDEKRMAAIAERLQ 298
>gi|257438968|ref|ZP_05614723.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165]
gi|257198553|gb|EEU96837.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165]
Length = 487
Score = 42.7 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 72/236 (30%), Gaps = 20/236 (8%)
Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL----CVSSQVGCSLTCSFC 131
V E + + P E + K+R T+ C+ C+L CS+C
Sbjct: 61 VTEADLRQCIDDVASLKESGKLWSPDTYEDLAFDFKNRNTVVKALCLHVAHTCNLNCSYC 120
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
+ + L F + +I + G + + V GEPL
Sbjct: 121 FASQGRYQG--------------ERALMSFEVGKRAMDFLIENSGSRRNLEVDFFGGEPL 166
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAISLHAVSND 249
NFD VKK ++ + + R T++T+G ++ + + +SL
Sbjct: 167 MNFDMVKKLVAYCREQEKIHNKNFRFTMTTNGMLIDDDVIDFCNKECHNVVLSLDGRKEV 226
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ ++ + + + D D ++ +
Sbjct: 227 HDRFRKDYAGHGSYDTIVPKFQEFVKKRGDKGYYMRGTFTHYNTDFTNDIFHMADL 282
>gi|121535846|ref|ZP_01667645.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
gi|121305561|gb|EAX46504.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
Length = 457
Score = 42.7 bits (99), Expect = 0.086, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 22/209 (10%)
Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLG 159
+ + + + +LC+ C+L C +C+ TG R L +E+ Q +
Sbjct: 82 TVPSTFSDKPIVKSLCLHVAHDCNLRCRYCFAGTGDFGHDRGLMTKEVAEQAV------- 134
Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
E ++ S R+ I G GEPL N + V+ ++ + ++TL
Sbjct: 135 --------EFLIASSGPRRHCEIDFFG-GEPLLNMEVVRHTVDYVRRRAAETGKIFKLTL 185
Query: 220 STSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+T+ + I E + L +SL + + + ++ +
Sbjct: 186 TTNAVLLDDAIINYLNEHNISLVLSLDGRREVHDRMRPDALGRGSYDEVVANIKRAVASR 245
Query: 278 NARRITFEYVMLKGIN-DSPRDALNLIKI 305
N + N D D L + +
Sbjct: 246 NGQNYYVR-GTFTAYNIDFAADVLAMADL 273
>gi|117619525|ref|YP_856225.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117560932|gb|ABK37880.1| pyruvate formate-lyase activating enzyme [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 272
Score = 42.7 bits (99), Expect = 0.086, Method: Composition-based stats.
Identities = 37/288 (12%), Positives = 85/288 (29%), Gaps = 46/288 (15%)
Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGT 135
++S + + IG +ET + V Q GC + C +C+ T
Sbjct: 11 EVSATAAETSVTADASGVIGRIHSVETCGTVDGPGIRFIVFMQ-GCLMRCKYCHNRDTWD 69
Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
+ R +T E++ + R + G G I+ + + +
Sbjct: 70 TQGGREVTVPELMSDITSYRHFMNASGGGVTASGGEAMLQQNFIAELFAACKEKGIHTC- 128
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
L T+GFV + +++ + L + + +
Sbjct: 129 -----------------------LDTNGFVRHYDEQLDKVLDNTDLVLLDIKQINDDKHI 165
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---K 312
P+ L A Y + YV++ +D A L + + + K
Sbjct: 166 PLTHVSNKYTLEFA--RYLAAKGKT-MWIRYVVVPTWSDDDESAEGLGQFIAELGECVEK 222
Query: 313 INLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
+ L+P++ ++ ++ + + + +
Sbjct: 223 VELLPYHELGKHKWDVLGDTYDLNGIKPPSKETMDRVQGILAKYHNNV 270
>gi|194336098|ref|YP_002017892.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
gi|194308575|gb|ACF43275.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
Length = 311
Score = 42.7 bits (99), Expect = 0.091, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL+A S L N +V ++ + R+ E ++L GINDS +
Sbjct: 128 SLNAGSEALHNQIVRPAAGLTFRQHLEGLVAF-RHEYQGRLWIEVMLLGGINDSDEALRD 186
Query: 302 LIKILKGI-PAKINL-IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
L +LK I P ++L +P P P E + I + + +
Sbjct: 187 LAIVLKEINPDMVHLVLPTRPAPEQEVHLPSDERIERAIAILSE---VTTV 234
>gi|169832343|ref|YP_001718325.1| radical SAM domain-containing protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169639187|gb|ACA60693.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 456
Score = 42.7 bits (99), Expect = 0.092, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 23/200 (11%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C R + R L+ ++ ++ S
Sbjct: 91 CLYVSHHCNLACRYC------FARAGRPD-------TVRKLMPSGVARRAVDLLISESGA 137
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFV--PNIARVGE 233
R+ I G GEPL NF V+ ++ A G + KR T++T+G + P + R
Sbjct: 138 RRHVEIDFFG-GEPLLNFPVVRDTIRYAR-ERGEAAGKRVGFTVTTNGLLLTPEVRRFLL 195
Query: 234 EIGVMLAISLHA-VSNDLRNILVP---INRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
+ V + +SL R P + + L + + R + +R +
Sbjct: 196 KNKVNVVLSLDGRPEAHDRWRRTPGGGGSHREVLPKIREYVREWEACRGSRGYYYVRGTF 255
Query: 290 KGIN-DSPRDALNLIKILKG 308
N D D L++
Sbjct: 256 TRHNLDFAEDFRYLVEQGFH 275
>gi|253990313|ref|YP_003041669.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253781763|emb|CAQ84926.1| pyruvate formate lyase activating enzyme 1 [Photorhabdus
asymbiotica]
Length = 246
Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats.
Identities = 33/266 (12%), Positives = 80/266 (30%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV----RNLTAEEILLQVLLARS 156
E+ + V Q GC + C +C +++T EE++ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFFQ-GCLMRCLYC-HNRDTWDTHGGKDVTVEELIKEATTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + + + D+ G
Sbjct: 66 FMNASGGGVTASGGEAILQAEFV--------RDWFRACRA--EGIHTCLDTNGFVRRY-- 113
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
+ ++ ++ + L +++++ LV ++ LE Y
Sbjct: 114 ---------DPVIDELMDVTDLVMLDLKQINDEIHQKLVGVSNHRTLE-----FARYLTK 159
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY-------- 326
N ++ YV++ G +D A L + + KI L+P++ ++
Sbjct: 160 RN-QKTWIRYVVVPGWSDDDESAHRLGEFTSDMKNIEKIELLPYHELGKHKWTTMGEEYQ 218
Query: 327 ----LCSDQKDIVTFSECIKRSGYSS 348
++ + ++ G+
Sbjct: 219 LEGVKPPAKETMERVKNILESYGHKV 244
>gi|308270210|emb|CBX26822.1| hypothetical protein N47_A08510 [uncultured Desulfobacterium sp.]
Length = 424
Score = 42.7 bits (99), Expect = 0.095, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 78/245 (31%), Gaps = 35/245 (14%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C++C + L + + P + +I+
Sbjct: 34 KCNIKCNYCN----------RKYDCLNESRPGVTSAVLSPLQAVDYLKRVLIKEPRITVA 83
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ G G+P N + ++L + + + + G +P I + + I+
Sbjct: 84 GIAGPGDPFANPEETMETLRLINKQ--FPDIILCLATNGMGLLPYIDELSGLNLTHVTIT 141
Query: 243 LHAVSNDLRNILVPINRKYPL-----EMLIDACRHYPGLSNARR-----ITFEYVMLKGI 292
++A+ + + R + + + + +++ GI
Sbjct: 142 VNALDPVIGGKIYSWARDGKVLYRKEKAAEKLIERQLESIKKLKEKNITVKINSIIVPGI 201
Query: 293 NDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
ND + + K ++ + I N I P PG E+ + I +G S IR
Sbjct: 202 ND--EHIIEIAKEMRHLKVDIMNAIAMFPSPGSEF-----ETIKE-----PGNGLVSRIR 249
Query: 352 TPRGL 356
G
Sbjct: 250 EEAGK 254
>gi|307266562|ref|ZP_07548094.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918416|gb|EFN48658.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 461
Score = 42.7 bits (99), Expect = 0.095, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T L DF + +I S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGDFKG--------------SRKLMDFETGKKAIDFLIKSS 141
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
G++ + V GEPL NFD VKK + + + + T++T+ + +
Sbjct: 142 GKRRNIEVDFFGGEPLLNFDVVKKLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL N+ + ++ + ++ + + +
Sbjct: 202 ENFSNVVLSLDGRKEVNDNMRIRVDGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTSKNL 261
Query: 294 DSPRDALNLIKI 305
D D L++ +
Sbjct: 262 DFANDVLHIADL 273
>gi|46395073|gb|AAS91670.1| NifN-B [Clostridium beijerinckii]
Length = 896
Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats.
Identities = 50/306 (16%), Positives = 104/306 (33%), Gaps = 53/306 (17%)
Query: 51 QGMSD--ISQE---VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET 105
+++ +++ R L + EI +E +G +K R ++ VE +T
Sbjct: 434 DQITNVMLAKTEMTFRENLYNEYYNEETEINNEVTVIEGEKKMEARVISKEE---VEEKT 490
Query: 106 VYIPEKSRGTLCVSSQV----------GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
P C S+ C+++C++C L + + +
Sbjct: 491 KTHPCF----SCSSAHKYARMHLPIAPKCNISCNYC----------LRKFDCVNESRPGV 536
Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
+ P + ++ S + + + G G+ L NFDNV+++L + +
Sbjct: 537 TTEVLSPEEAFAKYKLVKSKMDNLKVVGIAGPGDALANFDNVRETLKLIREHDSEV---- 592
Query: 216 RITLSTSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID----- 268
LST+G + + ++++A+ + + + +
Sbjct: 593 TFCLSTNGLMLPFYAQELINLGVSHVTVTMNAIDPKITAKVYKFVDYLGVTYTGEEAAQI 652
Query: 269 ------ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPW 321
+ Y + VMLKGIND + K K + A I N++ P
Sbjct: 653 LLTNQLSGIKYLA-DRGIMVKVNIVMLKGINDH--HIEEVTKKAKELGAGITNIMQMIPV 709
Query: 322 PGCEYL 327
G +
Sbjct: 710 KGSVFE 715
>gi|210620573|ref|ZP_03292121.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
gi|210155287|gb|EEA86293.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
Length = 298
Score = 42.7 bits (99), Expect = 0.097, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 22/148 (14%)
Query: 216 RITLSTSGFVPN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
+ + T+G+V + E+ ++L H + ++ + +
Sbjct: 156 HVAIETTGYVKKETFEELARELDLLLFDVKH--YDREKHYNGTKVYNDLIVENLKW---- 209
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------ 326
+ N + ++ NDS DA L K+L + A K+ L+PF+ + +Y
Sbjct: 210 -AIDNGIEVLPRIPVIPDFNDSLEDAEGLAKLLVEVGAKKVQLLPFHQFGEKKYELLNRN 268
Query: 327 ------LCSDQKDIVTFSECIKRSGYSS 348
+++ + + G +
Sbjct: 269 YKYKNKKALYPEELEEYQKIFLDKGLNC 296
>gi|302379699|ref|ZP_07268184.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
ACS-171-V-Col3]
gi|302312606|gb|EFK94602.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
ACS-171-V-Col3]
Length = 452
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 45/292 (15%), Positives = 97/292 (33%), Gaps = 39/292 (13%)
Query: 47 IRDFQGMS--------DISQE-VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
+ F +S D+S + + L Q+ + S +
Sbjct: 21 VHVFDDISYDVLDYYKDLSADEIVEKLAQY------PEESVRDSIKEIGELEKANMLFSS 74
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+ IE E +C+ C+L C +C+ + ++
Sbjct: 75 DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ + G + ++ +V S RK + G GEPL +F+ VKK + ++ K R
Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKFRF 180
Query: 218 TLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
T++T+G + + + + +SL + N+ +N K ++++ +
Sbjct: 181 TITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVNDNMRKTLNDKGSYDLIVPKFQKLIK 240
Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ + N D D + + + + I P +Y
Sbjct: 241 GRKG-KYYYVRGTFTKKNLDFSEDVKHFKDLGFELSS----IE--PVVDSDY 285
>gi|303234218|ref|ZP_07320864.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
BVS033A4]
gi|302494759|gb|EFL54519.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
BVS033A4]
Length = 452
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 45/292 (15%), Positives = 97/292 (33%), Gaps = 39/292 (13%)
Query: 47 IRDFQGMS--------DISQE-VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
+ F +S D+S + + L Q+ + S +
Sbjct: 21 VHVFDDISYDVLDYYKDLSADEIVEKLAQY------PEESVRDSIKEIGELEKANMLFSS 74
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+ IE E +C+ C+L C +C+ + ++
Sbjct: 75 DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ + G + ++ +V S RK + G GEPL +F+ VKK + ++ K R
Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKFRF 180
Query: 218 TLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
T++T+G + + + + +SL + N+ +N K ++++ +
Sbjct: 181 TITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVNDNMRKTLNDKGSYDLIVPKFQKLIK 240
Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ + N D D + + + + I P +Y
Sbjct: 241 GRKG-KYYYVRGTFTKKNLDFSEDVKHFKDLGFELSS----IE--PVVDSDY 285
>gi|260768897|ref|ZP_05877831.1| pyruvate formate-lyase activating enzyme [Vibrio furnissii CIP
102972]
gi|260616927|gb|EEX42112.1| pyruvate formate-lyase activating enzyme [Vibrio furnissii CIP
102972]
gi|315180593|gb|ADT87507.1| pyruvate formate lyase-activating enzyme 1 [Vibrio furnissii NCTC
11218]
Length = 246
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 31/270 (11%), Positives = 80/270 (29%), Gaps = 55/270 (20%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY--------TGTQKLVRNLTAEEILLQVL 152
E+ + + Q GC C +C+ TG + ++ EEI+ +
Sbjct: 8 HSFESCGTVDGPGIRFIIFLQ-GCLFRCKYCHNRDTWDTHTGKE-----VSVEEIIAEAK 61
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
R + G G + + E + D+ G
Sbjct: 62 SYRHFMNASGGGVTCSGGESMLQPEFVRDFFRAAQAEG----------IHTCLDTNGYIR 111
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
+ ++ ++ + + + +++ L+ ++ K L+
Sbjct: 112 KYTPV-----------IDEVLDVTDLVMLDIKQMQDEIHQDLIGVSNKRTLD-----FAR 155
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL--- 327
Y + YV++ G D A L + ++ + KI L+P++ ++
Sbjct: 156 YLQKMGK-KTWIRYVVVPGYTDDEESAHLLGQFIQDMDNVEKIELLPYHKLGAHKWEAMG 214
Query: 328 ---------CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 215 ETYPLEGVNPPSKETMDKIVSILEQYHSNV 244
>gi|169824972|ref|YP_001692583.1| arylsulfatase regulator [Finegoldia magna ATCC 29328]
gi|167831777|dbj|BAG08693.1| arylsulfatase regulator [Finegoldia magna ATCC 29328]
Length = 452
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 45/292 (15%), Positives = 97/292 (33%), Gaps = 39/292 (13%)
Query: 47 IRDFQGMS--------DISQE-VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
+ F +S D+S + + L Q+ + S +
Sbjct: 21 VHVFDDISYDVLDYYKDLSADEIVEKLAQY------PEESVRDSIKEIAELEKANMLFSS 74
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
+ IE E +C+ C+L C +C+ + ++
Sbjct: 75 DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ + G + ++ +V S RK + G GEPL +F+ VKK + ++ K R
Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKFRF 180
Query: 218 TLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
T++T+G + + + + +SL + N+ +N K ++++ +
Sbjct: 181 TITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVNDNMRKTLNDKGSYDLIVPKFQKLIK 240
Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ + N D D + + + + I P +Y
Sbjct: 241 GRKG-KYYYVRGTFTKKNLDFSEDVKHFKDLGFELSS----IE--PVVDSDY 285
>gi|153810179|ref|ZP_01962847.1| hypothetical protein RUMOBE_00560 [Ruminococcus obeum ATCC 29174]
gi|149833358|gb|EDM88439.1| hypothetical protein RUMOBE_00560 [Ruminococcus obeum ATCC 29174]
Length = 466
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 40/246 (16%), Positives = 76/246 (30%), Gaps = 19/246 (7%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L + + +S K R I + E + LC+
Sbjct: 60 DKLKDQY---PEADIRTSVSECEKLKEQGMLFTRDIYENIIDEFTENRQTVVKALCLHIA 116
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C+L C +C+ E R L F + +I + G + +
Sbjct: 117 HDCNLACRYCFA---------EEGEY-----HGRRALMSFEVGKKALDFLIANSGSRKNL 162
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239
V GEPL N+ VK ++ + L K R TL+T+G + + + +
Sbjct: 163 EVDFFGGEPLMNWQVVKDLVAYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFCNKEMGNV 222
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+S+ + +++I + + N + D +D
Sbjct: 223 VLSVDGRKEVHDYMRPFRKGAGSYDLIIPKFQKFAESRNQDKYYVRGTFTHHNLDFSKDV 282
Query: 300 LNLIKI 305
L+L +
Sbjct: 283 LHLADL 288
>gi|20094020|ref|NP_613867.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
gi|19886991|gb|AAM01797.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
Length = 282
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 29/243 (11%), Positives = 86/243 (35%), Gaps = 27/243 (11%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C FC +G + E + R++ + ++ +
Sbjct: 29 RCNIHCRFCESGLE--------HEGVRVDYPGRAVRTITGDEARTALKRVKEHCGRVDVV 80
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ G G+PL N+++VK++ + +++ + +KR ++ + ++P++ E+ + I+
Sbjct: 81 GIAGPGDPLANWEDVKETFDVVAET--VPEAKRCLSTNGV-WLPDLIDEVTELVHSVTIT 137
Query: 243 LHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYVMLK 290
++A+ ++ + + + +V++
Sbjct: 138 VNALDPEIAADIYDRALTPEGEVLTGKEAARWIVERQEGAMDALKKERYILKKVNFVLVP 197
Query: 291 GINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
G+N + + + +N+IP P + ++ + Y +
Sbjct: 198 GVN--EDEVERVAERAADAGFHAMNVIPLIPGGDMKDHRPPTCRELS-RARDRAEKYITV 254
Query: 350 IRT 352
+R
Sbjct: 255 MRR 257
>gi|332653319|ref|ZP_08419064.1| radical SAM domain protein [Ruminococcaceae bacterium D16]
gi|332518465|gb|EGJ48068.1| radical SAM domain protein [Ruminococcaceae bacterium D16]
Length = 471
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 80/252 (31%), Gaps = 22/252 (8%)
Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
QE++ L+Q + + + E++ + L + L
Sbjct: 44 PQELKDQLSQ-YDPQELDELWEELRGLQEQGLLFSSDDYIDAD---KAMALPRQAVVKAL 99
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ T R ++ I+ +V S
Sbjct: 100 CLHVSHDCNLRCKYCFASTGDFG-------------TGRKIMDFETAKRAIDWVVAKSGK 146
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
R+ + G GEPL D VKK++ A R T++T+G +
Sbjct: 147 RRNIEVDFFG-GEPLMAMDTVKKTVEYARSLEKEHDKVFRFTITTNGVLLNDENIEYINR 205
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +SL ++ +N K E+++ + + + N
Sbjct: 206 EMSNVVLSLDGRPGVNDHMRPTVNGKGSYEVIVPKFQKLVAGR-GTKDYYARGTFTRENL 264
Query: 294 DSPRDALNLIKI 305
D D +L +
Sbjct: 265 DFGEDVKHLASL 276
>gi|258621387|ref|ZP_05716421.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573]
gi|258626814|ref|ZP_05721621.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603]
gi|262171168|ref|ZP_06038846.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451]
gi|258580861|gb|EEW05803.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603]
gi|258586775|gb|EEW11490.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573]
gi|261892244|gb|EEY38230.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451]
Length = 246
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 84/265 (31%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC C +C+ T R +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLFRCKYCHNRDTWDTHTGREVTVEEIIKEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G R+
Sbjct: 67 MNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNG---YIRKF 113
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
T + E+ ++ + + +++++ L+ ++ K L+ Y
Sbjct: 114 TP--------VIDEVLEVTDLVMLDIKQMNDEIHQDLIGVSNKRTLD-----FARYL-HQ 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D A L + +K + KI L+P++ ++
Sbjct: 160 IGQKTWLRYVVVPGYTDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 220 EGVNPPSKETMDKIVAILEQYHSNV 244
>gi|154502869|ref|ZP_02039929.1| hypothetical protein RUMGNA_00689 [Ruminococcus gnavus ATCC 29149]
gi|153796408|gb|EDN78828.1| hypothetical protein RUMGNA_00689 [Ruminococcus gnavus ATCC 29149]
Length = 319
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 34/218 (15%)
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+ CS C +C EI LLA + + + G++ S
Sbjct: 53 TIINGKSGRCSENCKYCA------QSACYHTEIEEYPLLAVEKIKEQAKYNEERGVLRYS 106
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
IV G ++V +S+ +I + SG + N + +
Sbjct: 107 -------IVTSGKALNDTEVEHVCESVREIHKE-------SKIKVCVSGGLLNETQFRKL 152
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM--LKGI 292
+ +H R + + E I A R A + E + G+
Sbjct: 153 KQAGVT-RVHNNLETSRQNFPNVCTTHTYEDKIAAIRA------AWKAGIEVCSGGIMGL 205
Query: 293 NDSPRDALNLIKILKGIPAK---INLIPFNPWPGCEYL 327
++ D ++L ++ + K +NL NP PG Y
Sbjct: 206 GETVEDRIDLALEVRKLGVKSMPVNL--LNPIPGTPYE 241
>gi|222102846|ref|YP_002539885.1| Biotin synthase-related enzyme [Agrobacterium vitis S4]
gi|221739447|gb|ACM40180.1| Biotin synthase-related enzyme [Agrobacterium vitis S4]
Length = 323
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 76/256 (29%), Gaps = 35/256 (13%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
C+ Q + TC FC G A + Q+ + G + +
Sbjct: 78 TCIRYQSR-TKTCQFCAIGQSLAAGRTVAHKTPEQLAEVAKAAVELDGVKHMVMTTGTPK 136
Query: 176 GRKISNIVMMGMGEPLCNFDNV-KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
G V+ + N+ ++ + + + G
Sbjct: 137 GDDRGAAVLAESARAIKAAVNIPIQAQCEPPEDDIWFSRMKDAGVDALGM---------- 186
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ ++R ++P + +E + + + + R ML G+ D
Sbjct: 187 -------HLEVVTPEIRARIMPGKAQVGIEKYMASFKAAVEVFG--RGQVSTYMLAGLGD 237
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFS----ECIKRSGYS 347
+ L++ + L I ++PF P G + + + + SG
Sbjct: 238 TREAILDICERLVAIGVYPFVVPFVPISGTPLESHPAPKPDFMHSILGPLSKMLVESGLK 297
Query: 348 SPIRTPRGLDILAACG 363
+ DI A CG
Sbjct: 298 AV-------DIKAGCG 306
>gi|113867935|ref|YP_726424.1| biotin synthase-related enzyme [Ralstonia eutropha H16]
gi|113526711|emb|CAJ93056.1| biotin synthase-related enzyme [Ralstonia eutropha H16]
Length = 367
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 40/256 (15%), Positives = 78/256 (30%), Gaps = 35/256 (13%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 115 TCIRYESR-KKTCKFCSIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVRHMVLTTGTPP 173
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D + + T G
Sbjct: 174 TPDRGAAILCESAFAIKAAVDLPIQAQCEPPDDDRWFERMKAAGIDTLGM---------- 223
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ LR ++P P ++A + + R +L G+ D
Sbjct: 224 -------HLEVVTPALRERIMPGKAGVPPSRYMEAFKAAVAVFG--RAQVSTYILAGLGD 274
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE----CIKRSGYS 347
+ L++ + L + ++PF P G + + + + +G
Sbjct: 275 TAEAILSISRELIELGVYPFVVPFVPISGTPLEDHPAPSPAFMQSILQPLGAMLSAAG-- 332
Query: 348 SPIRTPRGLDILAACG 363
+R+ DI A CG
Sbjct: 333 --MRSS---DIKAGCG 343
>gi|224012289|ref|XP_002294797.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|224013668|ref|XP_002296498.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
gi|220968850|gb|EED87194.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
gi|220969236|gb|EED87577.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 247
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 17/208 (8%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GCS C +C N A+ I+ + + D + ++ + +
Sbjct: 25 GCSKRCIYCS--------NPDAQCIVDPLKFPEVAISDEEVIDVLKRYELFLSPNS-GGV 75
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
G G+PL D V ++ + +G + + T+G+ +
Sbjct: 76 TFSG-GDPLLQPDFVN-AVFEKAKDIGSGLT---TCIDTAGYGSPKIWDKCLPNTDYVML 130
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
+ + K+ E D RH +++ +V+LK + D+ + L
Sbjct: 131 CIKGMDLKLASFISGVSKFQNECARDFARHIRDHYKNIKLSIRWVLLKDMTDTDEELEAL 190
Query: 303 IKILKGI-PA--KINLIPFNPWPGCEYL 327
K + P + ++P++ +Y
Sbjct: 191 AAFAKELSPVFTHVEVLPYHSLGVDKYR 218
>gi|188025792|ref|ZP_02959835.2| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827]
gi|188020518|gb|EDU58558.1| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827]
Length = 273
Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 40/273 (14%), Positives = 86/273 (31%), Gaps = 61/273 (22%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY--------TGTQKLVRNLTAEEILLQVL 152
E+ + V Q GC + C +C+ TG +T EE++ + +
Sbjct: 35 HSFESCGTVDGPGIRFIVFFQ-GCLMRCLYCHNRDTWDTHTGKM-----VTVEELMKEAV 88
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
R + G G + + ++ +
Sbjct: 89 TYRHFMNATGGGVTASGGEAILQAEFVRD---------------WFRACKAQNI------ 127
Query: 213 SKRRITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
L T+GFV + E+ ++ + L +++D+ LV ++ LE
Sbjct: 128 ---HTCLDTNGFVRRYDPVIDELMEVTDLVMLDLKQLNDDIHQTLVGVSNHRTLE----- 179
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY- 326
Y N ++ YV++ G +D L + K + KI L+P++ ++
Sbjct: 180 FARYLAKRN-QKTWVRYVVVPGWSDDDHSVHLLGEFTKDMKNIEKIELLPYHELGKHKWE 238
Query: 327 -----------LCSDQKDIVTFSECIKRSGYSS 348
++ + ++ G+
Sbjct: 239 TMGEEYKLDGVKPPSKEIMERVKSILESYGHKV 271
>gi|218283069|ref|ZP_03489164.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989]
gi|218216138|gb|EEC89676.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989]
Length = 464
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L CS+C+ K + R+L+ G ++ +V S
Sbjct: 100 CLHIAHTCNLNCSYCFASQGKYHGD-------------RALMSFETGKRALDFLVENSGT 146
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEE 234
R+ + G GEPL NFD VK+ ++ A + R TL+T+G ++ +
Sbjct: 147 RRNLEVDFFG-GEPLMNFDVVKQLVAYARSIEKEAGKNFRFTLTTNGMLIDDDVIEFANK 205
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +SL V + K + ++ + + D
Sbjct: 206 EMSNVVLSLDGRKEVHDRYRVDYSGKGSFDTIVPKFQKLVKAREGKNYYMRGTFTHANPD 265
Query: 295 SPRDALNLIKI 305
+D ++ +
Sbjct: 266 FLKDVQQMLDL 276
>gi|262191309|ref|ZP_06049502.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT
5369-93]
gi|262032805|gb|EEY51350.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT
5369-93]
Length = 246
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC C +C+ T R +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLFRCKYCHNRDTWDTHTGREVTVEEIIKEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G R+
Sbjct: 67 MNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNG---YVRKF 113
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
T + E+ ++ + + + +++ L+ ++ K L+ Y
Sbjct: 114 TP--------VIDEVLEVTDLVMLDIKQMDDEIHQDLIGVSNKRTLD-----FARYL-HQ 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D A L + +K + KI L+P++ ++
Sbjct: 160 IGQKTWLRYVVVPGYTDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 220 EGVNPPSKETMDKIVAILEQYHSNV 244
>gi|303247479|ref|ZP_07333751.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
fructosovorans JJ]
gi|302491175|gb|EFL51067.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
fructosovorans JJ]
Length = 425
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 76/237 (32%), Gaps = 32/237 (13%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C+FC + + + + P + +I+
Sbjct: 31 KCNIMCNFCN----------RKYDCVSESRPGVTSAVLSPEQAVAYMEKVLEKEPRITVA 80
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240
+ G G+P+ N + ++ + + + F + LST+G A + E +
Sbjct: 81 GIAGPGDPMANPEAIET-IRLLKEK----FPQMLFCLSTNGLALPARAAELAELGVSHVT 135
Query: 241 ISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPG---------LSNARRITFEYVMLK 290
++++AV + + R + DA R + +++
Sbjct: 136 VTVNAVDPKIGAKIYAWARDGKVIHRGEDAARLLLERQLEGIKILKEKGIIVKSNTIVIP 195
Query: 291 GINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
G+ND + L ++ I N++P P + + ++G
Sbjct: 196 GVNDQHVLEVSRKLSELGVDIQ---NIMPLFPVAETPFAEVPAPTAEMIKDLRAKAG 249
>gi|291280473|ref|YP_003497308.1| pyruvate formate-lyase activating enzyme [Deferribacter
desulfuricans SSM1]
gi|290755175|dbj|BAI81552.1| pyruvate formate-lyase activating enzyme [Deferribacter
desulfuricans SSM1]
Length = 298
Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 41/290 (14%), Positives = 91/290 (31%), Gaps = 52/290 (17%)
Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL-------------TCSFCYTGTQ 136
LR ++ +SR CV+ + C C+ C T
Sbjct: 30 LRCMWCHNPESQKMTPQMSFFQSRCIRCVTCETVCPEKAIKIADTLEVHDNCTLCGT--- 86
Query: 137 KLVRNLTAE--EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
V A+ EI+ + A ++ E + G GEP
Sbjct: 87 -CVDECPADALEIIGYYIAAEEVIESVCKDELFFDSSKG-------GVTFSG-GEPFAQP 137
Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254
+ +++ L ++ + + ++ TSG+ + + + +D ++
Sbjct: 138 EFLRELLKLSKE------KRLNTSVDTSGYTDFANIEACNQYIDTYLYDIKMMDDDKHKK 191
Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-- 312
+ + I ++ G+ND + + +K + +
Sbjct: 192 YTGVSNRLILENLKKLDEIAAD-----IRVRIPLIPGVNDDVEEIDKIYDFIKDLKSVKG 246
Query: 313 INLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYSSPI 350
++L+P++ +YL D+ I F E +++G+S I
Sbjct: 247 VDLLPYHNIMIDKYLRLGMDVLVGDIPEIDKNKINYFKEFFEKNGFSVLI 296
>gi|290473883|ref|YP_003466757.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii
SS-2004]
gi|289173190|emb|CBJ79963.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii
SS-2004]
Length = 246
Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 38/262 (14%), Positives = 78/262 (29%), Gaps = 39/262 (14%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
E+ + V Q GC + C +C N + L +
Sbjct: 8 HSFESCGTVDGPGIRFIVFFQ-GCLMRCLYC-HNRDTW--NTHGGTTVTVEELIKEATTY 63
Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
G V S G I + C+ +N + D+ G I
Sbjct: 64 RHFMNASGGGVTASGGEAILQAEFVRDWFRACHAEN----IHTCLDTNGFVRRYDLI--- 116
Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
+ ++ + L + +++ L+ ++ LE HY N +
Sbjct: 117 --------IDELLDDTDLVMLDLKQLDDEIHQKLIGVSNHRTLE-----FAHYLAKLN-Q 162
Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------ 326
+ YV++ G +D + L + K + KI L+P++ ++
Sbjct: 163 KTWIRYVVVPGWSDDDKSIHMLGEFTKDMKNIEKIELLPYHELGKHKWIAMGEEYKLEGV 222
Query: 327 LCSDQKDIVTFSECIKRSGYSS 348
++ + E + G+
Sbjct: 223 KPPSKETMERVKEILVSYGHHV 244
>gi|225574938|ref|ZP_03783548.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM
10507]
gi|225037785|gb|EEG48031.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM
10507]
Length = 374
Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 41/298 (13%), Positives = 89/298 (29%), Gaps = 48/298 (16%)
Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV-GCSLTCSFCYT 133
+ + A GG E P + ++C + C+ C++
Sbjct: 109 LFSRQKCRYEKSHCRRCLTACKRGGVKETNHPESPLEFDRSVCENCDTFDCANACAYEAA 168
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
R++ EI+ + R + G G M E L
Sbjct: 169 RISGKYRSV--GEIMRILRRDREYWDEKGGPGFSGGEP-------------MVQKEFLYE 213
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
+ + G++ ++ T+ V + + A + ++
Sbjct: 214 -------VLLKCKEEGMN-----TSIETTASVDTETFLKIMELIDFAFIDVKHMDSQKHR 261
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAK 312
+ I+A S R+ +++G ND+ +A I +K + +
Sbjct: 262 EKTGIGNERILSNIEAL---VRNSWKGRLVLRMPVIEGYNDTLENAEATIAFMKRLGLFE 318
Query: 313 INLIPFN------------PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
INL+PF+ +P EY ++ + + + + + G D+
Sbjct: 319 INLLPFHRLGTSKWEQLGMEYPYAEYSPTEDEVMERLQDFYLDHRIACYV----GDDV 372
>gi|325264807|ref|ZP_08131536.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
sp. D5]
gi|324030099|gb|EGB91385.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
sp. D5]
Length = 315
Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 41/295 (13%), Positives = 88/295 (29%), Gaps = 57/295 (19%)
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS--QVGCSLTCS 129
V K ++ P + P T CV+ Q C C
Sbjct: 54 PSTCVHCYRCVSFCTKGAVKLPDKIGDN---------PVFDHDT-CVTCENQDVCEHACY 103
Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
+K+ + +T +E++ +L + G I + G GE
Sbjct: 104 EGA--IEKVGKPMTVDEVMDVILHDEPFFSNGGG------------------ITVSG-GE 142
Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
PL + + +++ S ++ + T G+V LA+ +
Sbjct: 143 PLMHPEFLEELFSECQENYI------HTAIETCGYVAWDKFEPVLRYTDLALYDVKHMDP 196
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
+ + + +D R +N + ++ G ND+ + + K I
Sbjct: 197 AAHKELTGVSNELI---LDNLRRIMDETNTE-VIIRIPVIPGANDTNENMDATARFAKEI 252
Query: 310 PAK-INLIPFNPWPGCEY-------------LCSDQKDIVTFSECIKRSGYSSPI 350
A+ I+++P++ +Y + + + + G I
Sbjct: 253 GAREIHILPYHRMGMGKYTGLGREYPLGEDVESPSDERMEVIRDIFRSYGLICKI 307
>gi|15641871|ref|NP_231503.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121587313|ref|ZP_01677085.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
2740-80]
gi|121727114|ref|ZP_01680288.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52]
gi|147674120|ref|YP_001217403.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O395]
gi|153213085|ref|ZP_01948623.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587]
gi|153818851|ref|ZP_01971518.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC
8457]
gi|153823101|ref|ZP_01975768.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33]
gi|153825235|ref|ZP_01977902.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2]
gi|153830545|ref|ZP_01983212.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39]
gi|183179507|ref|ZP_02957718.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3]
gi|227081998|ref|YP_002810549.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2]
gi|229508034|ref|ZP_04397539.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX
330286]
gi|229511727|ref|ZP_04401206.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33]
gi|229515249|ref|ZP_04404709.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21]
gi|229518865|ref|ZP_04408308.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9]
gi|229520329|ref|ZP_04409755.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM
11079-80]
gi|229523888|ref|ZP_04413293.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv.
albensis VL426]
gi|229529108|ref|ZP_04418498.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)]
gi|229607581|ref|YP_002878229.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae
MJ-1236]
gi|254226038|ref|ZP_04919637.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51]
gi|254286774|ref|ZP_04961728.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
AM-19226]
gi|254848956|ref|ZP_05238306.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10]
gi|255745371|ref|ZP_05419320.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101]
gi|262153526|ref|ZP_06028655.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE
91/1]
gi|262167426|ref|ZP_06035133.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27]
gi|298498092|ref|ZP_07007899.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK
757]
gi|9656400|gb|AAF95017.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121548473|gb|EAX58531.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
2740-80]
gi|121630492|gb|EAX62884.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52]
gi|124116132|gb|EAY34952.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587]
gi|125621421|gb|EAZ49756.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51]
gi|126510579|gb|EAZ73173.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC
8457]
gi|126519392|gb|EAZ76615.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33]
gi|146316003|gb|ABQ20542.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395]
gi|148873975|gb|EDL72110.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39]
gi|149741214|gb|EDM55265.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2]
gi|150423201|gb|EDN15148.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
AM-19226]
gi|183012918|gb|EDT88218.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3]
gi|227009886|gb|ACP06098.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2]
gi|227013767|gb|ACP09977.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395]
gi|229332882|gb|EEN98368.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)]
gi|229337469|gb|EEO02486.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv.
albensis VL426]
gi|229342695|gb|EEO07687.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM
11079-80]
gi|229343554|gb|EEO08529.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9]
gi|229347954|gb|EEO12913.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21]
gi|229351692|gb|EEO16633.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33]
gi|229355539|gb|EEO20460.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX
330286]
gi|229370236|gb|ACQ60659.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae MJ-1236]
gi|254844661|gb|EET23075.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10]
gi|255737201|gb|EET92597.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101]
gi|262024123|gb|EEY42817.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27]
gi|262030653|gb|EEY49288.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE
91/1]
gi|297542425|gb|EFH78475.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK
757]
gi|327484419|gb|AEA78826.1| Pyruvate formate-lyase activating enzyme [Vibrio cholerae
LMA3894-4]
Length = 246
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC C +C+ T R +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLFRCKYCHNRDTWDTHTGREVTVEEIIKEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G R+
Sbjct: 67 MNASGGGITCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNG---YVRKF 113
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
T + E+ ++ + + + +++ L+ ++ K L+ Y
Sbjct: 114 TP--------VIDEVLEVTDLVMLDIKQMDDEIHQDLIGVSNKRTLD-----FARYL-HQ 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D A L + +K + KI L+P++ ++
Sbjct: 160 IGQKTWLRYVVVPGYTDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 220 EGVNPPSKETMDKIVAILEQYHSNV 244
>gi|261210513|ref|ZP_05924806.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341]
gi|260840298|gb|EEX66869.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341]
Length = 246
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + V Q GC C +C+ T R +T EEI+ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFLQ-GCLFRCKYCHNRDTWDTHTGREVTVEEIIKEAKSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + D+ G R+
Sbjct: 67 MNASGGGITCSGGEAMLQPEFVRDFFRAAKAEG----------IHTCLDTNG---YIRKF 113
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
T + E+ ++ + + + +++ L+ ++ K L+ Y
Sbjct: 114 TP--------VIDEVLEVTDLVMLDIKQMDDEIHQDLIGVSNKRTLD-----FARYL-HQ 159
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL-------- 327
++ YV++ G D A L + +K + KI L+P++ ++
Sbjct: 160 IGQKTWLRYVVVPGYTDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPL 219
Query: 328 ----CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 220 EGVNPPSKETMDKIVAILEQYHSNV 244
>gi|222152350|ref|YP_002561525.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
0140J]
gi|222113161|emb|CAR40596.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
uberis 0140J]
Length = 257
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 39/247 (15%)
Query: 122 VGCSLTCSFCY---TGT----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
GC L C +C + + L + E + + ++ + D
Sbjct: 28 KGCPLRCPWCANPESQKKAPEEMLTADCKGHETVGEQKTVSEVMEEVLKDRDFYEESGGG 87
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
V + GE + K++ + + GL + I + + + +
Sbjct: 88 --------VTLSGGEIFAQY-PFAKAILKEAKANGLHTA---IETTAYAKPEHFKDLIQY 135
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ + H + LR+ V + I + S + I ++ ND
Sbjct: 136 VDFIYTDLKH--YDSLRHRQVTGVTNNLIVDNI-----HYAFSQGKEIVLRIPVIPDFND 188
Query: 295 SPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL------------CSDQKDIVTFSECI 341
S DA ++ + K+ L+PF+ + +Y +D+ + +
Sbjct: 189 SLEDAQAFSQLFNQLDIDKVQLLPFHQFGENKYKLLNRDYAMADVPAYHPEDLEEYRQVF 248
Query: 342 KRSGYSS 348
Sbjct: 249 VNHHIKC 255
>gi|284162142|ref|YP_003400765.1| lysine 2,3-aminomutase YodO family protein [Archaeoglobus profundus
DSM 5631]
gi|284012139|gb|ADB58092.1| lysine 2,3-aminomutase YodO family protein [Archaeoglobus profundus
DSM 5631]
Length = 368
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 49/322 (15%), Positives = 105/322 (32%), Gaps = 53/322 (16%)
Query: 44 VRGIRDFQGMS---DISQEVRHLLNQHFSIIY-------PEIVDEKISCDGTRKWLLRFP 93
R +R + +I Q+V L + I ++D S D ++ + P
Sbjct: 8 KRNVRTVDELKEYVNIPQDVEEKLRKVVEIHPMNVTRYYLSLIDWNDSNDPIKRMAIPSP 67
Query: 94 ARCI---------GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
G + + K T V + C++ C +C+ +K + LT
Sbjct: 68 DELSCLEGDYDTSGEHENTKMRGLQHKYSETALVLATNRCAVYCRYCF---RKRMVGLTR 124
Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
+E++ ++ A + + +++N+++ G G+P + + K
Sbjct: 125 DEVIRRLDRAVKYIEEH---------------EEVTNVLISG-GDPFVLDNKIIKRFLNK 168
Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
+ R S + + + A + + + K E
Sbjct: 169 LVEIPHLDFIRF----GSRVPVTFPMRLNDDDLPEILGEFAELKRIYVVTHYNHPKEFTE 224
Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
A + N ++ + V+LKG+ND P L ++ L+ + P
Sbjct: 225 ESTGAIKRLLD--NGIVVSNQAVLLKGVNDDPYTLAELHRL---------LVRYGIVPYY 273
Query: 325 EYLCSDQKDIVTFSECIKRSGY 346
+ C K + + + GY
Sbjct: 274 VFQCRPVKRVKGIFQVPLKEGY 295
>gi|240137021|ref|YP_002961490.1| Radical SAM domain protein [Methylobacterium extorquens AM1]
gi|240006987|gb|ACS38213.1| Radical SAM domain protein [Methylobacterium extorquens AM1]
Length = 373
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 41/252 (16%), Positives = 79/252 (31%), Gaps = 27/252 (10%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P+
Sbjct: 127 TCIRYASR-TKTCQFCSIGQSLAAGRTVARKTPEQLAEVARAAVLLDGVKHMVMTTGTPN 185
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ D + + G
Sbjct: 186 ATDRGAAVLCESAFAVKAAVDLPIQAQCEPPDDDRWFERMKASGIDALGM---------- 235
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ ++R ++P PLE +A + R +L G+ D
Sbjct: 236 -------HLEAVTPEVRTRIMPGKASVPLERYYEAFEA--AVPVFGRGQVSTYILAGLGD 286
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
+P L + + L G+ ++PF P G + + + + +R
Sbjct: 287 APEAILEMAERLVGMGVYPFVVPFVPISGTPLESHPAPGPDFMHAILKPLADMLAGADLR 346
Query: 352 TPRGLDILAACG 363
+ DI A CG
Sbjct: 347 ST---DIKAGCG 355
>gi|261494073|ref|ZP_05990576.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496086|ref|ZP_05992496.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261308336|gb|EEY09629.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310239|gb|EEY11439.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 246
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 43/268 (16%), Positives = 95/268 (35%), Gaps = 51/268 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + + Q GC + C +C+ T + +T EE++ +V +
Sbjct: 8 HSFESCGTVDGPGIRFILFLQ-GCLMRCKYCHNRDTWDLDGGKEITVEELMKEVTTYKHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + ++ G++
Sbjct: 67 MKATGGGVTASGGEAVLQMEFVRD---------------WFRACKA----EGIN-----T 102
Query: 218 TLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
L T+GFV + + V +E+ ++ + L +++++ LV ++ K L+ Y
Sbjct: 103 CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLD-----FARYL 157
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFN-----PWPGCEYL 327
N YV++ G D A L + ++G+ K+ L+P++ W Y
Sbjct: 158 HKLNK-PTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYK 216
Query: 328 -------CSDQKDIVTFSECIKRSGYSS 348
++D+ + I+ G++
Sbjct: 217 YELEGVMPPSKEDLERIQKIIESYGHTV 244
>gi|307130799|ref|YP_003882815.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937]
gi|306528328|gb|ADM98258.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937]
Length = 246
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 80/247 (32%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T EE++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G++ L T+GFV + ++
Sbjct: 88 VRD---------------WFRAC----HEQGIN-----TCLDTNGFVRRYDPVIDELLDV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ L+ Y N +R YV++ G +D
Sbjct: 124 TDLVMLDLKQLNDEVHQNLVGVSNHRTLD-----FARYLAKRN-QRTWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + K + KI L+P++ ++ + +
Sbjct: 178 DASAHQLGEFTKDMHNIEKIELLPYHELGKHKWTAMGEEYKLDGVKPPKADTMDRIKSIL 237
Query: 342 KRSGYSS 348
G+
Sbjct: 238 TSYGHKV 244
>gi|297544500|ref|YP_003676802.1| Radical SAM domain-containing protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842275|gb|ADH60791.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 461
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T L DF + +I S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGDFKG--------------SRKLMDFETGKKAIDFLIKSS 141
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
G++ + V GEPL NF+ VK+ + + + T++T+ + +
Sbjct: 142 GKRQNIEVDFFGGEPLLNFEVVKQLVEYGKQKAKENKKTIKFTITTNAVLLDDEKIKYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL ++ V +N + ++ + + +
Sbjct: 202 ENFSNVVLSLDGRKEVNDDMRVRVNGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTAKNL 261
Query: 294 DSPRDALNLIKI 305
D D L++ +
Sbjct: 262 DFANDVLHIADL 273
>gi|15921545|ref|NP_377214.1| tRNA-modifying enzyme [Sulfolobus tokodaii str. 7]
gi|15622331|dbj|BAB66323.1| 358aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 358
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 19/173 (10%)
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT--LSTSGFVPNIARVGEEIGV 237
++ + GEP +D + + + KR +T L TSG P+I EE
Sbjct: 136 KHVAISLTGEPTL-YDRLGELIKEYH--------KRGLTTFLVTSGVRPDILASLEEEPT 186
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
L +SL A + ++ +++ P S+ M+KG N S
Sbjct: 187 QLFVSLQAPNEFKHKLINRPIVANSWNLVMKTLEILPSFSS--PTVIRMTMIKGFNMSDE 244
Query: 298 DALNLIKILKG-IPAKINLIPFNPWPGCEYLCSDQK-----DIVTFSECIKRS 344
DA ++++ P I + + Y S +I F++ +
Sbjct: 245 DAREFARLMEIAQPTYIEVKAYMHVGPSTYRLSKDAMPRHFEIKEFAKKLAEY 297
>gi|251791924|ref|YP_003006644.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
aphrophilus NJ8700]
gi|247533311|gb|ACS96557.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
aphrophilus NJ8700]
Length = 246
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 87/265 (32%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + + Q GC + C +C+ T + +T EE++ +V+ R
Sbjct: 8 HSYESCGTVDGPGIRFILFLQ-GCLMRCKYCHNRDTWDLHGGKEVTVEELMKEVVSYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + E + + +
Sbjct: 67 MNASGGGVTASGGEAILQAEFVRDWFRACKKEGISTCLDTNGFVRHYDH----------- 115
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
+ ++ ++ + L +++++ IL+ + K LE Y
Sbjct: 116 ----------VIDELMDVTDLVLLDLKELNDEVHQILIGVPNKRTLE-----FAKYLQKR 160
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEY--------- 326
N +R+ YV++ G DS D L K ++G+ K+ L+P++ ++
Sbjct: 161 N-QRVWVRYVVVPGYTDSDNDIHLLGKFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYEL 219
Query: 327 ---LCSDQKDIVTFSECIKRSGYSS 348
++ + ++ G+
Sbjct: 220 EDVKPPTKESLEHIKTILESYGHVV 244
>gi|291459250|ref|ZP_06598640.1| radical SAM domain protein [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291418504|gb|EFE92223.1| radical SAM domain protein [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 461
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 18/191 (9%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L CS+C+ + L+ G ++ ++ S
Sbjct: 100 CLLVSHRCNLNCSYCFASQGSF-------------CGKQGLMSFETGKRALDFLIENSGS 146
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
R+ + G GEPL NF+ +K +S A R TL+T+G +
Sbjct: 147 RRNLEVDFFG-GEPLVNFEVCRKLVSYARSIEKEHGKNFRFTLTTNGVSVTDEVIEWANR 205
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +SL V + E ++ R + + R + N
Sbjct: 206 ECYNVVLSLDGRREVNDRFRVDSGGRGSYERIVPNFRKFVK-ARGDRGYYMRGTFTHYNT 264
Query: 294 DSPRDALNLIK 304
D D ++
Sbjct: 265 DFTEDIFHMAD 275
>gi|126700364|ref|YP_001089261.1| putative radical SAM family protein [Clostridium difficile 630]
gi|115251801|emb|CAJ69636.1| putative radical SAM-family protein [Clostridium difficile]
Length = 459
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 66/209 (31%), Gaps = 17/209 (8%)
Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
+ E LC++ C+L C +C+ L F
Sbjct: 84 PSFVHREPVVKALCLNVAHDCNLKCKYCFAAQGDFGG--------------EKELMSFEV 129
Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRR-ITLST 221
+ +I + G + + + GEPL NF+ VK+ + + + R IT +
Sbjct: 130 GKAAIDYLIANSGSRKNLEIDFFGGEPLMNFEVVKQLVDYGRSVEKDYNKNIRFTITTNG 189
Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
I E + +SL N+ +N K ++ + + + +
Sbjct: 190 VLLNDEIIDYINENMHNVVLSLDGRKEVNDNMRPTLNDKGSYDITLPRFKKLVEKRSKDK 249
Query: 282 ITFEYVMLKGIN-DSPRDALNLIKILKGI 309
+ N D +D ++ + +
Sbjct: 250 YYYIRGTFTRDNLDFSKDVMHFADLGFKL 278
>gi|116250431|ref|YP_766269.1| hypothetical protein RL0659 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255079|emb|CAK06153.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 372
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 74/256 (28%), Gaps = 35/256 (13%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
C+ Q + TC FC G A + Q+ + G + +
Sbjct: 127 TCIRYQSR-TKTCQFCAIGQSLAAGRTIAHKTPEQLAEVAKAAVELDGVKHMVMTTGTPK 185
Query: 176 GRKISNIVMMGMGEPLCNFDNV-KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
G ++ + N+ ++ + + + G
Sbjct: 186 GDDRGAAILADSARAIKAAVNIPIQAQCEPPEDDIWFTRMKEAGVDALGM---------- 235
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ ++R ++P + + + + G+ R +L G+ D
Sbjct: 236 -------HLEAVTPEVRARIMPGKAQVSIAKYMASFSAAVGVFG--RGQVSTYILAGLGD 286
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFS----ECIKRSGYS 347
S L + + L + ++PF P G + + + SG
Sbjct: 287 SREAILEICEKLVALGVYPFVVPFVPISGTPLESHPAPSPDFMHSILGPLSRMLVASGLK 346
Query: 348 SPIRTPRGLDILAACG 363
+ DI A CG
Sbjct: 347 AV-------DIKAGCG 355
>gi|255994316|ref|ZP_05427451.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989]
gi|255993029|gb|EEU03118.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989]
Length = 520
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 70/192 (36%), Gaps = 17/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C+ GC++ C +C+ G + + ++L+ D I+ ++ S
Sbjct: 166 ICLHVAHGCNMRCGYCFAGDGEYNGS-------------KALMDDATAKAAIDFLIRESK 212
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
R+ + G GEPL NFD +K ++ A + R TL+T+G + +
Sbjct: 213 NRRNLEVDFFG-GEPLLNFDVIKNTVKYARSIEKSANKNFRFTLTTNGILIDDEVIEFSN 271
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL + + E++ D + +
Sbjct: 272 EQMSNVVMSLDGRKEKH-DRMRKHAGLGSYELIKDKFIKFAKARKQKDYYIRGTYTGYNT 330
Query: 294 DSPRDALNLIKI 305
D +D L++ +
Sbjct: 331 DFSKDVLHIADL 342
>gi|150390110|ref|YP_001320159.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
QYMF]
gi|149949972|gb|ABR48500.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
Length = 458
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C++ C +C+ + RS + G + I+ ++ S
Sbjct: 95 CLHIAHDCNIRCKYCFASQGDFQGD-------------RSFMSLEVGKKAIDFLLENSGN 141
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
RK + G GEPL NFD VK + R T++T+G + E
Sbjct: 142 RKNLEVDFFG-GEPLMNFDVVKGLVDYGRSREKDFDKNIRFTMTTNGVLLNDENMEYINE 200
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +S+ ++ IN + ++++ R + + K D
Sbjct: 201 NMHNVVLSIDGRKAVNDHMRYTINGQGTYDVIVPKLRKMVEMRKDKHCYVRGTFTKHNLD 260
Query: 295 SPRDALNLIKI 305
+D L+L +
Sbjct: 261 FSQDVLHLADL 271
>gi|329115927|ref|ZP_08244644.1| glycyl-radical enzyme activating protein [Streptococcus parauberis
NCFD 2020]
gi|326906332|gb|EGE53246.1| glycyl-radical enzyme activating protein [Streptococcus parauberis
NCFD 2020]
Length = 257
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 26/214 (12%), Positives = 62/214 (28%), Gaps = 27/214 (12%)
Query: 122 VGCSLTCSFCY---TGT----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
GC L C +C + + L + + E + QV ++ + +D
Sbjct: 28 KGCPLRCPWCANPESQRREPEEMLKADGQSYETVGQVKTIDQIMEEVLKDQDFYEESGGG 87
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ I + + + T+ + + +
Sbjct: 88 LTLSGGEIFAQ--------------FEFAKAILKAAKKAGLHTAIETTAYTKHEQFLDLI 133
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
V + + +++ V + I A ++I ++ ND
Sbjct: 134 QYVDFIYTDLKHYDQIKHRKVTGVANQVIIKNIHA-----AFQAGKKIVLRIPVIPNFND 188
Query: 295 SPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
S DA ++ + + L+PF+ + +Y
Sbjct: 189 SLEDAQCFAQLFNELDINQVQLLPFHQFGENKYK 222
>gi|75392923|sp|Q84F14|HPDA_CLODI RecName: Full=4-hydroxyphenylacetate decarboxylase activating
enzyme; Short=Hpd-AE
gi|28300943|emb|CAD65891.1| HpdA protein [Clostridium difficile]
Length = 316
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 41/311 (13%), Positives = 81/311 (26%), Gaps = 38/311 (12%)
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + + D + P E TV C + GC++
Sbjct: 11 IFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP-ESWTVRPHMMFSELSCQY-ENGCTV 68
Query: 127 TCSFCYTGTQKLV------------RNLTAEEILLQVLLARSLLGDFPGCEDIEGM--VI 172
C G ++ + E + L P D
Sbjct: 69 CHGKCKNGALSFNLDNKPVIDWNICKDCESFECVNSCYYNAFKLCAKPYTVDELVQVIKR 128
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S + + V GEPL + + + L + I S ++
Sbjct: 129 DSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVN----VHTAIETSACVSNEVFNKIF 184
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+I H + ++ + I R+ ++ G
Sbjct: 185 NDIDFAFIDIKH--MDREKHKEQTGVYNDLILENISNL---ANSDWNGRLVLRVPVISGF 239
Query: 293 NDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSE 339
NDS + ++I K +INL+PF+ ++ D+ + +
Sbjct: 240 NDSDENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQD 299
Query: 340 CIKRSGYSSPI 350
+G + +
Sbjct: 300 IFLDNGIACYV 310
>gi|331269793|ref|YP_004396285.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum
BKT015925]
gi|329126343|gb|AEB76288.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum
BKT015925]
Length = 308
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 13/94 (13%)
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC 328
++ +S + I ++ G ND + + K +KIN++P++ +Y
Sbjct: 215 LKNISLVSKYKPILVRIPIIPGFNDDNENIICTANFCKSNNISKINILPYHKLGESKYRQ 274
Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350
+ + I+ G + I
Sbjct: 275 LNIDYNLNNVLTPNADKMNHVKNLIENVGVTCII 308
>gi|253578289|ref|ZP_04855561.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850607|gb|EES78565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 455
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 19/246 (7%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
L ++ E ++ + K + + V E + LC+
Sbjct: 48 EKLENKYNR---EDIETSVRECNKLKEDGMLFTKDVYENVIEEFSNNRQTVVKALCLHIA 104
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C+L C +C+ E R L + + +I + G + +
Sbjct: 105 HDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANSGSRKNL 150
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239
V GEPL N+ VK + + L K R TL+T+G + + + +
Sbjct: 151 EVDFFGGEPLMNWQVVKDLVKYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFCNKEMGNV 210
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+S+ + ++++ + + N + D +D
Sbjct: 211 VLSVDGRKEVHDYMRPFRKGAGSYDLIMPKFQKFAESRNQDKYYVRGTFTHHNLDFSKDV 270
Query: 300 LNLIKI 305
L+L +
Sbjct: 271 LHLADL 276
>gi|255099315|ref|ZP_05328292.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile QCD-63q42]
Length = 316
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 41/311 (13%), Positives = 81/311 (26%), Gaps = 38/311 (12%)
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + + D + P E TV C + GC++
Sbjct: 11 IFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP-ESWTVRPHMMFSELSCQY-ENGCTV 68
Query: 127 TCSFCYTGTQKLV------------RNLTAEEILLQVLLARSLLGDFPGCEDIEGM--VI 172
C G ++ + E + L P D
Sbjct: 69 CHGKCKNGALSFNLDNKPVIDWNICKDCESFECVNSCYYNAFKLCAKPYTVDELVQVIKR 128
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S + + V GEPL + + + L + I S ++
Sbjct: 129 DSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVN----VHTAIETSACVSNEVFNKIF 184
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+I H + ++ + I R+ ++ G
Sbjct: 185 NDIDFAFIDIKH--MDREKHKEQTGVYNDLILENISNL---ANSDWNGRLVLRVPVISGF 239
Query: 293 NDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSE 339
NDS + ++I K +INL+PF+ ++ D+ + +
Sbjct: 240 NDSDENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQD 299
Query: 340 CIKRSGYSSPI 350
+G + +
Sbjct: 300 IFLDNGIACYV 310
>gi|168334725|ref|ZP_02692857.1| Radical SAM domain protein [Epulopiscium sp. 'N.t. morphotype B']
Length = 451
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 16/207 (7%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
I + LC+ C+L C +C+ G + L
Sbjct: 80 NLIPAFLDRKPIVKALCLHVAHDCNLGCKYCFAGEGE--------------YHGPRGLMS 125
Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
+ +I S G + + V GEPL NF V++ + A+ + K R TL+
Sbjct: 126 VEVGKRAIDFLIESSGVRTNLEVDFFGGEPLMNFKVVRELVDYANSRAEQTNKKFRFTLT 185
Query: 221 TSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
T+G + I E + +SL + N K ++++ +
Sbjct: 186 TNGVLLNDQIIDFLNEYMDNVVLSLDGRPEINDQMRPTANGKGSYDIILPKFKKLVEKRG 245
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305
++ D +D L++ ++
Sbjct: 246 GKKYYIRGTFTHKNLDFAKDVLHIAEL 272
>gi|156973834|ref|YP_001444741.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi ATCC
BAA-1116]
gi|156525428|gb|ABU70514.1| hypothetical protein VIBHAR_01544 [Vibrio harveyi ATCC BAA-1116]
Length = 215
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 25/241 (10%), Positives = 69/241 (28%), Gaps = 46/241 (19%)
Query: 126 LTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
+ C +C + +T EEI+ + R + G G + +
Sbjct: 1 MRCKYC-HNRDTWDTHDGKEVTVEEIIAEAKTYRHFMNASGGGITCSGGEAMLQPEFVRD 59
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
E + D+ G ++ + ++ +
Sbjct: 60 FFRAAQAEG----------IHTCLDTNGYIRKH-----------TDVIDEVLDATDLVML 98
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
L + +++ + ++ + + ++ YV++ G D P A
Sbjct: 99 DLKHMKDEIHQEFIGVSNR-RVLDFARYLHKI-----GQKTWIRYVVVPGYTDEPEAAHM 152
Query: 302 LIKILKGIP--AKINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSGYS 347
L + +K + K+ L+P++ ++ +K + + + +
Sbjct: 153 LGEFIKDMDNIEKVELLPYHKLGAHKWEALGVEYPLDGVNPPSKKTMDEIQSILSQYNSN 212
Query: 348 S 348
Sbjct: 213 V 213
>gi|168998753|ref|YP_001688021.1| hypothetical protein pK2044_00975 [Klebsiella pneumoniae
NTUH-K2044]
Length = 369
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 51/282 (18%), Positives = 96/282 (34%), Gaps = 31/282 (10%)
Query: 91 RFPARCIGGPV---EIETVYIPEKSRGTL---CVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
RF R + I T++ + T+ C+ + + C FC G A
Sbjct: 94 RFYDRQTADGIPYSHIATLHGTDVLATTILQTCIRYENR-AKACQFCAIGQSLAAGRTIA 152
Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
+ Q+ + G + + G G + + +K ++++
Sbjct: 153 RKTPEQLAEVARAAVELDGVKHMVMTTGTPSGSD------RGARILVESALAIKAAVNLP 206
Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
G G R+ E L + L AV+ ++R ++P + +E
Sbjct: 207 L--QGQCEPP--------GDAKWFTRMKEAGIDALGMHLEAVTPEVRARIMPGKAQVSVE 256
Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
++A + R +L G+ D+P L+L + L G+ ++PF P G
Sbjct: 257 QYLEAFADAVAVFG--RGQVSTYILAGLGDTPEAILSLSQTLIGLGVYPFVVPFVPISGT 314
Query: 325 EYLCSDQKDIVTFSECIKRSGY---SSPIRTPRGLDILAACG 363
D S ++ G + +R+ DI A CG
Sbjct: 315 PLEHHPAPDSRFMSSILQPLGQMLNQAHLRSS---DIKAGCG 353
>gi|38639531|ref|NP_943300.1| hypothetical protein LV045 [Klebsiella pneumoniae]
gi|38016629|gb|AAR07650.1| hypothetical protein LV045 [Klebsiella pneumoniae]
gi|238549777|dbj|BAH66128.1| hypothetical protein KP1_p235 [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 380
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 51/282 (18%), Positives = 96/282 (34%), Gaps = 31/282 (10%)
Query: 91 RFPARCIGGPV---EIETVYIPEKSRGTL---CVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
RF R + I T++ + T+ C+ + + C FC G A
Sbjct: 105 RFYDRQTADGIPYSHIATLHGTDVLATTILQTCIRYENR-AKACQFCAIGQSLAAGRTIA 163
Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
+ Q+ + G + + G G + + +K ++++
Sbjct: 164 RKTPEQLAEVARAAVELDGVKHMVMTTGTPSGSD------RGARILVESALAIKAAVNLP 217
Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
G G R+ E L + L AV+ ++R ++P + +E
Sbjct: 218 L--QGQCEPP--------GDAKWFTRMKEAGIDALGMHLEAVTPEVRARIMPGKAQVSVE 267
Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
++A + R +L G+ D+P L+L + L G+ ++PF P G
Sbjct: 268 QYLEAFADAVAVFG--RGQVSTYILAGLGDTPEAILSLSQTLIGLGVYPFVVPFVPISGT 325
Query: 325 EYLCSDQKDIVTFSECIKRSGY---SSPIRTPRGLDILAACG 363
D S ++ G + +R+ DI A CG
Sbjct: 326 PLEHHPAPDSRFMSSILQPLGQMLNQAHLRSS---DIKAGCG 364
>gi|187924690|ref|YP_001896332.1| radical SAM protein [Burkholderia phytofirmans PsJN]
gi|187715884|gb|ACD17108.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN]
Length = 356
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 41/255 (16%), Positives = 79/255 (30%), Gaps = 33/255 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + +C FC G A + Q+ +AR+ + + P
Sbjct: 115 TCIRYESR-RKSCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPP 173
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D + + T G
Sbjct: 174 TPDRGAQILCESAFAIKAAVDLPIQAQCEPPDDDRWFARMKASGIDTLGM---------- 223
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ LR ++P PL ++A + + R +L G+ D
Sbjct: 224 -------HLEVVTPALRERIMPGKASVPLSRYMEAFKSAVAVFG--RGQVSTYILAGLGD 274
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSG---YSS 348
S L + + L + ++PF P G + + ++ G ++
Sbjct: 275 SAAAILAMSRELIELGVYPFVVPFVPISGTPLEDHPAPTPEFMK---SVLQPLGGMLNAA 331
Query: 349 PIRTPRGLDILAACG 363
+R+ DI A CG
Sbjct: 332 AMRSS---DIKAGCG 343
>gi|317051293|ref|YP_004112409.1| Radical SAM domain-containing protein [Desulfurispirillum indicum
S5]
gi|316946377|gb|ADU65853.1| Radical SAM domain protein [Desulfurispirillum indicum S5]
Length = 313
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 27/194 (13%)
Query: 121 QVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
CS C +C T R + + ++L + +
Sbjct: 27 HKTCSEDCIYCECGATTRLTTTR--------QEFVPMEAVLHELRHLLATKPQ------- 71
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+ I G GEPL ++ + + R + L T+G + +E
Sbjct: 72 -LDVITFAGSGEPLL----FRRFGELVAAIKAEFPQYR-LCLLTNGTPLTDRALWQECQQ 125
Query: 238 MLAI--SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+ + SL A + ++ + + ++ +I A + I E ++L GIND
Sbjct: 126 LDIVVPSLDAATQEIFTRINRPHHTIDVQEVITALSDFSRQFCGE-IWLEILILPGINDD 184
Query: 296 PRDALNLIKILKGI 309
P L + I
Sbjct: 185 PAHLEALAAACRSI 198
>gi|253688115|ref|YP_003017305.1| pyruvate formate-lyase activating enzyme [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754693|gb|ACT12769.1| pyruvate formate-lyase activating enzyme [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 246
Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 86/269 (31%), Gaps = 53/269 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + + Q GC + C +C + +T EE++ +V+ R
Sbjct: 8 HSFESCGTVDGPGIRFIIFFQ-GCLMRCLYC-HNRDTWDTHGGKEVTVEELMKEVVTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + ++ G++
Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRD---------------WFRACKA----EGIN----- 101
Query: 217 ITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
L T+GFV + ++ ++ + L +++D+ LV ++ L+ Y
Sbjct: 102 TCLDTNGFVRRYDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARY 156
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEY----- 326
N +R YV++ G +D A L + K + KI L+P++ ++
Sbjct: 157 LAKRN-QRTWIRYVVVPGWSDDDASAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGE 215
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+ ++ G+
Sbjct: 216 EYKLDGVKPPKADTMDRIKSILESYGHKV 244
>gi|53803297|ref|YP_114978.1| radical SAM domain-containing protein [Methylococcus capsulatus
str. Bath]
gi|53757058|gb|AAU91349.1| radical SAM domain protein [Methylococcus capsulatus str. Bath]
Length = 365
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 45/294 (15%), Positives = 86/294 (29%), Gaps = 29/294 (9%)
Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT--LCVSSQVGCSLTCSFCYTGTQ 136
S + + + +R G + V + + ++ C+ C +C
Sbjct: 77 SSSMSASHRLSVSDHSRDSAGLRYVYPVLSRRAGGLSLGINLNPNNACNWRCIYC--QVP 134
Query: 137 KLVRNLTAEEILLQVLLARSL---LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP--L 191
L R + VLL+R L L D + E +P R+I +I + G GEP
Sbjct: 135 DLRRGGAPA--VDVVLLSRELEGLLADVLEGDFFERYGVPDDQRRIRDIAISGNGEPTGA 192
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGEEIGVMLAISLHAVSNDL 250
F+ V ++ ++ GL + ++ SG + G L + +
Sbjct: 193 AEFEQVIAAIEKVTERFGLPGRIGFVLITNGSGIERLPVQQGLRHWAALGGEVWFKLDSA 252
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML--KGINDSPRDALNLIKILKG 308
+ L R + + + G S + + L G
Sbjct: 253 TEAGIRRINNVHL-EPQTVRRRIAACAKLCPTWLQTCLFALDGAPSSAPEQEAYLAFLSG 311
Query: 309 IPAKINLIPFNPWPGCEYLCSD------------QKDIVTFSECIKRSGYSSPI 350
+ + IP + + F I+ G + I
Sbjct: 312 LVC--DGIPVRGVLLYGLARPSLQPESSRLARLPAEALEAFGAAIRERGLAVRI 363
>gi|317052952|ref|YP_004119306.1| Radical SAM domain protein [Pantoea sp. At-9b]
gi|316953279|gb|ADU72750.1| Radical SAM domain protein [Pantoea sp. At-9b]
Length = 369
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 25/251 (9%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
C+ + + C FC G + A + Q+ + G + +
Sbjct: 125 TCIRYENR-AKACQFCAIGQSLAAGSTIARKTPAQLAEVAKAAVELDGVKHMVMTTGTPS 183
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
G G + + +K ++ + G G R+ +
Sbjct: 184 GSD------RGARILMESALAIKAAVDLPL--QGQCEPP--------GDAKWFQRLKDAG 227
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
L + L AV+ +R ++P + ++ ++A + R +L G+ D+
Sbjct: 228 IDALGMHLEAVTPAVRARIMPGKAQVSVDQYLEAFADAVAVFG--RGQVSTYILAGLGDT 285
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIRT 352
PR L+L + L + ++PF P G D + + + + + + + +R+
Sbjct: 286 PRAILSLSETLIDLGVYPFVVPFVPISGTPLEHHPAPDSQFMSSILQPLGQMLSQARLRS 345
Query: 353 PRGLDILAACG 363
DI A CG
Sbjct: 346 S---DIKAGCG 353
>gi|306820795|ref|ZP_07454420.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551185|gb|EFM39151.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 457
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 16/197 (8%)
Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
++ + +C+ C+L CS+C+ + + ++
Sbjct: 80 DYIDDIMLANHSDIVKAMCLHVAHDCNLRCSYCFASQGDFGGD-------------KEIM 126
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
G + ++ +V S R+ + G GEPL NF+ VK+ + + G R T
Sbjct: 127 SLEVGKKALDYLVEHSGNRRNLEVDFFG-GEPLMNFEVVKQLVDYGNKIAGEKNKNFRFT 185
Query: 219 LSTSGF--VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
++T+G + E + +SL IN K ++++ +
Sbjct: 186 ITTNGVLLSDDKIEYINENMHNVVLSLDGRKEINDANRPLINGKGSYDLIVPKFQKLIKD 245
Query: 277 SNARRITFEYVMLKGIN 293
+ + N
Sbjct: 246 RPLDKYYYVRGTFTRDN 262
>gi|170735391|ref|YP_001774505.1| amidohydrolase 2 [Burkholderia cenocepacia MC0-3]
gi|169821429|gb|ACA96010.1| amidohydrolase 2 [Burkholderia cenocepacia MC0-3]
Length = 398
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 9/168 (5%)
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+ G P +++ D++ + + V + G E M
Sbjct: 62 VSAEGHVPPPGKLHEWLRAMKDGKDNVDMRVPPTPDMFNRDARVKKMDEFGVEACTMYVG 121
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
+ A + L P+ L G + RI V+ D A+
Sbjct: 122 EMVACISYLNE---PVAANAVLHAYNQWMLDDWGFNYKDRIYTTPVVTL---DDLDAAIV 175
Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
K L ++ L+P P+ G F + +G
Sbjct: 176 EAKWLVANGVRVILMPMGPFNG---RSPADPYFDPFWSILNEAGVRVT 220
>gi|124268661|ref|YP_001022665.1| hypothetical protein Mpe_A3477 [Methylibium petroleiphilum PM1]
gi|124261436|gb|ABM96430.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 359
Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 40/255 (15%), Positives = 81/255 (31%), Gaps = 33/255 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + TC FC G A + Q+ +AR+ + + P
Sbjct: 118 TCIRYESR-RKTCKFCAIGQSLAAGRTVAHKTPEQLAEVARAAVLLDGVKHMVMTTGTPP 176
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + ++ D ++ D+ + + T G
Sbjct: 177 TPDRGAQVLCDSAFAIRAAVDLPIQAQCEPPDTDQWFVRMKAAGIDTLGM---------- 226
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ +LR ++P P+E +++ G+ R +L G+ D
Sbjct: 227 -------HLEVVTPELRERVMPGKATVPVERYLESFEAAVGVFG--RGQVSTYILAGLGD 277
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSP-- 349
+ L++ + L + ++PF P G + + ++ G
Sbjct: 278 TREAILSIAEKLVALGVYPFVVPFVPISGTPLEDHPSPSPEFMKA---VLEPLGAMVSAG 334
Query: 350 -IRTPRGLDILAACG 363
+R+ DI A CG
Sbjct: 335 GLRS---ADIKAGCG 346
>gi|332296006|ref|YP_004437929.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
gi|332179109|gb|AEE14798.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
Length = 306
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 34/221 (15%)
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
C+ C +C G + N P + + K
Sbjct: 24 HKVCNFNCVYCEVGKTTNLINDRRSFY-------------NPEEIERDFRENYKKMGKFD 70
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
+ G GEP N D + + + F+ +I + T+G + N+ V E++
Sbjct: 71 FVTFSGSGEPTLNKD-IGRLVRYVKS-----FNLAKIAVLTNGSLLNLTDVQEDLMDADV 124
Query: 241 I--SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ SL A + + + + ++ +I+ + + I E + +K NDS +D
Sbjct: 125 VIPSLDAANQESFKKINRAHGSLKIDEIINGIKEFRDKFRGE-IWLESLFVKDFNDSKKD 183
Query: 299 ALNLIKILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVT 336
+L + +K LI NP G ++ I
Sbjct: 184 IEDLKRAVK-------LI--NPHKFQIGTIDRPPAEESIKK 215
>gi|325661432|ref|ZP_08150058.1| hypothetical protein HMPREF0490_00792 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472381|gb|EGC75593.1| hypothetical protein HMPREF0490_00792 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 319
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 40/269 (14%), Positives = 81/269 (30%), Gaps = 40/269 (14%)
Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
+ + + +S+Q GC + C FC N++ +E+ ++
Sbjct: 47 VVNTEVDLTKKWVATISTQKGCPMKCRFCDCPKYGFYGNVSLDELCYEIETILEHEDVNI 106
Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
N+ MGEP N + + + + + + I S
Sbjct: 107 TERF--------------NVHFARMGEPTFNNNVLYFTEYMLQRIVKSYIDVKTIHPVIS 152
Query: 223 GFVPNIARVGEEIGVMLA--------------ISLHAVSNDLRNILVPINRKYPLEMLID 268
+P + +E + S+++ ND RN N LE +
Sbjct: 153 TMLPKSNKNLKEFILKWCNIKNNTYNGDAGLQFSINSTDNDQRNEQF-NNMSLELEEISK 211
Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLI-PFNPWPGCE 325
+ P R+ T + + K D+ D L + + KI I N
Sbjct: 212 IAKELPA-PKGRKYTLNFAVTK---DTIIDVKRLSDLFDKEKFIVKITPIHETNSAIDNG 267
Query: 326 YLCSDQ----KDIVTFSECIKRSGYSSPI 350
+ + F + ++G+ +
Sbjct: 268 FDVTTSYTDYDVYREFERPLVKAGWDVIV 296
>gi|303234148|ref|ZP_07320794.1| radical SAM domain protein [Finegoldia magna BVS033A4]
gi|302494689|gb|EFL54449.1| radical SAM domain protein [Finegoldia magna BVS033A4]
Length = 423
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 17/194 (8%)
Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
+ V + C+L CS+C +N+ E L+ + + + I
Sbjct: 62 NSFVVVTNTNCNLRCSYC------YEKNICDTERLM-------IEEENNSIYEFIYRNIK 108
Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
+I NI G GEPL N + + ++ + ++ K + + +
Sbjct: 109 KSDARIFNIEFTG-GEPLLNKKYIFRLVNKINRNLKEKIIKYSLVTNGILLEKEDIKFFN 167
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ + I+L + ++ +++I + Y S +IT + N
Sbjct: 168 DNKFNIQITLDGSKKFHNQERIGLDITNSFDIIIKNIKEYLNNSELLKITIRVNVS---N 224
Query: 294 DSPRDALNLIKILK 307
+ LI LK
Sbjct: 225 KNKESIFELIDFLK 238
>gi|291326420|ref|ZP_06124398.2| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri
DSM 1131]
gi|291314456|gb|EFE54909.1| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri
DSM 1131]
Length = 265
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 37/268 (13%), Positives = 84/268 (31%), Gaps = 51/268 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT--GTQKLVRNL-TAEEILLQVLLARSL 157
E+ + V Q GC + C +C+ N+ T EE++ + + R
Sbjct: 27 HSFESCGTVDGPGIRFIVFFQ-GCLMRCLYCHNRDTWDTHGGNIVTVEELMKEAVTYRHF 85
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + ++ +
Sbjct: 86 MNATGGGVTASGGEAILQAEFVRD---------------WFRACKKENI---------HT 121
Query: 218 TLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
L T+GFV + ++ ++ + L + +++ LV ++ LE Y
Sbjct: 122 CLDTNGFVRRYDPVIDELMDVTDLVMLDLKQIDDEIHQKLVGVSNHRTLE-----FARYL 176
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY------ 326
N ++ YV++ G +D L + K + KI L+P++ ++
Sbjct: 177 AKRN-QKTWVRYVVVPGWSDDDHSVHLLGEFTKDMSNIEKIELLPYHELGKHKWETMGEE 235
Query: 327 ------LCSDQKDIVTFSECIKRSGYSS 348
++ + ++ G+
Sbjct: 236 YKLDGVRPPSKEVMERVKSILESYGHKV 263
>gi|254976344|ref|ZP_05272816.1| putative radical SAM family protein [Clostridium difficile
QCD-66c26]
gi|255093729|ref|ZP_05323207.1| putative radical SAM family protein [Clostridium difficile CIP
107932]
gi|255101920|ref|ZP_05330897.1| putative radical SAM family protein [Clostridium difficile
QCD-63q42]
gi|255307789|ref|ZP_05351960.1| putative radical SAM family protein [Clostridium difficile ATCC
43255]
gi|255315481|ref|ZP_05357064.1| putative radical SAM family protein [Clostridium difficile
QCD-76w55]
gi|255518144|ref|ZP_05385820.1| putative radical SAM family protein [Clostridium difficile
QCD-97b34]
gi|255651260|ref|ZP_05398162.1| putative radical SAM family protein [Clostridium difficile
QCD-37x79]
gi|260684324|ref|YP_003215609.1| putative radical SAM family protein [Clostridium difficile CD196]
gi|260687983|ref|YP_003219117.1| putative radical SAM family protein [Clostridium difficile R20291]
gi|306521102|ref|ZP_07407449.1| putative radical SAM family protein [Clostridium difficile
QCD-32g58]
gi|260210487|emb|CBA64969.1| putative radical SAM family protein [Clostridium difficile CD196]
gi|260214000|emb|CBE06119.1| putative radical SAM family protein [Clostridium difficile R20291]
Length = 459
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 17/209 (8%)
Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
+ E LC++ C+L C +C+ L F
Sbjct: 84 PSFVHREPVVKALCLNVAHDCNLKCKYCFAAQGDFGG--------------EKELMSFEV 129
Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRR-ITLST 221
+ +I + G + + + GEPL NF+ VK+ + + + R IT +
Sbjct: 130 GKAAIDYLIANSGSRKNLEIDFFGGEPLMNFEVVKQLVDYGRSVEKDYNKNIRFTITTNG 189
Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
I E + +SL N+ +N K ++ + + +
Sbjct: 190 VLLNDEIIDYINENMHNVVLSLDGRKEVNDNMRPTLNDKGSYDITLPRFKKLVEKRAKDK 249
Query: 282 ITFEYVMLKGIN-DSPRDALNLIKILKGI 309
+ N D +D ++ + +
Sbjct: 250 YYYIRGTFTRDNLDFSKDVMHFADLGFKL 278
>gi|225568642|ref|ZP_03777667.1| hypothetical protein CLOHYLEM_04720 [Clostridium hylemonae DSM
15053]
gi|225162570|gb|EEG75189.1| hypothetical protein CLOHYLEM_04720 [Clostridium hylemonae DSM
15053]
Length = 468
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 37/252 (14%), Positives = 80/252 (31%), Gaps = 20/252 (7%)
Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115
+ + +R L + + E ++ R + E V +
Sbjct: 52 LPERLREHLGGAYD---SSDIGEALADAAELTEAGRLFTSDTHEGLIEE-VKKRKTVVKA 107
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
LC+ C+L C +C+ E R L + + +I +
Sbjct: 108 LCLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANS 153
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIARVGEE 234
G + + V GEPL N+ VK ++ + R T++T+G + + +
Sbjct: 154 GSRHNLEVDFFGGEPLMNWQVVKDLVAYGRSQEKIHDKHFRFTVTTNGVLLNDEIQEFVN 213
Query: 235 IGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ + ++ + + P N K E+++ + N + +
Sbjct: 214 REMDNVVLSLDGRKEINDRMRPFRNGKGSYELIVPKFQKLAESRNQEKYYIRGTFTRNNL 273
Query: 294 DSPRDALNLIKI 305
D D L+ +
Sbjct: 274 DFAEDILHFADL 285
>gi|167763821|ref|ZP_02435948.1| hypothetical protein BACSTE_02201 [Bacteroides stercoris ATCC
43183]
gi|298480031|ref|ZP_06998230.1| conserved hypothetical protein [Bacteroides sp. D22]
gi|167697937|gb|EDS14516.1| hypothetical protein BACSTE_02201 [Bacteroides stercoris ATCC
43183]
gi|298273840|gb|EFI15402.1| conserved hypothetical protein [Bacteroides sp. D22]
Length = 336
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 43/267 (16%), Positives = 88/267 (32%), Gaps = 45/267 (16%)
Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
+P + + +S+Q GCS+ C FC + RN T ++ +VL A + + +
Sbjct: 58 MPLTEKWVITISTQYGCSMGCKFCDVPKVGIGRNATFNDLKGEVLTAIKQHPEVKHTKRL 117
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGF 224
NI MGEP N + + ++S+ D G S I+
Sbjct: 118 -------------NIHYARMGEPTWNANVLLHAISVKKDIEPFIGDSLVHPVISTMLPKR 164
Query: 225 VPNIARVGEEIGVML-----------AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
+ + + S++ +++ RN + L + + +
Sbjct: 165 NKKLVEFLHKWCYYIKNELYKGDAGLQFSINTTNDEERN-YLFSGSSLSLGEISEIGKSL 223
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKG--IPAKINLI-PFNPWPGCEYLCS- 329
P + R+ + + D+ D L ++ KI + N + S
Sbjct: 224 P-MPVGRKYALNFALAD---DTHIDGKRLRELFNPDKFMCKITPLHRTNSCDENDLHTSG 279
Query: 330 ------DQKDIVTFSECIKRSGYSSPI 350
K + +K +G+ +
Sbjct: 280 GYELFTPYKAVEE---DLKGNGFDVIV 303
>gi|242277914|ref|YP_002990043.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
salexigens DSM 2638]
gi|242120808|gb|ACS78504.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
salexigens DSM 2638]
Length = 423
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 25/215 (11%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C++C + N + + VL P + +I+
Sbjct: 29 KCNIQCNYC--NRKYDCVNESRPGVTSSVL--------KPFQAAEYMDAVLEKEPRITVA 78
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ G G+P N + +++ + + ++ + G +P + + E + I+
Sbjct: 79 GIAGPGDPFANPEETLETMRLLNKKHPHLIF--CLSSNGMGILPYLDELKELGVSHVTIT 136
Query: 243 LHAVSN----DLRNILVPINRKYPLEMLIDACRHYP------GLSNARRITFEYVMLKGI 292
+ A+ + + + Y E + +++ GI
Sbjct: 137 ISAIDPKIGAKIYSWVKDGKVVYHGEKGAKVLLERQLAAIKGLKERGITVKINSIVIPGI 196
Query: 293 NDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY 326
N + K+ + A I N+IP P +
Sbjct: 197 N--EHHIAEVSKVCADLGADIQNMIPLKPTADTPF 229
>gi|291037331|ref|ZP_06568295.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
[Gluconacetobacter xylinus NBRC 3288]
Length = 368
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 76/284 (26%), Gaps = 45/284 (15%)
Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
W + + I R T +C FC G A +
Sbjct: 110 WKIALLHGRDTLATTVHQTCIRYADRRT-----------SCQFCAIGQSLEADRTIAYKT 158
Query: 148 LLQVLLARSLLGDFPGCEDIE-GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
Q+ + G D+ P+V + + ++ D +
Sbjct: 159 PAQLAEVAKAAVELDGVRDMVLTTGTPNVVDRGAAVLAESARAIRAAVDLPLQVQCEPPR 218
Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
G R + G L A + +R ++P ++
Sbjct: 219 DHGWFQRLRDAGADSLGM-----------------HLEAATQAVREKIMPGKATVSVDRY 261
Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+DA + R +L G+ DS D L L + L + ++PF P G
Sbjct: 262 MDAFA--SAVPVFGRGQVNTYILAGLGDSAADILALAERLIALGVYPFVVPFVPISGTPL 319
Query: 327 L---CSDQKDIVT----FSECIKRSGYSSPIRTPRGLDILAACG 363
+ + ++ + S DI A CG
Sbjct: 320 ENHAPPSADFMKSVLAPLGRMLREANMKST-------DIRAGCG 356
>gi|255505152|ref|ZP_05344771.3| radical SAM domain protein [Bryantella formatexigens DSM 14469]
gi|255269307|gb|EET62512.1| radical SAM domain protein [Bryantella formatexigens DSM 14469]
Length = 463
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + + +I + G
Sbjct: 108 CLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANSG 153
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ + V GEPL N+ VK + + L K R TL+T+G + +
Sbjct: 154 SRRNLEVDFFGGEPLMNWQVVKDLVKYGREQEALHDKKFRFTLTTNGVLLNDEVMEFCNR 213
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +S+ + K ++++ + + + + D
Sbjct: 214 EMANVVLSIDGRKEVHDTMRPFRGGKGSYDLVLPKFQKFAESRGQEKYYVRGTFTRNNLD 273
Query: 295 SPRDALNLIKI 305
D L+L +
Sbjct: 274 FAEDVLHLADL 284
>gi|188534276|ref|YP_001908073.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis
Et1/99]
gi|188029318|emb|CAO97195.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis
Et1/99]
Length = 254
Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 36/266 (13%), Positives = 79/266 (29%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
IE+ + Q GC + C +C + ++ E++ VL R
Sbjct: 16 HSIESCGTVDGPGIRFITFFQ-GCLMRCLYC-HNRDTWDTHGGKEVSVAELMDDVLSYRH 73
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + K + D+ G
Sbjct: 74 YINASGGGVTASGGEAILQAEFV--------RDWFRACRA--KGIHTCLDTNGFVRRY-- 121
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
+ ++ ++ + L V+++ LV ++ + L+ Y
Sbjct: 122 ---------DAVIDELLDVTDLVMLDLKQVNDERHQTLVGVSNRRTLD-----FARYLTR 167
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY-------- 326
N R YV++ G +D A L + + + KI L+P++ ++
Sbjct: 168 RN-IRTWIRYVVVPGYSDDDASAHQLGEFTRDMTNVEKIELLPYHELGKHKWLAMGEAYG 226
Query: 327 ----LCSDQKDIVTFSECIKRSGYSS 348
+ + ++ G+S
Sbjct: 227 LEGVRPPKAETLERVKHILESYGHSV 252
>gi|146304501|ref|YP_001191817.1| tRNA-modifying enzyme [Metallosphaera sedula DSM 5348]
gi|145702751|gb|ABP95893.1| Wyosine base formation [Metallosphaera sedula DSM 5348]
Length = 364
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 42/257 (16%), Positives = 80/257 (31%), Gaps = 33/257 (12%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFC------------YTGTQKLVRNLTAEEILLQVLLA 154
Y E R + C C C + + E I+ + +
Sbjct: 55 YGIESHRCVQMTPVSMWCWFRCIHCWRLEPEDVGLDWDETKMPYMDD--PEYIVERSIEE 112
Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
+ K S++ + GEP ++ + + + K
Sbjct: 113 HKRSVSGYLGREGVENNKALEAMKPSHVAISLTGEPTL-YERIGELIREYH--------K 163
Query: 215 RRIT--LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R IT L TSG P++ EE L +SL A + + ++ +++
Sbjct: 164 RGITTFLVTSGVRPDVLASLEEEPSQLFVSLQAPNEEKHRLINRPVVANSWNLVMKTLEI 223
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEYL---- 327
P S+ M+K +N S DA K+++ +P I + + Y
Sbjct: 224 LPSFSS--PTVIRMTMMKEVNMSDDDAREFAKLMRIAMPTYIEVKAYMHVGPSTYRLTKD 281
Query: 328 -CSDQKDIVTFSECIKR 343
++ F+E +
Sbjct: 282 AMPRHSEVRFFAEKLAE 298
>gi|167040100|ref|YP_001663085.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514]
gi|300914184|ref|ZP_07131500.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
gi|307724580|ref|YP_003904331.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
gi|166854340|gb|ABY92749.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
gi|300889119|gb|EFK84265.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
gi|307581641|gb|ADN55040.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
Length = 461
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 29/192 (15%), Positives = 67/192 (34%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T L DF + +I S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGDFKG--------------SRKLMDFETGKKAIDFLIKSS 141
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
G++ + V GEPL NF+ VK+ + + + + T++T+ + +
Sbjct: 142 GKRRNIEVDFFGGEPLLNFEVVKRLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL ++ + ++ + ++ + + +
Sbjct: 202 ENFSNVVLSLDGRKEVNDSMRIRVDGSGSYDTIVPKIKKFVESRGKKEYYVRGTFTAKNL 261
Query: 294 DSPRDALNLIKI 305
D D L++ +
Sbjct: 262 DFANDVLHIADL 273
>gi|87308951|ref|ZP_01091089.1| hypothetical protein DSM3645_19378 [Blastopirellula marina DSM
3645]
gi|87288294|gb|EAQ80190.1| hypothetical protein DSM3645_19378 [Blastopirellula marina DSM
3645]
Length = 289
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 84/284 (29%), Gaps = 56/284 (19%)
Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ--VGCSLTCSFCYTGT--QKLVRNLTAE 145
R + V ++ V+ C+ C +C + R + E
Sbjct: 7 HTLHQRSFDDNKFVYPVLSRRSRGLSVGVNLNPDKICNFDCIYCQVNRREESETRFVETE 66
Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP--LCNFDNVKKSLSI 203
+V L + P R++++I G GEP NFD + +
Sbjct: 67 RYFHEVNEMLQLAASGEIWTTPKFADTPKNLRRVNDIAFSGDGEPTTYRNFDELVGRTAE 126
Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
G+ K + + S F ++ + G E ++ N
Sbjct: 127 IKRQHGMHDVKMVLITNASMFHRDVVQRGLE-------------------VLDANHGEIW 167
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI-LKGIPAKINLIPFNPWP 322
L Y L +I F+ V+ D+ A + + ++ + K+N
Sbjct: 168 AKLDAGTEDYYQLIERTKIPFQRVL-----DNLAAASQVRPLVIQTLFMKVN-------- 214
Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
G ++ + + + +I AA G LK
Sbjct: 215 GVG---PSDAELTAYCQRL--------------QEITAAGGMLK 241
>gi|323703288|ref|ZP_08114939.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
gi|323531753|gb|EGB21641.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
Length = 450
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ + C+L C +C+ G Q LL + G I+ ++ S
Sbjct: 94 CLHAAHDCNLRCRYCFAGQ-------------GQFGGPSGLLSEEVGRAAIDFLIEQSGN 140
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
RK I G GEPL NF +K+ + + K + TL+T+G + + + +
Sbjct: 141 RKHVEIDFFG-GEPLLNFKVIKELVPYGRQKAEQAGKKIKFTLTTNGVLLNQEVQQFLID 199
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +SL + + K +M++ + Y A + D
Sbjct: 200 NDMAAVLSLDGRPEVHNAMRPAPSGKGSYDMVVKHFQEYVQRQPAAGYYIRGTFTRHNLD 259
Query: 295 SPRDALNLIKI 305
+D L++ ++
Sbjct: 260 FSQDVLHMAEL 270
>gi|126697727|ref|YP_001086624.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile 630]
gi|122974232|sp|Q18CP3|HPDA_CLOD6 RecName: Full=4-hydroxyphenylacetate decarboxylase activating
enzyme; Short=Hpd-AE
gi|115249164|emb|CAJ66975.1| putative 4-hydroxyphenylacetate decarboxylase,activating subunit
HpdA; putative glycyl-radical activating family protein
[Clostridium difficile]
Length = 316
Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 41/311 (13%), Positives = 81/311 (26%), Gaps = 38/311 (12%)
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + + D + P E TV C + GC++
Sbjct: 11 IFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP-ESWTVRPHMMFSELSCQY-ENGCTV 68
Query: 127 TCSFCYTGTQKLV------------RNLTAEEILLQVLLARSLLGDFPGCEDIEGM--VI 172
C G ++ + E + L P D
Sbjct: 69 CHGKCKNGALSFNLDNKPVIDWNICKDCESFECVNSCYYNAFKLCAKPYTVDELVQVIKR 128
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S + + V GEPL + + + L + I S ++
Sbjct: 129 DSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVN----IHTAIETSACVSNEVFNKIF 184
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+I H + ++ + I R+ ++ G
Sbjct: 185 NDIDFAFIDIKH--MDREKHKEQTGVYNDLILENISNL---ANSDWNGRLVLRVPVISGF 239
Query: 293 NDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSE 339
NDS + ++I K +INL+PF+ ++ D+ + +
Sbjct: 240 NDSDENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQD 299
Query: 340 CIKRSGYSSPI 350
+G + +
Sbjct: 300 IFLDNGIACYV 310
>gi|295110857|emb|CBL24810.1| Pyruvate-formate lyase-activating enzyme [Ruminococcus obeum
A2-162]
Length = 245
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 41/237 (17%)
Query: 122 VGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC++ C FC+ T + T ++L Q L ++ G+ G
Sbjct: 30 SGCAMRCQFCHNPDTWKMGEGQQYTPSQLLKQALRYKNYWGNKGG--------------- 74
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
I + G GEPL D + + +A + T +
Sbjct: 75 ---ITVSG-GEPLLQIDFLIEFFRMAKAEGVHTTLDTSANPYTEKEPFYSKWLELMKYTD 130
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
L + ++ +I + + + + + +V++ G +D
Sbjct: 131 LVLLDIKQIDEEEHIKLTGQSNKNILTMARKL-----SDMGKPMWIRHVLVPGGSDKDEY 185
Query: 299 ALNLIKILKGIPA--KINLIPFN------------PWPGCEYLCSDQKDIVTFSECI 341
L + + ++ ++P++ P+P ++ I E +
Sbjct: 186 LHRLADFIHTLKTVERVEVLPYHTLGVFKWEQLGIPYPLEGVRPPSEERINNAREIL 242
>gi|317152744|ref|YP_004120792.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
aespoeensis Aspo-2]
gi|316942995|gb|ADU62046.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
aespoeensis Aspo-2]
Length = 423
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 35/271 (12%), Positives = 84/271 (30%), Gaps = 43/271 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C++C + + + + P + +I+
Sbjct: 30 KCNIQCNYCN----------RKYDCVNESRPGVTSGILKPFQAAQYMDKVLEKEPRITVA 79
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ G G+P N V +++ + ++ ++ + G +P + + + I+
Sbjct: 80 GIAGPGDPFANPAEVIETMRLLNERHPELLF--CLSTNGMGILPYLDDIAALGVSHVTIT 137
Query: 243 LHAVSN----DLRNILVPINRKYPLEMLIDACRHYP------GLSNARRITFEYVMLKGI 292
+ AV + + N Y E + +++ G+
Sbjct: 138 ISAVDPAIGARIYAWVKDGNVVYRGEQGAALLLERQLAAIRGLKERGIVVKINSIIIPGV 197
Query: 293 NDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYS 347
N+ A + I N+IP P + + ++ + + G+
Sbjct: 198 NEGHLVEVARVTAALGADIQ---NMIPLKPTQDTPFAELPEPGRDVVLPLRK--EAGGFI 252
Query: 348 ---SPIRTPR-------GLDILAA-CGQLKS 367
+ + R G D AA CG L++
Sbjct: 253 SQMTHCKRCRADAVGLLGNDQSAALCGTLQA 283
>gi|289423115|ref|ZP_06424930.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L]
gi|289156446|gb|EFD05096.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L]
Length = 457
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 17/196 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C++ C+L C +C+ L+ G + I+ ++ S
Sbjct: 97 CLNVAHDCNLKCKYCFAKQGDFGGK-------------AELMPLEVGKKAIDYLIANSGS 143
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
RK I G GEPL N++ VK ++ + + R T++T+G + E
Sbjct: 144 RKNLEIDFFG-GEPLMNWEVVKALVAYGREVEKPAGKNIRYTITTNGVLLDDEKIDFINE 202
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +SL + + +N K ++++ + + + N
Sbjct: 203 HMHNVVLSLDGRKEVNDGMRLTLNDKGSYDLIVPKFQKLVAQRPKDKYYYVRGTFTRDNL 262
Query: 294 DSPRDALNLIKILKGI 309
D +D + + +
Sbjct: 263 DFSKDVNHFYDLGFEL 278
>gi|169350747|ref|ZP_02867685.1| hypothetical protein CLOSPI_01520 [Clostridium spiroforme DSM 1552]
gi|169292610|gb|EDS74743.1| hypothetical protein CLOSPI_01520 [Clostridium spiroforme DSM 1552]
Length = 461
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L CS+C+ K L F + ++ + G
Sbjct: 103 CLHVAHTCNLNCSYCFASQGKYKG--------------ERALMSFEVGKQALDFLVENSG 148
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEE 234
+ + V GEPL NF VK ++ A R TL+T+G +
Sbjct: 149 TRHNLEVDFFGGEPLMNFQVVKDLVAYARSIEKEKNKNFRFTLTTNGMLIDDEVIEFANR 208
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +SL V K E ++ + + D
Sbjct: 209 ECSNVVLSLDGRKEIHDRYRVDYAGKGSWEKIVPKFQKLVEARGGKDYYMRGTFTHANPD 268
Query: 295 SPRDALNLIKI 305
+D ++ +
Sbjct: 269 FLKDVQTMLDL 279
>gi|281357881|ref|ZP_06244366.1| glycyl-radical enzyme activating protein family [Victivallis
vadensis ATCC BAA-548]
gi|281315539|gb|EFA99567.1| glycyl-radical enzyme activating protein family [Victivallis
vadensis ATCC BAA-548]
Length = 300
Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 36/222 (16%)
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE-------------EILLQVLLARSLLGDF 161
T+C C C G R E+ Q+ ++ +
Sbjct: 56 TVCGRCVPACPHGCHKIEQGRHVFNREFCVGCGKCVKHCLSDALELCGQLRSVEEVISEV 115
Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
+ I + G GEP+ FD ++ L A + + + L T
Sbjct: 116 LKDKLFYDNSGG-------GITLSG-GEPMAQFDFTQELLKRAKE------AGLHVCLET 161
Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
GF P V + + + ++ + + + N
Sbjct: 162 CGFAPQEYYARILPFVDIFLYDLKTVDAEKHRRLTGQDLAVIHGNLRFLDE-----NGAH 216
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI---PFNP 320
I ++ G+NDS + + ++ + + + + I P++P
Sbjct: 217 IRLRCPLVPGVNDSEEELRGIGELAETL-SHVAGIDVEPYHP 257
>gi|188590043|ref|YP_001921250.1| glycyl-radical enzyme activating protein family [Clostridium
botulinum E3 str. Alaska E43]
gi|188500324|gb|ACD53460.1| glycyl-radical enzyme activating protein family [Clostridium
botulinum E3 str. Alaska E43]
Length = 313
Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------------L 327
R+ +++ ND+ +A+ + + INL+PF+ ++
Sbjct: 225 RLVIRMPVIRDFNDTVENAMATADFMNDLGIYEINLLPFHRMGDSKWTQLGKKYSYSNDE 284
Query: 328 CSDQKDIVTFSECIKRSGYSSPI 350
+ + + + + I
Sbjct: 285 PTSEDKLDELQDIYLDRKIACYI 307
>gi|162149506|ref|YP_001603967.1| hypothetical protein GDI_3744 [Gluconacetobacter diazotrophicus PAl
5]
gi|161788083|emb|CAP57687.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 371
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 45/283 (15%), Positives = 83/283 (29%), Gaps = 43/283 (15%)
Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
W + + I R T +C FC G A +
Sbjct: 110 WKIALLHGRDTLATTVHQTCIRYADRRT-----------SCQFCAIGQSLEAGRTIAYKT 158
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
Q+ D D+ NIV G + +K ++ +
Sbjct: 159 PQQLAEVAKAAVDLDQVRDMVLTTGTP------NIVDRGAAVLAESARAIKAAVDLPL-- 210
Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
R R+ + L + L A + +R ++P ++ +
Sbjct: 211 QVQCEPPR--------DHDWFQRLRDVGADTLGMHLEAATQRVRERIMPGKATVSVDRYM 262
Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
DA + R +L G+ D+ + L L L + ++PF P G
Sbjct: 263 DAFA--SAVPVFGRGQVNTYILAGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLE 320
Query: 328 ---CSDQKDIVT-FS---ECIKRSGYSSPIRTPRGLDILAACG 363
+ + + F+ + ++ +G +S DI A CG
Sbjct: 321 DHAPPSAEFMASLFTPLGKMLRTAGMTS-------SDIRAGCG 356
>gi|227872098|ref|ZP_03990471.1| radical SAM domain protein [Oribacterium sinus F0268]
gi|227842047|gb|EEJ52304.1| radical SAM domain protein [Oribacterium sinus F0268]
Length = 459
Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 73/252 (28%), Gaps = 24/252 (9%)
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TL 116
R + Q + +PE ++ + L + + G L
Sbjct: 41 REEVLQKLKVEFPENTEQDFQDCFSDIDELIESKKLFTKDNYAPLAGKLKSHSGNVIKAL 100
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L CS+C+ S L F + +I + G
Sbjct: 101 CLLVAHSCNLACSYCFASQG--------------HYHGESGLMSFETGKRALDFLIENSG 146
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGE 233
+ + V GEPL NF K ++ A G +F +T + G I
Sbjct: 147 TRRNLEVDFFGGEPLVNFQVCKDLVAYARSIEKEKGKNFRF-TLTTNGVGLTEEIMDWAN 205
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL V K + ++ + + + + N
Sbjct: 206 EECHNVVLSLDGRKEVNDRFRVDRKGKGSYDQIVPKFQRFVEKR-GDKEYYMRGTFSHFN 264
Query: 294 -DSPRDALNLIK 304
D D ++
Sbjct: 265 TDFTEDIAHMAD 276
>gi|207108372|ref|ZP_03242534.1| hypothetical protein HpylH_01830 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 28
Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 348 SPIRTPRGLDILAACGQLKSLS 369
IR + LDI AACGQL+
Sbjct: 2 CTIRESKALDIEAACGQLREKK 23
>gi|167746208|ref|ZP_02418335.1| hypothetical protein ANACAC_00913 [Anaerostipes caccae DSM 14662]
gi|167654201|gb|EDR98330.1| hypothetical protein ANACAC_00913 [Anaerostipes caccae DSM 14662]
Length = 442
Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 20/192 (10%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
C+ C+L C +C+ + R++ + E+ Q L + +V S
Sbjct: 84 CLHIAHDCNLACRYCFAEEGEYHGDRSMMSFEVGKQAL---------------DFLVENS 128
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
R+ + G GEPL NF+ VK+ ++ K R TL+T+G + +
Sbjct: 129 GSRRNLEVDFFG-GEPLMNFEVVKQLVAYGRSLEEKHSKKFRFTLTTNGVLLDDEVMEFA 187
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+ +S+ + N K +++ID + + + N +
Sbjct: 188 NREMANVVLSIDGRKEVHDKMRPTRNGKGSYDLIIDKFKKFAEMRNGKSYYVRGTFTHDN 247
Query: 293 NDSPRDALNLIK 304
D +D L+L
Sbjct: 248 LDFSKDVLHLAD 259
>gi|317470624|ref|ZP_07930010.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
gi|316901915|gb|EFV23843.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
Length = 453
Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 20/192 (10%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
C+ C+L C +C+ + R++ + E+ Q L + +V S
Sbjct: 95 CLHIAHDCNLACRYCFAEEGEYHGDRSMMSFEVGKQAL---------------DFLVENS 139
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
R+ + G GEPL NF+ VK+ ++ K R TL+T+G + +
Sbjct: 140 GSRRNLEVDFFG-GEPLMNFEVVKQLVAYGRSLEEKHSKKFRFTLTTNGVLLDDEVMEFA 198
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+ +S+ + N K +++ID + + + N +
Sbjct: 199 NREMANVVLSIDGRREVHDKMRPTRNGKGSYDLIIDKFKKFAEMRNGKSYYVRGTFTHDN 258
Query: 293 NDSPRDALNLIK 304
D +D L+L
Sbjct: 259 LDFSKDVLHLAD 270
>gi|251780244|ref|ZP_04823164.1| glycyl-radical enzyme activating protein family [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243084559|gb|EES50449.1| glycyl-radical enzyme activating protein family [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 313
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------------L 327
R+ +++ ND+ +A+ + + INL+PF+ ++
Sbjct: 225 RLVIRMPVIRDFNDTVENAMATADFMNDLGIYEINLLPFHRMGDSKWTQLGKKYSYRNDE 284
Query: 328 CSDQKDIVTFSECIKRSGYSSPI 350
+ + + + + I
Sbjct: 285 PTSEDKLDELQDIYLDRKIACYI 307
>gi|145299597|ref|YP_001142438.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142852369|gb|ABO90690.1| pyruvate formate-lyase 1 activating enzyme [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 261
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 80/274 (29%), Gaps = 46/274 (16%)
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILL 149
+ IG +ET + V Q GC + C +C+ T + R +T E++
Sbjct: 14 ESGVIGRIHSVETCGTVDGPGIRFIVFMQ-GCLMRCKYCHNRDTWDTQGGREVTVPELMS 72
Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
+ R + G G I+ + + +
Sbjct: 73 DITSYRHFMNASGGGVTASGGEAMLQQNFIAELFAACKEKGVHTC--------------- 117
Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
L T+GFV + +++ + L + +P+ L A
Sbjct: 118 ---------LDTNGFVRHYDEQLDKVLDNTDLVLLDIKQINDEKHIPLTHVSNKYTLEFA 168
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEY 326
Y + YV++ +D A L + + + K+ L+P++ ++
Sbjct: 169 --RYLAAKGKT-MWIRYVVVPTWSDDDESAEGLGQFIAELGDSVEKVELLPYHELGKHKW 225
Query: 327 ------------LCSDQKDIVTFSECIKRSGYSS 348
++ + + + +
Sbjct: 226 DVLGENYDLTGIKPPSKETMDRVQGILAKYHNNV 259
>gi|16081955|ref|NP_394365.1| hypothetical protein Ta0906 [Thermoplasma acidophilum DSM 1728]
gi|10640183|emb|CAC12035.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 538
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 37/300 (12%), Positives = 84/300 (28%), Gaps = 28/300 (9%)
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
L+ I +PE+V + + K + EI T+ P + G
Sbjct: 167 LDGEAEIDFPELVRKMEKNEPIPKVTY----GRMPKVEEIPTIIKPSRFGEVQIT---RG 219
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C C FC + R++ E+I+ +V + + ++ I G K +
Sbjct: 220 CPRGCQFCSITPETF-RSIPIEDIVKEV---QLNIDHGITGIELLTDDIMLYGSKKLQVN 275
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
+ + + T+ + + E + L
Sbjct: 276 HEALVNLFTTVKKMGATHIYFPHISAPGAKSSPKTVEAIAEIAEYDKYPAE---APVVGL 332
Query: 244 HAVSNDLRNILV-----PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ S + + + P +++IDA T ++ +
Sbjct: 333 ESGSERIISKYMRGKPFPWTPHDWGDVIIDATGIMVDNHIHPCYTMTIGYPDETDEDIEE 392
Query: 299 ALNLIKILK--GIPAKINLIPFNPWPGCEYLC---SDQKDI-VTFSECI---KRSGYSSP 349
++ L++ + + A I +P P I + + + +
Sbjct: 393 SIKLVERMIDLDLKAWIFPLPVIPMTASRLKGNEFPWIDTIPKKYWDILYISWKHSIKVT 452
>gi|161505162|ref|YP_001572274.1| hypothetical protein SARI_03299 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866509|gb|ABX23132.1| hypothetical protein SARI_03299 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 342
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 89/301 (29%), Gaps = 55/301 (18%)
Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
+EL L + + ++R Q + ++ + + + + +
Sbjct: 25 NPDELLHLL----QIEANEKLRAGQDARHLFALRV---------PRAFIARM-EKGNPDD 70
Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
P + S D + + ++R + + GC++ C +C
Sbjct: 71 PLLRQVLTSQDEFIVAPGFSTDPLEEQHSVVPGLLHKYQNR--ALLLVKGGCAVNCRYC- 127
Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
R+ E + + ++ I+ G G+PL
Sbjct: 128 -----FRRHFPYAE------------NQGNKRNWKVALEYIAAHPELDEIIFSG-GDPLM 169
Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
D+ L + + + +R+ I + L A + R
Sbjct: 170 AKDHELDWLLTQLE-----------AIKHVKRLRIHSRLPVVIPARITNELVARFDQSRL 218
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEY----VMLKGINDSPRDALNLIKILKG 308
++ +N + +A + RR+ V+L+G+ND +A L +
Sbjct: 219 QILLVNHTNHANEVDEAFC--LAMKKLRRVGVTLLNQSVLLRGVND---NAKTLANLSNA 273
Query: 309 I 309
+
Sbjct: 274 L 274
>gi|255656734|ref|ZP_05402143.1| putative radical SAM family protein [Clostridium difficile
QCD-23m63]
gi|296452437|ref|ZP_06894138.1| radical SAM domain protein [Clostridium difficile NAP08]
gi|296877786|ref|ZP_06901812.1| radical SAM domain protein [Clostridium difficile NAP07]
gi|296258767|gb|EFH05661.1| radical SAM domain protein [Clostridium difficile NAP08]
gi|296431237|gb|EFH17058.1| radical SAM domain protein [Clostridium difficile NAP07]
Length = 459
Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 17/209 (8%)
Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
+ E LC++ C+L C +C+ L F
Sbjct: 84 PSFVHREPVVKALCLNVAHDCNLKCKYCFAAQGDFGG--------------EKELMSFEV 129
Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRR-ITLST 221
+ +I + G + + + GEPL NF+ VK+ + + + R IT +
Sbjct: 130 GKAAIDYLIANSGSRKNLEIDFFGGEPLMNFEVVKQLVYYGRSVEKDYNKNIRFTITTNG 189
Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
I E + +SL N+ +N K ++ + + +
Sbjct: 190 VLLNDEIIDYINENMHNVVLSLDGRKEVNDNMRPTLNDKGSYDITLPRFKKLVEKRAKDK 249
Query: 282 ITFEYVMLKGIN-DSPRDALNLIKILKGI 309
+ N D +D ++ + +
Sbjct: 250 YYYIRGTFTRDNLDFSKDVMHFADLGFKL 278
>gi|209544748|ref|YP_002276977.1| Radical SAM domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532425|gb|ACI52362.1| Radical SAM domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 371
Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 45/283 (15%), Positives = 83/283 (29%), Gaps = 43/283 (15%)
Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
W + + I R T +C FC G A +
Sbjct: 110 WKIALLHGRDTLATTVHQTCIRYADRRT-----------SCQFCAIGQSLEAGRTIAYKT 158
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
Q+ D D+ NIV G + +K ++ +
Sbjct: 159 PQQLAEVAKAAVDLDQVRDMVLTTGTP------NIVDRGAAVLAESARAIKAAVDLPL-- 210
Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
R R+ + L + L A + +R ++P ++ +
Sbjct: 211 QVQCEPPR--------DHDWFQRLRDAGADTLGMHLEAATQRVRERIMPGKATVSVDRYM 262
Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
DA + R +L G+ D+ + L L L + ++PF P G
Sbjct: 263 DAFA--SAVPVFGRGQVNTYILAGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLE 320
Query: 328 ---CSDQKDIVT-FS---ECIKRSGYSSPIRTPRGLDILAACG 363
+ + + F+ + ++ +G +S DI A CG
Sbjct: 321 DHAPPSAEFMASLFTPLGKMLRTAGMTS-------SDIRAGCG 356
>gi|182417460|ref|ZP_02948787.1| NifN-B [Clostridium butyricum 5521]
gi|237665591|ref|ZP_04525579.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182378629|gb|EDT76156.1| NifN-B [Clostridium butyricum 5521]
gi|237658538|gb|EEP56090.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 888
Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 33/220 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C+++C++C+ + + + + P + + S + I
Sbjct: 508 KCNVSCNYCH----------RKYDCVNESRPGVTTEVLSPEQAFEKYKYVKSKMPNLKVI 557
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLA 240
+ G G+ L NFDNVK++L + + + LST+G + + +
Sbjct: 558 GIAGPGDALANFDNVKETLKLIRNDD----PEITFCLSTNGLMLPFYAQELIDLGVSHVT 613
Query: 241 ISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
I+++AV+ ++ + + L + ++ + VM
Sbjct: 614 ITINAVNPEISAKVYKYVDYLGVIYRGEEAAQILLNNQLSGLKYLTDR--GIVVKVNIVM 671
Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
LKGIND ++ K +K A I N++ P +
Sbjct: 672 LKGIND--EHIYDITKKVKDFGATITNIMQMIPVKDSVFE 709
>gi|227328163|ref|ZP_03832187.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 246
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 86/269 (31%), Gaps = 53/269 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + + Q GC + C +C + +T EE++ +V+ R
Sbjct: 8 HSFESCGTVDGPGIRFIIFFQ-GCLMRCLYC-HNRDTWDTHGGKEVTVEELMKEVVTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + ++ G++
Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRD---------------WFRACKA----EGIN----- 101
Query: 217 ITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
L T+GFV + ++ ++ + L +++D+ LV ++ L+ Y
Sbjct: 102 TCLDTNGFVRRYDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARY 156
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY----- 326
N +R YV++ G +D A L + K + KI L+P++ ++
Sbjct: 157 LAKRN-QRTWIRYVVVPGWSDDDASAHKLGEFTKDMKNIEKIELLPYHELGKHKWIAMGE 215
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+ ++ G+
Sbjct: 216 EYKLDGVKPPKADTMDRVKSILESYGHKV 244
>gi|119186009|ref|XP_001243611.1| hypothetical protein CIMG_03052 [Coccidioides immitis RS]
Length = 733
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + ++ + ID
Sbjct: 172 RELCLTTNGISLHRKLDSMAEAGLTGVNLSLDTLDPFQFQLMTRRKGFEAVMKSIDRILE 231
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
L ++ V+++G+ND + + +++ + P ++ I + P+ G ++ Q
Sbjct: 232 MNELGARIKLKINCVVMRGLNDR--EIIPFVEMGREKPVEVRFIEYMPFDGNKW---SQG 286
Query: 333 DIVTFSECIK 342
+ + + ++
Sbjct: 287 KMFPYKDMLR 296
>gi|299143206|ref|ZP_07036286.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517691|gb|EFI41430.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 248
Score = 40.4 bits (93), Expect = 0.50, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 74/232 (31%), Gaps = 42/232 (18%)
Query: 118 VSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
V GC L C+FC+ T RN+T EEI+ + + + G G
Sbjct: 21 VFFLQGCPLRCAFCHNVDTQNPFGGRNITVEEIVERSRKMKPYFRNGKGGVTFSGGEPTL 80
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
G+ + L VK G+ +T+ TSG
Sbjct: 81 DGKFL-----------LDAIKAVKA--------EGI-----HVTVDTSGVGDQKYYDEII 116
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L + N + + PL+ I+A + + +VM+ + D
Sbjct: 117 EEADLILLDIKHYNAIGFKNITERNISPLKKFIEAVER-----HNTPVWIRHVMMPKVTD 171
Query: 295 SPRDALNLIKILKGIP---AKINLIPFNPWP-------GCEYLCSDQKDIVT 336
S L + + I KI ++P++ G EY D + +
Sbjct: 172 SKYHMDKLCEFIAPIKDKIEKIEILPYHTMGVHKYEDLGIEYKLKDMEAMDK 223
>gi|158521649|ref|YP_001529519.1| radical SAM domain-containing protein [Desulfococcus oleovorans
Hxd3]
gi|158510475|gb|ABW67442.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
Length = 313
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 66/232 (28%), Gaps = 36/232 (15%)
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+ C +C G + L + + I
Sbjct: 34 CTYDCIYCQLGKSSSK-------------TVKRLPYRDADTVLAQLFERLEKIDRPDCIT 80
Query: 184 MMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLA 240
+ G GEP N D V + +D + + T+G + + + + +
Sbjct: 81 IAGSGEPTLNSDIGAVIAGIKQKTDIP--------VVVLTNGSLLSDPEVQSDLLAADMV 132
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298
I ++ + INR Y S ++ E ++ GIN S D
Sbjct: 133 IP--SLDAWNPEMFASINRPYRTVDFTTMTEGLVSFSKAYGGQLWLEIFIMDGINASVDD 190
Query: 299 ALNLIKILKGI-PAKINLIPFN----PWPGCEYLCSDQKDIVTFSECIKRSG 345
A ++ I PA + N P + I F + R+
Sbjct: 191 ARAFKPLVDRINPAVV---YVNTAVRPPEESFVKQASPAMIENFYRTLGRAH 239
>gi|332701620|ref|ZP_08421708.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
Bay]
gi|332551769|gb|EGJ48813.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
Bay]
Length = 327
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 20/195 (10%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
++S C++ C +C G + R D VG
Sbjct: 23 LTSAPICTMDCLYCEVGR------------TAVLTTERKAYVPAKAILDELAHWQEHVGL 70
Query: 178 KISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
+ + + G GEPL N + V + + + S V R
Sbjct: 71 PLDAVTLGGSGEPLLNTEFGEVIRGARRIM-----PSVPVAVLTNASLLVEPEVRRELGQ 125
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ SL ++ ++ + + + +A + A RI E +++ G+NDS
Sbjct: 126 ADIVLPSLDSLVDEEFAAVNRPAPGVTPQAVAEALLAF-RSEFAGRIFLEVLLVAGVNDS 184
Query: 296 PRDALNLIKILKGIP 310
+ L + +
Sbjct: 185 EENLRRLKAFVPQLR 199
>gi|150015587|ref|YP_001307841.1| glycyl-radical activating family protein [Clostridium beijerinckii
NCIMB 8052]
gi|149902052|gb|ABR32885.1| glycyl-radical enzyme activating protein family [Clostridium
beijerinckii NCIMB 8052]
Length = 300
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
T+ T+G+ N V L + + ++ V + +
Sbjct: 158 HTTIETTGYTSNEIFSSFIDDVDLLLFDIKHYDREKHFKVTNVYNDLIIENLK-----IA 212
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327
+ N + + ++ IN S DA K+L+ + A KINL+PF+ + +Y
Sbjct: 213 IDNGKDVIIRIPVIPNINSSLEDAKGFCKLLESVNAKKINLLPFHQFGQKKYE 265
>gi|330990596|ref|ZP_08314553.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
[Gluconacetobacter sp. SXCC-1]
gi|329762298|gb|EGG78785.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
[Gluconacetobacter sp. SXCC-1]
Length = 315
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 42/284 (14%), Positives = 76/284 (26%), Gaps = 45/284 (15%)
Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
W + + I R T +C FC G A +
Sbjct: 57 WKIALLHGRDTLATTVHQTCIRYADRRT-----------SCQFCAIGQSLEADRTIAYKT 105
Query: 148 LLQVLLARSLLGDFPGCEDIE-GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
Q+ + G D+ P+V + + ++ D +
Sbjct: 106 PAQLAEVAKAAVELDGVRDMVLTTGTPNVVDRGAAVLAESARAIRAAVDLPLQVQCEPPR 165
Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
G R + G L A + +R ++P ++
Sbjct: 166 DHGWFQRLRDAGADSLGM-----------------HLEAATQAVREKIMPGKATVSVDRY 208
Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
++A + R +L G+ DS D L L + L + ++PF P G
Sbjct: 209 MNAFA--SAVPVFGRGQVNTYILAGLGDSAADILALAERLIALGVYPFVVPFVPISGTPL 266
Query: 327 L---CSDQKDIVT----FSECIKRSGYSSPIRTPRGLDILAACG 363
+ + ++ + S DI A CG
Sbjct: 267 ENHAPPSADFMKSVLAPLGRMLREANMKST-------DIRAGCG 303
>gi|213618828|ref|ZP_03372654.1| hypothetical protein SentesTyp_21135 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 35
Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 357 DILAACGQLKSLS-KRIPKVPRQEMQ 381
DI AACGQL R + R+ MQ
Sbjct: 1 DIDAACGQLAGDVIDRTKRTLRKRMQ 26
>gi|228912462|ref|ZP_04076141.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200]
gi|228847177|gb|EEM92152.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200]
Length = 468
Score = 40.4 bits (93), Expect = 0.54, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 17/234 (7%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
+ + E I+ K + + I+ + P + LC++ C+L+C +C+
Sbjct: 60 KEIRETIADIEELKRDGKLFTDDDYKDLSIDLINRPTYVKA-LCLNVAHTCNLSCEYCFA 118
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
K N R+++ G I+ ++ S + ++ G GEPL
Sbjct: 119 SQGKYNGN-------------RAIMSYEVGKRAIDFLLENSGNHRNLDVDFFG-GEPLMA 164
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLR 251
+ VK+ ++ A + R T +T+G + I + + +SL
Sbjct: 165 WKTVKQIVAYARNKEEEYKKTFRFTFTTNGMLLNDEITDFLNQDMHNVVLSLDGRKKVHD 224
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +N K ++ + + + D D ++ +
Sbjct: 225 YLRKTVNGKGSYNHIVPKFKEFVEKRGDKEYYVRGTYTHNNVDFTNDIYHIADL 278
>gi|328675885|gb|AEB28560.1| Lysine 2,3-aminomutase [Francisella cf. novicida 3523]
Length = 328
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 52/260 (20%)
Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
LL Q I+ E++D+ S D ++ + R L +Q
Sbjct: 62 LLKQVLPIVDEEVIDQAYSSDPLD----------EKNYNKVPGLLHKYHGRVLLI--AQT 109
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C +C+ N+ + LQ + + I +
Sbjct: 110 SCAVHCRYCFRKEFDYKDNIPGRKDWLQAF------------------EYIANDQSIEEV 151
Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
++ G G+PL N D V + + + L R + + RV E +
Sbjct: 152 ILSG-GDPLLNNDEVLEFFIENIQQIAHIKRLRIHSRIPVVLPERITTKLLRVLSEHRLD 210
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ +H + + N L+ + + I + +LK IND
Sbjct: 211 TILVIHVNHPNE----LDDNISEVLKEIH---------KHGIIILNQSTLLKDINDDANV 257
Query: 299 ALNLIKILKGIPAKINLIPF 318
L K I AK+ IP+
Sbjct: 258 LYALS--TKLINAKV--IPY 273
>gi|209518003|ref|ZP_03266835.1| amidohydrolase 2 [Burkholderia sp. H160]
gi|209501609|gb|EEA01633.1| amidohydrolase 2 [Burkholderia sp. H160]
Length = 398
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 9/154 (5%)
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
+++ D++ + + + + G E M + A + L
Sbjct: 76 EWLRAMKDGKDNVDMRVPPTPDMFNRDARLKKMDEFGVEACTMYIGEMVACISYLNE--- 132
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
P+ L G + RI V+ D A+ K L ++ L
Sbjct: 133 PVAANAVLHAYNQWMLDDWGFNYKDRIYSTPVVTL---DDLDAAVAEAKWLVANGVRVIL 189
Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
+P P+ G F + +G
Sbjct: 190 MPMGPFNG---RAPADPYFDPFWSILNEAGVRVT 220
>gi|227503005|ref|ZP_03933054.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
accolens ATCC 49725]
gi|306836762|ref|ZP_07469723.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens
ATCC 49726]
gi|227076066|gb|EEI14029.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
accolens ATCC 49725]
gi|304567349|gb|EFM42953.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens
ATCC 49726]
Length = 289
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 86/303 (28%), Gaps = 71/303 (23%)
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
I PE+++ + + D G T GC L C
Sbjct: 34 EITRPELMEARRTGDIALVHSWELVTAVDGPG--------------TRMTMFMSGCPLRC 79
Query: 129 SFCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
+C+ TGT + V ++ + + P + G + S G +
Sbjct: 80 QYCHNPDTMEMKTGTLERVDDV-----------VKRIKRYKPIFQASGGGLTISGGEPLF 128
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
I V + T+ TSGF+ + R + + L
Sbjct: 129 QIAFTRRV-----LKEVHDAGI-------------HTTIDTSGFLGSRLRDEDLDNIDLV 170
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
+ ++ V + P D + + +V++ G+ DS +
Sbjct: 171 LLDVKSGDEETYQRVTRRQLQPTLDFGDRLNAI-----GKPVWIRFVVVPGLTDSAENVE 225
Query: 301 NLIKILKGIPAK---INLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSG 345
N+ I+ + + ++PF+ ++ +D+ + + G
Sbjct: 226 NVASIVARWKSNVERVEVLPFHNMGKDKWEGLDMTYHLADTKPPKPEDVEKVRDVFRAKG 285
Query: 346 YSS 348
Sbjct: 286 LEV 288
>gi|20807642|ref|NP_622813.1| arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter
tengcongensis MB4]
gi|20516186|gb|AAM24417.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter
tengcongensis MB4]
Length = 469
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T R L+ G + I+ ++ S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGNFKG-------------GRKLMDFETGRKAIDFLIKSSG 142
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
R+ I G GEPL NF+ VK+ + + + T++T+ +
Sbjct: 143 KRRNIEIDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKNIKFTITTNAVLLDDEKIEYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL + V + ++++ + + +
Sbjct: 202 ENFSNVVLSLDGRKEVNDQMRVRADGSGTYDVIVPKIQKFVKARGKKEYYVRGTFTAKNL 261
Query: 294 DSPRDALNLIKI 305
D D L++ +
Sbjct: 262 DFVEDVLHIADL 273
>gi|255324305|ref|ZP_05365426.1| pyruvate formate-lyase 1-activating enzyme [Corynebacterium
tuberculostearicum SK141]
gi|255298635|gb|EET77931.1| pyruvate formate-lyase 1-activating enzyme [Corynebacterium
tuberculostearicum SK141]
Length = 289
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 38/302 (12%), Positives = 83/302 (27%), Gaps = 71/302 (23%)
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
I PE+++ + + D G T GC L C
Sbjct: 35 ITRPELMEARRTGDIALVHSWELVTAVDGPG--------------TRMTMFMSGCPLRCQ 80
Query: 130 FCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
+C+ TGT + V ++ + + P G + S G +
Sbjct: 81 YCHNPDTWEMKTGTLERVEDV-----------VKRIKRYKPIFNASGGGLTISGGEPLFQ 129
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+ V + T+ T+G++ R + + L +
Sbjct: 130 LSFTRRV-----LKEVHDAGI-------------HTTIDTAGYLGARLRDEDLDNIDLVL 171
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
++ V P D + + +V++ + DSP + N
Sbjct: 172 LDVKSGDEETYRKVTQRELQPTLDFGDRLN-----KMGKAVWIRFVVVPDLTDSPENVEN 226
Query: 302 LIKILKGIPAK---INLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGY 346
+ I+ + + ++PF+ ++ +D+ + + G
Sbjct: 227 VANIVARWKSNVERVEVLPFHNMGKDKWDNLGMNYQLADTKPPKPEDVEKIRDVFRSKGL 286
Query: 347 SS 348
Sbjct: 287 EV 288
>gi|311741220|ref|ZP_07715044.1| pyruvate formate-lyase activating enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303390|gb|EFQ79469.1| pyruvate formate-lyase activating enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 289
Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats.
Identities = 38/302 (12%), Positives = 83/302 (27%), Gaps = 71/302 (23%)
Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
I PE+++ + + D G T GC L C
Sbjct: 35 ITRPELMEARRTGDIALVHSWELVTAVDGPG--------------TRMTMFMSGCPLRCQ 80
Query: 130 FCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
+C+ TGT + V ++ + + P G + S G +
Sbjct: 81 YCHNPDTWEMKTGTLERVEDV-----------VKRIKRYKPIFNASGGGLTISGGEPLFQ 129
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+ V + T+ T+G++ R + + L +
Sbjct: 130 LSFTRRV-----LKEVHDAGI-------------HTTIDTAGYLGARLRDEDLDNIDLVL 171
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
++ V P D + + +V++ + DSP + N
Sbjct: 172 LDVKSGDEETYRKVTQRELQPTLDFGDRLN-----KMGKAVWIRFVVVPDLTDSPENVEN 226
Query: 302 LIKILKGIPAK---INLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGY 346
+ I+ + + ++PF+ ++ +D+ + + G
Sbjct: 227 VANIVARWKSNVERVEVLPFHNMGKDKWDNLGMNYQLADTKPPKPEDVEKIRDVFRSKGL 286
Query: 347 SS 348
Sbjct: 287 EV 288
>gi|261868599|ref|YP_003256521.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413931|gb|ACX83302.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 246
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 86/265 (32%), Gaps = 45/265 (16%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
E+ + + Q GC + C +C+ T + +T EE++ +V+ R
Sbjct: 8 HSYESCGTVDGPGIRFILFLQ-GCLMRCKYCHNRDTWDLHGGKEITVEELMKEVVTYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G + + + + D+ G
Sbjct: 67 MNASGGGVTASGGEAILQAEFV--------RDWFRACKA--EGIHTCLDTNGF------- 109
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
++ ++ ++ + L +++ + L+ + K LE Y
Sbjct: 110 ----VRHYDHVIDELIDVTDLVLLDLKELNDKVHQNLIGVPNKRTLE-----FAKYLQKR 160
Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEY--------- 326
N + + YV++ G DS D L + ++G+ K+ L+P++ ++
Sbjct: 161 N-QPVWIRYVVVPGYTDSDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYEL 219
Query: 327 ---LCSDQKDIVTFSECIKRSGYSS 348
++ + ++ G+
Sbjct: 220 EDVKPPTKESLEHIKTILEGYGHIV 244
>gi|226323925|ref|ZP_03799443.1| hypothetical protein COPCOM_01702 [Coprococcus comes ATCC 27758]
gi|225207474|gb|EEG89828.1| hypothetical protein COPCOM_01702 [Coprococcus comes ATCC 27758]
Length = 465
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 75/255 (29%), Gaps = 25/255 (9%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET---------VYIPEKS 112
L + + + E + + +L V +
Sbjct: 45 QTLKEESTWNQLKDELEGKYSEEELRDILDDVTELTANGQLFVVDTYEPFIGEVIKRKTV 104
Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
LC+ C+L C +C+ E R L + + +I
Sbjct: 105 VKALCLHIAHDCNLACKYCFA---------EEGEY-----HGRRALMTYEVGKKALDFLI 150
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIAR 230
+ G + + V GEPL N+ VK ++ + L R T++T+G + I
Sbjct: 151 ANSGTRRNLEVDFFGGEPLMNWQVVKDLVAYGREQEKLHDKHFRFTVTTNGVLLNDEIQE 210
Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
+ + ISL + N K ++++ + N R +
Sbjct: 211 FINKEMDNVVISLDGRKEVNDRMRPFRNGKGSYDLIVPKFQKLADSRNQERYYIRGTFTR 270
Query: 291 GINDSPRDALNLIKI 305
D D + ++
Sbjct: 271 NNLDFSEDVKHFAEL 285
>gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT]
gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT]
Length = 299
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY---------- 326
I ++ G+ND + N K + +NL+P++ +Y
Sbjct: 212 GVPIVIRVPVIPGVNDDEENIRNTAKFAMSLNGVKEVNLLPYHRLGENKYDYLGYEYKMK 271
Query: 327 --LCSDQKDIVTFSECIKRSGYSSPI 350
+I +++ G + I
Sbjct: 272 DLEVPGDDNINKLKSIVEQYGLNCKI 297
>gi|125973423|ref|YP_001037333.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
gi|256004402|ref|ZP_05429383.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
gi|125713648|gb|ABN52140.1| Radical SAM [Clostridium thermocellum ATCC 27405]
gi|255991686|gb|EEU01787.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
gi|316940341|gb|ADU74375.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
Length = 450
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 20/192 (10%)
Query: 117 CVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
C+ C+L C +C+ TG RN+ + E+ G + I+ ++ S
Sbjct: 97 CLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLISES 141
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
RK I G GEP+ NFD VK + A R TL+T+G + +
Sbjct: 142 GNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIKYI 200
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E + +S+ + + I+ + ++ ++ N +
Sbjct: 201 NENMQNIVLSIDGRKEVNDRMRIRIDGSGCYDDILPKFKYVAESRNQDNYYVRGTFTREN 260
Query: 293 NDSPRDALNLIK 304
D D L+L
Sbjct: 261 MDFSNDVLHLAD 272
>gi|256752583|ref|ZP_05493437.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
gi|256748521|gb|EEU61571.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
Length = 461
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T L DF + +I S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGDFKG--------------SRKLMDFETGKKAIDFLIKSS 141
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
G++ + V GEPL NF+ VK+ + + + + T++T+ + +
Sbjct: 142 GKRRNIEVDFFGGEPLLNFEVVKRLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ + +SL ++ + ++ + ++ + + +
Sbjct: 202 KNFSNVVLSLDGRKEVNDSMRIRVDGSGSYDTIVPKIKKFVESRGKKEYYVRGTFTAKNL 261
Query: 294 DSPRDALNLIKI 305
D D L++ +
Sbjct: 262 DFANDVLHIADL 273
>gi|187933399|ref|YP_001885920.1| glycyl-radical enzyme activating protein family [Clostridium
botulinum B str. Eklund 17B]
gi|187721552|gb|ACD22773.1| glycyl-radical enzyme activating protein family [Clostridium
botulinum B str. Eklund 17B]
Length = 313
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 14/148 (9%), Positives = 43/148 (29%), Gaps = 16/148 (10%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+ T+ FV + V A + ++ + + +
Sbjct: 163 NTAVETTAFVDTDIFLEGMKYVDFAFIDIKHMDREKHKEKTGAYNDLI---LKNIKELIN 219
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY-------- 326
+ R+ ++ ND+ +A+ + + INL+PF+ ++
Sbjct: 220 CNWQGRLVIRMPVIHNFNDTVENAMATADFMNDLGIYEINLLPFHRMGDSKWTQLGKKYS 279
Query: 327 ----LCSDQKDIVTFSECIKRSGYSSPI 350
+ ++ + + + +
Sbjct: 280 YRNDEPTSEEKLDELQDVYLDRKIACYV 307
>gi|156051072|ref|XP_001591497.1| hypothetical protein SS1G_06943 [Sclerotinia sclerotiorum 1980]
gi|154704721|gb|EDO04460.1| hypothetical protein SS1G_06943 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 672
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 58/142 (40%), Gaps = 10/142 (7%)
Query: 215 RRITLSTSGF--VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + I+ + ID H
Sbjct: 162 RELCLTTNGLNLARKLDSMVEAGLTGINLSLDTLDPWQFQIMTRRKGFEAVMKSIDKILH 221
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
L ++ V+++G+N+ + + +++ + ++ I + P+ G ++ Q
Sbjct: 222 MNKLGAGIKLKINCVVMRGVNER--EIIPFVELGRDKDVEVRFIEYMPFDGNKW---SQG 276
Query: 333 DIVTFSECI--KRSGYSSPIRT 352
++++ E + R Y +R
Sbjct: 277 KMLSYKEMLDIIRHKYP-TLRK 297
>gi|281417626|ref|ZP_06248646.1| Radical SAM domain protein [Clostridium thermocellum JW20]
gi|281409028|gb|EFB39286.1| Radical SAM domain protein [Clostridium thermocellum JW20]
Length = 450
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 20/192 (10%)
Query: 117 CVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
C+ C+L C +C+ TG RN+ + E+ G + I+ ++ S
Sbjct: 97 CLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLISES 141
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
RK I G GEP+ NFD VK + A R TL+T+G + +
Sbjct: 142 GNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIKYI 200
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E + +S+ + + I+ + ++ ++ N +
Sbjct: 201 NENMQNIVLSIDGRKEVNDRMRIRIDGSGCYDDILPKFKYVAESRNQDNYYVRGTFTREN 260
Query: 293 NDSPRDALNLIK 304
D D L+L
Sbjct: 261 MDFSNDVLHLAD 272
>gi|148265485|ref|YP_001232191.1| radical SAM domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146398985|gb|ABQ27618.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
Length = 313
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 19/228 (8%)
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRK 178
+ C+ +C +C G QV A + + + V G +
Sbjct: 22 TPKVCTYSCVYCQVGRTIKT----------QVDRRAFYWPEEIAAEVENKVRVARENGEQ 71
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
I + + GEP + N+ + + + +G+ + + + S +
Sbjct: 72 IDYLTFVADGEPTLDI-NLAREIELLR-PLGIRIA---VITNASLIWRSDVAEALRKANW 126
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+++ + V D+ L + L+ + + E +++KG+ND+
Sbjct: 127 VSLKVDTVREDVWRKLNRPSPLLEFMDLLTGMIGFAKRYGGE-LATETMLVKGLNDAEEH 185
Query: 299 ALNLIK-ILKGIPAKINL-IPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
L ++ PAK L IP P ++ + + ++R
Sbjct: 186 LELLADFLMALKPAKAYLAIPTRPPAELWVKPPSEETVNRAFQILRRK 233
>gi|330819569|ref|YP_004348431.1| radical SAM domain protein [Burkholderia gladioli BSR3]
gi|327371564|gb|AEA62919.1| radical SAM domain protein [Burkholderia gladioli BSR3]
Length = 357
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 43/260 (16%), Positives = 74/260 (28%), Gaps = 43/260 (16%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + C FC G A + Q+ +AR+ + + P+
Sbjct: 116 TCIRYESR-RKMCQFCSIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPA 174
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ ++I+ D + D + + T G
Sbjct: 175 ASDRGASILCDSAFAIRAAVDLPIQGQCEPPDDDAWFARMKASGIDTLGM---------- 224
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ +R ++P PL +DA + R +L G+ D
Sbjct: 225 -------HLEAVTPAVRERIMPGKASVPLSRYLDAFDAAVAVFG--RGQVSTYILAGLGD 275
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE--------CIKR 343
+P L + + L ++PF P G F +
Sbjct: 276 TPEAILAMSEDLIARGVYPFVVPFVPISGTPLESHPAPSP----AFMREVLVPLGAMLGA 331
Query: 344 SGYSSPIRTPRGLDILAACG 363
+G R DI A CG
Sbjct: 332 AGL-------RSADIKAGCG 344
>gi|312087917|ref|XP_003145659.1| calponin protein 2 [Loa loa]
gi|307759177|gb|EFO18411.1| calponin protein 2 [Loa loa]
Length = 185
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
+ + + D+ +D L ++ + K N +P+NP P + ++I F + IK G
Sbjct: 32 FETAQDVADALKDGTQLCLLMNRLLDKTNALPYNPKPKMPFHK--MENISNFLDAIKAYG 89
Query: 346 YS 347
Sbjct: 90 VP 91
>gi|153953661|ref|YP_001394426.1| NifB1 [Clostridium kluyveri DSM 555]
gi|219854283|ref|YP_002471405.1| hypothetical protein CKR_0940 [Clostridium kluyveri NBRC 12016]
gi|146346542|gb|EDK33078.1| NifB1 [Clostridium kluyveri DSM 555]
gi|219568007|dbj|BAH05991.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 423
Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 45/222 (20%), Positives = 83/222 (37%), Gaps = 37/222 (16%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C+++C+FC + N T + +VL P + ++ + ++ +
Sbjct: 36 KCNVSCNFC--NRKYDCVNETRPGVTSEVL--------TPEKARDKFNIVKDKVKNLTVV 85
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
+ G G+PL NF+ KKS+ + LST+G + I R+G
Sbjct: 86 GIAGPGDPLANFEETKKSIELIKKES----PNITFCLSTNGLMLPFYADEIIRLGV---T 138
Query: 238 MLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACR----------HYPGLSNARRITFEY 286
+ I+++AV + + N + +A Y
Sbjct: 139 HVTITINAVDPKIGAKIYKFVNYLGSVLEGEEAGNVLLNNQLSGLRYIA-QKGIICKVNI 197
Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
VM+KGIN S ++K +K A + N++P P G +
Sbjct: 198 VMIKGINSS--HIPEVVKKVKECGAYMTNIMPLIPVKGSVFE 237
>gi|332364333|gb|EGJ42107.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK355]
Length = 267
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY----- 326
+ ++ + I ++ NDS DA + + + L+PF+ + +Y
Sbjct: 177 HYAFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGR 236
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+D+ + + + G +
Sbjct: 237 KYAMEDVKALHPEDLFEYQDVFLKHGINC 265
>gi|171686210|ref|XP_001908046.1| hypothetical protein [Podospora anserina S mat+]
gi|170943066|emb|CAP68719.1| unnamed protein product [Podospora anserina S mat+]
Length = 709
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + ++ ++ ID
Sbjct: 201 RELCLTTNGLSLHRKLDAMVEAGLTGVNLSLDTLDQWQYQLMTRRAGFSAVQKTIDRIFE 260
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
+ V+++G+ND + L +++ + ++ I + P+ G ++ +
Sbjct: 261 LNRAGAGIKFKINCVVMRGVNDR--EILPFVEMTREKDVEVRFIEYMPFDGNKW---SKG 315
Query: 333 DIVTFSECI 341
+ ++ E +
Sbjct: 316 KMFSYQEML 324
>gi|56413979|ref|YP_151054.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197362902|ref|YP_002142539.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|56128236|gb|AAV77742.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197094379|emb|CAR59893.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 265
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 48 GCLMRCLYC-HNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 106
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + ++
Sbjct: 107 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLDV 142
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 143 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWSDD 196
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ I +
Sbjct: 197 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETIERVKGIL 256
Query: 342 KRSGYSS 348
++ G+
Sbjct: 257 EQYGHKV 263
>gi|326390121|ref|ZP_08211682.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
gi|325993769|gb|EGD52200.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
Length = 461
Score = 40.0 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T L DF + +I S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGDFKG--------------SRKLMDFETGKKAIDFLIKSS 141
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
G++ + V GEPL NF+ VK+ + + + T++T+ + +
Sbjct: 142 GKRQNIEVDFFGGEPLLNFEVVKQLVEYGKQKAKENKKTIKFTITTNAVLLDDEKIKYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL N+ + ++ + ++ + + +
Sbjct: 202 ENFSNVVLSLDGRKEVNDNMRIRVDGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTAKNL 261
Query: 294 DSPRDALNLIKI 305
D D L++ +
Sbjct: 262 DFANDVLHIADL 273
>gi|46562239|ref|YP_009047.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
vulgaris str. Hildenborough]
gi|46447776|gb|AAS94442.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
vulgaris str. Hildenborough]
gi|311235389|gb|ADP88242.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
Length = 514
Score = 40.0 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 29/251 (11%), Positives = 74/251 (29%), Gaps = 37/251 (14%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C +C + + + + P + I
Sbjct: 31 KCNVLCGYCN----------RKYDCVNESRPGVTSGVLTPAQAADYLDRVLEREPAIRVA 80
Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
+ G G+P+ N ++L L ++ + G P++ +
Sbjct: 81 GIAGPGDPMANAAATLETLRLIRQRHPDMLF----CLSSNGLGMPPHLDALAANGVTHAT 136
Query: 241 ISLHAVSNDL----RNILVPINRKYPLEMLIDAC--RHYPGLSN----ARRITFEYVMLK 290
++++AV D+ + + + R L+ + +++
Sbjct: 137 LTINAVDPDISARLYTWVRDGKVVWRGRPAAELMLERQLTALTGLVQRGIVVKVNTILVP 196
Query: 291 GINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRSG 345
GIND + A + + + +N+IP +P + + + + +
Sbjct: 197 GINDGHVEQVAEKVAALGATL---MNIIPLHPTHDTPLAQVAEPSPEAVGE-ARRLAGAH 252
Query: 346 YS--SPIRTPR 354
+ R R
Sbjct: 253 IRQMTHCRRCR 263
>gi|254488854|ref|ZP_05102059.1| elongator protein 3/MiaB/NifB [Roseobacter sp. GAI101]
gi|214045723|gb|EEB86361.1| elongator protein 3/MiaB/NifB [Roseobacter sp. GAI101]
Length = 374
Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats.
Identities = 43/255 (16%), Positives = 76/255 (29%), Gaps = 33/255 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
C+ + TC FC G A + Q+ G + +
Sbjct: 123 TCIRYESR-KKTCKFCAIGQSLAAGRTIAHKTPAQLAEVARAAVLLDGVKHMVMTTGTPA 181
Query: 176 GRKISNIVMMGMGEPLCNFDNV-KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
G+ V+ E + N+ ++ + + + + G
Sbjct: 182 GKDRGAKVLTESAEAIRAAVNLPLQAQCEPPEDDMWHRRMKDAGIDSLGM---------- 231
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ LR ++P + LE D+ + ++ +L G+ D
Sbjct: 232 -------HLEVVTPALREQIMPGKAQVSLEKYFDSFAAAVEVFGWGQV--STYILAGLGD 282
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI---- 350
+ L++ + L I ++PF P G S F G P+
Sbjct: 283 TQEAILSICERLTAIGVYPFVVPFVPVTGTPLE-SHPAPTSAFM-----HGVLGPLSQMI 336
Query: 351 --RTPRGLDILAACG 363
R R DI A CG
Sbjct: 337 VDRGMRAEDIKAGCG 351
>gi|304397064|ref|ZP_07378943.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB]
gi|304355213|gb|EFM19581.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB]
Length = 246
Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats.
Identities = 31/240 (12%), Positives = 72/240 (30%), Gaps = 38/240 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C +C + + + L +L G V S G I
Sbjct: 29 GCLMRCLYC-HNRDTW--DTHGGKEISVEALMADVLSYRHFMNASGGGVTASGGEAILQA 85
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ + + + D+ G + ++ ++ +
Sbjct: 86 EF--VRDWFRACKA--EGIHTCLDTNGFVRRY-----------DPVIDELLDVTDLVMLD 130
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L +++D+ ILV ++ L+ Y R +V++ G +D A L
Sbjct: 131 LKQMNDDVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDDTAHRL 184
Query: 303 IKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
+ + + KI L+P++ ++ ++ + + G+
Sbjct: 185 GEFTRDMQNVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPGKETMERVKNILASYGHEV 244
>gi|320036784|gb|EFW18722.1| molybdenum cofactor biosynthesis protein A [Coccidioides posadasii
str. Silveira]
Length = 704
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + ++ + ID
Sbjct: 172 RELCLTTNGISLHRKLDSMAEAGLTGVNLSLDTLDPFQFQLMTRRKGFEAVMKSIDRILQ 231
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
L ++ V+++G+ND + + +++ + P ++ I + P+ G ++ Q
Sbjct: 232 MNELGARIKLKINCVVMRGLNDR--EIIPFVEMGREKPVEVRFIEYMPFDGNKW---SQG 286
Query: 333 DIVTFSECIK 342
+ + + ++
Sbjct: 287 KMFPYKDMLR 296
>gi|303318088|ref|XP_003069046.1| molybdopterin cofactor biosynthetic protein, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108727|gb|EER26901.1| molybdopterin cofactor biosynthetic protein, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 723
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + ++ + ID
Sbjct: 172 RELCLTTNGISLHRKLDSMAEAGLTGVNLSLDTLDPFQFQLMTRRKGFEAVMKSIDRILQ 231
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
L ++ V+++G+ND + + +++ + P ++ I + P+ G ++ Q
Sbjct: 232 MNELGARIKLKINCVVMRGLNDR--EIIPFVEMGREKPVEVRFIEYMPFDGNKW---SQG 286
Query: 333 DIVTFSECIK 342
+ + + ++
Sbjct: 287 KMFPYKDMLR 296
>gi|167464464|ref|ZP_02329553.1| florfenicol/chloramphenicol resistance protein [Paenibacillus
larvae subsp. larvae BRL-230010]
Length = 52
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
++ L ++ P R QI I+ + I ++ M+ + + +R+
Sbjct: 10 IQHILTELKQPA----YRFQQIADAIFKQKIGEYDRMTILPKGLRNE 52
>gi|323706427|ref|ZP_08117989.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323534212|gb|EGB24001.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 459
Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 18/193 (9%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L CS+C+ T R L+ G + I+ ++ S
Sbjct: 96 ICLNVAHDCNLRCSYCFASTGDFKG-------------GRKLMPYEVGKKAIDFLIKNSG 142
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-- 233
RKI + G GEPL NFD VKK + + + T++T+G + + +
Sbjct: 143 NRKIVEVDFFG-GEPLLNFDVVKKLVDYGREEAKKYGKTIKYTITTNGVLLDEEKATYIN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL + I+ +++ +++ L + + N
Sbjct: 202 ENFSNVVLSLDGRKEINDAMRKRIDGSGSYDVIFPKIKNFV-LKRGNKEHYVRGTFTAKN 260
Query: 294 -DSPRDALNLIKI 305
D D L+L +
Sbjct: 261 LDFSEDVLHLADM 273
>gi|315923970|ref|ZP_07920198.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622810|gb|EFV02763.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
23263]
Length = 464
Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 16/175 (9%)
Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
VY ++C++ C+L C++C+ + R L+ G
Sbjct: 80 PMVYQNYNLIKSMCLNVAHDCNLRCAYCFASQGDFNGD-------------RDLMPLEVG 126
Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK--SLSIASDSMGLSFSKRRITLST 221
+ + +V S R + G GEPL NF VK + + + +T +
Sbjct: 127 KKAFDFLVAQSKNRHNLEVDFFG-GEPLMNFRVVKDLVAYGRSLEKEYNKRFNFTMTTNA 185
Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
R ++ + +SL ++ ++ +++I+ + L
Sbjct: 186 VLLNDENMRWIDDNMNNVVLSLDGRKAVNDHMRKTVSGGGSFDVIIENIKKMAAL 240
>gi|308186250|ref|YP_003930381.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1]
gi|308056760|gb|ADO08932.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1]
Length = 246
Score = 40.0 bits (92), Expect = 0.68, Method: Composition-based stats.
Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 38/240 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C +C + + + L +L G V S G I
Sbjct: 29 GCLMRCLYC-HNRDTW--DTHGGKEISVEALMADVLSYRHFMNASGGGVTASGGEAILQA 85
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ + + + D+ G + ++ ++ I
Sbjct: 86 EF--VRDWFRACKA--EGIHTCLDTNGFVRRY-----------DPVIDELLDVTDLVMID 130
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L +++D+ ILV ++ L+ Y R +V++ G +D A L
Sbjct: 131 LKQMNDDVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDDTAHRL 184
Query: 303 IKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
+ + + KI L+P++ ++ ++ + + G+
Sbjct: 185 GEFTRDMENVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPGKETMERVKNILASYGHEV 244
>gi|330992920|ref|ZP_08316863.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
sp. SXCC-1]
gi|329760074|gb|EGG76575.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
sp. SXCC-1]
Length = 364
Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats.
Identities = 43/283 (15%), Positives = 80/283 (28%), Gaps = 43/283 (15%)
Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
W + ++ I R T +C FC G A +
Sbjct: 106 WKIALLHGRDTLATTVQQTCIRYADRRT-----------SCQFCAIGQSLEADRTIAYKT 154
Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
Q+ + G D+ N+V G + ++ ++ +
Sbjct: 155 PAQLAEVAKAAVELDGVRDMVLTTGTP------NVVDRGAAVLADSARAIRAAVDLPL-- 206
Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
R R+ + L + L A + +R ++P ++ +
Sbjct: 207 QVQCEPPR--------DHDWFQRLRDAGADSLGMHLEAATQAVREKIMPGKATVSVDRYM 258
Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
DA + R +L G+ DS D L L + L + ++PF P G
Sbjct: 259 DAFA--SAVPIFGRGQVNTYILAGLGDSAADILALAERLIALGVYPFVVPFVPISGTPLE 316
Query: 328 ---CSDQKDIVT----FSECIKRSGYSSPIRTPRGLDILAACG 363
+ + ++ + S DI A CG
Sbjct: 317 NHAPPSADFMKSVLAPLGRMLREANMKST-------DIRAGCG 352
>gi|282890405|ref|ZP_06298933.1| hypothetical protein pah_c016o147 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499787|gb|EFB42078.1| hypothetical protein pah_c016o147 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 326
Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats.
Identities = 41/266 (15%), Positives = 87/266 (32%), Gaps = 41/266 (15%)
Query: 55 DISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
++ + + + ++ ++ P I+ + + +K L F +G + + K G
Sbjct: 46 NLPKRLAEKIKKN-TLDDP-ILKQFLPTLAEQKQLAGFTLDPVGDTQFTKAPKLLHKYNG 103
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+ C + C FC +N + + + + +
Sbjct: 104 RALIVCTSACVMNCRFC------FRQNFDY---------------EVQEKGFQKELELIA 142
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ I++ G G+PL D V L A + R T G I
Sbjct: 143 ADETLQEIILSG-GDPLSLSDTVLVHLLDALSHIKHVKRVRFHTRFPIGIPERID----- 196
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
++L + ++ N L+ I + + + V+LKG+ND
Sbjct: 197 ---DAFLNLFENRPFITWFVLHTNHPNELDDHIFH-HLHLLQRKGVILLTQSVLLKGVND 252
Query: 295 SPRDALNLIKILKGIPAKIN--LIPF 318
P L ++ + +N +IP+
Sbjct: 253 CP---KVLCELFNQL---VNRGIIPY 272
>gi|167766973|ref|ZP_02439026.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1]
gi|167710948|gb|EDS21527.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1]
gi|291559683|emb|CBL38483.1| pyruvate formate-lyase 1-activating enzyme [butyrate-producing
bacterium SSC/2]
Length = 244
Score = 39.7 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 32/227 (14%)
Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
+ T+ GC+L C FC+ N E+ P
Sbjct: 10 ESMGLVDGPGIRTVIF--LQGCALRCRFCH--------NPDTWELSG-------GTEYTP 52
Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
+ ++ + G GEPL D +K++L + + G+ I +
Sbjct: 53 EKLVAKIRRFKPYFKEDGGVTFSG-GEPLLQPDFLKETLKLCK-NEGIHT---CIDTAGY 107
Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
G + V+L + ++ + + E ++A + + +I
Sbjct: 108 GLSDYDEILNHTDLVLLDLKHIHKTDYEK---MTGRSMDRFEEFLNALK-----KHQTKI 159
Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL 327
+V++ GI DS L ++ IP K+ L+P++ +Y
Sbjct: 160 WIRHVVVPGITDSEDHMAQLKAYIQTIPNVEKVELLPYHLLGTNKYK 206
>gi|261253301|ref|ZP_05945874.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP
102891]
gi|260936692|gb|EEX92681.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP
102891]
Length = 215
Score = 39.7 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL--------- 327
++ YV++ G D P A L + +K + KI L+P++ ++
Sbjct: 130 GQKTWIRYVVVPGYTDDPEAAHMLGEFIKDMDNIEKIELLPYHKLGAHKWEALGLEYPLE 189
Query: 328 ---CSDQKDIVTFSECIKRSGYSS 348
++ + + +++ +
Sbjct: 190 GTNPPSKEVMDSIVSILEQYHSNV 213
>gi|251780075|ref|ZP_04822995.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243084390|gb|EES50280.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 310
Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 31/242 (12%), Positives = 74/242 (30%), Gaps = 43/242 (17%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEIL--LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
++C C N ++ + + + +L + R+ + V
Sbjct: 92 ISCGKCA-------ENCYPGALVVSGKEMSVKEVLDELNKDSSQF--------RRSNGGV 136
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
+ GEPL + + L G T+ T+G+V V L +
Sbjct: 137 TLSGGEPLLQHEFALEILK------GCKRIGIHTTIETTGYVKKEIFKKIAPWVDLVLLD 190
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
N+ ++I + + + ++ N + ++
Sbjct: 191 IKTLNEDKHIKYVGASNKIILENAKSISELVTST-----IIRVPVIPQFNCDEKSIQDIA 245
Query: 304 KILKGIPAK--INLIPFNPWPGCEYLC-------------SDQKDIVTFSECIKRSGYSS 348
K K + I+L+P++ +Y C ++ ++ F + ++ G +
Sbjct: 246 KFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEEVMLNFKKIVEDIGLTC 305
Query: 349 PI 350
I
Sbjct: 306 NI 307
>gi|229816492|ref|ZP_04446791.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM
13280]
gi|229807827|gb|EEP43630.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM
13280]
Length = 272
Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 34/241 (14%), Positives = 79/241 (32%), Gaps = 44/241 (18%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
IE++ + V +Q GC + C++C T E + LLG+
Sbjct: 22 HSIESMGTVDGPGVRFVVFTQ-GCPMRCAYC-HNPDTW----TTGEGAGTCVSVERLLGE 75
Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS-----------LSIASDSMG 209
+ + + + G GEPL + V + DS G
Sbjct: 76 YESNRPF---------YRTGGLTVTG-GEPLLQPEFVGDLFAAAHAAPAGRIHTCLDSCG 125
Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
+++ ++ ++ E ++L H+ + + + + + D
Sbjct: 126 YAYNPKK--------PERFEKLLSETDMVLLDIKHS--DPVGHKALTGCEPDRIIAFGDE 175
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL--IPFNPWPGCEYL 327
++ +V++ GI D+ + L +++ + L +P++ +Y
Sbjct: 176 LAR-----RKIKVVIRHVVVPGITDTEEECEALGRLIAPWHNVVGLEMLPYHTMGIVKYE 230
Query: 328 C 328
Sbjct: 231 Q 231
>gi|226330724|ref|ZP_03806242.1| hypothetical protein PROPEN_04644 [Proteus penneri ATCC 35198]
gi|225201519|gb|EEG83873.1| hypothetical protein PROPEN_04644 [Proteus penneri ATCC 35198]
Length = 215
Score = 39.7 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 23/150 (15%)
Query: 216 RITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
L T+GFV + + ++ + L V++++ LV ++ + LE
Sbjct: 70 HTCLDTNGFVRRYDPVIDELMDATDLVMLDLKQVNDEIHQKLVGVSNQRTLE-----FAR 124
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY---- 326
Y ++ YV++ G +D A L + +K + K+ L+P++ ++
Sbjct: 125 YLAKR-GQKTWVRYVVVPGWSDDDDSAHRLGEFIKDMKNIEKVELLPYHELGKHKWVALG 183
Query: 327 --------LCSDQKDIVTFSECIKRSGYSS 348
++ + ++ G+
Sbjct: 184 EEYKLDGIHPPSKETMENVKSILESYGHKV 213
>gi|154282419|ref|XP_001542005.1| molybdenum cofactor biosynthesis protein 1 A [Ajellomyces
capsulatus NAm1]
gi|150410185|gb|EDN05573.1| molybdenum cofactor biosynthesis protein 1 A [Ajellomyces
capsulatus NAm1]
Length = 747
Score = 39.7 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 75/231 (32%), Gaps = 28/231 (12%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+L C +C EE + + L +
Sbjct: 59 ISVTERCNLRCLYC-----------MPEEGVELSPAVKILTTPEIIYLSSLFVSQGVTKI 107
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMG--LSFSKRRITLSTSGFV--PNIARVGE 233
+++ GEP V+K + +G R + L+T+G + + E
Sbjct: 108 RLTG------GEPT-----VRKDIVHMMQQIGSLRRDGLRELCLTTNGISLHRKLDSMVE 156
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ +SL + ++ N + I ++ V+++G+N
Sbjct: 157 AGLTGINLSLDTLDPFQFQLMTRRNGLEAVMKSIARILEMNKQGAGIKLKINCVVMRGMN 216
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
D + L +++ + P ++ I + P+ G ++ + I+
Sbjct: 217 DG--EILRFVELGREKPLEVRFIEYMPFDGNKWNQAKMLPYKEMLTIIREK 265
>gi|167037434|ref|YP_001665012.1| radical SAM domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115847|ref|YP_004186006.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856268|gb|ABY94676.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319928938|gb|ADV79623.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 461
Score = 39.7 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T L DF + +I S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGDFKG--------------SRKLMDFETGKKAIDFLIKSS 141
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
G++ + V GEPL NF+ VK+ + + + + T++T+ + +
Sbjct: 142 GKRRNIEVDFFGGEPLLNFEVVKQLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ + +SL ++ + ++ + ++ + + +
Sbjct: 202 KNFSNVVLSLDGRKEVNDSMRIRVDSSGSYDTIVPKIKKFVESRGKKEYYVRGTFTAKNL 261
Query: 294 DSPRDALNLIKI 305
D D L++ +
Sbjct: 262 DFANDVLHIADL 273
>gi|308050261|ref|YP_003913827.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM
9799]
gi|307632451|gb|ADN76753.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM
9799]
Length = 246
Score = 39.7 bits (91), Expect = 0.79, Method: Composition-based stats.
Identities = 31/243 (12%), Positives = 79/243 (32%), Gaps = 44/243 (18%)
Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
GC + C +C+ T + + +T +++ Q++ R G G +
Sbjct: 29 GCLMRCQYCHNRDTWDLEGGKEVTVPQLMEQLVSYRHFFEASGGGVTASGGEAVLQMDFV 88
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
E + + D+ GL + P + + ++ ++
Sbjct: 89 --------KEWFTACKA--EGIHTCLDTNGLIRK----------YTPVVDEM-LDVTDLV 127
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+ + + + + LV ++ K PLE + ++ YV++ G D A
Sbjct: 128 MLDIKQMDDSIHQNLVGVSNKRPLEFAQHLAKR------GQKTWIRYVIVPGFTDDDASA 181
Query: 300 LNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSG 345
L + L + K+ ++P++ ++ ++ + G
Sbjct: 182 EKLAEFLAPMKNVEKVEMLPYHELGKHKWEALGETYPLDGVKPPPKETMERLKAIFVAHG 241
Query: 346 YSS 348
++
Sbjct: 242 LNA 244
>gi|146320554|ref|YP_001200265.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis
98HAH33]
gi|145691360|gb|ABP91865.1| Pyruvate-formate lyase-activating enzyme [Streptococcus suis
98HAH33]
Length = 258
Score = 39.7 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 29/242 (11%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKI 179
GC L C +C + E +L V +++G+ +DI V+ + +
Sbjct: 29 KGCPLRCPWCA---NPESQKRKPEPMLDAVSKKMTIMGEEKSVDDIISEVMKDIDFYEES 85
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+ + GE ++ K++ + + GL + T+ FV + V V
Sbjct: 86 GGGLTLSGGEIFAQYE-FAKAILMEAKRHGL-----HTAIETTAFVEHHKFVDLIQYVDF 139
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+ N + + V + I S + I ++ N+S DA
Sbjct: 140 IYTDLKHYNTISHRKVTGVNNNLIIQNIQ-----YAFSIGKEIVLRIPVIPDFNNSLEDA 194
Query: 300 LNLIKILKGIPA-KINLIPFNPWPGCEYL---CS---------DQKDIVTFSECIKRSGY 346
+ + K+ L+PF+ + +Y + +D+ + +
Sbjct: 195 EQFACLFNQLKIDKVQLLPFHQFGENKYKLLNRTYAMTDVKALHPEDLKDYQAIFIKHNI 254
Query: 347 SS 348
+
Sbjct: 255 NC 256
>gi|310658132|ref|YP_003935853.1| radical sam family protein [Clostridium sticklandii DSM 519]
gi|308824910|emb|CBH20948.1| putative radical SAM family protein [Clostridium sticklandii]
Length = 459
Score = 39.7 bits (91), Expect = 0.84, Method: Composition-based stats.
Identities = 37/217 (17%), Positives = 76/217 (35%), Gaps = 18/217 (8%)
Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
++I+ E +C+ C+L C +C+ A+
Sbjct: 73 SPDNYLDIDAFKNREPVVKAMCLHIAHDCNLKCKYCFASQGDFGG-------------AK 119
Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSF 212
S++ G + +E +V S RK + G GEPL NF+ VK+ + ++ G +F
Sbjct: 120 SIMSFEVGKKALEYLVDNSGSRKNLEVDFFG-GEPLMNFEVVKQLVEYGNELAKEKGKNF 178
Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
IT + I E + +SL + ++ +N K ++++ +
Sbjct: 179 RF-TITTNGVLLDDEIIDYVNEHMHNVVLSLDGRKSINDDMRPTLNDKGSYDIIVPKFQK 237
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
+ + D +D L+ + +
Sbjct: 238 LIEKRKDKYYYVRGTFTRDNMDFSKDVLHFKDLGFDL 274
>gi|289578219|ref|YP_003476846.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
gi|289527932|gb|ADD02284.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
Length = 461
Score = 39.7 bits (91), Expect = 0.87, Method: Composition-based stats.
Identities = 29/192 (15%), Positives = 69/192 (35%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T R L+ G + I+ ++ S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGDFK-------------SGRKLMDFETGKKAIDFLIKSSG 142
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
R+ + G GEPL NF VK+ + + + + T++T+ + +
Sbjct: 143 KRRNIEVDFFG-GEPLLNFKVVKQLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
E + +SL ++ + ++ + ++ + + +
Sbjct: 202 ENFSNVVLSLDGRKEVNDSMRIRVDGNGSYDTIVPKIKKFVESRGKKEYYVRGTFTAKNL 261
Query: 294 DSPRDALNLIKI 305
D +D L++ +
Sbjct: 262 DFTKDVLHIADL 273
>gi|311280182|ref|YP_003942413.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae
SCF1]
gi|308749377|gb|ADO49129.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae
SCF1]
Length = 246
Score = 39.7 bits (91), Expect = 0.91, Method: Composition-based stats.
Identities = 28/244 (11%), Positives = 77/244 (31%), Gaps = 46/244 (18%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T +E++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVDELMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
+ + E + D+ G + E+ +
Sbjct: 88 VRDWFRACRKEG----------IHTCLDTNGFVRRY-----------DPVIDELLEVTDL 126
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ + L +++++ LV ++ ++ ++ + YV++ G +D
Sbjct: 127 VMLDLKQMNDEIHQNLVGVSN----HRTLEFAKYISA--KGIKTWIRYVVVPGWSDDDDS 180
Query: 299 ALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRS 344
A L + + + KI L+P++ ++ ++ + +++
Sbjct: 181 AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQY 240
Query: 345 GYSS 348
G+
Sbjct: 241 GHKV 244
>gi|326533268|dbj|BAJ93606.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 463
Score = 39.7 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
+ I ++T+G V + R+ E L ISL + + + ID
Sbjct: 229 KTIAMTTNGIVLSKKLPRLKECGLNALNISLDTLIPAKFEFMTRRKGHSKVMESIDTAIQ 288
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
+ V+++G+ND + + +++ + P + I F P+ G + + K
Sbjct: 289 L----GYDPVKINCVVMRGMND--DEICDFVELTRHKPINVRFIEFMPFDGNVW---NVK 339
Query: 333 DIVTFSECIKR 343
+V ++E + +
Sbjct: 340 KLVPYAEILDK 350
>gi|261821276|ref|YP_003259382.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium wasabiae
WPP163]
gi|261605289|gb|ACX87775.1| pyruvate formate-lyase activating enzyme [Pectobacterium wasabiae
WPP163]
Length = 246
Score = 39.3 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 86/269 (31%), Gaps = 53/269 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + + Q GC + C +C + +T EE++ +V+ R
Sbjct: 8 HSFESCGTVDGPGIRFIIFFQ-GCLMRCLYC-HNRDTWDTHGGKEVTVEELMKEVVTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + ++ G++
Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRD---------------WFRACKA----EGIN----- 101
Query: 217 ITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
L T+GFV + ++ ++ + L +++D+ LV ++ L+ Y
Sbjct: 102 TCLDTNGFVRRYDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARY 156
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEY----- 326
N +R YV++ G +D A L + K + KI L+P++ ++
Sbjct: 157 LAKRN-QRTWIRYVVVPGWSDDDASAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGE 215
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+ ++ G+
Sbjct: 216 EYKLDGVKPPKADTMDRVKSILESYGHKV 244
>gi|170681252|ref|YP_001744269.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
SMS-3-5]
gi|170518970|gb|ACB17148.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
SMS-3-5]
Length = 246
Score = 39.3 bits (90), Expect = 0.96, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y + ++ YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKD-VKVWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKSIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|88799468|ref|ZP_01115045.1| pyruvate formate-lyase 1 activating enzyme [Reinekea sp. MED297]
gi|88777778|gb|EAR08976.1| pyruvate formate-lyase 1 activating enzyme [Reinekea sp. MED297]
Length = 261
Score = 39.3 bits (90), Expect = 0.97, Method: Composition-based stats.
Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 39/252 (15%)
Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
GT V GC C +C +L ++ + +L + G V
Sbjct: 35 GTRFVVFLQGCLFRCKYC-HNRDTW--DLDGGDLYSVTDMVEKILPFARFMDASGGGVTV 91
Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
+ G + + L + + D+ G G +
Sbjct: 92 TGGEPV----LQAPYVALLFEKLQQHGIHTCLDTNGY-----------VGVYSDEVHQMI 136
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ ++ + + + + ++LV ++ + + RH + R + V++ G +
Sbjct: 137 DHTDLVMLDIKHIDDHKHHLLVGVSN----QRTLRFARHLADIGKKTRARY--VVVPGYS 190
Query: 294 DSPRDALNLIKILKGIP--AKINLIPFN------------PWPGCEYLCSDQKDIVTFSE 339
D P D L + L + + L+P++ +P + +
Sbjct: 191 DEPDDVHALAQFLAPMENIEHVELLPYHNLGTHKWKAMGLEYPLEGLQPPSTESMDEIEG 250
Query: 340 CIKRSGYSSPIR 351
+ G IR
Sbjct: 251 IFRSYGLE-IIR 261
>gi|237730866|ref|ZP_04561347.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2]
gi|291085629|ref|ZP_06353548.2| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae
ATCC 29220]
gi|226906405|gb|EEH92323.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2]
gi|291070473|gb|EFE08582.1| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae
ATCC 29220]
Length = 255
Score = 39.3 bits (90), Expect = 0.99, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T +E++ +V+ R + G G
Sbjct: 38 GCLMRCLYC-HNRDTWDTHGGKEVTVDELMKEVVTYRHFMNASGGGVTASGGEAILQAEF 96
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 97 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 132
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y + ++ YV++ G +D
Sbjct: 133 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FARYLSNKD-IKVWIRYVVVPGWSDD 186
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 187 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 246
Query: 342 KRSGYSS 348
++ G+
Sbjct: 247 EQYGHKV 253
>gi|115397501|ref|XP_001214342.1| molybdenum cofactor biosynthesis protein 1 B [Aspergillus terreus
NIH2624]
gi|114192533|gb|EAU34233.1| molybdenum cofactor biosynthesis protein 1 B [Aspergillus terreus
NIH2624]
Length = 621
Score = 39.3 bits (90), Expect = 0.99, Method: Composition-based stats.
Identities = 32/227 (14%), Positives = 71/227 (31%), Gaps = 20/227 (8%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+L C +C EE + AR L +
Sbjct: 105 ISVTERCNLRCVYC-----------MPEEGVELSPPARLLTSPEIVYLSSLFVSQGVTKI 153
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+++ GEP D V + + + +T + + + E
Sbjct: 154 RLTG------GEPTVRKDIV-PLMQSIGELRRHGLRELCLTTNGISLHRKLEPMVEAGLT 206
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+ +SL + I+ + ID + ++ V+++G+ND
Sbjct: 207 GINLSLDTLDPFQFQIMTRRKGLDAVMKSIDKVLELNKMGAGIKLKINCVVMRGVNDR-- 264
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
+ L +++ + P ++ I + P+ G ++ I+
Sbjct: 265 EILPFVEMGRDSPIEVRFIEYMPFDGNKWNQGKMVSYQEMLAIIREK 311
>gi|313891039|ref|ZP_07824658.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pseudoporcinus SPIN 20026]
gi|313120402|gb|EFR43522.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pseudoporcinus SPIN 20026]
Length = 257
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 27/214 (12%)
Query: 122 VGCSLTCSFCY---TGT----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
GC L C +C + Q L + E + +V ++ + D
Sbjct: 28 KGCPLRCPWCANPESQKKQPEQMLKADGQTYETVGEVKTVDMVIEEVLKDVDFYEESGGG 87
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ I K++ A+ GL + T+ + + V
Sbjct: 88 LTLSGGEIFAQYE---------FAKAILKAAKEKGL-----HTAIETTAYAKHEQFVDLI 133
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
V + N LR+ + + I + + I ++ ND
Sbjct: 134 QYVDFIYTDLKHYNQLRHRKMTGVANELIIKNI-----HYAFEIGKEIVLRIPVIPNFND 188
Query: 295 SPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
S DA ++ + + L+PF+ + +Y
Sbjct: 189 SLEDAQAFSELFNQLQINEVQLLPFHQFGENKYK 222
>gi|154482681|ref|ZP_02025129.1| hypothetical protein EUBVEN_00357 [Eubacterium ventriosum ATCC
27560]
gi|149736457|gb|EDM52343.1| hypothetical protein EUBVEN_00357 [Eubacterium ventriosum ATCC
27560]
Length = 444
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 16/232 (6%)
Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
++E IS K + + I P E + LC+ C+L C +C+
Sbjct: 43 IEEAISEVNQLKEDGQLFTQDIYQPFIEEFKDKRQTVVKALCLHIAHDCNLACKYCFA-- 100
Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
E R + F + ++ + G +++ V GEPL N+D
Sbjct: 101 -------EEGEY-----HGRRAMMSFEVGKKALDFLVANSGSRVNLEVDFFGGEPLMNWD 148
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNI 253
VK+ + + K R TL+T+G + I + + +SL +
Sbjct: 149 VVKQLVEYGRSLEESNHKKFRFTLTTNGVLLNDEIMEYLNKEMSNVVLSLDGRKEVNDRM 208
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
K ++++ + N + D D + +
Sbjct: 209 RPFRTGKGSYDLIVPKFQKLAESRNQSNYYVRGTFTRDNLDFSEDVKHFADL 260
>gi|302339995|ref|YP_003805201.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae
DSM 11293]
gi|301637180|gb|ADK82607.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae
DSM 11293]
Length = 245
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 37/234 (15%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
+ET + + + +Q GC L C +C+ T + + +TA EI+ ++
Sbjct: 9 HSLETCGMVDGPGIRFLIFTQ-GCPLRCLYCHNPDTWKRTGGKEVTAHEIIETARKYKNY 67
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
L G I G + +++ +
Sbjct: 68 LLASGGGITITGGEPLFQADFVQALLLEAKAAGIHT------------------------ 103
Query: 218 TLSTSGFVPNIARVGEEIGVMLAIS-LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
+ TSGF P AR L + + + L + ++ Y L L + + +
Sbjct: 104 AVDTSGFAPPAARKAVLPHADLVLLDIKSAVPALFKKISGVSITYTLATLNE-LKEW--- 159
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC 328
+ +V++ G+ D P DA L +LKG P K+ ++PF+ ++
Sbjct: 160 --NVPVWIRHVVVPGLTDKPEDAEKLAHMLKGYPNIEKVEILPFHKMGEYKWEQ 211
>gi|160901932|ref|YP_001567513.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
gi|160359576|gb|ABX31190.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
Length = 312
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 81/229 (35%), Gaps = 31/229 (13%)
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
C+ +C +C G + N + + +L +F
Sbjct: 26 PKTCNFSCVYCQLGRTTNMTNQR-----QEFFNLQDILEEFKAYIKSGVSQFDF------ 74
Query: 181 NIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
+ ++G GEPL + KS+ D + + + T+G + +V EE+
Sbjct: 75 -VTIVGEGEPLLYSRIGELIKSIKAYVD--------KPVAVITNGALLCEEKVREELNES 125
Query: 239 LAI--SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ +L A + ++ + +D + +I E++M+KG+ND
Sbjct: 126 DLVMPTLDAYDQITFKKINRPHKSISFDSYVDGLISFSKNFKG-KIWMEFMMIKGLNDDE 184
Query: 297 RDALNLIKILKGIPA---KINLIPFNPWPGCEYLC-SDQKDIVTFSECI 341
+ +I I INL P P P +++ +++ I +
Sbjct: 185 ESLRKIKEIFNRISYDRLYINL-PMRP-PAEDWVTVPEKEKIELAQNIL 231
>gi|327311394|ref|YP_004338291.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
768-20]
gi|326947873|gb|AEA12979.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
Length = 253
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 76/237 (32%), Gaps = 28/237 (11%)
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC+ +C +C +R LT L +R+L G +
Sbjct: 19 FQFAGCNFSCPWC-------IRRLTP---WDHHLDSRTLASLRAGGFLSLRAFQEVADKL 68
Query: 179 ISNIVMMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
+S+ GM E + V +L + R +T + + +
Sbjct: 69 VSD----GMEEAVLGGEEPTVDDALPAVIRHLAGRARVRLLTNAYRLTAELLDELRRCAT 124
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ +S+ + + + L + R FE V++ G+N P
Sbjct: 125 CEVVVSIKTLDAEKHREYTGKPLEPVLRNISALVEA------GVRTLFETVLIPGLN-GP 177
Query: 297 RDALNLIKILKGIPAKINLI--PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
+ K L+ LI P P PG + ++++ + ++R+ +R
Sbjct: 178 EGVERIAKYLRENVGDAVLIIDPLIPVPGTGWRRPTEEEL---RDAVERAQRYVAVR 231
>gi|268610260|ref|ZP_06143987.1| radical SAM family protein [Ruminococcus flavefaciens FD-1]
Length = 455
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 35/238 (14%)
Query: 46 GIRDFQGMS----DI---------SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
G+ M+ D+ Q+V L + ++I K L
Sbjct: 20 GVHLVDDMTYDLLDLIQPPFEDECPQQVLDKLTDKYPADEISTCYDEIVELYNDKILFS- 78
Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
E Y +C++ C L C +C+ T +
Sbjct: 79 -----EDDYEKYAKYSVASPVKAMCLNIAHDCQLRCKYCFASTGDFGK------------ 121
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
R L+ G I+ ++ S R + G GEPL NF+ VK+ + A
Sbjct: 122 -GRKLMSLETGKHAIDFLLENSGDRPNLELDFFG-GEPLMNFNVVKQIVEYARSREKEYN 179
Query: 213 SKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
K R T++T+G + + + + +S+ V N + +M++
Sbjct: 180 KKFRFTITTNGLLLDDDKIDFINKEMSNVVLSIDGRKEVNDYFRVLPNGQGCYDMIMP 237
>gi|227111995|ref|ZP_03825651.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 246
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 86/269 (31%), Gaps = 53/269 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + + Q GC + C +C + +T EE++ +V+ R
Sbjct: 8 HSFESCGTVDGPGIRFIIFFQ-GCLMRCLYC-HNRDTWDTHGGKEVTVEELMKEVVTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + ++ G++
Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRD---------------WFRACKA----EGIN----- 101
Query: 217 ITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
L T+GFV + ++ ++ + L +++D+ LV ++ L+ Y
Sbjct: 102 TCLDTNGFVRRYDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARY 156
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEY----- 326
N +R YV++ G +D A L + K + KI L+P++ ++
Sbjct: 157 LAKRN-QRTWIRYVVVPGWSDDDASAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGE 215
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+ ++ G+
Sbjct: 216 EYKLDGVKPPKADTMDRVKSILESYGHKV 244
>gi|300722527|ref|YP_003711817.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila
ATCC 19061]
gi|297629034|emb|CBJ89619.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila
ATCC 19061]
Length = 246
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 36/266 (13%), Positives = 79/266 (29%), Gaps = 47/266 (17%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARS 156
E+ + V Q GC + C +C + +T EE++ + R
Sbjct: 8 HSFESCGTVDGPGIRFIVFFQ-GCLMRCLYC-HNRDTWDTHGGKTVTVEELVKEATTYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + + ++ D+ G
Sbjct: 66 FMNASGGGVTASGGEAILQAEFV--------RDWFRACHA--EGINTCLDTNGFVRRYDS 115
Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
I + ++ + L +++D+ LV ++ LE HY
Sbjct: 116 I-----------IDELLDNTDLVMLDLKQLNDDIHQKLVGVSNHRTLE-----FAHYLAK 159
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY-------- 326
N +R YV++ +D L + K + KI L+P++ ++
Sbjct: 160 RN-QRTWIRYVVVPDWSDDDNSVHLLGEFTKNMKNIEKIELLPYHELGKHKWIAMGEEYK 218
Query: 327 ----LCSDQKDIVTFSECIKRSGYSS 348
++ + + + G+
Sbjct: 219 LDDVHPPSKETMDKVKDILCSYGHHV 244
>gi|121700753|ref|XP_001268641.1| molybdopterin cofactor biosynthetic protein [Aspergillus clavatus
NRRL 1]
gi|119396784|gb|EAW07215.1| molybdopterin cofactor biosynthetic protein [Aspergillus clavatus
NRRL 1]
Length = 698
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + I+ + ++
Sbjct: 171 RELCLTTNGISLHRKLEPMVEAGLTGVNLSLDTLDPFQFQIMTRRKGFEAVMRSVERILA 230
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
++ V+++G+ND + + +++ + P + I + P+ G ++ Q
Sbjct: 231 LNKAGAGIKLKINCVVMRGVNDR--EIIPFVEMGRDSPVGVRFIEYMPFDGNKW---SQG 285
Query: 333 DIVTFSECI--KRSGYSS 348
+ ++ E + R+ Y +
Sbjct: 286 KMFSYQEMLAVIRAKYPT 303
>gi|228949221|ref|ZP_04111488.1| Radical SAM domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228810447|gb|EEM56801.1| Radical SAM domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 468
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 85/252 (33%), Gaps = 22/252 (8%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
+ + E I+ K + + I+ + P + LC++ C+L+C +C+
Sbjct: 60 KELRETIADIEELKRDGKLFTEDDYKDLSIDLINRPTYVKA-LCLNVAHTCNLSCEYCFA 118
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
K N R+++ G I+ ++ S + ++ G GEPL
Sbjct: 119 SQGKYNGN-------------RAIMSYEVGKRAIDFLLENSGNHRNLDVDFFG-GEPLMA 164
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLR 251
+ VK+ ++ A + T +T+G + I + + +SL
Sbjct: 165 WKTVKQIVAYARNKEKEYKKTFHFTFTTNGMLLNDEITDFLNQEMHNVVLSLDGRKKVHD 224
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI----LK 307
+ +N K ++ + + + D D ++ + +
Sbjct: 225 YLRKTVNGKGSYNHIVPKFQEFVEKRGDKEYYVRGTYTHNNVDFTNDIYHIADLGFNKIS 284
Query: 308 GIPAKINLI-PF 318
P N + P+
Sbjct: 285 MEPVICNPLEPY 296
>gi|310779282|ref|YP_003967615.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
gi|309748605|gb|ADO83267.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
Length = 311
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 72/234 (30%), Gaps = 37/234 (15%)
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+L C +C G E + K I
Sbjct: 28 CNLNCIYCECGGNSKT--------------FSERGSYVNLEEVKIELKNALKKIKPDYIT 73
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
G GEP N D + ++ ++ T S + N + + + I
Sbjct: 74 FSGSGEPTLNSD-IGTLITWVKEN----------TDSKVAVITNSTLLHYDEVIEDIIEA 122
Query: 244 HAVSNDL----RNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPR 297
+ L I V +NR + D LS + I E +++G+ND+P
Sbjct: 123 DVIMPSLDAISEEIFVKVNRPHATLRSEDILEGLVKLSEKFKGKILLEIFIVEGVNDTPE 182
Query: 298 DALNLIKILKGIPAKINLIPFNPW--PG-CEY-LCSDQKDIVTFSECIKRSGYS 347
+ + LK + I I N PG ++ + K + E + G +
Sbjct: 183 ELKLFAEFLKKLG--IEAIQLNTLARPGAVDWIQPATFKRLKEIKEYFESFGIN 234
>gi|16759841|ref|NP_455458.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29142386|ref|NP_805728.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|167550356|ref|ZP_02344113.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168230866|ref|ZP_02655924.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168236882|ref|ZP_02661940.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168240823|ref|ZP_02665755.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168263542|ref|ZP_02685515.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168822927|ref|ZP_02834927.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194446466|ref|YP_002040168.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194448873|ref|YP_002044962.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194468500|ref|ZP_03074484.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194735970|ref|YP_002114021.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197248756|ref|YP_002145888.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197263733|ref|ZP_03163807.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|200389762|ref|ZP_03216373.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204930015|ref|ZP_03221036.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|213161616|ref|ZP_03347326.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213417319|ref|ZP_03350463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213424589|ref|ZP_03357372.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213648477|ref|ZP_03378530.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213851463|ref|ZP_03381361.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|238913256|ref|ZP_04657093.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|25285894|pir||AH0612 pyruvate formate-lyase 1 activating enzyme [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502134|emb|CAD05370.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138016|gb|AAO69577.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|194405129|gb|ACF65351.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194407177|gb|ACF67396.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194454864|gb|EDX43703.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194711472|gb|ACF90693.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197212459|gb|ACH49856.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197241988|gb|EDY24608.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197290138|gb|EDY29495.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|199602207|gb|EDZ00753.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204321009|gb|EDZ06210.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205324549|gb|EDZ12388.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205334729|gb|EDZ21493.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205339962|gb|EDZ26726.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205340734|gb|EDZ27498.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205347768|gb|EDZ34399.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|322616401|gb|EFY13310.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322619651|gb|EFY16526.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322622653|gb|EFY19498.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322629802|gb|EFY26577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322632476|gb|EFY29222.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322637029|gb|EFY33732.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322641610|gb|EFY38247.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646103|gb|EFY42619.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649595|gb|EFY46026.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654103|gb|EFY50426.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658635|gb|EFY54897.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663492|gb|EFY59694.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322670228|gb|EFY66368.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322671464|gb|EFY67586.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322676820|gb|EFY72887.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682745|gb|EFY78764.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322686424|gb|EFY82406.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323195947|gb|EFZ81114.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323199765|gb|EFZ84854.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202758|gb|EFZ87794.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323209029|gb|EFZ93966.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323211505|gb|EFZ96344.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323218010|gb|EGA02725.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323219918|gb|EGA04394.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323226858|gb|EGA11041.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323229812|gb|EGA13935.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233037|gb|EGA17133.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240772|gb|EGA24814.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323243088|gb|EGA27109.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323249749|gb|EGA33651.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252778|gb|EGA36616.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323255845|gb|EGA39592.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323260015|gb|EGA43643.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267984|gb|EGA51463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269831|gb|EGA53280.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
Length = 265
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 48 GCLMRCLYC-HNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 106
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + ++
Sbjct: 107 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLDV 142
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 143 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWSDD 196
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 197 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 256
Query: 342 KRSGYSS 348
++ G+
Sbjct: 257 EQYGHKV 263
>gi|146318359|ref|YP_001198071.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis
05ZYH33]
gi|223932440|ref|ZP_03624442.1| glycyl-radical enzyme activating protein family [Streptococcus suis
89/1591]
gi|253751509|ref|YP_003024650.1| pyruvate formate-lyase activating enzyme [Streptococcus suis SC84]
gi|253753410|ref|YP_003026551.1| pyruvate formate-lyase activating enzyme [Streptococcus suis P1/7]
gi|253755761|ref|YP_003028901.1| pyruvate formate-lyase activating enzyme [Streptococcus suis BM407]
gi|302023649|ref|ZP_07248860.1| pyruvate formate-lyase activating enzyme [Streptococcus suis
05HAS68]
gi|330832668|ref|YP_004401493.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis ST3]
gi|145689165|gb|ABP89671.1| Pyruvate-formate lyase-activating enzyme [Streptococcus suis
05ZYH33]
gi|223898894|gb|EEF65253.1| glycyl-radical enzyme activating protein family [Streptococcus suis
89/1591]
gi|251815798|emb|CAZ51405.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
suis SC84]
gi|251818225|emb|CAZ56028.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
suis BM407]
gi|251819656|emb|CAR45423.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
suis P1/7]
gi|292558152|gb|ADE31153.1| Radical SAM [Streptococcus suis GZ1]
gi|319757938|gb|ADV69880.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis JS14]
gi|329306891|gb|AEB81307.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis ST3]
Length = 258
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 29/242 (11%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKI 179
GC L C +C + E +L V +++G+ +DI V+ + +
Sbjct: 29 KGCPLRCPWCA---NPESQKRKPEPMLDAVSKKMTIMGEEKSVDDIISEVMKDIDFYEES 85
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+ + GE ++ K++ + + GL + T+ FV + V V
Sbjct: 86 GGGLTLSGGEIFAQYE-FAKAILMEAKRHGL-----HTAIETTAFVEHHKFVDLIQYVDF 139
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+ N + + V + I S + I ++ N+S DA
Sbjct: 140 IYTDLKHYNTISHRKVTGVNNNLIIQNIQ-----YAFSIGKEIVLRIPVIPDFNNSLEDA 194
Query: 300 LNLIKILKGIPA-KINLIPFNPWPGCEYL---CS---------DQKDIVTFSECIKRSGY 346
+ + K+ L+PF+ + +Y + +D+ + +
Sbjct: 195 EQFACLFNQLKIDKVQLLPFHQFGENKYKLLNRTYAMTDVKALHPEDLKDYQAIFIKHNI 254
Query: 347 SS 348
+
Sbjct: 255 NC 256
>gi|315452871|ref|YP_004073141.1| putative radical SAM domain-containing protein [Helicobacter felis
ATCC 49179]
gi|315131923|emb|CBY82551.1| Putative radical SAM domain protein [Helicobacter felis ATCC 49179]
Length = 304
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 68/189 (35%), Gaps = 17/189 (8%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C+ C +C +L + +++ QV+ +LL + + +
Sbjct: 27 KQCNFNCIYC-----ELKAHKPIDKM-EQVIPLSTLLD------AVHSALQTHKNTPLDV 74
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
+ GEP + ++ ++ GL I + S F + ++
Sbjct: 75 LTTTANGEPTL-YPHLYDFITQLKTPPGLKT---LILSNGSRFANLQVQEALMHYDIVKF 130
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
SL A + +++ LE L++ + I E +++KG+NDS +
Sbjct: 131 SLDAALPKAFAKVDKPSKQIHLEQLLEGIADFSARYAGMLIA-EVLLVKGVNDSLENIQA 189
Query: 302 LIKILKGIP 310
++ L+ +
Sbjct: 190 IVDFLRPLK 198
>gi|255305100|ref|ZP_05349272.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile ATCC 43255]
Length = 316
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 41/311 (13%), Positives = 82/311 (26%), Gaps = 38/311 (12%)
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + + D + P E TV C + GC++
Sbjct: 11 IFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP-ESWTVRPHMMFSELSCQY-ENGCTV 68
Query: 127 TCSFCYTGTQKLV------------RNLTAEEILLQVLLARSLLGDFPGCEDIEGM--VI 172
C G ++ + E + L P D
Sbjct: 69 CHGKCKNGALSFNLDNKPVIDWNICKDCESFECVNSCYYNAFKLCAKPYTVDELVQVIKR 128
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S + + V GEPL + + + L + I S ++
Sbjct: 129 DSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVN----IHTAIETSACVSNEVFNKIF 184
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+I H + ++ + I R+ ++ G
Sbjct: 185 NDIDFAFIDIKH--MDREKHKEQTGVYNDLILENISNL---ANSDWNGRLVLRVPVISGF 239
Query: 293 NDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSE 339
NDS + ++I K +INL+PF+ +++ D+ + +
Sbjct: 240 NDSVENISDIISFMHKNNLVEINLLPFHRLGESKWIQLGKEYEYSDKGDVDEGHLEELQD 299
Query: 340 CIKRSGYSSPI 350
+G + +
Sbjct: 300 IFLDNGIACYV 310
>gi|167766768|ref|ZP_02438821.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1]
gi|167711522|gb|EDS22101.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1]
Length = 458
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 16/190 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ + R+L+ G + ++ +V S
Sbjct: 95 CLHIAHDCNLACRYCFAEEGEYKGR-------------RALMSAEVGKKALDFLVENSGN 141
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
R+ + G GEPL NFD VK+ ++ K R TL+T+G + +I +
Sbjct: 142 RRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFANK 200
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +S+ + N K + +ID + + N ++ D
Sbjct: 201 EMDNVVLSVDGRKEVHDYMRPFRNGKGSYDFIIDKFKKFADSRNQQKYYVRGTFTHHNLD 260
Query: 295 SPRDALNLIK 304
+D ++L
Sbjct: 261 FSKDVMHLAD 270
>gi|322382440|ref|ZP_08056337.1| coenzyme PQQ synthesis-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153584|gb|EFX45970.1| coenzyme PQQ synthesis-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 439
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 38/269 (14%), Positives = 90/269 (33%), Gaps = 46/269 (17%)
Query: 44 VRGIRDFQGMSDIS-QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE 102
+ + D S+IS +++R + I + + E
Sbjct: 20 EKYVHD----SNISEKDIRETIAD---IEELK------------------NDGELFTEDE 54
Query: 103 IETVYIPEKSRGTL----CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
+ + + K+R T C++ C+L+C +C+ K + R+++
Sbjct: 55 YKNLSMDLKNRQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIM 101
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
G I+ ++ S + ++ G GEPL + VK+ ++ A R T
Sbjct: 102 SYEVGKRAIDYLLENSGHHRNLDVDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFT 160
Query: 219 LSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
+T+G + + E + +SL ++ + K + ++ + +
Sbjct: 161 FTTNGMLLNDEVTDFLNEEMYNVVLSLDGRKQVHDHLRKTVTGKGSYDYIVPKFQEFVEK 220
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKI 305
+ + D D ++ +
Sbjct: 221 RGDKEYYVRGTYTRNNVDFTNDIFHIADL 249
>gi|291560706|emb|CBL39506.1| Arylsulfatase regulator (Fe-S oxidoreductase) [butyrate-producing
bacterium SSC/2]
Length = 458
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 16/190 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ + R+L+ G + ++ +V S
Sbjct: 95 CLHIAHDCNLACRYCFAEEGEYKGR-------------RALMSAEVGKKALDFLVENSGN 141
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
R+ + G GEPL NFD VK+ ++ K R TL+T+G + +I +
Sbjct: 142 RRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFANK 200
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +S+ + N K + +ID + + N ++ D
Sbjct: 201 EMDNVVLSVDGRKEVHDYMRPFRNGKGSYDFVIDKFKKFADSRNQQKYYVRGTFTHHNLD 260
Query: 295 SPRDALNLIK 304
+D ++L
Sbjct: 261 FSKDVMHLAD 270
>gi|317499049|ref|ZP_07957330.1| radical SAM superfamily protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|316893699|gb|EFV15900.1| radical SAM superfamily protein [Lachnospiraceae bacterium
5_1_63FAA]
Length = 458
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 16/190 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ + R+L+ G + ++ +V S
Sbjct: 95 CLHIAHDCNLACRYCFAEEGEYKGR-------------RALMSAEVGKKALDFLVENSGN 141
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
R+ + G GEPL NFD VK+ ++ K R TL+T+G + +I +
Sbjct: 142 RRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFANK 200
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +S+ + N K + +ID + + N ++ D
Sbjct: 201 EMDNVVLSVDGRKEVHDYMRPFRNGKGSYDFVIDKFKKFADSRNQQKYYVRGTFTHHNLD 260
Query: 295 SPRDALNLIK 304
+D ++L
Sbjct: 261 FSKDVMHLAD 270
>gi|225377733|ref|ZP_03754954.1| hypothetical protein ROSEINA2194_03384 [Roseburia inulinivorans DSM
16841]
gi|225210410|gb|EEG92764.1| hypothetical protein ROSEINA2194_03384 [Roseburia inulinivorans DSM
16841]
Length = 458
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L F + +I + G
Sbjct: 102 CLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSFETGKKALDFLIANSG 147
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ + V GEPL N+ VK ++ + + R TL+T+G + I +
Sbjct: 148 NRRNLEVDFFGGEPLMNWQVVKDLVAYGREQEKIHNKNFRFTLTTNGVLLNDEIMEFANK 207
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +S+ ++ ++++ + + N + D
Sbjct: 208 EMGNVVLSIDGRKEVHDHMRPFRKGAGSYDLIVPKFQKFADSRNQDKYYVRGTFTHNNLD 267
Query: 295 SPRDALNLIKI 305
D L+L +
Sbjct: 268 FSNDVLHLADL 278
>gi|239813579|ref|YP_002942489.1| radical SAM protein [Variovorax paradoxus S110]
gi|239800156|gb|ACS17223.1| Radical SAM domain protein [Variovorax paradoxus S110]
Length = 360
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 37/252 (14%), Positives = 75/252 (29%), Gaps = 27/252 (10%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + +C FC G A + Q+ +AR+ + + P+
Sbjct: 115 SCIRYESR-KKSCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVMTTGTPN 173
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D + D + + T G
Sbjct: 174 ATDRGAAILCESAFAIKAAVDLPIQGQCEPPDDDQWFHRMKAAGIDTLGM---------- 223
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ ++R ++P P+ + A + R +L G+ D
Sbjct: 224 -------HLEVVTPEVRERIMPGKASVPVSRYMSAFEAAVRVFG--RGQVSTYILAGLGD 274
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
+ L+ L ++PF P G + + + + ++ +R
Sbjct: 275 TREAILDTCDQLLARGVYPFVVPFVPISGTPLEDHPAPSPEFMKSLLAPLGERVVAAGLR 334
Query: 352 TPRGLDILAACG 363
+ DI A CG
Sbjct: 335 S---ADIKAGCG 343
>gi|167462543|ref|ZP_02327632.1| Radical SAM domain protein [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 422
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 38/269 (14%), Positives = 90/269 (33%), Gaps = 46/269 (17%)
Query: 44 VRGIRDFQGMSDIS-QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE 102
+ + D S+IS +++R + I + + E
Sbjct: 3 EKYVHD----SNISEKDIRETIAD---IEELK------------------NDGELFTEDE 37
Query: 103 IETVYIPEKSRGTL----CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
+ + + K+R T C++ C+L+C +C+ K + R+++
Sbjct: 38 YKNLSMDLKNRQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIM 84
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
G I+ ++ S + ++ G GEPL + VK+ ++ A R T
Sbjct: 85 SYEVGKRAIDYLLENSGHHRNLDVDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFT 143
Query: 219 LSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
+T+G + + E + +SL ++ + K + ++ + +
Sbjct: 144 FTTNGMLLNDEVTDFLNEEMYNVVLSLDGRKQVHDHLRKTVTGKGSYDYIVPKFQEFVEK 203
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKI 305
+ + D D ++ +
Sbjct: 204 RGDKEYYVRGTYTRNNVDFTNDIFHIADL 232
>gi|161353606|ref|NP_459945.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|162139598|ref|YP_215911.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|168466557|ref|ZP_02700419.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|198246171|ref|YP_002214893.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|224582779|ref|YP_002636577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|195630908|gb|EDX49494.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197940687|gb|ACH78020.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|224467306|gb|ACN45136.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|267992705|gb|ACY87590.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|312911957|dbj|BAJ35931.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321223293|gb|EFX48362.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322713963|gb|EFZ05534.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|326622646|gb|EGE28991.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
Length = 265
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 48 GCLMRCLYC-HNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 106
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + ++
Sbjct: 107 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLDV 142
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 143 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWSDD 196
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 197 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 256
Query: 342 KRSGYSS 348
++ G+
Sbjct: 257 EQYGHKV 263
>gi|145341975|ref|XP_001416074.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576298|gb|ABO94366.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 50/282 (17%)
Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQV 151
+ G V + G C+ GC C+FC + L + +
Sbjct: 63 GAVTGRVHSIDTFTAVDGHGIRCIVFLQGCEKRCAFCCNVDSTHAALAKTPNPGRTMSVN 122
Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
+ L + EG + G GE L ++++I + +GL+
Sbjct: 123 DIVEILKRNRKYYASSEGGGLTLSG-----------GECLL-QPAFVEAVAIKTHEIGLT 170
Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
+ I + SG RV + V+L + + I R+Y + R
Sbjct: 171 VA---IDTAASGDAETWNRVLPHVDVVLLCVKSSSLEKYKAITGTTEREY------ETMR 221
Query: 272 HYPGLSNARRI--TFEYVMLKG---------INDSPRDALNLIKILKGIPAK--INLIPF 318
+ N RR+ +V++ ND L ++ K I L+P+
Sbjct: 222 AFLKELNRRRVKTWLRFVLMSDPDSRFVDFRTNDENE-LRGLAELAKTHECVEGIELLPY 280
Query: 319 NPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
+ + ++ D ++I ++ G +
Sbjct: 281 HRFGEFKFSELGLEYKLEGMRTPDAEEIHAAQTFLQSQGVTV 322
>gi|116207734|ref|XP_001229676.1| hypothetical protein CHGG_03160 [Chaetomium globosum CBS 148.51]
gi|88183757|gb|EAQ91225.1| hypothetical protein CHGG_03160 [Chaetomium globosum CBS 148.51]
Length = 677
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + ++ ++ ID
Sbjct: 175 RELCLTTNGLSLHRKLEPMVEAGLTGVNLSLDTLDPWQFQLMTRRAGFNAVQKTIDRIFE 234
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
+ + V+++G+ND + L +++ + ++ I + P+ G ++ ++
Sbjct: 235 LNRVGAGIKFKINCVVMRGLNDR--EILPFVELTREKDVEVRFIEYMPFDGNKW---NEG 289
Query: 333 DIVTFSECI 341
+ ++ E +
Sbjct: 290 KMFSYQEML 298
>gi|156934609|ref|YP_001438525.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter sakazakii
ATCC BAA-894]
gi|156532863|gb|ABU77689.1| hypothetical protein ESA_02443 [Cronobacter sakazakii ATCC BAA-894]
Length = 246
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 32/247 (12%), Positives = 82/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T EE++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ ++ ++ + YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSN----HRTLEFAKYISA--KGIKTWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|319943185|ref|ZP_08017468.1| pyruvate formate-lyase activating enzyme [Lautropia mirabilis ATCC
51599]
gi|319743727|gb|EFV96131.1| pyruvate formate-lyase activating enzyme [Lautropia mirabilis ATCC
51599]
Length = 273
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 35/281 (12%), Positives = 80/281 (28%), Gaps = 49/281 (17%)
Query: 91 RFPARCIGGP--VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG-----TQKLVRNLT 143
G IE+ + + Q GC + C +C+ R +T
Sbjct: 21 HLHRGYHGTGLVHSIESCGTVDGPGLRYVLFLQ-GCLMRCLYCHNRDTWDLQSDKAREMT 79
Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
E++ QV+ R L G G + + + +
Sbjct: 80 VPEVMKQVMSYRHYLKATGGGVTATGGEPLLQYEFVRDWFVACHQNG----------IHT 129
Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
D+ G + + + ++ + L + D+ +LV I L
Sbjct: 130 CLDTNGYAL-----------HYDEVLETLLDHTDLVMLDLKQIDPDIHRVLVGIPNTRTL 178
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPW 321
R ++ YV++ G D R A L + + + + ++P++
Sbjct: 179 AFAQHLARR------KQKTRVRYVVVPGYTDDDRSAHLLGRFIAPMDNVDTVEILPYHEL 232
Query: 322 PGCEY------------LCSDQKDIVTFSECIKRSGYSSPI 350
++ ++ + ++ G + +
Sbjct: 233 GAHKWALCGDDYKLKGVHPPPKETVQRVRSILEGYGKAVIV 273
>gi|291166144|gb|EFE28190.1| radical SAM domain protein [Filifactor alocis ATCC 35896]
Length = 462
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 16/192 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C+ C+L C +C+ K + L F + +I
Sbjct: 99 MCLHVAHTCNLACDYCFAKQGK--------------YHGKDGLMSFEVGKKALDFLIEHS 144
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
G + + V GEPL N++ VK+ ++ K R TL+T+G + I
Sbjct: 145 GTRTNLEVDFFGGEPLMNWEVVKQLVAYGRSQEKEKKKKFRFTLTTNGVLLDDEIIEFAN 204
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ + +SL + K ++++ + + N
Sbjct: 205 KEMYNVVLSLDGRKEIHDRFRKNLAGKGSYDLIVPKFQKFTKSRNDAGYYVRGTYTHHNV 264
Query: 294 DSPRDALNLIKI 305
D D ++ +
Sbjct: 265 DFTEDIFHMSDL 276
>gi|317491449|ref|ZP_07949885.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920996|gb|EFV42319.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 246
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGTEITVEDLMKDVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + ++
Sbjct: 88 VRD---------------WFRACK----EEGI-----HTCLDTNGFVRRYDPVIDELLDV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++D+ LV ++ LE Y N ++ YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDDIHQNLVGVSNHRTLE-----FARYLAKRN-QKTWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L K + KI L+P++ ++ + + +
Sbjct: 178 DASAHLLGDFTKDMTNVEKIELLPYHELGKHKWEAMGEEYKLGGVKPPSHETMERVKNIL 237
Query: 342 KRSGYSS 348
+ G+
Sbjct: 238 ESYGHKV 244
>gi|146311079|ref|YP_001176153.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter sp. 638]
gi|145317955|gb|ABP60102.1| pyruvate formate-lyase activating enzyme [Enterobacter sp. 638]
Length = 246
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 30/244 (12%), Positives = 78/244 (31%), Gaps = 46/244 (18%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T EE++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
+ + E + D+ G + E+ +
Sbjct: 88 VRDWFRACRKEG----------IHTCLDTNGFVRRY-----------DPVIDELLEVTDL 126
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ + L +++++ LV ++ ++ ++ G + YV++ G +D
Sbjct: 127 VMLDLKQMNDEIHQNLVGVSN----HRTLEFAKYIAG--KGIKTWIRYVVVPGWSDDDDS 180
Query: 299 ALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRS 344
A L + + + KI L+P++ ++ ++ + +++
Sbjct: 181 AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQY 240
Query: 345 GYSS 348
G+
Sbjct: 241 GHKV 244
>gi|221111831|ref|XP_002167227.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 802
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+L C +C L+ N D E++ + V
Sbjct: 111 ISLTERCNLRCGYCMPEEGVLLTN----------------KDDLLTNEEMIRLARLFVFE 154
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
++ I + G GEPL V+K + D + + + ++T+G V + +
Sbjct: 155 GVNKIRLTG-GEPL-----VRKDIVQICDQLSSLKGLKTLAITTNGLVAEQKLLYLKQAG 208
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+ +++ ++ + I+R+ L + +A L + V++KG+ND
Sbjct: 209 LTNVNI-SLDTMIEKKFEFISRRKGLTKVFNAIEKAIEL-KFNSVKINCVVMKGLND--D 264
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
+ + + + P + I + P+ G ++
Sbjct: 265 ELIEFVNFTQNKPVDVRFIEYMPFDGNKWAP 295
>gi|167462221|ref|ZP_02327310.1| hypothetical protein Plarl_06640 [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 247
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 41/242 (16%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEI-LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC+L C FC+ N + +V+ +L +
Sbjct: 27 GCALQCQFCH--------NADTWDTGGGKVMEVEEILAEIESYLPYYRSSNG-------G 71
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
I + G GEP V + + TL +SGF L +
Sbjct: 72 ITVTG-GEPTLQAHFVAELFKACKS-----RFQLHTTLDSSGFCEIDNVQDLMDVTDLVL 125
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
+ + ++I + + + ++ +V++ G+ D+ D
Sbjct: 126 LDLKIIDREKHIRLTSQPNDRILKTAKWLSDHDK-----KMWIRHVLIPGVTDAEEDLRK 180
Query: 302 LIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSECIKRSGYS 347
L + + + K ++P++ G EY ++++ + + S
Sbjct: 181 LGEFMGTLKGIEKFEILPYHQMGVYKWEMLGREYPLKGVESPTEEEVQRAYAIVNEARES 240
Query: 348 SP 349
Sbjct: 241 VT 242
>gi|260597299|ref|YP_003209870.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter turicensis
z3032]
gi|260216476|emb|CBA29623.1| Pyruvate formate-lyase 1-activating enzyme [Cronobacter turicensis
z3032]
Length = 246
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 32/247 (12%), Positives = 82/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T EE++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ ++ ++ + YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSN----HRTLEFAKYISA--KGIKTWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|170746695|ref|YP_001752955.1| radical SAM domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170653217|gb|ACB22272.1| Radical SAM domain protein [Methylobacterium radiotolerans JCM
2831]
Length = 367
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 45/252 (17%), Positives = 78/252 (30%), Gaps = 27/252 (10%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ Q + TC FC G A + Q+ +AR+ + + P+
Sbjct: 121 TCIRYQSR-AKTCQFCSIGQSLAAGRTVARKTPEQLAEVARAAVLLDGVKHMVMTTGTPN 179
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D ++ D R + G
Sbjct: 180 ATDRGAAILCESAFAVKAAVDLPIQAQCEPPDDDRWFERMRASGVDALGM---------- 229
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L AV+ ++R ++P PLE DA + R +L G+ D
Sbjct: 230 -------HLEAVTPEVRARIMPGKASVPLERYFDAFAA--AVPVFGRGQVSTYILAGLGD 280
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
+P L L G+ ++PF P G + + + + +R
Sbjct: 281 APDAILATADRLIGMGVYPFVVPFVPISGTPLESHPAPGPDFMHAVLKPLAEMLGRADLR 340
Query: 352 TPRGLDILAACG 363
+ DI A CG
Sbjct: 341 S---ADIKAGCG 349
>gi|75759721|ref|ZP_00739802.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|228904932|ref|ZP_04068985.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222]
gi|74492798|gb|EAO55933.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|228854707|gb|EEM99312.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222]
Length = 468
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 17/234 (7%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
+ + E I+ K + + I+ + P + LC++ C+L+C +C+
Sbjct: 60 KEIRETIADIEELKRDGKLFTEDDYRDLSIDLINRPTYVKA-LCLNVAHTCNLSCEYCFA 118
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
K N R+++ G I+ ++ S + ++ G GEPL
Sbjct: 119 SQGKYNGN-------------RAIMSFEVGKRAIDFLLENSGNHRNLDVDFFG-GEPLMA 164
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLR 251
+ VK+ ++ A + R T +T+G + I + + +SL
Sbjct: 165 WKTVKQIVAYARNKEKEYKKTFRFTFTTNGMLLNDEITEFLNQEMHNVVLSLDGRKKVHD 224
Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ +N K ++ + + + D D ++ +
Sbjct: 225 YLRKTVNGKGSYNHIVPKFQEFVEKRGDKEYYVRGTYTHNNVDFTNDIYHIADL 278
>gi|302871247|ref|YP_003839883.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
gi|302574106|gb|ADL41897.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
Length = 453
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 27/260 (10%)
Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
++ + +C+ C L C +C+ + +
Sbjct: 73 SEDNYKDMNLIEKRNPVIKAMCLHVAHDCDLRCRYCFASSGSFKQ--------------E 118
Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
L F + ++ + G + + V GEPL NFD VKK + A + K
Sbjct: 119 RKLMSFDVGKKAIDFLLQNSGSRQNLEVDFFGGEPLLNFDVVKKIVEYAREEEKKYNKKI 178
Query: 216 RITLSTSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
TL+T+ +I + + +S + + N + + +
Sbjct: 179 SFTLTTNATNLSDDIIEYLNQNIENVVLSHDGRPQVNDFMRIDRNGNGTYSKITNNILRF 238
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW---PGCEY--LC 328
N + D +D L+L + I P +
Sbjct: 239 IQKRNGKTYYVRGTFTAKNLDFSKDVLHLYSLGIKE------ISVEPVVLDKSSPWAIRE 292
Query: 329 SDQKDIVTFSECIKRSGYSS 348
S + I + + ++
Sbjct: 293 SHIERIKEEYDILAEEYINA 312
>gi|167770639|ref|ZP_02442692.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM
17241]
gi|167667234|gb|EDS11364.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM
17241]
Length = 457
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 80/254 (31%), Gaps = 25/254 (9%)
Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
+E L+ ++ E +I+ L + +
Sbjct: 46 PKEAVECLSNCWTPEEIEETYAEITALRQADQLFSSDDYGRFAKMMTPAPVK------AM 99
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E + R L+ G I+ ++ S G
Sbjct: 100 CLHIAHDCNLRCKYCFA---------DTGEYMGH----RELMSPETGRAAIDYLIDHSAG 146
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
R + + G GEPL NF+ V++ + A R T++T+G + + +
Sbjct: 147 RHNLEVDLFG-GEPLMNFETVREVVRYARSLEKKHGKLFRFTITTNGILLDDDKIDFINQ 205
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI--TFEYVMLKGI 292
+ +S+ + ++ + ++ + L +
Sbjct: 206 EMSNVVLSIDGRREVNDRVRSRVDGTGSYDRIVPNFQKLVRLRKQGPYNQYYARGTFTKY 265
Query: 293 N-DSPRDALNLIKI 305
N D D L+L +
Sbjct: 266 NKDFAEDVLHLSGL 279
>gi|210060915|pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With
Partially Disordered Adomet
gi|210060916|pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex
With Adomet And A Peptide Substrate
Length = 245
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 28 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 86
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 87 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 122
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 123 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 176
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 177 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 236
Query: 342 KRSGYSS 348
++ G+
Sbjct: 237 EQYGHKV 243
>gi|283784729|ref|YP_003364594.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium
ICC168]
gi|282948183|emb|CBG87750.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium
ICC168]
Length = 246
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 82/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T EE++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N + YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQHLVGVSNHRTLE-----FAQYLAKKNVN-VWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|296134437|ref|YP_003641684.1| Radical SAM domain protein [Thermincola sp. JR]
gi|296033015|gb|ADG83783.1| Radical SAM domain protein [Thermincola potens JR]
Length = 461
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 18/202 (8%)
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+LC+ C+L C +C+ GT L F + ++ S
Sbjct: 99 SLCLHVAHDCNLRCKYCFAGTGHFGG--------------EKGLMPFEVGKAAIDFLVQS 144
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
R+ + GEPL N D VK+ + + + + TL+T+ I
Sbjct: 145 SQRRKHCEIDFFGGEPLLNMDVVKQIVHYGREQGAKHDKEFKFTLTTNAVRLDAEIINYL 204
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+ + + +SL + + K + + +
Sbjct: 205 NDNDIAVVLSLDGRPEVNDRMRLTPAGKGSYHTITHKIKEMVQSRHNENYYVR-GTFTRF 263
Query: 293 N-DSPRDALNLIKILKGIPAKI 313
N D D L+L+ L +
Sbjct: 264 NLDFAADVLHLVDDLGFKHVSV 285
>gi|256423142|ref|YP_003123795.1| molybdenum cofactor biosynthesis protein A [Chitinophaga pinensis
DSM 2588]
gi|256038050|gb|ACU61594.1| molybdenum cofactor biosynthesis protein A [Chitinophaga pinensis
DSM 2588]
Length = 326
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
R+ VM+KG+ND+ + + I K P + I F P+ G + +++
Sbjct: 149 GIRVKVNVVMMKGLNDN--EINDFIAWTKHTPVHVRFIEFMPFSGNRW---TSNKVMSLQ 203
Query: 339 ECIK 342
E +
Sbjct: 204 EILH 207
>gi|320085207|emb|CBY94993.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 292
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 75 GCLMRCLYC-HNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 133
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + ++
Sbjct: 134 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLDV 169
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 170 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWSDD 223
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 224 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 283
Query: 342 KRSGYSS 348
++ G+
Sbjct: 284 EQYGHKV 290
>gi|205352177|ref|YP_002225978.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207856361|ref|YP_002243012.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|16419481|gb|AAL19904.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|205271958|emb|CAR36802.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|206708164|emb|CAR32457.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261246186|emb|CBG23990.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|301157513|emb|CBW17003.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|332987861|gb|AEF06844.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 274
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 57 GCLMRCLYC-HNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 115
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + ++
Sbjct: 116 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLDV 151
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 152 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWSDD 205
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 206 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 265
Query: 342 KRSGYSS 348
++ G+
Sbjct: 266 EQYGHKV 272
>gi|222528638|ref|YP_002572520.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222455485|gb|ACM59747.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
Length = 453
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 27/240 (11%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C+ C L C +C+ + + L F + G ++ +
Sbjct: 93 MCLHVAHDCDLRCRYCFASSGSFKQ--------------ERKLMSFDVGKKAIGFLLQNS 138
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGE 233
G + + V GEPL NFD VKK + A + K TL+T+ +I
Sbjct: 139 GSRQNLEVDFFGGEPLLNFDVVKKIVEYAREEEKKYNKKISFTLTTNATNLSDDIIEYLN 198
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ + +S + + N + + + N +
Sbjct: 199 QNMENVVLSHDGRPEVNDFMRIDRNGNGTYSKITNNILRFIQKRNGKTYYVRGTFTAKNL 258
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPW---PGCEY--LCSDQKDIVTFSECIKRSGYSS 348
D +D L+L + I P + S + I + + ++
Sbjct: 259 DFSKDVLHLYSLGIKE------ISVEPVVLDKSSPWAIRESHIERIKEEYDILAEEYINA 312
>gi|205358099|ref|ZP_02575805.2| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|62127127|gb|AAX64830.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|205327467|gb|EDZ14231.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|323129235|gb|ADX16665.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|326627221|gb|EGE33564.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 292
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 75 GCLMRCLYC-HNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 133
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + ++
Sbjct: 134 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLDV 169
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 170 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWSDD 223
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 224 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 283
Query: 342 KRSGYSS 348
++ G+
Sbjct: 284 EQYGHKV 290
>gi|332093278|gb|EGI98338.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii
5216-82]
Length = 246
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLHGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|157154815|ref|YP_001462103.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
E24377A]
gi|301022943|ref|ZP_07186758.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
69-1]
gi|157076845|gb|ABV16553.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
E24377A]
gi|294493276|gb|ADE92032.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
IHE3034]
gi|300397284|gb|EFJ80822.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
69-1]
gi|315296163|gb|EFU55471.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
16-3]
gi|324113806|gb|EGC07781.1| pyruvate formate-lyase 1-activating enzyme [Escherichia fergusonii
B253]
gi|324116115|gb|EGC10039.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1167]
Length = 265
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 48 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 106
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 107 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 142
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 143 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 196
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 197 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 256
Query: 342 KRSGYSS 348
++ G+
Sbjct: 257 EQYGHKV 263
>gi|15800763|ref|NP_286777.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 EDL933]
gi|15830239|ref|NP_309012.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. Sakai]
gi|16128869|ref|NP_415422.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. MG1655]
gi|30062437|ref|NP_836608.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a
str. 2457T]
gi|56479766|ref|NP_706820.2| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a
str. 301]
gi|74311458|ref|YP_309877.1| pyruvate formate lyase-activating enzyme 1 [Shigella sonnei Ss046]
gi|82544640|ref|YP_408587.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii Sb227]
gi|82777578|ref|YP_403927.1| pyruvate formate lyase-activating enzyme 1 [Shigella dysenteriae
Sd197]
gi|89107752|ref|AP_001532.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. W3110]
gi|110641099|ref|YP_668829.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 536]
gi|110804910|ref|YP_688430.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 5
str. 8401]
gi|157160424|ref|YP_001457742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli HS]
gi|161486262|ref|NP_752967.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
CFT073]
gi|162138459|ref|YP_539989.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UTI89]
gi|168752115|ref|ZP_02777137.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4113]
gi|168756994|ref|ZP_02782001.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4401]
gi|168762963|ref|ZP_02787970.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4501]
gi|168769896|ref|ZP_02794903.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4486]
gi|168776246|ref|ZP_02801253.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4196]
gi|168783813|ref|ZP_02808820.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4076]
gi|168787331|ref|ZP_02812338.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC869]
gi|168801415|ref|ZP_02826422.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC508]
gi|170020696|ref|YP_001725650.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ATCC
8739]
gi|170080560|ref|YP_001729880.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. DH10B]
gi|188492165|ref|ZP_02999435.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638]
gi|191172048|ref|ZP_03033592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11]
gi|193064616|ref|ZP_03045695.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22]
gi|193070729|ref|ZP_03051664.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
E110019]
gi|194428375|ref|ZP_03060916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171]
gi|194434403|ref|ZP_03066666.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
1012]
gi|194438701|ref|ZP_03070788.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1]
gi|195939563|ref|ZP_03084945.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. EC4024]
gi|208805965|ref|ZP_03248302.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4206]
gi|208815370|ref|ZP_03256549.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4045]
gi|208822382|ref|ZP_03262701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4042]
gi|209400841|ref|YP_002269574.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4115]
gi|209918152|ref|YP_002292236.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SE11]
gi|215486027|ref|YP_002328458.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O127:H6 str. E2348/69]
gi|217324861|ref|ZP_03440945.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. TW14588]
gi|218548419|ref|YP_002382210.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii
ATCC 35469]
gi|218553488|ref|YP_002386401.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI1]
gi|218557807|ref|YP_002390720.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli S88]
gi|218688742|ref|YP_002396954.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ED1a]
gi|218694375|ref|YP_002402042.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 55989]
gi|218700580|ref|YP_002408209.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI39]
gi|218704329|ref|YP_002411848.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
UMN026]
gi|238900160|ref|YP_002925956.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
BW2952]
gi|253774069|ref|YP_003036900.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161016|ref|YP_003044124.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli B str.
REL606]
gi|254792101|ref|YP_003076938.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. TW14359]
gi|256020970|ref|ZP_05434835.1| pyruvate formate lyase-activating enzyme 1 [Shigella sp. D9]
gi|256023397|ref|ZP_05437262.1| pyruvate formate lyase-activating enzyme 1 [Escherichia sp.
4_1_40B]
gi|260843152|ref|YP_003220930.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O103:H2 str. 12009]
gi|260854193|ref|YP_003228084.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O26:H11 str. 11368]
gi|260867074|ref|YP_003233476.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O111:H- str. 11128]
gi|261227405|ref|ZP_05941686.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. FRIK2000]
gi|261256172|ref|ZP_05948705.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. FRIK966]
gi|291281903|ref|YP_003498721.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
str. CB9615]
gi|293409279|ref|ZP_06652855.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354]
gi|297519591|ref|ZP_06937977.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli OP50]
gi|306812645|ref|ZP_07446838.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101]
gi|307137531|ref|ZP_07496887.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli H736]
gi|307311711|ref|ZP_07591351.1| pyruvate formate-lyase activating enzyme [Escherichia coli W]
gi|309784023|ref|ZP_07678667.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
1617]
gi|312969032|ref|ZP_07783239.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
2362-75]
gi|312971030|ref|ZP_07785209.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
1827-70]
gi|331656972|ref|ZP_08357934.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206]
gi|331662315|ref|ZP_08363238.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143]
gi|331667278|ref|ZP_08368143.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271]
gi|331682409|ref|ZP_08383028.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299]
gi|71159621|sp|P0A9N6|PFLA_ECO57 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|71159622|sp|P0A9N5|PFLA_ECOL6 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|71159623|sp|P0A9N4|PFLA_ECOLI RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|71159624|sp|P0A9N7|PFLA_SHIFL RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|12514065|gb|AAG55387.1|AE005279_7 pyruvate formate lyase activating enzyme 1 [Escherichia coli
O157:H7 str. EDL933]
gi|42371|emb|CAA30829.1| unnamed protein product [Escherichia coli K-12]
gi|1787130|gb|AAC73988.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. MG1655]
gi|4062478|dbj|BAA35637.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K12 substr. W3110]
gi|13360444|dbj|BAB34408.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O157:H7 str. Sakai]
gi|30040683|gb|AAP16414.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a
str. 2457T]
gi|56383317|gb|AAN42527.2| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a
str. 301]
gi|73854935|gb|AAZ87642.1| pyruvate formate lyase activating enzyme 1 [Shigella sonnei Ss046]
gi|81241726|gb|ABB62436.1| pyruvate formate lyase activating enzyme 1 [Shigella dysenteriae
Sd197]
gi|81246051|gb|ABB66759.1| pyruvate formate lyase activating enzyme 1 [Shigella boydii Sb227]
gi|110342691|gb|ABG68928.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 536]
gi|110614458|gb|ABF03125.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 5
str. 8401]
gi|157066104|gb|ABV05359.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli HS]
gi|169755624|gb|ACA78323.1| pyruvate formate-lyase activating enzyme [Escherichia coli ATCC
8739]
gi|169888395|gb|ACB02102.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. DH10B]
gi|187768338|gb|EDU32182.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4196]
gi|188013962|gb|EDU52084.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4113]
gi|188487364|gb|EDU62467.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638]
gi|188998898|gb|EDU67884.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4076]
gi|189355900|gb|EDU74319.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4401]
gi|189361165|gb|EDU79584.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4486]
gi|189366831|gb|EDU85247.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4501]
gi|189372637|gb|EDU91053.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC869]
gi|189376430|gb|EDU94846.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC508]
gi|190907575|gb|EDV67170.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11]
gi|192927673|gb|EDV82288.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22]
gi|192955922|gb|EDV86390.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
E110019]
gi|194413590|gb|EDX29871.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171]
gi|194417387|gb|EDX33493.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
1012]
gi|194422333|gb|EDX38333.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1]
gi|208725766|gb|EDZ75367.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4206]
gi|208732018|gb|EDZ80706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4045]
gi|208737867|gb|EDZ85550.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4042]
gi|209162241|gb|ACI39674.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4115]
gi|209748614|gb|ACI72614.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
gi|209748616|gb|ACI72615.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
gi|209748618|gb|ACI72616.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
gi|209911411|dbj|BAG76485.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE11]
gi|215264099|emb|CAS08443.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O127:H6 str. E2348/69]
gi|217321082|gb|EEC29506.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. TW14588]
gi|218351107|emb|CAU96811.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli 55989]
gi|218355960|emb|CAQ88576.1| pyruvate formate lyase activating enzyme 1 [Escherichia fergusonii
ATCC 35469]
gi|218360256|emb|CAQ97806.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI1]
gi|218364576|emb|CAR02262.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli S88]
gi|218370566|emb|CAR18373.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI39]
gi|218426306|emb|CAR07131.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ED1a]
gi|218431426|emb|CAR12304.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
UMN026]
gi|222032633|emb|CAP75372.1| Pyruvate formate-lyase 1-activating enzyme [Escherichia coli LF82]
gi|238863358|gb|ACR65356.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
BW2952]
gi|242376717|emb|CAQ31430.1| pyruvate formate-lyase activating enzyme [Escherichia coli
BL21(DE3)]
gi|253325113|gb|ACT29715.1| pyruvate formate-lyase activating enzyme [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972917|gb|ACT38588.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli B str.
REL606]
gi|253977131|gb|ACT42801.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
BL21(DE3)]
gi|254591501|gb|ACT70862.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O157:H7 str. TW14359]
gi|257752842|dbj|BAI24344.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O26:H11 str. 11368]
gi|257758299|dbj|BAI29796.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O103:H2 str. 12009]
gi|257763430|dbj|BAI34925.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O111:H- str. 11128]
gi|260449952|gb|ACX40374.1| pyruvate formate-lyase activating enzyme [Escherichia coli DH1]
gi|281178033|dbj|BAI54363.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE15]
gi|281600262|gb|ADA73246.1| Pyruvate formate lyase-activating enzyme 1 [Shigella flexneri
2002017]
gi|284920753|emb|CBG33816.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 042]
gi|290761776|gb|ADD55737.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
str. CB9615]
gi|291469747|gb|EFF12231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354]
gi|305853408|gb|EFM53847.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101]
gi|306908266|gb|EFN38765.1| pyruvate formate-lyase activating enzyme [Escherichia coli W]
gi|307552741|gb|ADN45516.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ABU
83972]
gi|307627671|gb|ADN71975.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UM146]
gi|308928166|gb|EFP73629.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
1617]
gi|309701178|emb|CBJ00478.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli ETEC
H10407]
gi|310336791|gb|EFQ01958.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
1827-70]
gi|312286434|gb|EFR14347.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
2362-75]
gi|312945422|gb|ADR26249.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O83:H1
str. NRG 857C]
gi|313648452|gb|EFS12895.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri 2a
str. 2457T]
gi|315060187|gb|ADT74514.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli W]
gi|315135550|dbj|BAJ42709.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli DH1]
gi|315619096|gb|EFU99676.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 3431]
gi|320173243|gb|EFW48452.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC
74-1112]
gi|320182031|gb|EFW56936.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC
9905]
gi|320184266|gb|EFW59079.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC
796-83]
gi|320192612|gb|EFW67253.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. EC1212]
gi|320196604|gb|EFW71227.1| Pyruvate formate-lyase activating enzyme [Escherichia coli
WV_060327]
gi|320202298|gb|EFW76869.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B]
gi|320637770|gb|EFX07562.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. G5101]
gi|320653668|gb|EFX21742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320659813|gb|EFX27369.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
str. USDA 5905]
gi|320664282|gb|EFX31433.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. LSU-61]
gi|323157211|gb|EFZ43334.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
EPECa14]
gi|323159528|gb|EFZ45508.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
E128010]
gi|323165367|gb|EFZ51154.1| pyruvate formate-lyase 1-activating enzyme [Shigella sonnei 53G]
gi|323175475|gb|EFZ61070.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1180]
gi|323185392|gb|EFZ70756.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1357]
gi|323190722|gb|EFZ75991.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
RN587/1]
gi|323379256|gb|ADX51524.1| pyruvate formate-lyase activating enzyme [Escherichia coli KO11]
gi|323938008|gb|EGB34270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1520]
gi|323942818|gb|EGB38983.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E482]
gi|323947309|gb|EGB43317.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H120]
gi|323953391|gb|EGB49257.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H252]
gi|323958207|gb|EGB53916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H263]
gi|323962894|gb|EGB58468.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H489]
gi|323967149|gb|EGB62573.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M863]
gi|323973225|gb|EGB68417.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA007]
gi|323976711|gb|EGB71799.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
TW10509]
gi|325496842|gb|EGC94701.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii
ECD227]
gi|326338203|gb|EGD62032.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. 1125]
gi|326346180|gb|EGD69918.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. 1044]
gi|327253691|gb|EGE65320.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
STEC_7v]
gi|330910682|gb|EGH39192.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86]
gi|331055220|gb|EGI27229.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206]
gi|331060737|gb|EGI32701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143]
gi|331065634|gb|EGI37527.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271]
gi|331080040|gb|EGI51219.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299]
gi|332093544|gb|EGI98602.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii
3594-74]
gi|332095904|gb|EGJ00911.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
155-74]
gi|332342345|gb|AEE55679.1| pyruvate formate-lyase 1-activating enzyme PflA [Escherichia coli
UMNK88]
gi|332760073|gb|EGJ90371.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
2747-71]
gi|332762668|gb|EGJ92931.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
K-671]
gi|333006341|gb|EGK25849.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri VA-6]
gi|333006966|gb|EGK26461.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
K-218]
gi|333019965|gb|EGK39236.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
K-304]
Length = 246
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|240147395|ref|ZP_04745996.1| putative Fe-S oxidoreductase [Roseburia intestinalis L1-82]
gi|257200413|gb|EEU98697.1| putative Fe-S oxidoreductase [Roseburia intestinalis L1-82]
Length = 469
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 43/313 (13%), Positives = 90/313 (28%), Gaps = 36/313 (11%)
Query: 50 FQGMSDISQEVRHLL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETV 106
F +++ ++ L + + + + I R +L + P++
Sbjct: 16 FDANTNVIINLKEDLYFELEKYMQSGYKEITPAIEKLRDRGYLKDRADFEMVHPMDSTLE 75
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
Y E+ GT+ + GC+L C +C + +V ++ + +
Sbjct: 76 YSLERCIGTIALQVTQGCNLRCKYCA----------YSGSYDNRVHSSKRMSKEIAFKAI 125
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
++S G EPL D +K+ + A IT +T+
Sbjct: 126 DFLFDHSIDRDRVSLGFYGG--EPLLELDLIKECVKYAKKKSIGKELMFNITSNTTLITD 183
Query: 227 NIARVGEEIGVMLAISLHAVSN-DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
+ + + L +SL +N + N +++
Sbjct: 184 EVLKFLYDNEFSLTVSLDGDRQAHDKNRVFAANGAGTFSVVMQILEKIQTQYPDYMERVH 243
Query: 286 YVMLKGINDSPRDALNL---IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT------ 336
+ N K +K + NLI EY D+
Sbjct: 244 INAVIDPTTDFDCTSNFFSDYKTVKDFYIQANLI-------SEYYRKDEVATDEEYREKF 296
Query: 337 ----FSECIKRSG 345
F +++ G
Sbjct: 297 SYEIFKMYLQKLG 309
>gi|191167604|ref|ZP_03029415.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A]
gi|190902365|gb|EDV62103.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A]
Length = 265
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 48 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 106
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 107 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 142
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 143 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 196
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 197 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 256
Query: 342 KRSGYSS 348
++ G+
Sbjct: 257 EQYGHKV 263
>gi|323174998|gb|EFZ60613.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli LT-68]
Length = 246
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FTKYLANKN-VKVWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|251789946|ref|YP_003004667.1| pyruvate formate lyase-activating enzyme 1 [Dickeya zeae Ech1591]
gi|247538567|gb|ACT07188.1| pyruvate formate-lyase activating enzyme [Dickeya zeae Ech1591]
Length = 246
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T EE++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G++ L T+GFV + ++
Sbjct: 88 VRD---------------WFRAC----HEQGIN-----TCLDTNGFVRRYDPVIDELLDV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N +R YV++ +D
Sbjct: 124 TDLVMLDLKQLNDEVHQNLVGVSNHRTLE-----FARYLAKRN-QRTWIRYVVVPDWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + K + KI L+P++ ++ + +
Sbjct: 178 DASAHLLGEFTKEMSNIEKIELLPYHELGKHKWTAMGEEYKLDGIKPPKADTMDRIKSIL 237
Query: 342 KRSGYSS 348
G+
Sbjct: 238 TSYGHKV 244
>gi|313203906|ref|YP_004042563.1| nitrogenase cofactor biosynthesis protein nifb [Paludibacter
propionicigenes WB4]
gi|312443222|gb|ADQ79578.1| nitrogenase cofactor biosynthesis protein NifB [Paludibacter
propionicigenes WB4]
Length = 424
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 79/233 (33%), Gaps = 33/233 (14%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C++C + N + + VL P + ++ I
Sbjct: 32 KCNIQCNYC--NRKYDCVNESRPGVTSSVLA--------PFQAVEYLRDLDGRIENLAVI 81
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
+ G G+P N + +++ S F ++ LST+G P I + E +
Sbjct: 82 GIAGPGDPFANPEETLETMRRVSKE----FPEKIFCLSTNGLNLEPYIDEIAELNVSHVT 137
Query: 241 ISLHAVSNDLRNILVPINRKYP-----------LEMLIDACRHYPGLSNARRITFEYVML 289
I+++A+ + + R L AC + + I +++
Sbjct: 138 ITINAIDPKITAKIYKWVRFNKKVYRGEEGAAILLERQLACIAKLK-ARSITIKINSIII 196
Query: 290 KGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340
GIN+ P A ++ + IN IP P + ++ D +
Sbjct: 197 PGINEDHIPEVAKKCAELGADV---INCIPLIPTAETPFEAVEKPDTKMIFKT 246
>gi|117623083|ref|YP_851996.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC
O1]
gi|115512207|gb|ABJ00282.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC
O1]
Length = 265
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 48 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 106
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 107 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 142
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 143 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 196
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 197 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 256
Query: 342 KRSGYSS 348
++ G+
Sbjct: 257 EQYGHKV 263
>gi|121605004|ref|YP_982333.1| radical SAM domain-containing protein [Polaromonas
naphthalenivorans CJ2]
gi|120593973|gb|ABM37412.1| Radical SAM domain protein [Polaromonas naphthalenivorans CJ2]
Length = 362
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 40/255 (15%), Positives = 75/255 (29%), Gaps = 35/255 (13%)
Query: 117 CVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
C+ + TC FC G R + + +A + + + P+
Sbjct: 119 CIRYESR-KKTCQFCAIGQSLAAGRTIAHKTPAQLAEVAAAAVRLDGVKHMVMTTGTPNA 177
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
+ + ++ D ++ D R + T G
Sbjct: 178 TDRGAQVLCESALAIRAAVDLPLQAQCEPPDDDRWFQRMRDAGIDTLGM----------- 226
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
L V+ +LR ++P P+ + A + R +L G+ D+
Sbjct: 227 ------HLEVVTPELRARIMPGKATVPISRYMAAFEASVRVFG--RGQVSTYILAGLGDT 278
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECI----KRSGYSS 348
P L++ L + ++PF P G + E + R+G +
Sbjct: 279 PEAILSISGQLLALGVYPFVVPFVPISGTPLEDHPAPPADFMKALLEPLGAMVARAGLRA 338
Query: 349 PIRTPRGLDILAACG 363
DI A CG
Sbjct: 339 -------NDIKAGCG 346
>gi|307299480|ref|ZP_07579280.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
gi|306914879|gb|EFN45266.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
Length = 316
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 69/235 (29%), Gaps = 27/235 (11%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C C+ C +C G + N +L + + G
Sbjct: 19 VCTIPFKTCNYACVYCQLGRTTNMTNTRQT-----FYPPEEILSEARRFIEAHGEESFD- 72
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
+ +V G D + + L + + + L T+G + + EEI
Sbjct: 73 ---VVTVVGEGEPTLYKPLDAIVRGLRE--------MTGKPLVLITNGSLLFDRELVEEI 121
Query: 236 GVMLAISLHAVSNDLRNILVPINRKY---PLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
I + + INR + E + + I E +++K
Sbjct: 122 K-DFDIVMPTLDAKDEESFKRINRPFGKLTYEKVYKGLLDFSKEFKGE-IWLEVMLIKDY 179
Query: 293 NDSPRDALNLIKI---LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
NDS L K +K IN+ P P + I F+ + +
Sbjct: 180 NDSDGFLRELKKKIDQIKPARVYINV-PARPPAESGIEVPSESAIE-FARTLLNA 232
>gi|167755395|ref|ZP_02427522.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402]
gi|167704334|gb|EDS18913.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402]
Length = 299
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 73/254 (28%), Gaps = 25/254 (9%)
Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
+ LR + + ++ T C++ C + +N
Sbjct: 26 FFKGCPLRCKWCSNPESQLKAVQILWDHNKCTHCMTCINNCPTGAIKLIADKIIIDQNKC 85
Query: 144 AEEI-----LLQVLLAR----SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
+ Q+ L + + + I+ GM +P F
Sbjct: 86 NGCLRCVNKCPQIALKNEGEYKTIDEIVTTCLQDKDFYEESNGGITISGGEGMSQPAFLF 145
Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254
V + + + T+G++ + L + + ++ L
Sbjct: 146 HLVNELKKHQLH----------LAIETTGYIEHELFTKLAPLFDLLLFDVKHYDREQHFL 195
Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KI 313
+ + L N + ++ NDS DA L ++LK I K+
Sbjct: 196 GTGVYNDLIIKNLKW-----ALQNKIEVLPRIPVIPDFNDSLNDAKGLARLLKNIGVLKV 250
Query: 314 NLIPFNPWPGCEYL 327
L+PF+ + +Y
Sbjct: 251 QLLPFHQFGEKKYE 264
>gi|257063931|ref|YP_003143603.1| KamA family protein [Slackia heliotrinireducens DSM 20476]
gi|256791584|gb|ACV22254.1| KamA family protein [Slackia heliotrinireducens DSM 20476]
Length = 407
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 47/277 (16%), Positives = 90/277 (32%), Gaps = 52/277 (18%)
Query: 48 RDFQGMSDISQEVRHLLNQHFSII----YPEIVDEKISCDGTRKWLLRFPARCIGGPV-- 101
RDF +SD + + +++ ++ Y +V+ D R+ + +
Sbjct: 27 RDFLQLSDADSTMLESIQENYPLLVNPYYLSLVNPNDPDDPVRRMCIPAAEELDFSGLAD 86
Query: 102 ------EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL---TAEEILLQVL 152
+ K T V S C++ C C R L A+E + +
Sbjct: 87 TSGESKSTVLPGLQHKYAETALVLSTNQCAMYCRHC------FRRRLVGRDADETVRNID 140
Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK----KSLSIASDSM 208
+ D +I+N+++ G G+ L N + ++L+
Sbjct: 141 AVADYIRDH---------------EEITNVLISG-GDALMNSNETLFRYLEALAPIPHLK 184
Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR-NILVPINRKYPLEMLI 267
+ R + + + G + LH V+ N + P
Sbjct: 185 TIRLGTRIPVVLPQRITDDPGLIDLLSGFNHIVQLHVVTQFNHPNEITP--------ESR 236
Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
DA R L + + V+LKG+ND+P L+
Sbjct: 237 DAIRILLEL--GIPVRNQTVLLKGVNDTPETLARLMD 271
>gi|157146410|ref|YP_001453729.1| pyruvate formate lyase-activating enzyme 1 [Citrobacter koseri ATCC
BAA-895]
gi|157083615|gb|ABV13293.1| hypothetical protein CKO_02169 [Citrobacter koseri ATCC BAA-895]
Length = 255
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 29/244 (11%), Positives = 79/244 (32%), Gaps = 46/244 (18%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 38 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 96
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
+ + K+S+ D+ G + E+ +
Sbjct: 97 V--------RDWFRACK--KESIHTCLDTNGFVRRY-----------DPVIDELLEVTDL 135
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ + L +++++ LV ++ ++ ++ + YV++ G +D
Sbjct: 136 VMLDLKQMNDEIHQNLVGVSN----HRTLEFAKYISA--KGIKTWIRYVVVPGWSDDDDS 189
Query: 299 ALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRS 344
A L + + + KI L+P++ ++ ++ + +++
Sbjct: 190 AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQY 249
Query: 345 GYSS 348
G+
Sbjct: 250 GHKV 253
>gi|153811927|ref|ZP_01964595.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174]
gi|149832061|gb|EDM87146.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174]
Length = 245
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 41/237 (17%)
Query: 122 VGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC++ C FC+ T + T ++L Q L ++ G+ +G + S G
Sbjct: 30 SGCAMRCQFCHNPDTWKMGEGQQYTPSQLLKQALRYKNYWGN-------KGGITVSGGEP 82
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
+ I + V +L +++ +
Sbjct: 83 LLQIDFLTELFRQAKAAGVHTTLDTSANPYTEKEPF------------YSKWLELMKYTD 130
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
L + ++ +I + + + + + +V++ G +D
Sbjct: 131 LVLLDIKQIDEEEHIKLTGQSNKNILAMARKL-----SDMGKPMWIRHVLVPGGSDKDEY 185
Query: 299 ALNLIKILKGIPA--KINLIPFN------------PWPGCEYLCSDQKDIVTFSECI 341
L + + ++ ++P++ P+P ++ I E +
Sbjct: 186 LHRLADFIHTLKTVERVEVLPYHTLGVFKWEQLGIPYPLEGVRPPSEERINNAREIL 242
>gi|226510327|ref|NP_001140457.1| hypothetical protein LOC100272516 [Zea mays]
gi|194699592|gb|ACF83880.1| unknown [Zea mays]
gi|194704796|gb|ACF86482.1| unknown [Zea mays]
Length = 393
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 30/232 (12%)
Query: 119 SSQVGCSLTCSF-CYTGTQKLVRNLTAEEI-LLQVLLARSLLGDFPGCE---------DI 167
+ CS TC+ C T L R ++ E+ + + L
Sbjct: 39 TDSQRCSSTCATSCATDPDVLSRETSSSEMLVDSFGRFHNYLRISLTERCNLRCQYCMPA 98
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCN-----------FDNVKKSLSIASDSMGLSFSKRR 216
EG+ + +S+ ++ + + V+K + + +
Sbjct: 99 EGVELTPKSELLSHDEIIRIADLFVTSGVNKIRLIGGEPTVRKDIEDICLHLSSLKGLKT 158
Query: 217 ITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
+ ++T+G V + ++ E L ISL + + + IDA
Sbjct: 159 LAMTTNGIVLSKKLPKLKECGLNALNISLDTLVPAKFEFMTRRKGHSKVLESIDAAVEL- 217
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ V+++GIND + N +++ + P + I F P+ G +
Sbjct: 218 ---GYSPVKVNCVIMRGIND--DEICNFVELTRHKPINVRFIEFMPFDGNVW 264
>gi|229825163|ref|ZP_04451232.1| hypothetical protein GCWU000182_00514 [Abiotrophia defectiva ATCC
49176]
gi|229790535|gb|EEP26649.1| hypothetical protein GCWU000182_00514 [Abiotrophia defectiva ATCC
49176]
Length = 479
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 84/252 (33%), Gaps = 25/252 (9%)
Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTL--- 116
L + + + D ++ + + G + E +Y K R T+
Sbjct: 50 LAEIKDTVLRKYKDVSVTEEDFNDIISEIKELQEDGQLFTEDIYEKYVKDFKHRNTVVKA 109
Query: 117 -CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
C++ C+L C +C+ G + + R ++ G + ++ S
Sbjct: 110 LCLNIAHDCNLACRYCFAGEGEYQGD-------------RGMMSYEVGKAAFDFLIKNSG 156
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
RK + G GEPL N++ VK ++ + + R TL+T+G + I
Sbjct: 157 HRKNLEVDFFG-GEPLMNWNTVKMLVAYGRELEKIHDKNFRFTLTTNGMLLNDEIIDFCN 215
Query: 234 EIGVMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+ + +S+ K +++I + + + +
Sbjct: 216 KEMTNVVLSIDGRKCVHDYMRPTRGGNKSSYDIIIPKLKDFAAKRDKKEYYVRGTYTSKN 275
Query: 293 NDSPRDALNLIK 304
D D L+L
Sbjct: 276 LDFAADVLHLAD 287
>gi|189347159|ref|YP_001943688.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
gi|189341306|gb|ACD90709.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
Length = 321
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 70/221 (31%), Gaps = 26/221 (11%)
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
C+ C +C G K + P E G I
Sbjct: 35 MKSCTWNCVYCQIGRTK-------------HYVTERCEFYPPEEILKEIRDALQAGTHID 81
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE--IGVM 238
I +G GE L D + + + T+G + ++ V E
Sbjct: 82 WITFVGSGETLLYKD------IGYLIEEVKKMTAIPVAVITNGSLFHLEEVRRELLHADA 135
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ SL+A S +L + + + +D + ++ E ++L G+NDS
Sbjct: 136 VLPSLNAGSEELYERIDRPASGFTFKQHLDGLIQF-RQEYKGKLWVEVMLLNGLNDSDEA 194
Query: 299 ALNLI---KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
L K++ + ++P P P + + D + I
Sbjct: 195 LNELAAAMKLVAPDMVHL-VLPTRPAPEQQVVLPDNERIDR 234
>gi|331651920|ref|ZP_08352939.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718]
gi|331050198|gb|EGI22256.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718]
Length = 255
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 38 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 96
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 97 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 132
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++D+ LV ++ LE Y N ++ YV++ G +D
Sbjct: 133 TDLVMLDLKQMNDDIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 186
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 187 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 246
Query: 342 KRSGYSS 348
++ G+
Sbjct: 247 EQYGHKV 253
>gi|296103095|ref|YP_003613241.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057554|gb|ADF62292.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 246
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 30/247 (12%), Positives = 82/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + ++
Sbjct: 88 VRD---------------WFRAC----HKEGI-----HTCLDTNGFVRRYDPVIDELLDV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ ++ ++ + YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSN----HRTLEFAKYISA--KGIKTWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|227498357|ref|ZP_03928507.1| glycerol dehydratase activator [Acidaminococcus sp. D21]
gi|226903819|gb|EEH89737.1| glycerol dehydratase activator [Acidaminococcus sp. D21]
Length = 258
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 74/241 (30%), Gaps = 28/241 (11%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC L C +C T A ++ V ++S + + ++ + + IS
Sbjct: 31 KGCPLRCQWCST------PESQAFQVETTVDGSKSYGTEMTVTDVMKEVRKDTAFYFISG 84
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
M G L + +L A+ G+S + + S G +
Sbjct: 85 GGMTLSGGELLAQPDFSLALLKAASMEGISTA---VETSFFG-KEETIAAMVPYVDTFYV 140
Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
L AV+ L ++ + L + + ++ ++ G+NDS +
Sbjct: 141 DLKAVTPSLHKKYCGVDNRIILHNI----KFLDRQKGGFQMILRTPLIPGVNDSEEELHK 196
Query: 302 LIKILKGI--PAKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYS 347
+ + + + L+P++ Y + + ++ +
Sbjct: 197 IGTFCQNLDRLVYLQLLPYHALGSVTYKKLGRDYMMKSVKTPTLDMMDRCRKILRTYNIT 256
Query: 348 S 348
Sbjct: 257 V 257
>gi|330834353|ref|YP_004409081.1| tRNA-modifying enzyme [Metallosphaera cuprina Ar-4]
gi|329566492|gb|AEB94597.1| tRNA-modifying enzyme [Metallosphaera cuprina Ar-4]
Length = 279
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT--LSTSGFVPNIARVGEEI 235
K S++ + GEP ++ + + + KR IT L TSG P++ EE
Sbjct: 55 KPSHVAISLTGEPTL-YERLGELIREYH--------KRGITTFLVTSGVRPDVLASLEEE 105
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
L +SL A ++ +++ P S+ M+K +N S
Sbjct: 106 PTQLFVSLQAPDEQKHKLINRPVVGNSWNLVMKTLEILPSFSS--PTVIRMTMMKDVNMS 163
Query: 296 PRDALNLIKILKG-IPAKINLIPFNPWPGCEYL-----CSDQKDIVTFSECIKR 343
DA +++ +P I + + Y +I FS+ +
Sbjct: 164 EEDAKEFSRLMTIAMPTYIEVKAYMHVGPSTYRLTKDAMPRHAEIRLFSQKLAE 217
>gi|187734201|ref|YP_001880903.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii CDC
3083-94]
gi|227884133|ref|ZP_04001938.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972]
gi|237707110|ref|ZP_04537591.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp.
3_2_53FAA]
gi|293404208|ref|ZP_06648202.1| pflA [Escherichia coli FVEC1412]
gi|293414182|ref|ZP_06656831.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185]
gi|293433199|ref|ZP_06661627.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088]
gi|298379988|ref|ZP_06989593.1| pflA [Escherichia coli FVEC1302]
gi|300816995|ref|ZP_07097214.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
107-1]
gi|300823641|ref|ZP_07103768.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
119-7]
gi|300901670|ref|ZP_07119730.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
198-1]
gi|300902940|ref|ZP_07120885.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
84-1]
gi|300921063|ref|ZP_07137448.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
115-1]
gi|300929596|ref|ZP_07145058.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
187-1]
gi|300937598|ref|ZP_07152408.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
21-1]
gi|300949737|ref|ZP_07163715.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
116-1]
gi|300955451|ref|ZP_07167825.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
175-1]
gi|300978474|ref|ZP_07174289.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
45-1]
gi|300983149|ref|ZP_07176463.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
200-1]
gi|301047840|ref|ZP_07194891.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
185-1]
gi|301302491|ref|ZP_07208622.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
124-1]
gi|301325772|ref|ZP_07219222.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
78-1]
gi|301643421|ref|ZP_07243469.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
146-1]
gi|309795288|ref|ZP_07689706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
145-7]
gi|331641428|ref|ZP_08342563.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736]
gi|331672441|ref|ZP_08373231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280]
gi|331676690|ref|ZP_08377386.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591]
gi|332282193|ref|ZP_08394606.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9]
gi|26107327|gb|AAN79510.1|AE016758_114 Pyruvate formate-lyase 1 activating enzyme [Escherichia coli
CFT073]
gi|91071577|gb|ABE06458.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli UTI89]
gi|187431193|gb|ACD10467.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii CDC
3083-94]
gi|226898320|gb|EEH84579.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp.
3_2_53FAA]
gi|227838885|gb|EEJ49351.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972]
gi|291324018|gb|EFE63440.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088]
gi|291428794|gb|EFF01819.1| pflA [Escherichia coli FVEC1412]
gi|291434240|gb|EFF07213.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185]
gi|298279686|gb|EFI21194.1| pflA [Escherichia coli FVEC1302]
gi|300300299|gb|EFJ56684.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
185-1]
gi|300306983|gb|EFJ61503.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
200-1]
gi|300317674|gb|EFJ67458.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
175-1]
gi|300354963|gb|EFJ70833.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
198-1]
gi|300405082|gb|EFJ88620.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
84-1]
gi|300409651|gb|EFJ93189.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
45-1]
gi|300411986|gb|EFJ95296.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
115-1]
gi|300450885|gb|EFK14505.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
116-1]
gi|300457377|gb|EFK20870.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
21-1]
gi|300462433|gb|EFK25926.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
187-1]
gi|300523841|gb|EFK44910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
119-7]
gi|300530347|gb|EFK51409.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
107-1]
gi|300842330|gb|EFK70090.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
124-1]
gi|300847444|gb|EFK75204.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
78-1]
gi|301078135|gb|EFK92941.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
146-1]
gi|308120938|gb|EFO58200.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
145-7]
gi|315257942|gb|EFU37910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
85-1]
gi|315287536|gb|EFU46947.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
110-3]
gi|315291232|gb|EFU50592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
153-1]
gi|324009847|gb|EGB79066.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
57-2]
gi|324012960|gb|EGB82179.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
60-1]
gi|324019090|gb|EGB88309.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
117-3]
gi|331038226|gb|EGI10446.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736]
gi|331070347|gb|EGI41712.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280]
gi|331075379|gb|EGI46677.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591]
gi|332104545|gb|EGJ07891.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9]
Length = 255
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 38 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 96
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 97 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 132
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 133 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 186
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 187 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 246
Query: 342 KRSGYSS 348
++ G+
Sbjct: 247 EQYGHKV 253
>gi|315925679|ref|ZP_07921888.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315620997|gb|EFV00969.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 262
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 33/240 (13%)
Query: 121 QVGCSLTCSFCYT-GTQKLVRNLTA-EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC L C++C T +Q TA ++ +V+ +L + +DI G
Sbjct: 34 MKGCHLRCAWCSTPESQPFEIQTTAEDQTYGEVMTVEEVLKE--VRKDIPFYFHSGGGMT 91
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
+S MM + + L + G++ + + V +I +
Sbjct: 92 VSGGEMMAQPDFA-------RCLLQQAQKEGINTAIETALFAKWTVVESILQ----HVDT 140
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
I + V +L ++ + L L+ L + R+ ++ G+NDS +
Sbjct: 141 AYIDIKFVDPELHRRFCGVDNRPILSNLLHT----NSLRHPFRLIVRTPLIPGLNDSEAE 196
Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRS 344
+ + + I L+P++ Y + + + + +
Sbjct: 197 LHRIGQFCTQLKKLDWIQLLPYHKLGTDTYRKLGIPYALGDIDTPSPEHMEACRDIVAQH 256
>gi|317497051|ref|ZP_07955379.1| radical SAM superfamily protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|291558902|emb|CBL37702.1| Fe-S oxidoreductases [butyrate-producing bacterium SSC/2]
gi|316895711|gb|EFV17865.1| radical SAM superfamily protein [Lachnospiraceae bacterium
5_1_63FAA]
Length = 308
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 58/187 (31%), Gaps = 18/187 (9%)
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+ +C +C G + N + + + + S I +V
Sbjct: 30 CNYSCIYCQLGRTDKMTNKR-----------QEFYKTEDIIAEFKQYLKDSDKFDIVTVV 78
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
G N + +L +D + + + R M+ SL
Sbjct: 79 GEGEPTLAANLGELVVALKALTD------KPVAVITNGALLSDPQVREELCHADMVLPSL 132
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
A + ++ + E + + + + + E +++ GIND + L
Sbjct: 133 DAYNQEISKKIDRPYGTIKFEEEFEGLKKFTHMYEGE-LWLEIMLVDGINDDEQSILKFQ 191
Query: 304 KILKGIP 310
++LK +
Sbjct: 192 ELLKELK 198
>gi|325179829|emb|CCA14232.1| elicitorlike transglutaminase M81like protein putati [Albugo
laibachii Nc14]
Length = 435
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 27/204 (13%)
Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
T Q RN+T P + G N G+
Sbjct: 84 LSTLIQLTSRNITHIPWTSSYWPNWRNGIGRPWEGNTTRSPAEKYGTCFDNPKFFGL--- 140
Query: 191 LCNFDNVKKSLSIASDSMGL------SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
V K+ + S+ +G + + +T+S+SG + + H
Sbjct: 141 ------VTKAYGVRSEQVGNIVPCTSNADCKGVTISSSGCAKLPQESSGKCMLKWYGLCH 194
Query: 245 A------VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
A + ++ ++ N + + + L ND+ +
Sbjct: 195 AWAPASLMEDEPVCPVMYNNMLFQPFDIKALLIQAYDGALVETAFIGQRCLSDNNDTDKY 254
Query: 299 ALNL------IKILKGIPAKINLI 316
L I A +NLI
Sbjct: 255 GRYLSPERLDINAGSFFIAVMNLI 278
>gi|325090784|gb|EGC44094.1| molybdopterin cofactor biosynthetic protein [Ajellomyces capsulatus
H88]
Length = 769
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 75/231 (32%), Gaps = 28/231 (12%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+L C +C EE + + L +
Sbjct: 115 ISVTERCNLRCLYC-----------MPEEGVELSPAVKILTTPEIVYLSSLFVSQGVTKI 163
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMG--LSFSKRRITLSTSGFV--PNIARVGE 233
+++ GEP V+K + +G R + L+T+G + + E
Sbjct: 164 RLTG------GEPT-----VRKDIVPMMQQIGSLRRDGLRELCLTTNGISLHRKLDNMVE 212
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ +SL + ++ N + I ++ V+++G+N
Sbjct: 213 AGLTGINLSLDTLDPFQFQLMTRRNGLEAVMKSIARVLEMNKQGAGIKLKINCVVMRGMN 272
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
D + L +++ + P ++ I + P+ G ++ + I+
Sbjct: 273 DR--EILRFVELGREKPLEVRFIEYMPFDGNKWNQAKMLPYKEMLTIIREK 321
>gi|237807654|ref|YP_002892094.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM
9187]
gi|237499915|gb|ACQ92508.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM
9187]
Length = 248
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 38/270 (14%), Positives = 87/270 (32%), Gaps = 53/270 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
IET + Q GC + C +C+ T + + +T ++++ +L R
Sbjct: 8 HSIETCGTVDGPGIRFIAFFQ-GCLMRCKYCHNRDTWDTEGGKEVTVDDLMKDLLAYRHF 66
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G G ++ K+ G+
Sbjct: 67 IKASGGGVTASGGEATLQKEFVT---------------EWFKACKA----EGI-----HT 102
Query: 218 TLSTSGFVPNIARVGE---EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
L T+GF+ + + + ++ + + +++++ L ++ KY LE Y
Sbjct: 103 CLDTNGFIRHYDEALDALLDQTDLVMLDIKHMNDEIHIPLTHVSNKYCLE-----FARYL 157
Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA----KINLIPFNPWPGCEY---- 326
I YV++ G +D A L ++ KI ++P++ ++
Sbjct: 158 AKKGKT-IWIRYVVVPGWSDDDAGAHALGAFIRDELGGKVEKIEMLPYHELGKHKWTAMG 216
Query: 327 --------LCSDQKDIVTFSECIKRSGYSS 348
++ + E + G +
Sbjct: 217 EKYELEGIHPPKKEVMEHLKEILVSYGIKA 246
>gi|295096397|emb|CBK85487.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 246
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 31/247 (12%), Positives = 82/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRAC----HKEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ ++ ++ + YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSN----HRTLEFAKYIAN--KGVKTWIRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|188590775|ref|YP_001921048.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum E3 str. Alaska E43]
gi|188501056|gb|ACD54192.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum E3 str. Alaska E43]
Length = 310
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 31/242 (12%), Positives = 74/242 (30%), Gaps = 43/242 (17%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEIL--LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
++C C N ++ + + + +L + R+ + V
Sbjct: 92 ISCGKCA-------ENCYPGALVVSGKEMSVKEVLDELNKDSSQF--------RRSNGGV 136
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
+ GEPL + + L G T+ T+G+V V L +
Sbjct: 137 TLSGGEPLLQHEFALEILK------GCKSIGIHTTIETTGYVDKEILRKIAPWVDLVLLD 190
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
N+ ++I + + + ++ N + ++
Sbjct: 191 IKTLNEDKHIKYVGASNKIILENAKSISELVTST-----IIRVPVIPQFNCDEKSIQDIA 245
Query: 304 KILKGIPAK--INLIPFNPWPGCEYLC-------------SDQKDIVTFSECIKRSGYSS 348
K K + I+L+P++ +Y C ++ ++ F + ++ G +
Sbjct: 246 KFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEEVMLNFKKIVEDIGLTC 305
Query: 349 PI 350
I
Sbjct: 306 NI 307
>gi|187933302|ref|YP_001886033.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B
str. Eklund 17B]
gi|187721455|gb|ACD22676.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B
str. Eklund 17B]
Length = 310
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 32/248 (12%), Positives = 77/248 (31%), Gaps = 44/248 (17%)
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEIL--LQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
++ C ++C C N ++ + + + +L + R
Sbjct: 87 NRDKC-ISCGKCA-------ENCYPGALVVSGKEMSVKEVLDELNKDSSQF--------R 130
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+ + V + GEPL + + L G T+ T+G+V V
Sbjct: 131 RSNGGVTLSGGEPLLQHEFALEILK------GCKSIGIHTTIETTGYVDKEILKKIAPWV 184
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
L + N+ ++I + + + ++ N +
Sbjct: 185 DLVLLDIKTLNEDKHIKYVGASNKIILENAKSISELVTST-----IIRVPVIPQFNCDEK 239
Query: 298 DALNLIKILKGIPAK--INLIPFNPWPGCEYLC-------------SDQKDIVTFSECIK 342
++ K K + I+L+P++ +Y C ++ ++ F + ++
Sbjct: 240 SIQDIAKFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEEVMLNFKKIVE 299
Query: 343 RSGYSSPI 350
G + I
Sbjct: 300 DIGLTCNI 307
>gi|237736168|ref|ZP_04566649.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
gi|229421721|gb|EEO36768.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
Length = 276
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 29/195 (14%)
Query: 121 QVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
C++ C FC T L R E E +
Sbjct: 25 PKSCNMNCIFCECGATKKLTLKR-----------------ERFKDPEEVKEEIKEVLKKI 67
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEI 235
K I G GEP + D + + + + + ++ + T+G + +
Sbjct: 68 KPDYITFSGSGEPTLSKD-IGEIIDWIKEHTDV-----KVCVITNGLLLEDGKVIEDIKK 121
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ +L++V N + + + + + ++ R+ I E +++G+NDS
Sbjct: 122 ADLIIPTLNSVDNLIFKKINRPSVESDISQVMGGLRNLSEKYRGE-IYIETFIIEGLNDS 180
Query: 296 PRDALNLIKILKGIP 310
++K LK +
Sbjct: 181 DEHTERMVKFLKNLK 195
>gi|167767743|ref|ZP_02439796.1| hypothetical protein CLOSS21_02278 [Clostridium sp. SS2/1]
gi|167710482|gb|EDS21061.1| hypothetical protein CLOSS21_02278 [Clostridium sp. SS2/1]
Length = 325
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 58/187 (31%), Gaps = 18/187 (9%)
Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
C+ +C +C G + N + + + + S I +V
Sbjct: 47 CNYSCIYCQLGRTDKMTNKR-----------QEFYKTEDIIAEFKQYLKDSDKFDIVTVV 95
Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
G N + +L +D + + + R M+ SL
Sbjct: 96 GEGEPTLAANLGELVVALKALTD------KPVAVITNGALLSDPQVREELCHADMVLPSL 149
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
A + ++ + E + + + + + E +++ GIND + L
Sbjct: 150 DAYNQEISKKIDRPYGTIKFEEEFEGLKKFTHMYEGE-LWLEIMLVDGINDDEQSILKFQ 208
Query: 304 KILKGIP 310
++LK +
Sbjct: 209 ELLKELK 215
>gi|149916871|ref|ZP_01905372.1| L-lysine 2,3-aminomutase [Plesiocystis pacifica SIR-1]
gi|149822149|gb|EDM81540.1| L-lysine 2,3-aminomutase [Plesiocystis pacifica SIR-1]
Length = 471
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 29/208 (13%)
Query: 118 VSSQVGCSLTCSFC----YTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
+ C + C FC G V ++ + + A + P EDI
Sbjct: 168 FLALDTCPVYCRFCTRSYAVGLDTEEVEKVSLKPTNDRWEAAFEYIASRPELEDIVISGG 227
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S + +I +GE L N+++ + + G + ++I T+
Sbjct: 228 DSYNLRADHI--KTIGERLLAMPNIRR---MRFATKGPAVMPQKILTDTA---------- 272
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLK 290
V S+H L + + + + + V+ +
Sbjct: 273 ---WVDALTSIHEQGRKLHKEVCIHTHFNHPNEITQISQRAMNLLFERGITVRNQSVLQR 329
Query: 291 GINDSPRDALNLIKILKGIPAKINLIPF 318
G+ND+P L+K A +N+ P+
Sbjct: 330 GVNDTPEAMGQLVK----RLAHVNVHPY 353
>gi|300245943|gb|ADJ94029.1| putative glycyl-radical enzyme [Clostridia bacterium enrichment
culture clone BF]
Length = 205
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC----------- 328
R+ ++ ND+ + +K + +INL+PF+ ++
Sbjct: 117 RLILRIPVITDFNDTEENMAETAYFMKSLDLFEINLLPFHRLGESKWHQLGKDYPYNERR 176
Query: 329 -SDQKDIVTFSECIKRSGYSSPI 350
+ + + + + +
Sbjct: 177 VPNDEKMKKLQAIFLDNRIACYV 199
>gi|229828664|ref|ZP_04454733.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM
14600]
gi|229793258|gb|EEP29372.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM
14600]
Length = 476
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 88/301 (29%), Gaps = 21/301 (6%)
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
R + + + + ++E + + + LC++
Sbjct: 44 RERMAEKYPKVSEADIEEVFAEIKALIDDQSLFTPDHYETYMDDVLKRRPTVVKALCLNV 103
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
C+L C +C+ R L+ G + ++ S R+
Sbjct: 104 AHDCNLACKYCFA---------DEGTYCG---GPRELMSFETGKNAFDFLIANSGNRRNL 151
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVM 238
+ G GEPL N++ VKK ++ L K R TL+T+G + I
Sbjct: 152 EVDFFG-GEPLMNWEVVKKLVAYGRQEEKLYDKKFRFTLTTNGVLLNDEIQDFLNREMSN 210
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ +S+ + + + ++ + +R + D +D
Sbjct: 211 VVLSIDGRKKIHNQMRPFRGGQDSYDRIVPKFQRLAESRGQQRYYARGTFTRNNLDFSQD 270
Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
L++ + + + P D + + + +R G D
Sbjct: 271 VLHIADLG-FKQISVEPVVAQPTDDYALREEDLPKLFAEYDRLAAE----MVRR-MGTDE 324
Query: 359 L 359
Sbjct: 325 D 325
>gi|302671353|ref|YP_003831313.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
gi|302395826|gb|ADL34731.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
Length = 479
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C++ C+L C +C+ E + R+L+ + G ++ ++ S
Sbjct: 122 CLNIAHDCNLRCKYCFA---------DEGEYHGR----RALMTEEVGKAALDFLIKNSGN 168
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEE 234
R+ + G GEPL N++ VKK + R T++T+G I +
Sbjct: 169 RRNLEVDFFG-GEPLMNWEVVKKIVEYGRSIEKEHNKNFRFTITTNGTLLNDEILEYVNK 227
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +S+ + + + ++ + + R D
Sbjct: 228 EMGNIVLSIDGRKEVNDFMRPRKGGQGCYDDIVPKFQKVAESRHQLRYFVRGTFTHNNLD 287
Query: 295 SPRDALNLIKI 305
D +L +
Sbjct: 288 FSEDVKHLADL 298
>gi|150400746|ref|YP_001324512.1| radical SAM domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150013449|gb|ABR55900.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
Length = 446
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 43/328 (13%), Positives = 103/328 (31%), Gaps = 52/328 (15%)
Query: 51 QGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110
+ +I ++ L ++ +S + K+ R G +
Sbjct: 56 DLLKNIHKKRIESLKS----GILNLISINVSQNLVNKYTNRKTYYISGSSQIPLIGHTAF 111
Query: 111 --KSRGTLCVSSQ--VGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
RGT + + GC++ C FC G R + + L
Sbjct: 112 GLIDRGTNIIQVRGLSGCNINCPFCSVDEGKHSKTR--KNDYYVDMDYLVEEYKKIVEFK 169
Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTS 222
+ + S + + E + N + + K ++ S G++ S + I
Sbjct: 170 GNKRIEAHLDGQGEPS--LYYPLPELIQNLNEINKKGDGLVSMQSNGVNLSYKLI----- 222
Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
+ + L+I+ +++++ ++ ++ Y + ++D + ++ +
Sbjct: 223 ----DELEEAGLHRINLSIN---AIDEIKSRMLSGSKTYDINKILDIAEYI--KNSKIHL 273
Query: 283 TFEYVMLKGINDSP--RDALNLIKILKGIPAK-INLI--PFNPW----------PGCEYL 327
++L IND + +++ + P IN I NP G +
Sbjct: 274 LVTSLLLPNINDEEFKKVIDFAVELEQKNPQNIINPITKKKNPILGVQMCLSYKFGRKIK 333
Query: 328 CSDQKDIVTFSECIKRS-------GYSS 348
+ F E ++ G +
Sbjct: 334 KMKSWKLNAFYELLREYEQEYKNKGITV 361
>gi|260913742|ref|ZP_05920218.1| KamA family protein [Pasteurella dagmatis ATCC 43325]
gi|260632281|gb|EEX50456.1| KamA family protein [Pasteurella dagmatis ATCC 43325]
Length = 337
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 40/280 (14%), Positives = 88/280 (31%), Gaps = 47/280 (16%)
Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
P + S D + + +V +R L + + GC++ C +C
Sbjct: 71 PLFLQVMSSADEFIQVEGFTTDPLEEQEAVVPSVLHKYHNR--LLLMVKGGCAVNCRYC- 127
Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
R+ + + + L + I ++ G G+PL
Sbjct: 128 -----FRRHFPYADNKGNKVNWQKALDYIAIRPE------------IEEVIFSG-GDPLM 169
Query: 193 NFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
D+ + K+L L R + P + ++ E + H
Sbjct: 170 AKDHELNWLIKNLENIPHLQRLRIHTRLPVVIPQRITPELCKILSESRFQTVLVTHINHP 229
Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
+ + + + L A + + V+LK IND DA L ++
Sbjct: 230 NEIDTTLSAA----IFKLKQA---------GVVLLNQSVLLKNIND---DAQILKQLSDK 273
Query: 309 IPAKINLIPF-----NPWPGCEYLCSDQKDIVTFSECIKR 343
+ + IN++P+ + G + + + + + ++
Sbjct: 274 LFS-INILPYYLHLLDKVEGASHFYIEDEKALNIYKILQS 312
>gi|224367545|ref|YP_002601708.1| PflC1 [Desulfobacterium autotrophicum HRM2]
gi|223690261|gb|ACN13544.1| PflC1 [Desulfobacterium autotrophicum HRM2]
Length = 302
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 21/150 (14%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
I + TSG V V L + + + + KY +
Sbjct: 157 HIAMETSGCVKEDIIKEIAPHVDLFLYDLKHIDPVEHR------KYCGIRNESILDNLEL 210
Query: 276 LSNARR-ITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIP--------FN----P 320
LS + I V++ G+NDSP L + LKGI I+L+P +N
Sbjct: 211 LSRMGKEIIIRMVVIPGVNDSPGTVERLCEFLKGIIGIRYISLLPLHKSATEKYNRLDKE 270
Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
+ ++ + +++ +E + G++ I
Sbjct: 271 FLLSDFEVPNDEEVKAIAEIFQSKGFTVQI 300
>gi|332797084|ref|YP_004458584.1| Wyosine base formation domain-containing protein [Acidianus
hospitalis W1]
gi|332694819|gb|AEE94286.1| Wyosine base formation domain protein [Acidianus hospitalis W1]
Length = 367
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 47/257 (18%), Positives = 86/257 (33%), Gaps = 31/257 (12%)
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
Y E R + C C C+ L E+I L+ + L E
Sbjct: 62 YGIESHRCVQMTPTAAWCWFRCIHCW--------RLEPEDIGLEW--DETKLPITDDPEY 111
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL--------SIASDSMG---LSFSKR 215
I I R +S + +P + +K + D +G + KR
Sbjct: 112 IAEKSIEEHKRAVSGYLGRKGVDPNMAKEAMKPAHVAISLTGEPTLYDRLGELIHEYHKR 171
Query: 216 RIT--LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
+T L TSG P++ EE L +S+ A + ++ + +
Sbjct: 172 GLTTFLVTSGVRPDVLASLEEEPTQLFVSIQAPNERKHKLINRPIVANSWNLFLKTLEIL 231
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEYLCSDQK 332
P S+ M+KG N S DA + K+++ +P I + + S
Sbjct: 232 PSFSS--PTVIRMTMIKGFNMSEEDAKDFAKLIEMAMPTYIEVKAYMHVGPSTLRLSRDA 289
Query: 333 -----DIVTFSECIKRS 344
++ F++ +++
Sbjct: 290 MPRHSEVREFAKLMEKY 306
>gi|262165976|ref|ZP_06033713.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus VM223]
gi|262025692|gb|EEY44360.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus VM223]
Length = 165
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL--------- 327
++ YV++ G D A L + +K + KI L+P++ ++
Sbjct: 80 GQKTWLRYVVVPGYTDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLE 139
Query: 328 ---CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 140 GVNPPSKETMDKIVAILEQYHSNV 163
>gi|154505871|ref|ZP_02042609.1| hypothetical protein RUMGNA_03413 [Ruminococcus gnavus ATCC 29149]
gi|153793889|gb|EDN76309.1| hypothetical protein RUMGNA_03413 [Ruminococcus gnavus ATCC 29149]
Length = 473
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + ++ + G
Sbjct: 109 CLHIAHDCNLACKYCFA---------EEGEY-----HGRRALMSLEVGKKALDFLVANSG 154
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
++ + V GEPL N+ VK ++ + + R TL+T+G + + +
Sbjct: 155 KRRNLEVDFFGGEPLMNWQVVKDLVAYGRELEKTNDKHFRFTLTTNGVLLNDEVQEFVNK 214
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +SL + N K ++++ + N + + D
Sbjct: 215 EMDNVVLSLDGRKEVNDRMRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTRENLD 274
Query: 295 SPRDALNLIKI 305
D L+ +
Sbjct: 275 FSEDVLHFADL 285
>gi|282901591|ref|ZP_06309510.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Cylindrospermopsis raciborskii CS-505]
gi|281193517|gb|EFA68495.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Cylindrospermopsis raciborskii CS-505]
Length = 248
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 41/266 (15%), Positives = 84/266 (31%), Gaps = 49/266 (18%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
+ET + + +Q GC L C +C+ T K + T E++ ++ RS
Sbjct: 13 HSLETCGTVDGPGIRFVIFTQ-GCLLRCLYCHNPDTRDMKTGKETTVGELVTEIEKYRSY 71
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
+ G I G GEPL + V++
Sbjct: 72 MKFTGGGVTISG------------------GEPLLQPEFVREVFRQCQKLNI------HT 107
Query: 218 TLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
L TSGF ++ E ++ + + + + + ++ + L Y
Sbjct: 108 ALDTSGFPDLTTSKSVLEFVDLVLLDIKSFDPNTYLHVTGVSIEPTLR-----FAEYLQE 162
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL------- 327
N +V++ + D + L K + + K+ ++PF+ ++
Sbjct: 163 INK-PTWVRFVLVPHVTDGNENVHQLAKFVSQLTNVEKVEILPFHKLGEYKWHELGYHYE 221
Query: 328 -----CSDQKDIVTFSECIKRSGYSS 348
++I + K G
Sbjct: 222 LGNTIPPSLEEIEKVKDIFKHYGVKV 247
>gi|254973814|ref|ZP_05270286.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile QCD-66c26]
gi|255091201|ref|ZP_05320679.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile CIP 107932]
gi|255312858|ref|ZP_05354441.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile QCD-76w55]
gi|255515617|ref|ZP_05383293.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile QCD-97b34]
gi|255648711|ref|ZP_05395613.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile QCD-37x79]
gi|306518831|ref|ZP_07405178.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile QCD-32g58]
gi|317411750|sp|C9YHW3|HPDA_CLODR RecName: Full=4-hydroxyphenylacetate decarboxylase activating
enzyme; Short=Hpd-AE
gi|317411752|sp|C9XIS7|HPDA_CLODC RecName: Full=4-hydroxyphenylacetate decarboxylase activating
enzyme; Short=Hpd-AE
Length = 316
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 41/311 (13%), Positives = 84/311 (27%), Gaps = 38/311 (12%)
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + + D + P E TV C + GC++
Sbjct: 11 IFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP-ESWTVRPHMMFSELSCQY-ENGCTV 68
Query: 127 TCSFCYTGTQKLV------------RNLTAEEILLQVLLARSLLGDFPGCEDIEGM--VI 172
C G ++ + E + L P D
Sbjct: 69 CHGKCKNGALSFNLDNKPVIDWNICKDCESFECVNSCYYNAFKLCAKPYTVDELVQVIKR 128
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S + + V GEPL + + + L + I S ++
Sbjct: 129 DSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVN----IHTAIETSACVSNEVFNKIF 184
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
++I H + ++ + I R+ ++ G
Sbjct: 185 KDIDFAFIDIKH--MDREKHKEQTGVYNDLILENISNL---ANSDWNGRLVLRVPVISGF 239
Query: 293 NDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSE 339
NDS + ++I K +INL+PF+ +++ D++ + +
Sbjct: 240 NDSAENISDIISFMHKNNLIEINLLPFHRLGESKWIQLGKEYEYSDKGDIDEEHLEELQD 299
Query: 340 CIKRSGYSSPI 350
+G + +
Sbjct: 300 IFLDNGIACYV 310
>gi|85058965|ref|YP_454667.1| pyruvate formate lyase-activating enzyme 1 [Sodalis glossinidius
str. 'morsitans']
gi|84779485|dbj|BAE74262.1| pyruvate formate-lyase 1 activating enzyme [Sodalis glossinidius
str. 'morsitans']
Length = 246
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 38/269 (14%), Positives = 86/269 (31%), Gaps = 53/269 (19%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV----RNLTAEEILLQVLLARS 156
E+ + + Q GC + C +C R +T EEI+ +V+ R
Sbjct: 8 HSFESCGTVDGPGIRFIIFFQ-GCLMRCLYC-HNRDTWDTHGGREITVEEIMREVISYRH 65
Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
+ G G + + ++ + G++
Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRD---------------WFRAC----HAEGIN----- 101
Query: 217 ITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
+ T+GFV + E+ ++ + + +++D+ LV ++ L+ Y
Sbjct: 102 TCVDTNGFVRRYDPVIDELLEVTDLVMLDIKEMNDDIHQNLVGVSNHRTLD-----FARY 156
Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY----- 326
N R YV++ G +D + L + + + KI L+P++ ++
Sbjct: 157 LAKINK-RTWLRYVVVPGWSDDDKSVHMLGEFTQHMSNIEKIELLPYHELGKHKWIAMGE 215
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+ + + G+
Sbjct: 216 EYRLEGVKPPTTASMDHIRDILAGYGHKV 244
>gi|255654246|ref|ZP_05399655.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile QCD-23m63]
gi|296452531|ref|ZP_06894228.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP08]
gi|296881057|ref|ZP_06905000.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP07]
gi|296258636|gb|EFH05534.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP08]
gi|296427923|gb|EFH13827.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP07]
Length = 316
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 41/311 (13%), Positives = 87/311 (27%), Gaps = 38/311 (12%)
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + + D + P E TV C + GC++
Sbjct: 11 IFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP-ESWTVRPHMMFSELSCQY-ENGCTV 68
Query: 127 TCSFCYTGTQKLV------------RNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVI 172
C G ++ + E + L + E ++ +
Sbjct: 69 CHGKCKNGALSFNLDNKPVIDWNICKDCESFECVNSCYYNAFKLCAKAYTVDELVQVIKR 128
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S + + V GEPL + + + L + I S ++
Sbjct: 129 DSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVN----IHTAIETSACVSSEVFNKIF 184
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E+I H + N ++ + R+ ++ G
Sbjct: 185 EDIDFAFIDIKHMDREKHKEQTGVYNDL-----ILKNISNLANSDWNGRLVLRVPVISGF 239
Query: 293 NDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSE 339
NDS ++ ++I K +INL+PF+ +++ D+ + +
Sbjct: 240 NDSVKNISDIISFMHKNNLVEINLLPFHRLGESKWVQLGKEYEYSDKGDVDEGHLEELQD 299
Query: 340 CIKRSGYSSPI 350
+G + +
Sbjct: 300 IFLDNGIACYV 310
>gi|319791288|ref|YP_004152928.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315593751|gb|ADU34817.1| Radical SAM domain protein [Variovorax paradoxus EPS]
Length = 356
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 77/252 (30%), Gaps = 27/252 (10%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPS 174
C+ + +C FC G A + Q+ +AR+ + + P+
Sbjct: 115 TCIRYESR-KKSCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVMTTGTPN 173
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
+ + I+ D + D + + T G
Sbjct: 174 ATDRGAAILCESAFAIKAAVDIPIQGQCEPPDDDQWFHRMKAAGIDTLGM---------- 223
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
L V+ ++R+ ++P P+ + A G+ R +L G+ D
Sbjct: 224 -------HLEVVTPEVRDRIMPGKASVPVSRYMSAFEAAVGVFG--RGQVSTYILAGLGD 274
Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIR 351
+ L+ L ++PF P G + + + + ++ +R
Sbjct: 275 TREAILDTCDQLLARGVYPFVVPFVPISGTPLEDHPAPSPEFMKSLLAPLGERVVAAGLR 334
Query: 352 TPRGLDILAACG 363
+ DI A CG
Sbjct: 335 S---ADIKAGCG 343
>gi|153009561|ref|YP_001370776.1| molybdenum cofactor biosynthesis protein A [Ochrobactrum anthropi
ATCC 49188]
gi|151561449|gb|ABS14947.1| molybdenum cofactor biosynthesis protein A [Ochrobactrum anthropi
ATCC 49188]
Length = 345
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 36/215 (16%), Positives = 70/215 (32%), Gaps = 27/215 (12%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VS C C++C + D E+++ + + +
Sbjct: 30 VSVTDRCDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCTAFIDK 72
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
+ + + G GEPL N+ + S + + +T + S + E
Sbjct: 73 GVRKLRLTG-GEPLV-RKNIMHLIRQLSRHLKSGALDELTLTTNGSQLSRFADELAECGI 130
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ +SL + + + + + I+A + R+ V LK ND
Sbjct: 131 RRINVSLDTLDPEKFHQITRWGDLPRVLEGIEAAQR-----AGIRVKINAVALKDFNDH- 184
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
+ LI+ G + LI P E+ +DQ
Sbjct: 185 -EIPELIRWAHGRGMDMTLIETMPMGEIEFDRTDQ 218
>gi|281423385|ref|ZP_06254298.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302]
gi|281402721|gb|EFB33552.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302]
Length = 261
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 75/231 (32%), Gaps = 41/231 (17%)
Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
GC + C FC+ T Q R +TA+E+L Q RS G+ G G + + I
Sbjct: 45 GCPMRCLFCHNPDTWKQDKTRPMTADELLNQAEKYRSYWGEKGGITVSGGEALLQIDFLI 104
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
+S++ D+ F+++ + + +
Sbjct: 105 ELF-----------EKAHARSINTCLDTSAQPFTRKDTWFT-------KFERLMKATDTV 146
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
+ + + D L + L+ C Y + +V++ + D+
Sbjct: 147 LLDIKHIREDEHCKLTKFSNSNILD-----CARYLSDIQK-PVWIRHVLIPKLTDNDAYL 200
Query: 300 LNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVT 336
L LK + +I+++P++ +Y Q+ I
Sbjct: 201 HELAAFLKTLHNIERIDILPYHTLGTYKYEELHIDYPLKGIEPPTQERIDN 251
>gi|251799217|ref|YP_003013948.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2]
gi|247546843|gb|ACT03862.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2]
Length = 244
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 66/215 (30%), Gaps = 39/215 (18%)
Query: 121 QVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
GC+L C FC+ T R +T ++IL ++ G + G
Sbjct: 25 MQGCALQCQFCHNPDTWDTAAGRQVTVDDILEEIEPYLPYYRGSGGGITVTG-------- 76
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
GEP V + GL L +SGF
Sbjct: 77 ----------GEPTLQAPFVAALFKACKEKYGL-----HTALDSSGFCDPSHASELMNDT 121
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
L + + ++ + + S ++ + +V++ GI D
Sbjct: 122 DLVLLDLKQIDRDKHERLTSQPNDRILHFAKWL-----SSISKPVWIRHVLIPGITDHAE 176
Query: 298 DALNLIKILKGIPAKIN-----LIPFNPWPGCEYL 327
D L + + G+ +N L+P++ ++
Sbjct: 177 DLRLLGRFIGGL---VNVERLELLPYHRMGVYKWQ 208
>gi|332652790|ref|ZP_08418535.1| biotin synthase [Ruminococcaceae bacterium D16]
gi|332517936|gb|EGJ47539.1| biotin synthase [Ruminococcaceae bacterium D16]
Length = 331
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 29/208 (13%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
CS C +C + + + LL + V R +I
Sbjct: 70 KCSEDCKYCA----------QSAHYHTSLEESYPLLSTEELVKGAAENKRQGVLRY--SI 117
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V G D +S+ + +G+ ++ G ++ E + +
Sbjct: 118 VTSGRKLSDQEVDQACESIRAIREQVGIEV---CVSFGLLGE-EAFRKLKEAGASRVHCN 173
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L + + +E L A R + + + G+ ++ D +++
Sbjct: 174 LESSRRYFPQVCTTHTYNEKIETLKAAQRAGLSVCSGG--------ILGLGETMEDRIDM 225
Query: 303 IKILKGIPAK---INLIPFNPWPGCEYL 327
+ + + K +NL NP PG Y
Sbjct: 226 VLTARELGVKSVPVNL--LNPIPGTPYE 251
>gi|167758792|ref|ZP_02430919.1| hypothetical protein CLOSCI_01134 [Clostridium scindens ATCC 35704]
gi|167663532|gb|EDS07662.1| hypothetical protein CLOSCI_01134 [Clostridium scindens ATCC 35704]
Length = 473
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 28/254 (11%)
Query: 58 QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL- 116
+ ++ L Q + E L R E + K R T+
Sbjct: 63 KGLKKELGQKYEEGEIE-------DALADVIELTEAGRLFAEDA-YECMIEEVKKRKTVV 114
Query: 117 ---CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
C+ C+L C +C+ E R L F + +I
Sbjct: 115 KALCLHIAHDCNLACKYCFA---------EEGEY-----HGRRALMSFEVGKKALDFLIA 160
Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV 231
+ G + + V GEPL N+ VK ++ + + R T++T+G + +
Sbjct: 161 NSGNRHNLEVDFFGGEPLMNWQVVKDLVAYGREQEKIHDKHFRFTITTNGVLLNDEVQEF 220
Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
+ + +SL + + N K ++++ + N R +
Sbjct: 221 VNKEMDNVVLSLDGRKDVNDRMRPFRNGKGSYDLIVPKFQKLAKSRNQERYYVRGTFTRD 280
Query: 292 INDSPRDALNLIKI 305
D D L+ +
Sbjct: 281 NLDFSNDILHFADL 294
>gi|167390748|ref|XP_001739482.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165896755|gb|EDR24082.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 351
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 24/221 (10%)
Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLG 159
+E + ++ T +++ VGC+ TC FC +N + LQ+ A +G
Sbjct: 64 IEKKPMFHFLPQTMTYSIAT-VGCNFTCQFC--------QNWDISQCTLQIKEAGGDYIG 114
Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
K N ++ N V ++ + + + +
Sbjct: 115 KIERLGYPMSAQKVISEAKRRNCPVIAYT---YNEPTVFTEFALECGKLAHQEGMKNVFV 171
Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
+ + I + I L +++ + + P+ I C
Sbjct: 172 TNGYESKECIEAMKGIIDGMNIDLKGFTDEFYHSIT-GGHLQPVLETIKRCHQL-----G 225
Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFN 319
I +++ G NDS + N+ + + + P IP++
Sbjct: 226 IWIEITTLIIPGQNDSDEELKNIAQFIYNVDPC----IPWH 262
>gi|312792813|ref|YP_004025736.1| Radical SAM domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179953|gb|ADQ40123.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 453
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 27/240 (11%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C+ C L C +C+ + + L F + ++ +
Sbjct: 93 MCLHVAHDCDLRCRYCFASSGSFKQ--------------ERKLMSFDVGKKTIDFLLQNS 138
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGE 233
G + + V GEPL NFD VKK + A K TL+T+ +I
Sbjct: 139 GSRQNLEVDFFGGEPLLNFDVVKKIVEYARQEEKKYNKKISFTLTTNATNLSDDIIEYLN 198
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ + +S + + N + D + N +
Sbjct: 199 QNMENVVLSHDGRPQVNDFMRIDRNGNGTYSKITDNILRFIQKRNGKTYYVRGTFTAKNL 258
Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPW---PGCEY--LCSDQKDIVTFSECIKRSGYSS 348
D +D ++L + I P + S + I + + ++
Sbjct: 259 DFSKDVMHLYSLGIKE------ISIEPVVLDKSSPWAIRESHIERIKEEYDILAEEFINA 312
>gi|170769309|ref|ZP_02903762.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii
TW07627]
gi|170121961|gb|EDS90892.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii
TW07627]
Length = 265
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 48 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 106
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 107 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 142
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y + ++ YV++ G +D
Sbjct: 143 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKD-VKVWIRYVVVPGWSDD 196
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 197 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 256
Query: 342 KRSGYSS 348
++ G+
Sbjct: 257 EQYGHKV 263
>gi|120597257|ref|YP_961831.1| glycyl-radical activating family protein [Shewanella sp. W3-18-1]
gi|146291318|ref|YP_001181742.1| glycyl-radical activating family protein [Shewanella putrefaciens
CN-32]
gi|120557350|gb|ABM23277.1| glycyl-radical enzyme activating protein family [Shewanella sp.
W3-18-1]
gi|145563008|gb|ABP73943.1| glycyl-radical enzyme activating protein family [Shewanella
putrefaciens CN-32]
Length = 306
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 8/83 (9%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------L 327
+ ++ G ND + + + + + ++++L+P++ + +Y
Sbjct: 222 VAVRIPVIPGFNDDEQSIEAIARFVTHMKNVSRLHLLPYHNYGQNKYNLLGRTYDMIEIK 281
Query: 328 CSDQKDIVTFSECIKRSGYSSPI 350
++ + + + + G I
Sbjct: 282 PPEESRMHKYKDIVTSLGIDCVI 304
>gi|260681933|ref|YP_003213218.1| 4-hydroxyphenylacetate decarboxylase activating subunit
[Clostridium difficile CD196]
gi|260685531|ref|YP_003216664.1| 4-hydroxyphenylacetate decarboxylase activating subunit
[Clostridium difficile R20291]
gi|260208096|emb|CBA60347.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile CD196]
gi|260211547|emb|CBE01729.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
[Clostridium difficile R20291]
Length = 326
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 41/311 (13%), Positives = 84/311 (27%), Gaps = 38/311 (12%)
Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
F + + D + P E TV C + GC++
Sbjct: 21 IFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP-ESWTVRPHMMFSELSCQY-ENGCTV 78
Query: 127 TCSFCYTGTQKLV------------RNLTAEEILLQVLLARSLLGDFPGCEDIEGM--VI 172
C G ++ + E + L P D
Sbjct: 79 CHGKCKNGALSFNLDNKPVIDWNICKDCESFECVNSCYYNAFKLCAKPYTVDELVQVIKR 138
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
S + + V GEPL + + + L + I S ++
Sbjct: 139 DSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVN----IHTAIETSACVSNEVFNKIF 194
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
++I H + ++ + I R+ ++ G
Sbjct: 195 KDIDFAFIDIKH--MDREKHKEQTGVYNDLILENISNL---ANSDWNGRLVLRVPVISGF 249
Query: 293 NDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSE 339
NDS + ++I K +INL+PF+ +++ D++ + +
Sbjct: 250 NDSAENISDIISFMHKNNLIEINLLPFHRLGESKWIQLGKEYEYSDKGDIDEEHLEELQD 309
Query: 340 CIKRSGYSSPI 350
+G + +
Sbjct: 310 IFLDNGIACYV 320
>gi|260776178|ref|ZP_05885073.1| pyruvate formate-lyase activating enzyme [Vibrio coralliilyticus
ATCC BAA-450]
gi|260607401|gb|EEX33666.1| pyruvate formate-lyase activating enzyme [Vibrio coralliilyticus
ATCC BAA-450]
Length = 215
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYL--------- 327
++ YV++ G D A L + +K + K+ L+P++ ++
Sbjct: 130 GQKTWIRYVVVPGYTDDEEAAHMLGEFIKDMDNIEKLELLPYHKLGAHKWEALGLDYPLE 189
Query: 328 ---CSDQKDIVTFSECIKRSGYSS 348
++ + +++ +
Sbjct: 190 GVNPPSKETMDNIVSILEQYHSNV 213
>gi|119475089|ref|ZP_01615442.1| radical SAM domain protein [marine gamma proteobacterium HTCC2143]
gi|119451292|gb|EAW32525.1| radical SAM domain protein [marine gamma proteobacterium HTCC2143]
Length = 343
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 47/339 (13%), Positives = 92/339 (27%), Gaps = 73/339 (21%)
Query: 39 WKWIYVRGIRDFQGMSDI--------SQEVRHLLNQHFSIIYPE-IVDEKISCDGTR--- 86
W+ IRD + + ++ +R F + P VD + D +
Sbjct: 21 WQHALANVIRDPEELFNLLELDKSKLPDALRGC--DDFPLQVPRAFVDRMVKGDWSDPLL 78
Query: 87 ------KWLLRFPARCIGG------PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
L I + R L VS GC++ C +C+
Sbjct: 79 QQILPLGQELDLHPGFSNDPLLELSDNPIPGLIHKYHGRVLLIVSG--GCAINCRYCFRR 136
Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
N ++ Q L I +++ G G+PL
Sbjct: 137 HFPYQENNPSQREWQQAL------------------DYIRQDNSIKEVILSG-GDPLAAN 177
Query: 195 DNVKK----SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDL 250
DN+ + ++ L R + + + +H+
Sbjct: 178 DNMLRDLTTRIADIPHVEILRVHSRMPVVIPQRITSPSMNWLTNTRLTPVMVIHSNH--- 234
Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
P + + + + + + V+L GIND+P L L K L
Sbjct: 235 -----PNEIDHHVIEALQTLKR-----EGVTLLNQTVLLAGINDNPEALLALSKRLFAAG 284
Query: 311 AKINLIPF-----NPWPGCEYLCSDQKDIVTFSECIKRS 344
+P+ + G + ++ ++
Sbjct: 285 V----LPYYLHMLDKVSGAAHFEVTERRAKELITILRNQ 319
>gi|282599809|ref|ZP_05971952.2| pyruvate formate-lyase 1-activating enzyme [Providencia rustigianii
DSM 4541]
gi|282567912|gb|EFB73447.1| pyruvate formate-lyase 1-activating enzyme [Providencia rustigianii
DSM 4541]
Length = 197
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 23/147 (15%)
Query: 216 RITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
L T+GFV + E+ ++ + L + +++ LV ++ LE
Sbjct: 52 HTCLDTNGFVRRYDPVIDELMEVTDLVMLDLKQLDDEIHQKLVGVSNHRTLE-----FAR 106
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY---- 326
Y N ++ YV++ G +D L + +K + KI L+P++ ++
Sbjct: 107 YLAKRN-QKTWIRYVVVPGWSDDDHSVHMLGEFVKDMNNIEKIELLPYHELGKHKWETMG 165
Query: 327 --------LCSDQKDIVTFSECIKRSG 345
+ + ++ G
Sbjct: 166 EEYKLDGVKPPSKDVMERVKNILESYG 192
>gi|315425435|dbj|BAJ47099.1| molybdenum cofactor biosynthesis protein A [Candidatus
Caldiarchaeum subterraneum]
Length = 347
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 30/209 (14%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+ C FC L V + + E++ ++ VG
Sbjct: 33 LSVTDRCNFRCDFCM--------------PLHPVWIPHK---EILTYEEMARVIRILVGM 75
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI 235
++ + + G GEPL D ++K + + S G+ I+++T+G A++ E
Sbjct: 76 NVTKVRLSG-GEPLMRRD-LEKGVKLISSIPGVE----TISMTTNGYFLEEKAAQLKEAG 129
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+ +SLH++ + +V RK ++D R + I V+ +G ND
Sbjct: 130 LQSVTVSLHSLKPERFEKIV--GRKDVFSKVLDGLRE-AKKVGLQPIKINCVVTRGCND- 185
Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGC 324
+ L+ +++ + I I + P+ G
Sbjct: 186 -DEILDFVELGRQSGFSIRFIEYMPFDGR 213
>gi|332652526|ref|ZP_08418271.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcaceae
bacterium D16]
gi|332517672|gb|EGJ47275.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcaceae
bacterium D16]
Length = 242
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 29/207 (14%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC L C +C+ + + + L + LL P E G V S G +
Sbjct: 27 GCPLRCLYCH---NPDTQTFSGGQETTPEALVKRLLRFRPYFESSGGGVTFSGGEPLGQP 83
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ L + V + S G + V+ +
Sbjct: 84 DFLLACLKLLKAEGVHTCID----------------TSGVGQGDYEDILKHTDLVLYDVK 127
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
H + + + P ++A R + +V++ G+ DSP +L
Sbjct: 128 HHQREDYRK---ITGREMDPTLAFVEAVR-----KANVPMWVRHVVVPGLTDSPEHLTSL 179
Query: 303 IKILKGIP--AKINLIPFNPWPGCEYL 327
+ + +P K+ L+P++ +Y
Sbjct: 180 GEYIATLPRVEKVELLPYHTLGVHKYQ 206
>gi|303242022|ref|ZP_07328514.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
gi|302590440|gb|EFL60196.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
Length = 455
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 67/230 (29%), Gaps = 16/230 (6%)
Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
+ D I LC+ C+L C +C+
Sbjct: 58 REACKDINELVEKGLLFTPEFDKETIINRVNDYNGIKALCLHVAHDCNLMCEYCFASKGS 117
Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
+A+SL+ + ++ +V S RK I G GEPL NFD +
Sbjct: 118 YK-------------VAKSLMPAEVAFKAVDFVVNNSGTRKNVEIDFFG-GEPLLNFDVI 163
Query: 198 KKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
K+++ + S T++T+G + E + IS+ I
Sbjct: 164 KQTVEYSKKVQERSGKNIYFTITTNGTLLDDEKIKYINENMNNVVISIDGRKEVHDAIRY 223
Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
K + ++ + D +D +L +
Sbjct: 224 DAGHKGTYDKILKNALKLVEGRKGKSYFIRGTFTSRNLDFSKDVFHLADL 273
>gi|254478058|ref|ZP_05091442.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
gi|214036062|gb|EEB76752.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
Length = 259
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L C +C+ T R L+ G + I+ ++ S
Sbjct: 96 MCLNVAHDCNLRCKYCFASTGDFKG-------------GRKLMDFETGRKAIDFLIKSSG 142
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
R+ I G GEPL NF+ VK+ + + + T++T+ +
Sbjct: 143 KRRNIEIDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKNIKFTITTNAVLLDDEKIEYFN 201
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
E + +SL + V + ++++ + + +
Sbjct: 202 ENFSNVVLSLDGRKEVNDQMRVRADGSGTYDVIVPKIQKFVKARGKKEYYV 252
>gi|169350284|ref|ZP_02867222.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552]
gi|169293067|gb|EDS75200.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552]
Length = 298
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 74/242 (30%), Gaps = 42/242 (17%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C + C C + N + E Q + + + G ++
Sbjct: 82 DKC-VGCLQCVSSCFN---NALSHEGKYQ------EIDEIVDICLQDQDFYEESGGGVTI 131
Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239
GM +P + V K + + T+G++ + ++L
Sbjct: 132 SGGEGMAQPKFLKELVTKLKKHNLH----------VAIETTGYIQSDIFRELAVMFDLLL 181
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
H +N N ++ L A H L + + NDS DA
Sbjct: 182 FDVKHYDTNKHYEGTKVHNELI-IDNLTWAIDHGLTLLPRIPV------IPDFNDSLNDA 234
Query: 300 LNLIKILKGIPA-KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGY 346
+NL ++L + A K+ L+PF+ + +Y +D+ + + G
Sbjct: 235 INLSELLIKVKAKKVQLLPFHQFGEKKYELLQKEYALKNKKALYPEDLKAYQKIFLDKGI 294
Query: 347 SS 348
Sbjct: 295 DC 296
>gi|213584192|ref|ZP_03366018.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
Length = 147
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY--- 326
Y N ++ YV++ G +D A L + + + KI L+P++ ++
Sbjct: 56 QYLSKKN-VKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAM 114
Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348
++ + +++ G+
Sbjct: 115 GEEYKLDGVKPPKKETMERVKGILEQYGHKV 145
>gi|312898135|ref|ZP_07757526.1| biotin synthase [Megasphaera micronuciformis F0359]
gi|310620632|gb|EFQ04201.1| biotin synthase [Megasphaera micronuciformis F0359]
Length = 341
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 67/250 (26%), Gaps = 29/250 (11%)
Query: 116 LCVSSQVG---CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
C + CS CSFC + + L
Sbjct: 66 CCAIAAARSGKCSENCSFCA------------QSAFHHANIPVFPLISTEEIITCARKAK 113
Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
+ + S + EP +F+N+ +++ + D++G+ + G +
Sbjct: 114 AAGATRFSIVTGGRSVEPGPDFENIIRAIPVIRDTIGIEI------CCSLGLINKTQLKA 167
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+ H+ + I + + + + +
Sbjct: 168 LKAAG--ITRYHSNIETAPSYFPSICTTHTFADKEKMVKEVIAAGLRPCCGGIFGLGESQ 225
Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY---LCSDQKDIVTFSECIKRSGYSSP 349
+ A L ++ +N+ NP G +I+ ++ +
Sbjct: 226 HQRIEMAYTLKRLGID-SVPVNI--LNPIKGTALENVQPPSPWEILRIFSVLRFILPKAQ 282
Query: 350 IRTPRGLDIL 359
IRT G +I
Sbjct: 283 IRTAGGREIN 292
>gi|294636920|ref|ZP_06715247.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC
23685]
gi|291089873|gb|EFE22434.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC
23685]
Length = 246
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPW 321
++ CR+ + ++ YV++ G +D A L + K + KI L+P++
Sbjct: 148 HRTLEFCRYLAKRN--QKTWIRYVVVPGWSDDEASARLLGEFTKDMKNIEKIELLPYHEL 205
Query: 322 PGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
++ ++ + ++ G+
Sbjct: 206 GKHKWEAMGETYQLGDVKPPSREIMERVKGILEEYGHKV 244
>gi|323691701|ref|ZP_08105962.1| radical SAM domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|323504245|gb|EGB20046.1| radical SAM domain-containing protein [Clostridium symbiosum
WAL-14673]
Length = 465
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 18/198 (9%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + + +I + G
Sbjct: 109 CLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANSG 154
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ + V GEPL N++ VK+ + L K R TL+T+G + I
Sbjct: 155 ARRNLEVDFFGGEPLMNWEVVKQLVEYGRSQEELHNKKFRFTLTTNGVLLNDEIMEFSNR 214
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +SL + + N + ++++ + + R F N
Sbjct: 215 EMSNVVLSLDGRQDVNDRMRPFRNGRGSYDLIVPKFQKFAKER-GDRDYFVRGTFTRNNL 273
Query: 294 DSPRDALNLIKILKGIPA 311
D D L+ + +
Sbjct: 274 DFADDVLHFADLGFEKMS 291
>gi|323485627|ref|ZP_08090966.1| hypothetical protein HMPREF9474_02717 [Clostridium symbiosum
WAL-14163]
gi|323401038|gb|EGA93397.1| hypothetical protein HMPREF9474_02717 [Clostridium symbiosum
WAL-14163]
Length = 465
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 18/198 (9%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + + +I + G
Sbjct: 109 CLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANSG 154
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ + V GEPL N++ VK+ + L K R TL+T+G + I
Sbjct: 155 ARRNLEVDFFGGEPLMNWEVVKQLVEYGRSQEELHNKKFRFTLTTNGVLLNDEIMEFSNR 214
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +SL + + N + ++++ + + R F N
Sbjct: 215 EMSNVVLSLDGRQDVNDRMRPFRNGRGSYDLIVPKFQKFAKER-GDRDYFVRGTFTRNNL 273
Query: 294 DSPRDALNLIKILKGIPA 311
D D L+ + +
Sbjct: 274 DFADDVLHFADLGFEKMS 291
>gi|313889173|ref|ZP_07822828.1| biotin synthase [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312844821|gb|EFR32227.1| biotin synthase [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 321
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 38/272 (13%)
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
++ + + I E ++ S R + + T+
Sbjct: 5 NLKEKIKNGYVIKREEAIEVYNSD-YESLTAAADELREYFCGNDFDVC--------TIIN 55
Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
+ CS C FC + N+ ++L + ++ + L + MV G
Sbjct: 56 AKSGKCSENCKFCA-QSAHYHTNVKEYDLLDEEIIVKDALDKYKRGIPRYSMVASGKGLT 114
Query: 179 ISNI--VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
+I + + ++K +S S + ++ E
Sbjct: 115 PKDIDKICSITKKIYEEAPDIKVCISGGIISE-----------------ESFEKLKEAGI 157
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ +L N I ++ + A + + I + D
Sbjct: 158 TRIHNNLETSRNFFPEICTTHTYDQKIDTIKAAQEAGMEICSGGLIGLG----EDFTDRI 213
Query: 297 RDALNLIKI-LKGIPAKINLIPFNPWPGCEYL 327
AL L + + +P INL NP
Sbjct: 214 DMALELRDLDVHSVP--INL--LNPIKNTPLE 241
>gi|261339237|ref|ZP_05967095.1| hypothetical protein ENTCAN_05472 [Enterobacter cancerogenus ATCC
35316]
gi|288319093|gb|EFC58031.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter
cancerogenus ATCC 35316]
Length = 246
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 28/244 (11%), Positives = 77/244 (31%), Gaps = 46/244 (18%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
+ + E + D+ G + E+ +
Sbjct: 88 VRDWFRACRKEG----------IHTCLDTNGFVRRY-----------DPVIDELLEVTDL 126
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
+ + L +++++ LV ++ ++ ++ + YV++ G +D
Sbjct: 127 VMLDLKQMNDEIHQNLVGVSN----HRTLEFAKYI--SGKGIKTWIRYVVVPGWSDDDDS 180
Query: 299 ALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRS 344
A L + + + KI L+P++ ++ ++ + +++
Sbjct: 181 AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQY 240
Query: 345 GYSS 348
G+
Sbjct: 241 GHKV 244
>gi|325288756|ref|YP_004264937.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
gi|324964157|gb|ADY54936.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
Length = 341
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 60/189 (31%), Gaps = 17/189 (8%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
C+ C +C R + ++ + ++ G+ + M P ++I
Sbjct: 34 RRCNFKCFYCMHA----TRGVAGGQLDREGFRIENMSGELYTKIIKDIMAFPQPPKRI-- 87
Query: 182 IVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
G+GEPL N D N+ K L G + +T + +
Sbjct: 88 -AFSGLGEPLMNKDLPNMIKELR----DAGFTGRIDVLTNGVLLTPKMADALVAAGISRI 142
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV--MLKGINDSPR 297
IS+ AV+ + + L+D + + + + +LK ND +
Sbjct: 143 QISIQAVNKEGYQE--NSGVDIDFKALLDNISYLYKHKGNASVFIKIIDSLLKNKNDEKK 200
Query: 298 DALNLIKIL 306
+
Sbjct: 201 FYELFGNLC 209
>gi|210616298|ref|ZP_03291026.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787]
gi|210149853|gb|EEA80862.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787]
Length = 467
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 41/251 (16%), Positives = 79/251 (31%), Gaps = 20/251 (7%)
Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
S V+ L + + + E I+ L I V + L
Sbjct: 53 SAYVKEQLGEKYKEDELKEALEDIAELTKAGQLFTKDIYE----AYIGEVKSRKTVVKAL 108
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + + +I + G
Sbjct: 109 CIHIAHDCNLACQYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANSG 154
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ + V GEPL N+ VK ++ + L R TL+T+G + + +
Sbjct: 155 NRKNLEVDFFGGEPLMNWQVVKDLVAYGREQEKLHDKHFRFTLTTNGVLLNDEVKEFVNK 214
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +SL + N K ++++ + N + + D
Sbjct: 215 EMDNVVLSLDGRKEVNDKMRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTRDNLD 274
Query: 295 SPRDALNLIKI 305
+D L+ +
Sbjct: 275 FSKDVLHFADL 285
>gi|167768087|ref|ZP_02440140.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
gi|167710416|gb|EDS20995.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
gi|291561083|emb|CBL39883.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing
bacterium SSC/2]
Length = 300
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 44/146 (30%), Gaps = 18/146 (12%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+ T+G++ L + + ++ + +
Sbjct: 158 HTAIETTGYIKKEIFRELAPMFDLLLFDVKHYDSDKHYEGTHVHNELIIENLAW-----A 212
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY----LCSD 330
+S + ++ NDS DA + +L + A K+ L+PF+ + +Y
Sbjct: 213 ISQGIEVLPRIPVIPDFNDSLDDAKGIAALLNQVGAKKVQLLPFHQFGENKYHLLGKTYS 272
Query: 331 QKDIVT--------FSECIKRSGYSS 348
+++ + +G
Sbjct: 273 YENVKALHPEDLTDYQRIFLDAGIDC 298
>gi|1353659|gb|AAC44155.1| YfgB [Pseudomonas aeruginosa]
Length = 31
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRM 33
K +L+G+ + ELE+ IG R
Sbjct: 8 KVNLLGLTQPELEQFFESIG----EKRF 31
>gi|213609402|ref|ZP_03369228.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 122
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY--- 326
Y N ++ YV++ G +D A L + + + KI L+P++ ++
Sbjct: 31 QYLSKKN-VKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAM 89
Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348
++ + +++ G+
Sbjct: 90 GEEYKLDGVKPPKKETMERVKGILEQYGHKV 120
>gi|325279458|ref|YP_004252000.1| Biotin synthase [Odoribacter splanchnicus DSM 20712]
gi|324311267|gb|ADY31820.1| Biotin synthase [Odoribacter splanchnicus DSM 20712]
Length = 326
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 31/243 (12%), Positives = 66/243 (27%), Gaps = 35/243 (14%)
Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
++ + CS C +C + N+ E++ +
Sbjct: 46 RRFDTCSIINARSGRCSENCKWCA-QSALFKTNIEEYELVDE------------KTCLDL 92
Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
G + V G N D + L L + +
Sbjct: 93 ARSNADYGVDKFSFVTSGRALSDKNIDRICTFAVKIKSQSDLQLCASMGLLKKA----QL 148
Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
++ + +L + ++ + +E + A + + I
Sbjct: 149 QKLMDAGITRYHCNLESSADYFGTLCTSHTPADKIETIRAAQEIGMEVCSGGIIGMG--- 205
Query: 289 LKGINDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
+ + D AL L ++ +K IP IN+ NP PG + ++
Sbjct: 206 -ESMEDRIDLALMLRELGIKSIP--INI--LNPIPGTPLEGT---------ARLEDEEIL 251
Query: 348 SPI 350
+ I
Sbjct: 252 TTI 254
>gi|317047551|ref|YP_004115199.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b]
gi|316949168|gb|ADU68643.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b]
Length = 246
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 32/240 (13%), Positives = 73/240 (30%), Gaps = 38/240 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C +C + + + L + +L G V S G I
Sbjct: 29 GCLMRCLYC-HNRDTW--DTHGGKEITVEDLMKDVLSYRHFMNASGGGVTASGGEAILQA 85
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ + + + D+ G + E+ ++ +
Sbjct: 86 EF--VRDWFRACRA--EGIHTCLDTNGFVRRY-----------DPVIDELLEVTDLVMLD 130
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L +++D+ ILV ++ +D R+ R YV++ G +D L
Sbjct: 131 LKQINDDIHQILVGVSN----HRTMDFARYLQK--KGTRTWIRYVVVPGYSDDDDSVHRL 184
Query: 303 IKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
+ + + KI L+P++ ++ ++ + + G+
Sbjct: 185 GEFTQDMDNIEKIELLPYHELGKHKWIAMGEEYKLEGVKPPTKETMERVKNILSGYGHQV 244
>gi|253567221|ref|ZP_04844671.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251944052|gb|EES84571.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 455
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 12/225 (5%)
Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS-SQVGCSLTCSFCY 132
+I+ ++ ET+ E T+ C+L C +C
Sbjct: 20 QILHYLQKYKFLKENEFIGEKVKTEFGEITETMVRREVENLTVLTFEVTERCNLRCRYCA 79
Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
G + E L A+ +L G + + + + + + G GEPL
Sbjct: 80 FGDLYYGYDERKGENLD-FPKAKQILDFLFGIWEKKPHLSVA---RTLTVGFYG-GEPLM 134
Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
N D +K+ +S + + + + E L +SL D +
Sbjct: 135 NMDLIKQIVSYIDEHKPEGMKFAYNMTTNAMLLRVYQDFLVEHKFHLLVSLDGTKADDCH 194
Query: 253 ILVPINRKYPLEMLIDACRH----YPGLSNARRITFEYVMLKGIN 293
+ +N K + D ++ YP ++F V+ N
Sbjct: 195 RVT-VNGKSSFVQVFDQIKNLQFCYPEYFKKY-VSFNSVIHSESN 237
>gi|160941098|ref|ZP_02088436.1| hypothetical protein CLOBOL_05992 [Clostridium bolteae ATCC
BAA-613]
gi|158436047|gb|EDP13814.1| hypothetical protein CLOBOL_05992 [Clostridium bolteae ATCC
BAA-613]
Length = 482
Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + + +I + G
Sbjct: 125 CLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANSG 170
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ V GEPL N+D VK+ + K R TL+T+G + +
Sbjct: 171 NREHLEVDFFGGEPLMNWDVVKRLVEYGRSQEEAHHKKFRFTLTTNGVLLNDEVMEFCNR 230
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +SL + + N ++++ + + + D
Sbjct: 231 EMSNVVLSLDGRKDVNDKMRPFRNGSGSYDLIVPKFQKFADSRKQMNYYVRGTFTRNNLD 290
Query: 295 SPRDALNLIKI 305
D L+ +
Sbjct: 291 FADDVLHYADL 301
>gi|320535961|ref|ZP_08036025.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis
F0421]
gi|320147188|gb|EFW38740.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis
F0421]
Length = 239
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 27/188 (14%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC L C +C+ N + E+ +I S
Sbjct: 26 GCPLRCKYCH--------NCDTW--------FQKDAKFVETAEETFEKIIKYKRFIRSGG 69
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V + GEPL + V + + G+ + TSG N A L +
Sbjct: 70 VTVTGGEPLMQPEYVCELFKLCK-KEGI-----HTAIDTSGIYLNDAVREALKVTDLVLL 123
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
+ ++ ++ + + P+ + + +V++ GI D P D +
Sbjct: 124 DYKAADPETHLELTGVPQQPILNFLAYLCEI-----NMPMWIRHVVIPGITDKPEDLEKI 178
Query: 303 IKILKGIP 310
+K +P
Sbjct: 179 ASFIKTLP 186
>gi|289803447|ref|ZP_06534076.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 116
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY--- 326
Y N ++ YV++ G +D A L + + + KI L+P++ ++
Sbjct: 25 QYLSKKN-VKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAM 83
Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348
++ + +++ G+
Sbjct: 84 GEEYKLDGVKPPKKETMERVKGILEQYGHKV 114
>gi|261364596|ref|ZP_05977479.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa ATCC
25996]
gi|288567181|gb|EFC88741.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa ATCC
25996]
Length = 270
Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 32/244 (13%), Positives = 70/244 (28%), Gaps = 50/244 (20%)
Query: 123 GCSLTCSFCY-------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
GC + C +C+ Q +T E++ QV+ R L G G
Sbjct: 51 GCLMRCLYCHNRDTWDLHTEQAQE--MTVPEVMKQVMSYRHYLRATGGGVTATGGEPLLQ 108
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
+ + D + DS G + I +
Sbjct: 109 YEFVRDWFTA-----CYEHD-----IHTCLDSNGYALHYDSILDD-----------LLDH 147
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L + ++ +LV + + + YV++ G D
Sbjct: 148 TNLVMLDLKQIDPEIHKVLV------GIPNTKTLKFAHYLAERKQPARVRYVVVPGYTDD 201
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
R A L + + + + L+P++ ++ ++ I+ +
Sbjct: 202 DRSAHLLGEFIADMDNIEMVELLPYHELGAHKWALCGDTYKLTGVHPPPKETILKIKSIL 261
Query: 342 KRSG 345
+ G
Sbjct: 262 ESYG 265
>gi|261368422|ref|ZP_05981305.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176]
gi|282569543|gb|EFB75078.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176]
Length = 484
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 20/192 (10%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L CS+C+ K + L F + ++ G
Sbjct: 103 CLHVAHTCNLNCSYCFAAQGKF--------------HGEAGLMSFETGKQALDFLVAHSG 148
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRR-ITLSTSGFVPNIARVGEE 234
+ + V GEPL NF+ K+ ++ A + R +T + G + + +
Sbjct: 149 TRRNLEVDFFGGEPLMNFEVCKQLVAYARSIEKAAGKNFRFTLTTNGIGLTDEVIQWANQ 208
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA----RRITFEYVMLK 290
+ +SL V + + ++ + R TF + +
Sbjct: 209 ECYNVVLSLDGRKEVNDRFRVDLAGNGSYDRIVPKFQKLVKARGGKGYYMRGTFTHHNVD 268
Query: 291 GINDSPRDALNL 302
ND A +L
Sbjct: 269 FTNDLFHMADDL 280
>gi|225548076|ref|ZP_03769361.1| hypothetical protein RUMHYD_00055 [Blautia hydrogenotrophica DSM
10507]
gi|225040752|gb|EEG50998.1| hypothetical protein RUMHYD_00055 [Blautia hydrogenotrophica DSM
10507]
Length = 454
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 16/191 (8%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ + + R L+ G + ++ ++ S
Sbjct: 99 CLHIAHDCNLACRYCFAEEGEYHGH-------------RELMSYEVGKQALDFLIANSGS 145
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
R+ + G GEPL N+ VK+ + + L R TL+T+G I
Sbjct: 146 RRNLEVDFFG-GEPLMNWKVVKELVRYGREQEKLHDKNFRFTLTTNGVALNDEIMEFCNR 204
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
+ +S+ + ++++ + + N + + D
Sbjct: 205 EMGNVVLSVDGRKEVHDFMRPFPKGAGSYDLILPKFQKFAESRNQDKYYVRGTFTRHNLD 264
Query: 295 SPRDALNLIKI 305
+D L+L +
Sbjct: 265 FSKDVLHLADL 275
>gi|213025441|ref|ZP_03339888.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 115
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY--- 326
Y N ++ YV++ G +D A L + + + KI L+P++ ++
Sbjct: 24 QYLSKKN-VKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAM 82
Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348
++ + +++ G+
Sbjct: 83 GEEYKLDGVKPPKKETMERVKGILEQYGHKV 113
>gi|212709771|ref|ZP_03317899.1| hypothetical protein PROVALCAL_00819 [Providencia alcalifaciens DSM
30120]
gi|212687582|gb|EEB47110.1| hypothetical protein PROVALCAL_00819 [Providencia alcalifaciens DSM
30120]
Length = 197
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 216 RITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
L T+GFV + ++ ++ + L + +++ LV ++ LE
Sbjct: 52 HTCLDTNGFVRRYDPVIDELMDVTDLVMLDLKQLDDEIHQKLVGVSNHRTLE-----FAR 106
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY---- 326
Y N ++ YV++ G +D L + +K + KI L+P++ ++
Sbjct: 107 YLAKRN-QKTWIRYVVVPGWSDDDHSVHMLGEFVKDMDNIEKIELLPYHELGKHKWETMG 165
Query: 327 --------LCSDQKDIVTFSECIKRSG 345
++ + ++ G
Sbjct: 166 EEYKLDGVRPPSKEVMERVKSILESYG 192
>gi|331646167|ref|ZP_08347270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605]
gi|331044919|gb|EGI17046.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605]
Length = 255
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +++ R + G G
Sbjct: 38 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKELVTYRHFMNASGGGVTASGGEAILQAEF 96
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 97 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 132
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 133 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWSDD 186
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 187 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 246
Query: 342 KRSGYSS 348
++ G+
Sbjct: 247 EQYGHKV 253
>gi|302335812|ref|YP_003801019.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
7084]
gi|301319652|gb|ADK68139.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
7084]
Length = 314
Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 37/246 (15%)
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
C C T + V + A + + + + + + V
Sbjct: 89 KACLECET--IECVNSCAAGAL-------KQPVREMTVDGLLGVLDRDRSNWGSDGGVTF 139
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GEPL D + + L G + + TSGF + + A
Sbjct: 140 TGGEPLMQSDFLVEVLK------GCRKTWIHTAIETSGFTSTERFLEVFKRIDFAFVDMK 193
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIK 304
+D ++ + I A +N R+ + G NDS +A +I
Sbjct: 194 NMDDEAHVWGTGVSNKQILRNISAL----AQTNWPGRLVLRVPTIAGYNDSDENARQVID 249
Query: 305 IL-KGIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYSSPIR 351
+ + +INL+ F+ ++ D + + + +G + +
Sbjct: 250 FMNENDLYEINLLKFHRMGQTKWEQLGLEYEYANKGDMDDERMSELQDMYLDAGIACYV- 308
Query: 352 TPRGLD 357
G D
Sbjct: 309 ---GDD 311
>gi|169335672|ref|ZP_02862865.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM
17244]
gi|169258410|gb|EDS72376.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM
17244]
Length = 454
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 18/237 (7%)
Query: 46 GIRDFQGMS--DISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI 103
+ D M+ + + + SI+ + +E+I L R ++
Sbjct: 21 LVYDVDEMTYDVLDYYKKESSEKIVSILKSKYDEEEIKEVIGELKELEAENRLYTPEKKV 80
Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
+ +C+ C+L C +C+ + + +
Sbjct: 81 NRKLYEKGIVKAMCLHVSHDCNLACRYCFASGGNFN--------------MKKEVMNIET 126
Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLST 221
+ +I + G K+ V GEPL NFD VKK++ A + + +T +
Sbjct: 127 AKKAIDFIISNSGNKVHLEVDFFGGEPLLNFDVVKKTVEYAKEEAKKHNKIFRFTLTTNC 186
Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
I + + +SL N K +++I+ + +
Sbjct: 187 VLLNDEIIDYLNKEMYNVVLSLDGRKEINDYTRPTANGKGSYDLIIENIKKVAKSRD 243
>gi|296210156|ref|XP_002751855.1| PREDICTED: dipeptidyl aminopeptidase-like protein 6-like
[Callithrix jacchus]
Length = 555
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 22/216 (10%), Positives = 50/216 (23%), Gaps = 6/216 (2%)
Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
G + + EK +S++ + R + +++ +
Sbjct: 135 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSAS 194
Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
++ + N L ++VKK++ R I
Sbjct: 195 FSHSMEFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAIHDRQMPK---VEYRTI 251
Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGL 276
+ I + + + R P + + A Y
Sbjct: 252 EIDDYNLPMQILKPATFTDTTHYLCSWVFCDHKRGGWHPDSGILHDRLTRRHAVDGYQD- 310
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
R+ + + G +D D K
Sbjct: 311 -TEHRLAGAWNLHTGPSDGAEDCSTYSNFTPQRGCK 345
>gi|256545760|ref|ZP_05473116.1| pyruvate formate-lyase activating enzyme [Anaerococcus vaginalis
ATCC 51170]
gi|256398456|gb|EEU12077.1| pyruvate formate-lyase activating enzyme [Anaerococcus vaginalis
ATCC 51170]
Length = 320
Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+ T G+ P + + V L + + +++ + + R+
Sbjct: 167 NTAIETCGYTPRKSLDLIKDHVDLFLFDIKQMDPVKHKYWTGVNNERI---LSNLRYLLE 223
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEYLC 328
R+ +LKG+NDS + ++ L+ N L+P++ + +Y
Sbjct: 224 CGKKVRVR--MPILKGVNDSHEEIKAVVDFLEDFKCFKNFDGIDLLPYHRYGVGKYEQ 279
>gi|161503903|ref|YP_001571015.1| hypothetical protein SARI_01993 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865250|gb|ABX21873.1| hypothetical protein SARI_01993 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 190
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY-------- 326
+ ++ YV++ G +D A L + + + KI L+P++ ++
Sbjct: 103 TKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK 162
Query: 327 ----LCSDQKDIVTFSECIKRSGYSS 348
++ + +++ G+
Sbjct: 163 LDGVKPPKKETMERVKGILEQYGHKV 188
>gi|77919293|ref|YP_357108.1| Mg-dependent DNase [Pelobacter carbinolicus DSM 2380]
gi|77545376|gb|ABA88938.1| Mg-dependent DNase [Pelobacter carbinolicus DSM 2380]
Length = 464
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 70/265 (26%), Gaps = 27/265 (10%)
Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
+RH + I + D + + G I + R +L
Sbjct: 226 PALLRHTAEEMARIKGLTVEDIARVTNLNV-------YQLFGIGSVDLATKIAYRIRNSL 278
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
++ CS C FC + L E
Sbjct: 279 YLNITNRCSNACVFCAK--------------FRDFAVKGHQLKLDHEPSVEEIKQAIGDP 324
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
R IV G GEPL D V + + G+ + + NI
Sbjct: 325 RNYEEIVFCGYGEPLLRLD-VIREIGTWLHRQGVPVRINTDGQANLVYGRNILPELGTFV 383
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
++ISL+A + + E A + + + + ++
Sbjct: 384 DAISISLNAADAATYQKI---CQSCFGEDGYQAVKDFIKEAKFHIPSVTASVVAMPGIDV 440
Query: 297 RDALNLIKILKGIPAKINLIPFNPW 321
++++ + ++ P+N
Sbjct: 441 EACRHIVEQELKVNFRVR--PYNEV 463
>gi|304317007|ref|YP_003852152.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778509|gb|ADL69068.1| Radical SAM domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 454
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C++ C+L CS+C+ T R L+ G + I+ ++ S
Sbjct: 96 ICLNVAHDCNLRCSYCFASTGDFKG-------------GRKLMSYEVGKKAIDFLIKNSG 142
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
RKI + G GEPL NF+ VKK + + T++T+G
Sbjct: 143 NRKIVEVDFFG-GEPLLNFEVVKKIVEYGRQEAKKHGKTIKYTITTNGV 190
>gi|240274443|gb|EER37959.1| molybdopterin cofactor biosynthetic protein [Ajellomyces capsulatus
H143]
Length = 386
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 4/132 (3%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + ++ N + I
Sbjct: 192 RELCLTTNGISLHRKLDNMVEAGLTGINLSLDTLDPFQFQLMTRRNGLEAVMKSIARVLE 251
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
++ V+++G+ND + L +++ + P ++ I + P+ G ++ +
Sbjct: 252 MNKQGAGIKLKINCVVMRGMNDR--EILRFVELGREKPLEVRFIEYMPFDGNKWNQAKML 309
Query: 333 DIVTFSECIKRS 344
I+
Sbjct: 310 PYKEMLTIIREK 321
>gi|300926542|ref|ZP_07142330.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
182-1]
gi|300417433|gb|EFK00744.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
182-1]
Length = 190
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY--- 326
Y N ++ YV++ G +D A L + + + KI L+P++ ++
Sbjct: 99 KYLANKN-VKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAM 157
Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348
++ + +++ G+
Sbjct: 158 GEEYKLDGVKPPKKETMERVKGILEQYGHKV 188
>gi|78356719|ref|YP_388168.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219124|gb|ABB38473.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 426
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 27/250 (10%), Positives = 69/250 (27%), Gaps = 20/250 (8%)
Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
R + + C+ C C + + R + + L + +
Sbjct: 170 CCPAARNLALGRYEAPLPTSRSCNARCVGCISQQEDGSRICSTPQNRLSFTPTPEEIAEV 229
Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
+ + + + GEPL + + +++ + G S
Sbjct: 230 -----MLHHGKAETEKPVFSFGQGCEGEPLTEANIIAQAVHLFRSKGGTGTVNVNTNAS- 283
Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
+ ++ E + +SL++ ++ N R Y + +
Sbjct: 284 --LPQAVIKLAEAGISSIRVSLNSAREEVYNRYYRP-RGYTFADVRSSIAE--AHKRGVF 338
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL-------CSDQKD 333
++ + GI+D + L +++ + L N P
Sbjct: 339 VSLNLLYFPGISDCELELQALDELIGTEKVDFVQLRNLNIDPEMYLELLDGIEFGPSAGF 398
Query: 334 IVTFSECIKR 343
I F +++
Sbjct: 399 IN-FRRRLRK 407
>gi|284038450|ref|YP_003388380.1| UspA domain protein [Spirosoma linguale DSM 74]
gi|283817743|gb|ADB39581.1| UspA domain protein [Spirosoma linguale DSM 74]
Length = 285
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 10/148 (6%)
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRN 252
+ ++ G + R IT G+ P I V EE L I +
Sbjct: 76 QKTLNHLAHTLNEQYGTEVNIRCIT--KEGYPIPAIREVAEEEKADLVIMSTTGTAPQSA 133
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRDALNL---IKILKG 308
L+ + + + R T ++ G++ D+P +A+ L ++ +
Sbjct: 134 QLMGSVATSMVAETNVPL---LLVPPSVRYTDVKNVVLGVDLDTPPNAVALDTALRFARQ 190
Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVT 336
+NL+ +P P ++ + + I
Sbjct: 191 FGCVVNLLCIHPHPAEAHIRTKAEHIRE 218
>gi|312898867|ref|ZP_07758255.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
gi|310620029|gb|EFQ03601.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
Length = 466
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 14/193 (7%)
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+LC++ C+L C +C+ N R L+ I+ ++ S
Sbjct: 99 SLCLNIAHDCNLRCKYCFASQGDYDTNK------------RELMSFDVAKRAIDLLIESS 146
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233
G++ V GEPL NF VK+++ L +++L+T+G + + ++
Sbjct: 147 AGKRQHCEVDFFGGEPLMNFGVVKQTIEYIRKQEKLHNKVFKLSLTTNGLLLDEEKITYL 206
Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
+ + L +SL + + + ++ +H N K
Sbjct: 207 TDNHISLILSLDGREDVHNRMRPDAGGHGSYKRIVKNLQHAVSGRNGEEYYVRGTYTKYN 266
Query: 293 NDSPRDALNLIKI 305
D D ++ +
Sbjct: 267 LDFTADVEHMADL 279
>gi|265767817|ref|ZP_06095349.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263252489|gb|EEZ24017.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 415
Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 12/199 (6%)
Query: 100 PVEIETVYIPEKSRGTLCVS-SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
ET+ E T+ C+L C +C G + E L A+ +L
Sbjct: 6 GEITETMVRREVENLTVLTFEVTERCNLRCRYCAFGDLYYGYDERKGENLD-FPKAKQIL 64
Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
G + + + + + G GEPL N D +K+ +S +
Sbjct: 65 DFLFGIWEKIPHLSVA---RTLTVGFYG-GEPLMNMDLIKQIVSYIDEHKPEGMKFAYNM 120
Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH----YP 274
+ + + E L +SL D + + +N K + + ++ YP
Sbjct: 121 TTNAMLLRVYQDFLVEHKFHLLVSLDGTEADDCHRVT-VNGKSSFAQVFEQIKNLQFCYP 179
Query: 275 GLSNARRITFEYVMLKGIN 293
++F V+ N
Sbjct: 180 EYFKKY-VSFNSVIHSESN 197
>gi|161614797|ref|YP_001588763.1| hypothetical protein SPAB_02549 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161364161|gb|ABX67929.1| hypothetical protein SPAB_02549 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 215
Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY--- 326
Y N ++ YV++ G +D A L + + + KI L+P++ ++
Sbjct: 124 QYLSKKN-VKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAM 182
Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348
++ + +++ G+
Sbjct: 183 GEEYKLDGVKPPKKETMERVKGILEQYGHKV 213
>gi|332685733|ref|YP_004455507.1| pyruvate formate-lyase activating enzyme [Melissococcus plutonius
ATCC 35311]
gi|332369742|dbj|BAK20698.1| pyruvate formate-lyase activating enzyme [Melissococcus plutonius
ATCC 35311]
Length = 258
Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 85/245 (34%), Gaps = 31/245 (12%)
Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKI 179
GC L C +C +N + E + L+G++ E+I +I +
Sbjct: 28 KGCPLNCQWCS---NPESQNGSQEPMWDTKKHQYELIGNYQSLEEIMEEIIKDQPFYEES 84
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIGVM 238
V + GE L + V + L + + T+G+ P I + +
Sbjct: 85 GGGVTLSGGEILYQSEFVIQLLKELQAKKIHTAGE------TTGYAKPKIFADFIKHVDL 138
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
L + + + ++ K L+ L A N + ++ N+S D
Sbjct: 139 LYFDVKHYDSKKHQQNIGVSNKQILKNLEIALE------NNTNLIIRIPVIPNFNNSIDD 192
Query: 299 ALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQ------------KDIVTFSECIKRSG 345
A N ++ K+ L+PF+ + +Y ++ +++ F E ++
Sbjct: 193 AKNFAELFHLFGIKKVELLPFHQFGEEKYSHLNRNYLFKNIPQLHTEELNYFKEILESHQ 252
Query: 346 YSSPI 350
+ +
Sbjct: 253 INCHV 257
>gi|320120549|gb|EFE28938.2| biotin synthase [Filifactor alocis ATCC 35896]
Length = 325
Score = 37.0 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 31/219 (14%), Positives = 56/219 (25%), Gaps = 24/219 (10%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
CS C +C + QV G ++
Sbjct: 63 KCSEDCKYCA----------QSSWYKTQV---EEYPLMEEKELIDLAKYNHDRGVVRYSV 109
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
V G + D V KS++ + + L + ++ + +
Sbjct: 110 VTSGRRLSKKDVDAVCKSITNLRKEVDIQVCASFGLLEK----EDFEKLKAVGVSRVHNN 165
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L + NI + + + A + + + M +N D L
Sbjct: 166 LETSRQNFINICTTHTYEDKIHAIRQAQEAGLKVCSGGIMGLGETMEDRVNMVI-DIREL 224
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
+K IP +N NP PG Y +
Sbjct: 225 G--IKSIP--VNF--LNPIPGTPYENVPMLSQEEMRRIV 257
>gi|197303668|ref|ZP_03168705.1| hypothetical protein RUMLAC_02395 [Ruminococcus lactaris ATCC
29176]
gi|197297188|gb|EDY31751.1| hypothetical protein RUMLAC_02395 [Ruminococcus lactaris ATCC
29176]
Length = 464
Score = 37.0 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 79/248 (31%), Gaps = 20/248 (8%)
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
++ L ++ + + + ++ + L I V + LC+
Sbjct: 56 LKEKLGDRYTEEDLKDILDAVTELTEQGRLFTKDIYE----NLIGIVKQRKTVVKALCLH 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
C+L C +C+ E R L + + ++ + G +
Sbjct: 112 IAHDCNLACQYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLVANSGSRR 157
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGV 237
+ V GEPL N+ VK+ ++ + R TL+T+G + +
Sbjct: 158 NLEVDFFGGEPLMNWKVVKELVAYGRELEKQYDKHFRFTLTTNGVLLNEEVQEFVNREMD 217
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+ +SL + N K ++++ + N ++ + D +
Sbjct: 218 NVVLSLDGRKEVNDRMRPFRNGKGSYDLIVPKFQKLAESRNQQKYYIRGTFTRNNLDFSK 277
Query: 298 DALNLIKI 305
D + +
Sbjct: 278 DVEHFADL 285
>gi|225869370|ref|YP_002745318.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
zooepidemicus]
gi|225702646|emb|CAX00721.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
equi subsp. zooepidemicus]
Length = 257
Score = 37.0 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---C 328
+ + I ++ NDS DA ++ + + L+PF+ + +Y
Sbjct: 167 HYAFEMGKEIVLRIPVIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGR 226
Query: 329 S---------DQKDIVTFSECIKRSGYSS 348
S +D+V + +
Sbjct: 227 SYEMADVLAYHPEDLVDYQQIFLNHHIHC 255
>gi|195978911|ref|YP_002124155.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975616|gb|ACG63142.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 289
Score = 37.0 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---C 328
+ + I ++ NDS DA ++ + + L+PF+ + +Y
Sbjct: 199 HYAFEMGKEIVLRIPVIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGR 258
Query: 329 S---------DQKDIVTFSECIKRSGYSS 348
S +D+V + +
Sbjct: 259 SYEMADVLAYHPEDLVDYQQIFLNHHIHC 287
>gi|291526674|emb|CBK92260.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale
M104/1]
gi|291536765|emb|CBL09877.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Roseburia
intestinalis M50/1]
Length = 469
Score = 37.0 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 43/313 (13%), Positives = 89/313 (28%), Gaps = 36/313 (11%)
Query: 50 FQGMSDISQEVRHLL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETV 106
F +++ ++ L + + + I R +L + P++
Sbjct: 16 FDANTNVIINLKEDLYFELEKYMQSGYKEFTPAIEKLRDRGYLKDRADFEMVHPMDSTLE 75
Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
Y E+ GT+ + GC+L C +C + +V ++ + +
Sbjct: 76 YSLERCIGTIALQVTQGCNLRCKYCA----------YSGSYDNRVHSSKRMSKEIAFKAI 125
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
++S G EPL D +K+ + A IT +T+
Sbjct: 126 DFLFDHSIDRDRVSLGFYGG--EPLLELDLIKECVKYAKKKSIGKELMFNITSNTTLITD 183
Query: 227 NIARVGEEIGVMLAISLHAVSN-DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
+ + + L +SL +N + N +++
Sbjct: 184 EVLKFLYDNEFSLTVSLDGDRQAHDKNRVFAANGAGTFSVVMQILEKIQTQYPDYMERVH 243
Query: 286 YVMLKGINDSPRDALNL---IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT------ 336
+ N K +K + NLI EY D+
Sbjct: 244 INAVIDPTTDFDCTSNFFSDYKTVKDFYIQANLI-------SEYYRKDEVATDEEYREKF 296
Query: 337 ----FSECIKRSG 345
F +++ G
Sbjct: 297 SYEIFKMYLQKLG 309
>gi|212696379|ref|ZP_03304507.1| hypothetical protein ANHYDRO_00916 [Anaerococcus hydrogenalis DSM
7454]
gi|325848830|ref|ZP_08170340.1| glycyl-radical enzyme activating protein family protein
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|212676657|gb|EEB36264.1| hypothetical protein ANHYDRO_00916 [Anaerococcus hydrogenalis DSM
7454]
gi|325480474|gb|EGC83536.1| glycyl-radical enzyme activating protein family protein
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 320
Score = 37.0 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 51/159 (32%), Gaps = 27/159 (16%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+ T G++P + + V + + + +++ + + R+
Sbjct: 167 NTAIETCGYMPRKSLDLIKDHVDIFLFDIKQMDPVKHKYWTGVNNERI---LSNLRYLLE 223
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEYLC-- 328
R+ +LKG+NDS + + ++ L+ N L+P++ + +Y
Sbjct: 224 SGKKVRVR--MPILKGVNDSHEEIMAVVDFLEDFKCFKNFDGIDLLPYHRYGVGKYEQLD 281
Query: 329 ---S-----------DQKDIVTFSECIKRSGYSSP-IRT 352
+ + + I + +R
Sbjct: 282 MDYPMDSEMEGEFALSNEQLDAIQKWIDENKIEVNLVRH 320
>gi|312868229|ref|ZP_07728429.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
parasanguinis F0405]
gi|311095974|gb|EFQ54218.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
parasanguinis F0405]
Length = 264
Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 39/259 (15%), Positives = 80/259 (30%), Gaps = 59/259 (22%)
Query: 116 LCVSSQVGCSLTCSFCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
V Q GC + C +C+ T R T +++L + L R G+ G
Sbjct: 31 FIVFLQ-GCQMRCQYCHNPDTWAMETNK---SRERTVDDVLEEALRYRGFWGEKGGITVS 86
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
G + + I + E + +L + L R + ++ +
Sbjct: 87 GGEALLQIDFLI--ALFTKAQELGIHCTLDTCALPFRNTPRYLEKFDRLMAVTDLVLLDI 144
Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
ND R+ +V I AC Y + + +V
Sbjct: 145 KE-----------------INDERHKIVTS----HTNKTILACAKYLS-DIGKPVWIRHV 182
Query: 288 MLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKD 333
++ G+ D D + L K +K + K ++P++ ++ ++
Sbjct: 183 LVPGLTDRDDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYKLEGVKPPTKER 242
Query: 334 IVT---------FSECIKR 343
+ + + +KR
Sbjct: 243 VQNAKDLMETESYQDYLKR 261
>gi|146297457|ref|YP_001181228.1| radical SAM domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145411033|gb|ABP68037.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 267
Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 31/240 (12%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+ C++ C++C + N L + P S
Sbjct: 24 LPVAKACNIKCNYCDRNISCMNEN-HPGACLEVL---------TPEQALERYRRYASSDS 73
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEI 235
++ + + G G+PL N + K I S +ST+G + I + +
Sbjct: 74 RLKIVGISGPGDPLFNPETFKTFELIKSHDKDAI-----FCISTNGLLLEDRIEDLLKSN 128
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP----------GLSNARRITFE 285
+ ++++AVS + + + + +
Sbjct: 129 VRFVTVTVNAVSFKVAKEIYEFALYDEVLYFGEDAAKLLVEKQQKGIEKACKAGLVVKVN 188
Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPW-PGCEYLCSDQKDIVTFSECIKR 343
V++ IN + K++K + I N++P P+ + + +
Sbjct: 189 TVLIPDIN--QDHIEEIAKVVKALGVSIMNIMPLRPYAKFSHLKRPSCDTVNNIRKRCES 246
>gi|123500446|ref|XP_001327862.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121910797|gb|EAY15639.1| hypothetical protein TVAG_209180 [Trichomonas vaginalis G3]
Length = 471
Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 64/228 (28%), Gaps = 20/228 (8%)
Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD- 195
TA+E + +L + + R N +P ++
Sbjct: 130 TFDDYPTAQEFIESH-PISVVLFEKKAGGPLFEKFNEIAERNRDNYAFGCSPDPDVTYEL 188
Query: 196 ---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
V + + F +T G V NI E+ + + +
Sbjct: 189 RIRYVPSIVLYRNTDKSKVFYPYNLTE---GTVENITEWIEQNKNPNYEIFNINNQQIYE 245
Query: 253 ILVPINRKYPLEMLID---ACRHYPGLSNARRITFEYVMLKGIN-DSPRDALNLIKILKG 308
+ + D A R ++ + + ++ +N + ++ +
Sbjct: 246 QTKELGLFFTPVEQEDLDKALRTISMVTTQYKNKLRFAVIDAVNGNRFMQSIGFSRYADP 305
Query: 309 IPAKIN-----LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
+N +I + G E+ K I+ F + + + IR
Sbjct: 306 AFCVLNYTGKRVIKYLYTEGSEFRP---KQILHFIDEVFAGNINQTIR 350
>gi|228990331|ref|ZP_04150297.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442]
gi|228769407|gb|EEM18004.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442]
Length = 468
Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 18/270 (6%)
Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
+ E I+ K + I + + LC++ C+L+C +C+
Sbjct: 62 IRETIADIEELKNDGELFTEDEYKSLSI-DLRNRQTYVKALCLNVAHTCNLSCEYCFASQ 120
Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
K + R+++ G I+ ++ S + +I G GEPL +
Sbjct: 121 GKYNGS-------------RAIMSYEVGKRAIDYLLENSGHHRNLDIDFFG-GEPLMAWK 166
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNI 253
VK+ ++ A R T +T+G + I + + +SL ++
Sbjct: 167 VVKQIVAYARSKEKEYKKTFRFTFTTNGMLLNDEITDFLNKEMYNVVLSLDGRKEVHDHL 226
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
+ K E ++ + + + D D ++ + +
Sbjct: 227 RKTVTGKGSYEYIVPKFQEFVKSRGDKEYYVRGTYTHNNVDFTNDIFHIADLGFDKLSME 286
Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
+I NP D DI E + +
Sbjct: 287 PVI-CNPREPYALTEKDLPDIYNQYEILAK 315
>gi|225387254|ref|ZP_03757018.1| hypothetical protein CLOSTASPAR_01006 [Clostridium asparagiforme
DSM 15981]
gi|225046646|gb|EEG56892.1| hypothetical protein CLOSTASPAR_01006 [Clostridium asparagiforme
DSM 15981]
Length = 466
Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 71/232 (30%), Gaps = 28/232 (12%)
Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL-- 116
EVR L + + ++ + V + K R T+
Sbjct: 55 EVRSRLAGRYPLD--DVEEALEDIQELIDLEQLLTRDIYKDFV------MDFKRRKTVVK 106
Query: 117 --CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
C+ C+L C +C+ E R L + + +I +
Sbjct: 107 ALCLHIAHDCNLACKYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIAN 152
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
G + V GEPL N+D VK+ + K R TL+T+G + +
Sbjct: 153 SGSREHLEVDFFGGEPLMNWDVVKRLVEYGRSKEAEFHKKFRFTLTTNGVLLNDEVMEFC 212
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
+ +SL + N K E+++ + + L +
Sbjct: 213 NREMSNVVLSLDGRPEVNDKMRPFRNGKGSYELIVPKFQKFAELRDQNNYYV 264
>gi|255542249|ref|XP_002512188.1| molybdopterin cofactor synthesis protein A, putative [Ricinus
communis]
gi|223548732|gb|EEF50222.1| molybdopterin cofactor synthesis protein A, putative [Ricinus
communis]
Length = 390
Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 215 RRITLSTSGF--VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
+ + ++T+G + ++ + + ISL + + + I+A
Sbjct: 154 KMLAMTTNGITLSRKLPKLKDCGLNSINISLDTLVPAKFEFMTRRKGHERVMESINAAVD 213
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ V+++G ND + + +++ + P I I F P+ G +
Sbjct: 214 ----CGYNPVKVNCVVMRGFND--DEICDFVELTRNRPINIRFIEFMPFDGNVW 261
>gi|255067413|ref|ZP_05319268.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sicca ATCC
29256]
gi|255048383|gb|EET43847.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sicca ATCC
29256]
Length = 270
Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 31/244 (12%), Positives = 69/244 (28%), Gaps = 50/244 (20%)
Query: 123 GCSLTCSFCY-------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
GC + C +C+ Q +T E++ QV+ R L G G
Sbjct: 51 GCLMRCLYCHNRDTWDLHTEQAQE--MTVPEVMKQVMSYRHYLRATGGGVTATGGEPLLQ 108
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
+ + + DS G + I +
Sbjct: 109 YEFVRDWFTACQEHD----------IHTCLDSNGYALHYDSILDD-----------LLDH 147
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L + ++ +LV + + + YV++ G D
Sbjct: 148 TNLVMLDLKQIDPEIHKVLV------GIPNTKTLKFAHYLAERKQPARVRYVVVPGYTDD 201
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
R A L + + + + L+P++ ++ ++ I+ +
Sbjct: 202 DRSAHLLGEFIADMDNVEMVELLPYHELGAHKWALCGDTYKLTGVHPPPKETILKIKSIL 261
Query: 342 KRSG 345
+ G
Sbjct: 262 ESYG 265
>gi|160915923|ref|ZP_02078131.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991]
gi|158432399|gb|EDP10688.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991]
Length = 249
Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 52/242 (21%)
Query: 122 VGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
GC + C +C+ Q N+T++E+L + L RS G
Sbjct: 28 NGCQMRCKYCHNVDTWQMQEANMTSDELLKKALRYRSYWKQGGG---------------- 71
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
I + G GEPL D V + A G+ L TSG P ++ +
Sbjct: 72 --ITVSG-GEPLLQIDFVLELFEKAKA-KGV-----HTVLDTSGNPFTIEQPFFDKLQKL 122
Query: 235 IGVMLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ V I L + L + + + + +V++ GIN
Sbjct: 123 LAVTDLILLDIKHIDALAHKELTGQDNANILAFARYLSEIQK-----PVWIRHVLVPGIN 177
Query: 294 DSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
D L +K + ++ ++P++ ++ ++ + E
Sbjct: 178 DDEAQLKRLSVFIKELSNVERVEVLPYHSLGEFKWEKLGIPYTLKGIQAPSKESVEKAKE 237
Query: 340 CI 341
+
Sbjct: 238 IL 239
>gi|228996442|ref|ZP_04156083.1| Radical SAM domain protein [Bacillus mycoides Rock3-17]
gi|228763325|gb|EEM12231.1| Radical SAM domain protein [Bacillus mycoides Rock3-17]
Length = 468
Score = 37.0 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 17/238 (7%)
Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
+ E I+ K + I + + LC++ C+L+C +C+
Sbjct: 62 IRETIADIEELKNDGELFTEDEYKSLSI-DLRNRQTYVKALCLNVAHTCNLSCEYCFASQ 120
Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
K + R+++ G I+ ++ S + +I G GEPL +
Sbjct: 121 GKYNGS-------------RAIMSYEVGKRAIDYLLENSGHHRNLDIDFFG-GEPLMAWK 166
Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNI 253
VK+ ++ A R T +T+G + I + + +SL ++
Sbjct: 167 VVKQIVTYARSKEKEYKKTFRFTFTTNGMLLNDEITDFLNKEMYNVVLSLDGRKEVHDHL 226
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
+ K + ++ + + + D D ++ + +
Sbjct: 227 RKTVTGKGSYDYIVPKFQEFVKSRGDKEYYVRGTYTHNNVDFTNDIFHIADLGFDKLS 284
>gi|261409709|ref|YP_003245950.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp.
Y412MC10]
gi|261286172|gb|ACX68143.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp.
Y412MC10]
Length = 334
Score = 37.0 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+L C +C + + + + E+I ++
Sbjct: 18 ISVTDRCNLRCVYC---------------MPEEGMEFQPH-DQIMSYEEIASIMRVLAPM 61
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIG 236
+S + + G GEPL V+K L + + I+L+T+G + P+ AR+ +E G
Sbjct: 62 GVSKVRLTG-GEPL-----VRKDLETLVHQIASIEGVQDISLTTNGIMLPSKARLLKEAG 115
Query: 237 VMLA-ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+ ISL ++ + + R + + I+A + I V++KG N
Sbjct: 116 LTRINISLDSLQEERYARITRGGRVHKVLEGIEAAYE----AGLNPIKLNMVLMKGFN-- 169
Query: 296 PRDALNLIKILKGIPAKINLIPFNPW 321
+ + I + P + I + P
Sbjct: 170 EDEIRDFIALTLDRPLHVRFIEYMPI 195
>gi|332523733|ref|ZP_08399985.1| glycyl-radical enzyme activating protein [Streptococcus porcinus
str. Jelinkova 176]
gi|332314997|gb|EGJ27982.1| glycyl-radical enzyme activating protein [Streptococcus porcinus
str. Jelinkova 176]
Length = 257
Score = 37.0 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 29/218 (13%), Positives = 69/218 (31%), Gaps = 35/218 (16%)
Query: 122 VGCSLTCSFCY---TGT----QKLVRNLTAEEILLQV----LLARSLLGDFPGCEDIEGM 170
GC L C +C + Q L + E + ++ ++ +L D E+ G
Sbjct: 28 KGCPLRCPWCANPESQKKQPEQMLKADGQTYETVGELKTVDMVIEDVLKDLDFYEESGGG 87
Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
+ S G + ++ ++ T+ + +
Sbjct: 88 LTLSGGEIFAQYDFAKAILKAAKEKSLHTAIE------------------TTAYAKHEQF 129
Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
+ V + N +R+ + + I + + + I ++
Sbjct: 130 IDLIQYVDFIYTDLKHYNQVRHRKMTGVTNDLIIKNI-----HYAFAMGKEIVLRIPVIP 184
Query: 291 GINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYL 327
NDS DA ++ + +++ L+PF+ + +Y
Sbjct: 185 NFNDSLEDAKAFSELFNQLEISEVQLLPFHQFGENKYK 222
>gi|329929025|ref|ZP_08282827.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. HGF5]
gi|328937014|gb|EGG33443.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. HGF5]
Length = 334
Score = 37.0 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+L C +C + + + + E+I ++
Sbjct: 18 ISVTDRCNLRCVYC---------------MPEEGMEFQPH-DQIMSYEEIAAIMRVLAPM 61
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIG 236
+S + + G GEPL V+K L + + I+L+T+G + P+ AR+ +E G
Sbjct: 62 GVSKVRLTG-GEPL-----VRKDLETLVHKIASIEGVQDISLTTNGIMLPSKARLLKEAG 115
Query: 237 VMLA-ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+ ISL ++ + + R + + I+A + I V++KG N
Sbjct: 116 LTRINISLDSLQEERYARITRGGRVHKVLEGIEAAYE----AGLNPIKLNMVLMKGFN-- 169
Query: 296 PRDALNLIKILKGIPAKINLIPFNPW 321
+ + I + P + I + P
Sbjct: 170 EDEIRDFIALTLDRPLHVRFIEYMPI 195
>gi|223040342|ref|ZP_03610618.1| radical SAM domain protein [Campylobacter rectus RM3267]
gi|222878411|gb|EEF13516.1| radical SAM domain protein [Campylobacter rectus RM3267]
Length = 301
Score = 37.0 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 71/197 (36%), Gaps = 19/197 (9%)
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
+Q C+ C +C K V + + QV+ E + +
Sbjct: 24 AQKCCNFDCVYCELTAAKPVVAIENPPSVEQVIA--------------EVKAALAAHPHV 69
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
I + GEP D V+ + + +K I + SG + + ++
Sbjct: 70 DVITLTANGEPTLYPDLVRLAHELNLIK---GRAKTLILSNGSGVLDPQICEALKGLDIV 126
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
SL + + + K ++ L+ A + + E +++KG+ND+ +
Sbjct: 127 KFSLDSAAQKTFARIDRSGEKIDIDELVGAMAKFRREFKGE-LVLEILVVKGLNDTKAEF 185
Query: 300 LNL-IKILKGIPAKINL 315
L + + +PA++++
Sbjct: 186 EALNAALNQILPARVDI 202
>gi|116749884|ref|YP_846571.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698948|gb|ABK18136.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 470
Score = 37.0 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 73/259 (28%), Gaps = 33/259 (12%)
Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQ-VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
R E ++ + + + C+ CS+CY ++L RN +V
Sbjct: 64 RARADSFREEMGHLRFGLKPSAVYFNPTDRCNFNCSYCYL-PEELRRNGKTMTP-EEVCS 121
Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
A L + G ++ G EPL + + + D
Sbjct: 122 ALERLKSWFCGIMPAGARPQ--------LIFHGS-EPLMAKEAIFAGMERFRDDFTFGIQ 172
Query: 214 KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS----NDLRNILVPINRKYPLEMLIDA 269
+ L ++ GV + +SL A + N R + +I+
Sbjct: 173 SNGMLLD-----DEAIAFLKDHGVGIGVSLDAPTADVANLTRRNWSGTGGFERVSEVIEK 227
Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEY 326
YP + V ++ P ++ N + G +
Sbjct: 228 LASYPAFN-----VITTVTRGNVHTLP----AMVDFYHQRGIATVMFNPVRCTQQGGRDL 278
Query: 327 LCSDQKDIVTFSECIKRSG 345
SD+ F + R+
Sbjct: 279 KPSDRVLAERFCRALDRAH 297
>gi|327311467|ref|YP_004338364.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus
uzoniensis 768-20]
gi|326947946|gb|AEA13052.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus
uzoniensis 768-20]
Length = 341
Score = 37.0 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 31/206 (15%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG-DFPGCEDIEGMVIPSVG 176
V+ C+ +C FC Q+ LL D G +
Sbjct: 42 VAVNDVCNFSCIFC--------------HFEGQLRGVGRLLNADDYGFLVDVLSKVGVRD 87
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
K++ GEPL D V + + G+ I+++T+GF
Sbjct: 88 YKLTG------GEPLLRSDIVD--IVRKMNRDGVE-----ISMTTNGFRLAELAEDLAAA 134
Query: 237 VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+ +++ ++ + V K ++D + ++ V+LKGIND
Sbjct: 135 GLRRVNVSVHTTDPEKFSKVAGVPKEWFRRVLDGVHA--AVKAGMKVKLNAVLLKGINDD 192
Query: 296 PRDALNLIKILKGIPAKINLIPFNPW 321
+L+K+ I A I LI P
Sbjct: 193 RESLRSLVKLAASIGASIQLIELMPV 218
>gi|222527298|ref|YP_002571769.1| Radical SAM domain-containing protein [Chloroflexus sp. Y-400-fl]
gi|222451177|gb|ACM55443.1| Radical SAM domain protein [Chloroflexus sp. Y-400-fl]
Length = 578
Score = 37.0 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 9/134 (6%)
Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
I++ +R L + + E+ + + + ++ V P
Sbjct: 238 IAKALRETLGVGYRDEHGEVRINPDRPFIEDLDTLPIPLHDQLPWQRYKVPIVGGPYTFV 297
Query: 114 GTLCVSSQVGCSLTCSFC--YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
T GC C +C + Q VR+ + +L ++++ + + E V
Sbjct: 298 LT-----SRGCPAGCRYCIKHVTYQSSVRHRSPHHVLQEMVMLKEMGMHHIHFEADLFTV 352
Query: 172 IPSVGRKISNIVMM 185
+ + ++
Sbjct: 353 KKEFVYDLCHTIIK 366
>gi|320642894|gb|EFX12095.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H- str. 493-89]
gi|320648351|gb|EFX17006.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H- str. H 2687]
gi|332758983|gb|EGJ89293.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
4343-70]
gi|332767883|gb|EGJ98072.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
2930-71]
Length = 215
Score = 37.0 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY--- 326
Y N ++ YV++ G +D A L + + + KI L+P++ ++
Sbjct: 124 KYLANKN-VKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAM 182
Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348
++ + +++ G+
Sbjct: 183 GEEYKLDGVKPPKKETMERVKGILEQYGHKV 213
>gi|327393327|dbj|BAK10749.1| pyruvate formate-lyase 1- activating enzyme PflA [Pantoea ananatis
AJ13355]
Length = 290
Score = 37.0 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 38/240 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C +C + A + + L +L G V S G I
Sbjct: 73 GCLMRCLYC-HNRDTW--DTHAGKEITVEALMADVLSYRHFMNASGGGVTASGGEAILQA 129
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ + + + D+ G + + ++ +
Sbjct: 130 EF--VRDWFRACKA--EGIHTCLDTNGFVRRY-----------DPVIDELLDATDLVMLD 174
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L +++++ ILV ++ L+ Y R +V++ G +D L
Sbjct: 175 LKQMNDEVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDDTVHRL 228
Query: 303 IKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
+ + KI L+P++ ++ ++ + + R G+
Sbjct: 229 GAFTQDMANVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKETMERVKNILLRYGHEV 288
>gi|240144502|ref|ZP_04743103.1| radical SAM domain protein [Roseburia intestinalis L1-82]
gi|257203489|gb|EEV01774.1| radical SAM domain protein [Roseburia intestinalis L1-82]
Length = 457
Score = 37.0 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 18/192 (9%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L F + +I + G
Sbjct: 101 CLHIAHDCNLACQYCFA---------EEGEY-----HGRRALMSFEVGKKALDFLIANSG 146
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ + V GEPL N+ VK ++ + L R TL+T+G + I +
Sbjct: 147 NRRNLEVDFFGGEPLMNWQVVKDLVAYGREQEKLHDKNFRFTLTTNGVLLNDEIMEFCNK 206
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +S+ + ++++ + + + + N
Sbjct: 207 EMANVVLSIDGRKEVHDKMRPFRKGAGSYDLIVPKFQKFAESRHQDKYYVR-GTFTHYNP 265
Query: 294 DSPRDALNLIKI 305
D D L+L +
Sbjct: 266 DFAADVLHLADL 277
>gi|163849304|ref|YP_001637348.1| radical SAM domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|163670593|gb|ABY36959.1| Radical SAM domain protein [Chloroflexus aurantiacus J-10-fl]
Length = 583
Score = 37.0 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 9/134 (6%)
Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
I++ +R L + + E+ + + + ++ V P
Sbjct: 243 IAKALRETLGVGYRDEHGEVRINPDRPFIEDLDTLPIPLHDQLPWQRYKVPIVGGPYTFV 302
Query: 114 GTLCVSSQVGCSLTCSFC--YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
T GC C +C + Q VR+ + +L ++++ + + E V
Sbjct: 303 LT-----SRGCPAGCRYCIKHVTYQSSVRHRSPHHVLQEMVMLKEMGMHHIHFEADLFTV 357
Query: 172 IPSVGRKISNIVMM 185
+ + ++
Sbjct: 358 KKEFVYDLCHTIIK 371
>gi|317502037|ref|ZP_07960219.1| radical SAM domain-containing protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|331090447|ref|ZP_08339328.1| hypothetical protein HMPREF1025_02911 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316896511|gb|EFV18600.1| radical SAM domain-containing protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|330401194|gb|EGG80787.1| hypothetical protein HMPREF1025_02911 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 467
Score = 37.0 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 81/250 (32%), Gaps = 25/250 (10%)
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTL----C 117
+ F + ++ + + R L G + VY K R T+ C
Sbjct: 51 ETFEFLRSKLGS-TYAEEDIRDILEAVATITQEGRLFTRDVYEDYIDEVKQRKTVVKALC 109
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+ C+L C +C+ E R L + + +I + G+
Sbjct: 110 LHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANSGK 155
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEI 235
+ + V GEPL N+ VK ++ + + R T++T+G + I +
Sbjct: 156 RRNLEVDFFGGEPLMNWQVVKDLVAYGREQEKIHDKHFRFTVTTNGVLLNDEIQEFVNKE 215
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
+ +SL + N K ++++ + N + + D
Sbjct: 216 MDNVVLSLDGRKEVNDKMRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTRNNLDF 275
Query: 296 PRDALNLIKI 305
D L+ +
Sbjct: 276 SNDVLHFADL 285
>gi|108862722|gb|ABA98688.2| Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
[Oryza sativa Japonica Group]
Length = 293
Score = 37.0 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
+ + ++T+G V + R+ E L ISL + + + IDA
Sbjct: 163 KTLAMTTNGLVLSKKLPRLKECGLNALNISLDTLVPAKFEFMTRRKGHSRVMESIDAAIE 222
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
S + V+++G+ND + + +++ + P + I F P+ G +
Sbjct: 223 LGFQS----VKVNCVVMRGMND--DEICDFVEMTRDKPVNVRFIEFMPFDGNVW 270
>gi|333008877|gb|EGK28337.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
K-272]
gi|333020187|gb|EGK39457.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
K-227]
Length = 246
Score = 37.0 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 123 GCSLTCSFCYTGTQKLVRN----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
GC + C +C + +T E+++ +V+ R + G G
Sbjct: 29 GCLMRCLYC-HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEF 87
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEI 235
+ + ++ G+ L T+GFV + E+
Sbjct: 88 VRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLEV 123
Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
++ + L +++++ LV ++ LE Y N ++ YV++ G +D
Sbjct: 124 TDLVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWSRYVVVPGWSDD 177
Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
A L + + + KI L+P++ ++ ++ + +
Sbjct: 178 DDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 237
Query: 342 KRSGYSS 348
++ G+
Sbjct: 238 EQYGHKV 244
>gi|291616899|ref|YP_003519641.1| PflA [Pantoea ananatis LMG 20103]
gi|291151929|gb|ADD76513.1| PflA [Pantoea ananatis LMG 20103]
Length = 290
Score = 37.0 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 38/240 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
GC + C +C + A + + L +L G V S G I
Sbjct: 73 GCLMRCLYC-HNRDTW--DTHAGKEITVEALMADVLSYRHFMNASGGGVTASGGEAILQA 129
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
+ + + + D+ G + + ++ +
Sbjct: 130 EF--VRDWFRACKA--EGIHTCLDTNGFVRRY-----------DPVIDELLDATDLVMLD 174
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L +++++ ILV ++ L+ Y R +V++ G +D L
Sbjct: 175 LKQMNDEVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDDTVHRL 228
Query: 303 IKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
+ + KI L+P++ ++ ++ + + R G+
Sbjct: 229 GAFTQDMANVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKETMERVKNILLRYGHEV 288
>gi|77408113|ref|ZP_00784860.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
COH1]
gi|77173297|gb|EAO76419.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
COH1]
Length = 258
Score = 37.0 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 28/212 (13%), Positives = 66/212 (31%), Gaps = 23/212 (10%)
Query: 122 VGCSLTCSFCY---TGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
GC L C +C + + +R+ E + ++ + D + G
Sbjct: 29 KGCPLRCPWCANPESQKMVPETMRDAITNESV--IVGEEKSVDDIIEEVLKDIDFYEESG 86
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
I+ G + K++ + S+G+ + + + + +
Sbjct: 87 GGIT-----LSGGEIFAQFEFAKAILKRAKSLGIHTAIETTAYTR---HEQFIDLIQYVD 138
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ H S + + N + +N + I ++ NDS
Sbjct: 139 FIYTDLKHYNSLKHQEKTMVKNASI-------IKNIHYAFANGKTIVLRIPVIPNFNDSL 191
Query: 297 RDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
DA + + + + L+PF+ + +Y
Sbjct: 192 EDAEEFACLFDRLDIRQVQLLPFHQFGQNKYR 223
>gi|225871377|ref|YP_002747324.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
equi 4047]
gi|225700781|emb|CAW95452.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
equi subsp. equi 4047]
Length = 257
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---C 328
+ + + ++ NDS DA ++ + + L+PF+ + +Y
Sbjct: 167 HYAFEMGKEVVLRIPVIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGR 226
Query: 329 S---------DQKDIVTFSECIKRSGYSS 348
S +D+V + +
Sbjct: 227 SYDMADAVAYHPEDLVDYQQIFLNHHIHC 255
>gi|70996498|ref|XP_753004.1| molybdopterin cofactor biosynthetic protein [Aspergillus fumigatus
Af293]
gi|66850639|gb|EAL90966.1| molybdopterin cofactor biosynthetic protein [Aspergillus fumigatus
Af293]
gi|159131738|gb|EDP56851.1| molybdopterin cofactor biosynthetic protein [Aspergillus fumigatus
A1163]
Length = 440
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 7/129 (5%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + I+ + I+
Sbjct: 166 RELCLTTNGISLHRKLEDMVEAGLTGVNLSLDTLDPFQFQIMTRRKGFEAVMKSIERILE 225
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
+ V+++GIND + L +++ + P ++ I + P+ G ++ Q
Sbjct: 226 LNRAGAGITLKINCVVMRGINDR--EILPFVELGRDSPIEVRFIEYMPFDGNKW---SQG 280
Query: 333 DIVTFSECI 341
+V++ E +
Sbjct: 281 KMVSYQEML 289
>gi|22536508|ref|NP_687359.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
2603V/R]
gi|76787302|ref|YP_329047.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
A909]
gi|76797822|ref|ZP_00780087.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
18RS21]
gi|77404959|ref|ZP_00782060.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
H36B]
gi|77410625|ref|ZP_00786985.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
CJB111]
gi|77413311|ref|ZP_00789506.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
515]
gi|22533340|gb|AAM99231.1|AE014206_11 pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
2603V/R]
gi|76562359|gb|ABA44943.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
agalactiae A909]
gi|76586836|gb|EAO63329.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
18RS21]
gi|77160625|gb|EAO71741.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
515]
gi|77163340|gb|EAO74291.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
CJB111]
gi|77176398|gb|EAO79166.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
H36B]
Length = 258
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 28/212 (13%), Positives = 66/212 (31%), Gaps = 23/212 (10%)
Query: 122 VGCSLTCSFCY---TGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
GC L C +C + + +R+ E + ++ + D + G
Sbjct: 29 KGCPLRCPWCANPESQKMVPETMRDAITNESV--IVGEEKSVDDIIEEVLKDIDFYEESG 86
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
I+ G + K++ + S+G+ + + + + +
Sbjct: 87 GGIT-----LSGGEIFAQFEFAKAILKRAKSLGIHTAIETTAYTR---HEQFIDLIQYVD 138
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ H S + + N + +N + I ++ NDS
Sbjct: 139 FIYTDLKHYNSLKHQEKTMVKNASI-------IKNIHYAFANGKTIVLRIPVIPNFNDSL 191
Query: 297 RDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
DA + + + + L+PF+ + +Y
Sbjct: 192 EDAEEFACLFDRLDIRQVQLLPFHQFGQNKYQ 223
>gi|260891959|ref|YP_003238056.1| Radical SAM domain protein [Ammonifex degensii KC4]
gi|260864100|gb|ACX51206.1| Radical SAM domain protein [Ammonifex degensii KC4]
Length = 452
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 72/215 (33%), Gaps = 18/215 (8%)
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
+LC+ C+L C++C+ G A ++ + ++ ++ +
Sbjct: 83 SLCLMVAQACNLRCNYCFAGEGD--------------YGAAGIMSEEVARSAVDFLLESA 128
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
R+ I G GEPL NF V ++ + + TL+T+ + R
Sbjct: 129 GPRRTVEIDFFG-GEPLLNFPVVVATVRYGKERARKLGKEISFTLTTNAVLLDEEKERFL 187
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKG 291
E V L +SL + ++D R Y + R ++ Y+
Sbjct: 188 LEEEVNLVLSLDGRPEVHDRFRRFPDGTGSYRQVLDNIRRCYHNWAFRPRSSYCYLRGTF 247
Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
+ + + + I+L P P Y
Sbjct: 248 TRMNLDFSRDFKHLADQGFRHISLEPVVAPPSAPY 282
>gi|124485163|ref|YP_001029779.1| hypothetical protein Mlab_0336 [Methanocorpusculum labreanum Z]
gi|124362704|gb|ABN06512.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
Length = 319
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 47/251 (18%)
Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
CS C +C T R EE++ Q+ L + P
Sbjct: 29 CSYDCVYCECGATTHITTKRAEFFPTEEVISQLDAV---LRERPT--------------- 70
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGV 237
+ I G GEP + ++ K + ++ + ++ + T+G + N + +
Sbjct: 71 LDYITFAGSGEPTLSL-SIGKIIRHLK----TTYPQYKVAVLTNGSLLGNKEVIADLSSA 125
Query: 238 MLAI-SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
L I +L + S + + + ++ +I + + I E ++ +N S
Sbjct: 126 DLVIPTLTSTSQETFEKIHRPDTCLLIKTIISDILEFRKEFHGE-IWLEIFLIPDLNTSL 184
Query: 297 RDALNLIKIL-KGIPAKINLIPFN----PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
+ +L ++ K PA+ I N P D ++ F +
Sbjct: 185 EELASLRDVIDKIQPAR---IQLNTLDRPAAEDWVTAPDPDELENFRKYFAELKIPV--- 238
Query: 352 TPRGLDILAAC 362
D+ C
Sbjct: 239 -----DVAGVC 244
>gi|325693826|gb|EGD35745.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK150]
Length = 267
Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY----- 326
+ ++ + I ++ NDS DA + + + L+PF+ + +Y
Sbjct: 177 HYAFTHQKTIVLRIPVIPDFNDSLEDAEQFATLFNELSINQVQLLPFHQFGENKYKLLGR 236
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+D+ + + + +
Sbjct: 237 KYAMEDVKALHPEDLFEYQDVFLKHDINC 265
>gi|300870420|ref|YP_003785291.1| biotin synthase [Brachyspira pilosicoli 95/1000]
gi|300688119|gb|ADK30790.1| biotin synthase [Brachyspira pilosicoli 95/1000]
Length = 333
Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 38/297 (12%), Positives = 82/297 (27%), Gaps = 45/297 (15%)
Query: 54 SDISQE-----VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI 108
+D+ +E +R+ + + + I E + + C +
Sbjct: 4 TDLKKEISLEELRNKIIKGYDITKEEAMQLVEA---------PLEDLCSAADSIRKYFCS 54
Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
++ + CS C FC + N +IL +
Sbjct: 55 NIFDMCSIINAKSGKCSENCKFCA-QSSHYDTNCEEYDILD------------KEKILEQ 101
Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSKRRITLSTSGFVPN 227
G + G +IV G D V ++ + ++ G ++ G +
Sbjct: 102 GKSDFNKGVLRYSIVTSGRALYGKEIDEVYDAIETLNKETEGYVC-------ASLGLLDE 154
Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
+ + + H RN + + + I+A +
Sbjct: 155 EGFSKMKKAGLRRV--HNNLEASRNFFNKVCTTHTYDDKINAIKRAQKAGMVVCSGGIMG 212
Query: 288 MLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEY---LCSDQKDIVTFSEC 340
M + D A+ L ++ IP +N+ NP + + D+
Sbjct: 213 MGETWEDRIDMAIELRELGIMSIP--VNM--LNPIASTPFENIKPLTEDDMRRIVAI 265
>gi|159482096|ref|XP_001699109.1| hypothetical molybdopterin biosynthesis protein, MoaA family
[Chlamydomonas reinhardtii]
gi|158273172|gb|EDO98964.1| hypothetical molybdopterin biosynthesis protein, MoaA family
[Chlamydomonas reinhardtii]
Length = 277
Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
D +G + RR LS+ N + ++ + L AV+ + + R
Sbjct: 23 RDILDLVGQLGALRRQGLSSLAITSNGIVLARQLPALKEAGLTAVN--ISLDTLRPERFQ 80
Query: 262 PLEMLIDACRHYPGLSNARRITF---EYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
L R ++ A R+ F V+++G+ND + + + + P + I +
Sbjct: 81 QLARRPGHGRVMEAIATAARLGFDPVNVVVMRGVND--DEVADFAALTRHQPVNVRFIEY 138
Query: 319 NPWPGCEYLCSDQKDIVTFSECIKR 343
P+ G + +V + E + R
Sbjct: 139 MPFDGNVW---SDSKMVPYRELLTR 160
>gi|122577959|sp|Q38HX2|HPDA_CLOSL RecName: Full=4-hydroxyphenylacetate decarboxylase activating
enzyme; AltName: Full=Csd-AE
gi|77863917|gb|ABB05048.1| 4-hydroxyphenylacetate decarboxylase activating enzyme [Clostridium
scatologenes]
Length = 312
Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 66/200 (33%), Gaps = 19/200 (9%)
Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
C C T N+ L Q + + + + S G + G
Sbjct: 89 CEKCETFDCV---NMCPNNALKQ-CVKEYTVDELMTILKRDFNNWGSDG----GVTFTG- 139
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
G+PL + + + + L DS + TSG+ + + A
Sbjct: 140 GDPLMHHEFLVEVLKKCYDSQIHK------AIETSGYAKQEVFLEVLKYIDFAFIDVKNM 193
Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL- 306
+ ++ + I+A + + R+ + G NDS +A LI+ +
Sbjct: 194 DREKHKQGTGVYNDLILSNIEALK---KSNWNGRLVLRQPTIAGYNDSDENAYKLIEFMN 250
Query: 307 KGIPAKINLIPFNPWPGCEY 326
K +INL+ F+ ++
Sbjct: 251 KNSLYEINLLKFHRLGETKW 270
>gi|227500654|ref|ZP_03930703.1| possible [formate-C-acetyltransferase]-activating enzyme
[Anaerococcus tetradius ATCC 35098]
gi|227217241|gb|EEI82585.1| possible [formate-C-acetyltransferase]-activating enzyme
[Anaerococcus tetradius ATCC 35098]
Length = 320
Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+ T G+ P + + V L + + +++ + + R+
Sbjct: 167 NTAIETCGYTPRKSLDLIKDHVDLFLFDIKQMDPVKHKYWTGVNNERI---LSNLRYLLE 223
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEY 326
N +++ +LKG+NDS + ++ L+ N L+P++ + +Y
Sbjct: 224 --NGKKVRVRMPILKGVNDSHEEIKAVVDFLEDFKCFKNFDGIDLLPYHRYGVGKY 277
>gi|222631669|gb|EEE63801.1| hypothetical protein OsJ_18625 [Oryza sativa Japonica Group]
Length = 658
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 335 VTFSECIKRSGYSSPIRTPRGLDILA---ACGQLKSLSKRIPKVPRQEMQI 382
F + + IR G DI A G+L+ +R + + Q+
Sbjct: 255 EDFDQRLMDHFVKV-IRRKHGRDIAGDARALGKLRRECERAKRALSNQHQV 304
>gi|115464027|ref|NP_001055613.1| Os05g0428600 [Oryza sativa Japonica Group]
gi|46391140|gb|AAS90667.1| putative Luminal binding protein [Oryza sativa Japonica Group]
gi|55733909|gb|AAV59416.1| putative luminal binding protein 5 [Oryza sativa Japonica Group]
gi|113579164|dbj|BAF17527.1| Os05g0428600 [Oryza sativa Japonica Group]
Length = 687
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 335 VTFSECIKRSGYSSPIRTPRGLDILA---ACGQLKSLSKRIPKVPRQEMQI 382
F + + IR G DI A G+L+ +R + + Q+
Sbjct: 284 EDFDQRLMDHFVKV-IRRKHGRDIAGDARALGKLRRECERAKRALSNQHQV 333
>gi|303238883|ref|ZP_07325414.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
gi|302593516|gb|EFL63233.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
Length = 448
Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 20/192 (10%)
Query: 117 CVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
C+ C+L C +C+ TG R++ + E+ + +I
Sbjct: 95 CLHISHDCNLRCKYCFASTGDFGGQRSMMSSEV----------------GKKAIDFIIKE 138
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
G + + V + GEPL NF+ VK+ ++ A + R TL+T+ + +I
Sbjct: 139 SGSRKNLEVDLFGGEPLMNFEVVKEIVAYAKSKEKEAGKNFRFTLTTNAILLNEDIKNYV 198
Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
E + +S+ + ++ ++ + R +
Sbjct: 199 NENMQNVVLSIDGRKEVNDKMRYRVDGTGCYSDIMPKIKDMADSRGQDRYYVRGTFTREN 258
Query: 293 NDSPRDALNLIK 304
D +D L+L
Sbjct: 259 LDFSKDVLHLAD 270
>gi|325262044|ref|ZP_08128782.1| radical SAM domain protein [Clostridium sp. D5]
gi|324033498|gb|EGB94775.1| radical SAM domain protein [Clostridium sp. D5]
Length = 473
Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 77/248 (31%), Gaps = 20/248 (8%)
Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
++ L + S V E ++ L V + LC+
Sbjct: 56 LKEKLGEDCSESDLREVLEAVTELTESGQLFTKDIYEDYIGE----VKQRKTVVKALCLH 111
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
C+L C +C+ E R L + + +I + G +
Sbjct: 112 IAHDCNLACKYCFA---------EEGEY-----HGRRALMSYEVGKKALDFLIANSGSRR 157
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGV 237
+ V GEPL N+ VK ++ + L R TL+T+G + +
Sbjct: 158 NLEVDFFGGEPLMNWQVVKDLVAYGREQEKLHNKHFRFTLTTNGVLLNDEVQEFVNREMD 217
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+ +SL + N K ++++ + N + + D +
Sbjct: 218 NVVLSLDGRKEVNDRMRPFRNGKGSYDLIVPKFQKLADSRNQEKYYIRGTFTRENLDFSK 277
Query: 298 DALNLIKI 305
D ++ ++
Sbjct: 278 DVMHFAEL 285
>gi|229084333|ref|ZP_04216614.1| Radical SAM domain protein [Bacillus cereus Rock3-44]
gi|228698990|gb|EEL51694.1| Radical SAM domain protein [Bacillus cereus Rock3-44]
Length = 468
Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 25/242 (10%)
Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL----CVSSQVGCSLTCSFC 131
+ E I+ K + E +++ I +R T C++ C+L+C +C
Sbjct: 62 IRETIADIEELKNDRQLFTED-----EYKSLSIDLTNRKTYVKALCLNVAHTCNLSCEYC 116
Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
+ K + R+++ G I+ ++ S + +I G GEPL
Sbjct: 117 FASQGKYNGS-------------RAIMSYEVGKRAIDYLLENSGHHRNLDIDFFG-GEPL 162
Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSND 249
+ VK+ ++ A R T +T+G + I + + +SL
Sbjct: 163 MAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLNDEITDFLNKEMYNVVLSLDGRKEV 222
Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
++ + K + ++ + + + D D ++ +
Sbjct: 223 HNHLRKTVTGKGSYDYIVPKFQKFVKKRGDKEYYVRGTYTHNNIDFTNDIFHIADLGFDK 282
Query: 310 PA 311
+
Sbjct: 283 LS 284
>gi|257458169|ref|ZP_05623323.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
gi|257444463|gb|EEV19552.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
Length = 641
Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 21/156 (13%)
Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG-------IRDFQGMSDISQEV 60
L + EEL A ++G R ++ + + F + I + +
Sbjct: 446 DLYTLTVEEL-AAFERMGQKSAEKVYRA------LHAKREIPLPVFVAGFD-IEGIGRTM 497
Query: 61 RHLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
L + F + + + ++ G E++ + G + +
Sbjct: 498 MEKLVDAGFDTLEKLLAASEEDFAAVYQFGSVLAHTLTAGLREVKDEMLRLTGSGIIVIQ 557
Query: 120 SQVGCSLTCS-----FCYTGTQKLVRNLTAEEILLQ 150
V FC+TG ++ AE ++ Q
Sbjct: 558 PPVSAQENLPLAGKSFCFTGELNSLKRKEAEAMVQQ 593
>gi|119494459|ref|XP_001264125.1| hypothetical protein NFIA_009060 [Neosartorya fischeri NRRL 181]
gi|119412287|gb|EAW22228.1| predicted protein [Neosartorya fischeri NRRL 181]
Length = 695
Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 7/129 (5%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
R + L+T+G + + E + +SL + I+ + I+
Sbjct: 166 RELCLTTNGISLHRKLEDMVEAGLTGVNLSLDTLDPFQFQIMTRRKGFEAVMKSIERILA 225
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
+ V+++GIND + L +++ + P ++ I + P+ G ++ Q
Sbjct: 226 LNRAGAGITLKINCVVMRGINDR--EILPFVELGRDSPIEVRFIEYMPFDGNKW---SQG 280
Query: 333 DIVTFSECI 341
+V++ E +
Sbjct: 281 KMVSYQEML 289
>gi|291087012|ref|ZP_06345142.2| radical SAM domain protein [Clostridium sp. M62/1]
gi|291076635|gb|EFE13999.1| radical SAM domain protein [Clostridium sp. M62/1]
Length = 462
Score = 36.6 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 18/198 (9%)
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + + ++ + G
Sbjct: 96 CLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMTYEVGKKALDFLVANSG 141
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+I+ V GEPL N+D VK+ ++ K R TL+T+G + I +
Sbjct: 142 NRINLEVDFFGGEPLMNWDVVKQLVAYGRSLEKPHNKKFRFTLTTNGVLLNDEIMEFCNK 201
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +SL + N K ++++ + + L A R F N
Sbjct: 202 EMSNVVLSLDGRKEVNDRMRPFRNGKGSYDLIVPKFQKFAKLR-ADRDYFVRGTFTRNNL 260
Query: 294 DSPRDALNLIKILKGIPA 311
D D L+ + +
Sbjct: 261 DFADDVLHFADLGFEKMS 278
>gi|269139528|ref|YP_003296229.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda
EIB202]
gi|267985189|gb|ACY85018.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda
EIB202]
gi|304559417|gb|ADM42081.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda
FL6-60]
Length = 246
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPW 321
++ CR+ + ++ YV++ G +D A L + K + KI L+P++
Sbjct: 148 HRTLEFCRYLAKRN--QKTWIRYVVVPGWSDDEASARLLGEFTKDMKNIEKIELLPYHEL 205
Query: 322 PGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
++ ++ + + G+
Sbjct: 206 GKHKWEAMGETYQLGDVKPPSREIMERVKGILTEYGHKV 244
>gi|153854676|ref|ZP_01995926.1| hypothetical protein DORLON_01924 [Dorea longicatena DSM 13814]
gi|149752780|gb|EDM62711.1| hypothetical protein DORLON_01924 [Dorea longicatena DSM 13814]
Length = 465
Score = 36.6 bits (83), Expect = 6.8, Method: Composition-based stats.
Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 16/205 (7%)
Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
IE V + LC+ C+L C +C+ E R L +
Sbjct: 95 IEEVKKRKTVVKALCLHIAHDCNLACKYCFA---------EEGEY-----HGRRALMSYE 140
Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
+ +I + G + + V GEPL N+ VK ++ + + R T++T+
Sbjct: 141 VGKKALDFLIKNSGNRRNLEVDFFGGEPLMNWQVVKDLVAYGREQEKIHNKHFRFTITTN 200
Query: 223 GFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
G + I + + +SL + N K ++++ + N
Sbjct: 201 GVLLNDEIQEFVNKEMDNVVLSLDGRKEINDQMRPFRNGKGSYDLIVPKFQKLAESRNQE 260
Query: 281 RITFEYVMLKGINDSPRDALNLIKI 305
+ + D D ++ +
Sbjct: 261 KYYIRGTFTRNNLDFSNDIMHFADL 285
>gi|220904669|ref|YP_002479981.1| MiaB family RNA modification protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868968|gb|ACL49303.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 506
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 46/267 (17%), Positives = 83/267 (31%), Gaps = 31/267 (11%)
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
+ P+ +E S + I R + Q GC+ C
Sbjct: 155 EVNRPQKAEEHAS-------TTMNADTNADAANSFPSFNISTFKRARPVLKVQDGCAHRC 207
Query: 129 SFCYTGTQKLVRNLTAEEILLQVLL-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
++C L R + VL AR LL I G+ + GR
Sbjct: 208 TYC---IVPLTRGKPRSRPVEHVLAEARRLLESGHVEIMISGINLGQYGRDAQTGDFW-- 262
Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
N+ ++L A ++ RI+ G + A ML LH
Sbjct: 263 --------NLLRTLDTALAPEFAGLARFRISSLEPGQLDERALDILRHCRMLCPHLHISL 314
Query: 248 NDLRNILVPINRK--YPLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIK 304
++ + Y ML +A R + + ++ G ++ +D L++
Sbjct: 315 QHGSRNVLKRMGRGHYSPAMLEEAVRELSA--HWPAMGLGADIIAGFPGETEKDVQELLE 372
Query: 305 ILKGIP---AKINLIPFNPWPGCEYLC 328
++ +P A + P++ PG
Sbjct: 373 LVARLPLGYAHV--FPYSRRPGTAAER 397
>gi|115488710|ref|NP_001066842.1| Os12g0507000 [Oryza sativa Japonica Group]
gi|108862721|gb|ABA98687.2| Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
[Oryza sativa Japonica Group]
gi|113649349|dbj|BAF29861.1| Os12g0507000 [Oryza sativa Japonica Group]
gi|125536763|gb|EAY83251.1| hypothetical protein OsI_38457 [Oryza sativa Indica Group]
gi|215694512|dbj|BAG89505.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 399
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
+ + ++T+G V + R+ E L ISL + + + IDA
Sbjct: 163 KTLAMTTNGLVLSKKLPRLKECGLNALNISLDTLVPAKFEFMTRRKGHSRVMESIDAAIE 222
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
S + V+++G+ND + + +++ + P + I F P+ G +
Sbjct: 223 LGFQS----VKVNCVVMRGMND--DEICDFVEMTRDKPVNVRFIEFMPFDGNVW 270
>gi|283797321|ref|ZP_06346474.1| biotin synthase [Clostridium sp. M62/1]
gi|291074992|gb|EFE12356.1| biotin synthase [Clostridium sp. M62/1]
Length = 342
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 66/217 (30%), Gaps = 49/217 (22%)
Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
CS C +C T + L++EE++ Q + G
Sbjct: 78 RCSEDCRYCAQSVHYHTSCTEEYPLLSSEELVRQARF------------------NAAHG 119
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
+IV G DNV S+ RR T + +
Sbjct: 120 VLRYSIVTSGKRLSDAEIDNVCGSIRQI----------RRQTNIRVCVSFGLLNEAQFTK 169
Query: 237 VML--AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM--LKGI 292
+ L +H + + + + + ARR E + G+
Sbjct: 170 LRLAGVSRVHCNLESSERFFPSVCTTHTWQEKTETLKA------ARRAGLELCSGGIIGL 223
Query: 293 NDSPRDALNLIKILKGIPAK---INLIPFNPWPGCEY 326
++ D ++++ ++ + K +NL NP PG +
Sbjct: 224 GETMEDRIDMVLSIRSLGVKSVPVNL--LNPIPGTPF 258
>gi|182417509|ref|ZP_02948836.1| glycerol dehydratase activator [Clostridium butyricum 5521]
gi|237665695|ref|ZP_04525683.1| glycerol dehydratase activator [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|158427703|gb|ABW38374.1| glycerol dehydratase activator [Clostridium sp. IBUN 13A]
gi|161087403|gb|ABX56861.1| glycerol dehydratase activator [Clostridium sp. IBUN 158B]
gi|161349953|gb|ABX65444.1| glycerol dehydratase activator [Clostridium butyricum]
gi|182378678|gb|EDT76205.1| glycerol dehydratase activator [Clostridium butyricum 5521]
gi|193200834|gb|ACF15539.1| glycerol dehydratase activator [Clostridium sp. IBUN 22A]
gi|237658642|gb|EEP56194.1| glycerol dehydratase activator [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 304
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEYLC----------- 328
I +++G N + + + K + +I+L+P++ + +Y
Sbjct: 219 IIIRIPVIEGFNADLQSIGAIAQFSKSLTNLKRIDLLPYHNYGENKYQAIGREYSLKELK 278
Query: 329 -SDQKDIVTFSECIKRSGYSSPI 350
+ + ++ G I
Sbjct: 279 SPSKDKMERLKALVEIMGIPCTI 301
>gi|27461256|gb|AAM54729.1| glycerol dehydratase activator [Clostridium butyricum]
Length = 304
Score = 36.6 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEYLC----------- 328
I +++G N + + + K + +I+L+P++ + +Y
Sbjct: 219 IIIRIPVIEGFNADLQSIGAIAQFSKSLTNLKRIDLLPYHNYGENKYQAIGREYSLKELK 278
Query: 329 -SDQKDIVTFSECIKRSGYSSPI 350
+ + ++ G I
Sbjct: 279 SPSKDKMERLKALVEIMGIPCTI 301
>gi|325688591|gb|EGD30608.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK72]
Length = 267
Score = 36.6 bits (83), Expect = 7.4, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
+ ++ + I ++ NDS DA + + + L+PF+ + +Y
Sbjct: 177 HYAFTHQKTIVLRIPVIPDFNDSLEDAEQFATLFNELSINQVQLLPFHQFGENKYK 232
>gi|289641895|ref|ZP_06474051.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata]
gi|289508304|gb|EFD29247.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata]
Length = 536
Score = 36.6 bits (83), Expect = 7.7, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
P +DE L G TV P C + GC C+FC
Sbjct: 193 PPLDLDELPPMALDLVADLSLYDD-TGEGTPPPTVRAPF-----TCFETSRGCHRACAFC 246
Query: 132 YTGTQKLVRNLTAEEILLQVLLAR 155
T + R ++ + + R
Sbjct: 247 ATPIRGRYRYMSPDTVARHFAYFR 270
>gi|125717152|ref|YP_001034285.1| pyruvate formate-lyase 3 [Streptococcus sanguinis SK36]
gi|125497069|gb|ABN43735.1| Pyruvate formate-lyase 3, putative [Streptococcus sanguinis SK36]
gi|328945301|gb|EGG39454.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK1087]
Length = 267
Score = 36.6 bits (83), Expect = 7.7, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY----- 326
+ ++ + I ++ NDS DA + + + L+PF+ + +Y
Sbjct: 177 HYAFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGR 236
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+D+ + + + +
Sbjct: 237 KYAMEDVKALHPEDLFEYQDVFLKHDINC 265
>gi|156084982|ref|XP_001609974.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797226|gb|EDO06406.1| hypothetical protein BBOV_II004510 [Babesia bovis]
Length = 1736
Score = 36.2 bits (82), Expect = 7.9, Method: Composition-based stats.
Identities = 38/324 (11%), Positives = 83/324 (25%), Gaps = 53/324 (16%)
Query: 38 IWKWIYVRGIRD-------------------------FQGMSDISQEVRHLLNQHFSIIY 72
++K IY G+ D F MS+ +++ L +
Sbjct: 868 LYKHIYENGLVDRCTMEIVKGVSNLFGIKENENLSTCFDKMSNCLKDLTEKLEKLCPAST 927
Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS--- 129
++ K R + ++ L + C
Sbjct: 928 TGKIECINDICSELKTFFRSFSDVQKSNNRKAFCKEQSDNKAILGLLLYNCTIGECHGES 987
Query: 130 FCYTGTQKLVRNLTA-EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
TG + I+ Q+ + + ++ + G I +
Sbjct: 988 TMSTGKSCSNPCCKSLACIISQITKHINGSSEESSPNPVQCTNEDTTGYMGKCIYNKPIS 1047
Query: 189 EPLCNFD-NVKKSLSIASDSMGLSFSKRRITLST-----SGFVPNIARVGEEIGVMLAIS 242
+ + ++ +++ SD G R S ++ S
Sbjct: 1048 TLISECNCSLSMLMNMCSDEKGKETDNRNSISSKLKSLCCKITDVKEQM---------CS 1098
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG---INDSPRDA 299
L + L N L + + ++ M + N + D
Sbjct: 1099 LRECLSWLNCEY--NNYCMKLSEVEGVLKERYSKQCETICKLQHYMDENGETYNKAIEDI 1156
Query: 300 LNLIKILKGIPAK----INLIPFN 319
+++K + + AK +N I N
Sbjct: 1157 KDIVKQISQLSAKHGVAVNYIDGN 1180
>gi|39998236|ref|NP_954187.1| molybdenum cofactor biosynthesis protein A [Geobacter
sulfurreducens PCA]
gi|59798352|sp|Q747W9|MOAA_GEOSL RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|39985182|gb|AAR36537.1| molybdenum cofactor biosynthesis protein A, putative [Geobacter
sulfurreducens PCA]
gi|298507174|gb|ADI85897.1| pyranopterin triphosphate synthase [Geobacter sulfurreducens KN400]
Length = 326
Score = 36.2 bits (82), Expect = 8.0, Method: Composition-based stats.
Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 30/205 (14%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
+S C+L CS+C E + ++ L + + I
Sbjct: 16 LSVTDRCNLRCSYC-----------MPAEGVEKLAHGDILSYEDLFRIARAAVAIGIEKI 64
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
+I+ GEPL V+K + + R++ L+T+G + + + ++
Sbjct: 65 RITG------GEPL-----VRKGIVPFLARIAAIEGLRQLVLTTNGLL--LPEMAADLRS 111
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDS 295
L+ + LR + L V+++G+ND
Sbjct: 112 AGVQRLNISLDSLRADTFR--AITRIGELQRVLDGIAAADAAGFPPPKINMVVMRGVNDG 169
Query: 296 PRDALNLIKILKGIPAKINLIPFNP 320
+ + ++ P + I + P
Sbjct: 170 --EVADFARLTIDRPCTVRFIEYMP 192
>gi|168335416|ref|ZP_02693507.1| biotin synthase [Epulopiscium sp. 'N.t. morphotype B']
Length = 316
Score = 36.2 bits (82), Expect = 8.0, Method: Composition-based stats.
Identities = 28/230 (12%), Positives = 71/230 (30%), Gaps = 31/230 (13%)
Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
T+ + CS C +C + T +L ++ + + + + + + +
Sbjct: 52 TIINAKSGRCSEDCKYCA-QSVHYKTVCTEYPLLSSDIIKKEAIRN--AKQGVMRYSMVT 108
Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
G+ +++ + + + N R + + G + R E
Sbjct: 109 SGKNVTDAEIDTICDIAENM--------------------RDVPIKLCGSFGLLKRAQYE 148
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
++ + + P A + + + + GI +
Sbjct: 149 KLYHAGLTRMHNNLETSQRNFPNMCSTHSFEDKIAS---INEAKSVGMYICSGAIIGIGE 205
Query: 295 SPRDALNLIKILKGIPAK---INLIPFNPWPGCEYLCSDQKDIVTFSECI 341
+ D ++L L+ + + IN+ NP G Y D+ F + +
Sbjct: 206 TFEDRIDLAFSLRELNVQSVPINM--LNPVKGTPYETLDKITEEDFRKTV 253
>gi|325689506|gb|EGD31511.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK115]
Length = 267
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY----- 326
+ ++ + I ++ NDS DA + + + L+PF+ + +Y
Sbjct: 177 HYAFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGR 236
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+D+ + + + +
Sbjct: 237 KYAMENVKALHPEDLFEYQDVFLKHDINC 265
>gi|327459536|gb|EGF05882.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK1]
Length = 267
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY----- 326
+ ++ + I ++ NDS DA + + + L+PF+ + +Y
Sbjct: 177 HYAFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGR 236
Query: 327 -------LCSDQKDIVTFSECIKRSGYSS 348
+D+ + + + +
Sbjct: 237 KYAMKDVKALHPEDLFEYQDVFLKHDINC 265
>gi|302339491|ref|YP_003804697.1| radical SAM protein [Spirochaeta smaragdinae DSM 11293]
gi|301636676|gb|ADK82103.1| Radical SAM domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 421
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 34/249 (13%), Positives = 79/249 (31%), Gaps = 40/249 (16%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C++ C +C + + + A++ L + ++ V +
Sbjct: 30 KCNIQCKYC-SRKYDCINEGRPGVSSAVLSPAQATLYLEKISQVVKPGV----------V 78
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240
+ G G+ + ++L F + LST+G + V +
Sbjct: 79 GIAGPGDAFAEPEKTLETLDRCR----RLFPEMLFCLSTNGLNAPDYVDAVASLGVTHVT 134
Query: 241 ISLHAVSND----LRNILVPINRKYPLEMLIDACRHYPGLS------NARRITFEYVMLK 290
++++A+ + + + R Y + + + +++
Sbjct: 135 VTINALDPRVATSIYSWVRCKKRNYRGLDAAEILLERQIETVRRLKERGLIVKINTLLIP 194
Query: 291 GINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEY---LCSDQKDIVTFSECIKRSG 345
GIN+ P A ++ + +N+IP P G E+ K + +G
Sbjct: 195 GINEGEIPSVARKACELGCDL---MNIIPLIPVKGTEFADLKEPSCKIVEEMRS---SAG 248
Query: 346 YSSPIRTPR 354
+ IR R
Sbjct: 249 --TYIRQSR 255
>gi|300855530|ref|YP_003780514.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii
DSM 13528]
gi|300435645|gb|ADK15412.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii
DSM 13528]
Length = 423
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 33/220 (15%)
Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
C+++C+FC + N T + +VL P + ++ R ++ +
Sbjct: 37 KCNVSCNFC--NRKYDCVNETRPGVTSEVL--------TPEGARDKFKIVRDKVRNLTVV 86
Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLA 240
+ G G+PL NFD KKS+ + LST+G ++ E L
Sbjct: 87 GIAGPGDPLANFDETKKSIELIKKESKDI----TFCLSTNGLMLPFYADKLIELGVTHLT 142
Query: 241 ISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
++++AV + + + L + ++ VM
Sbjct: 143 VTINAVDPKIGGKVYKFVNYLGDTFVGEEAGRVLLNNQLSGLKY--AAQKGIVCKVNIVM 200
Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
+KGIND ++K +K A + N++ P +
Sbjct: 201 IKGINDL--HIPEIVKKVKECGAYMTNIMHLIPVKESVFE 238
>gi|297570189|ref|YP_003691533.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296926104|gb|ADH86914.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
Length = 327
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 39/226 (17%)
Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
C+ C +C T R+ I+ ++ R+ P+ +
Sbjct: 27 CNFNCIYCEVGPTTEFTCKRDEYTPTAAIIAEIEAFRAD---------------PAAVAR 71
Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGV 237
+ + + GEP S + + + + ++G +P+ E
Sbjct: 72 LDVVTITASGEPTL------HSGLGEIIAHCKRHIAKPVAVLSNGSLLPDPGVRRELALA 125
Query: 238 MLAI-SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
+ I SL A + + R+ L +ID + E ++ KGIND+P
Sbjct: 126 DIIIPSLDAAREESFRKINRPARECRLGEIIDGLAAFRQEFTGH-YWLEILLAKGINDTP 184
Query: 297 RDALNLIKILKGIPAKINL--IPFNPW---PGCEYLCS-DQKDIVT 336
D L +K KIN I N P + +++
Sbjct: 185 EDLAALAAAVK----KINPERIQLNTVARPPLESFARPLSIEELRA 226
>gi|73668370|ref|YP_304385.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
gi|72395532|gb|AAZ69805.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
Length = 326
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 66/195 (33%), Gaps = 19/195 (9%)
Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
S+ C+ C +C G +L + + E + + + P + S +
Sbjct: 29 SKKNCNYDCIYCQLGHVELK--IRSPEDVREAV--------TPEEVSESLQKVISNIEGL 78
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
I G EP N ++ + + G + ++S + ++
Sbjct: 79 DYITFSGTCEPTLNL-SLGEMIRNIRKISG---VPICVITNSSLLGRGDVQNNLVEADLV 134
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG-----IND 294
+ + + + + L+ +I+ R +R+ E ++L+ +N
Sbjct: 135 VATFVSGNEETWRKIHRPAPGIDLKEIIEGLRKLAKAGTGKRLALEVMLLENEAGEPLNF 194
Query: 295 SPRDALNLIKILKGI 309
+ + L+K ++ I
Sbjct: 195 TDEEIKELVKTIRYI 209
>gi|222622553|gb|EEE56685.1| hypothetical protein OsJ_06140 [Oryza sativa Japonica Group]
Length = 391
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
+ + ++T+G V + R+ E L ISL + + + IDA
Sbjct: 155 KTLAMTTNGLVLSKKLPRLKECGLNALNISLDTLVPAKFEFMTRRKGHSRVMESIDASIQ 214
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
S + V+++G+ND + + +++ + P + I F P+ G +
Sbjct: 215 LGFQS----VKVNCVVMRGMND--DEICDFVEMTRDKPVNVRFIEFMPFDGNVW 262
>gi|332981504|ref|YP_004462945.1| Radical SAM domain-containing protein [Mahella australiensis 50-1
BON]
gi|332699182|gb|AEE96123.1| Radical SAM domain protein [Mahella australiensis 50-1 BON]
Length = 454
Score = 36.2 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 16/191 (8%)
Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
+C+ C++ CS+C+ T + L ++
Sbjct: 97 MCLHLSHDCNMRCSYCFASTGDFGG--------------QRTLMTADTGRAALDFLVRHS 142
Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGE 233
G + V GEPL NFD +K + S R T++T+G +
Sbjct: 143 GSRRHLEVDFFGGEPLMNFDAMKDIVEYGRRLEQSSGKHIRFTVTTNGIALDQEKIKYIN 202
Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
+ + +S+ + IN K ++++ + K
Sbjct: 203 DNMDNVVLSMDGRPAINDAMRKTINGKGTYDIIMPKFKSLVDNRKHGDYYIRGTFTKRNL 262
Query: 294 DSPRDALNLIK 304
D D ++++
Sbjct: 263 DFAEDVMHIVD 273
>gi|120601540|ref|YP_965940.1| glycyl-radical activating family protein [Desulfovibrio vulgaris
DP4]
gi|120561769|gb|ABM27513.1| glycyl-radical enzyme activating protein family [Desulfovibrio
vulgaris DP4]
Length = 307
Score = 36.2 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 3/118 (2%)
Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
+ T G+ + + +D R+ + + A R
Sbjct: 168 HTAVETCGYASWDDMAAALPFLNYVLYDIKNLDDARHKEATGVSNQRIVENLRALR---A 224
Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKD 333
+ ++ G ND+ D + + + + L+P++ +Y D++
Sbjct: 225 EFPGIPVLVRTPVIPGFNDNEDDIAAIAALTRELGVSYQLLPYHRLGTQKYHFLDREA 282
>gi|254719054|ref|ZP_05180865.1| molybdenum cofactor biosynthesis protein A [Brucella sp. 83/13]
gi|265984046|ref|ZP_06096781.1| molybdenum cofactor biosynthesis protein A [Brucella sp. 83/13]
gi|306838976|ref|ZP_07471798.1| molybdenum cofactor biosynthesis protein A [Brucella sp. NF 2653]
gi|264662638|gb|EEZ32899.1| molybdenum cofactor biosynthesis protein A [Brucella sp. 83/13]
gi|306405943|gb|EFM62200.1| molybdenum cofactor biosynthesis protein A [Brucella sp. NF 2653]
Length = 344
Score = 36.2 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 25/214 (11%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VS C C++C L + L + + + I R
Sbjct: 29 VSVTDRCDFRCTYCMAEHMTF--------------LPKKDLLTLEELDRLCSVFIEKGVR 74
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
K+ + GEPL + + +++ + + +T + S + +
Sbjct: 75 KLR----LTGGEPLVRKNIMHLIGNLSRHLKSGALDELTLTTNGSQLARFAGELADCGVR 130
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+ +SL ++ + + + IDA R + V LK ND
Sbjct: 131 RINVSLDTLNPEKFRTITRWGDLPRVLEGIDAAR-----KAGIHVKINAVALKDFND--A 183
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
+ LI+ G + LI P E+ +DQ
Sbjct: 184 EIPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217
>gi|306843858|ref|ZP_07476453.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO1]
gi|306275613|gb|EFM57337.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO1]
Length = 344
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 25/214 (11%)
Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
VS C C++C L + L + + + I R
Sbjct: 29 VSVTDRCDFRCTYCMAEHMTF--------------LPKKDLLTLEELDRLCSVFIEKGVR 74
Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
K+ + GEPL + + +++ + + +T + S + +
Sbjct: 75 KLR----LTGGEPLVRKNIMHLIGNLSRHLKSGALDELTLTTNGSQLARFAGELADCGVR 130
Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
+ +SL ++ + + + IDA R + V LK ND
Sbjct: 131 RINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAR-----KAGIHVKINAVALKDFND--A 183
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
+ LI+ G + LI P E+ +DQ
Sbjct: 184 EIPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217
>gi|16520007|ref|NP_444127.1| hypothetical 19.4 kDa protein [Sinorhizobium fredii NGR234]
gi|2496764|sp|P55685|Y4WG_RHISN RecName: Full=Uncharacterized protein y4wG
gi|2182696|gb|AAB91914.1| hypothetical 19.4 kDa protein [Sinorhizobium fredii NGR234]
Length = 181
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
+ +CR ++A++ T + L +DS + +G A+I+ I G
Sbjct: 1 MTASCRIRRNSNSAQKSTMGWSALS-TSDSKVFYRVAWLLGRGKMAEIDAILITDVNGIG 59
Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI--------LAACGQL----KSLSKRIP 373
+ D + F I G ++ + G +I +AACGQL + + +
Sbjct: 60 ---TTADDQLAFVSLIADQGETTTV--AFGPEIGSRIAASFMAACGQLQHQIATRTGKEE 114
Query: 374 KV 375
+
Sbjct: 115 RK 116
>gi|325282230|ref|YP_004254772.1| glycyl-radical enzyme activating protein family [Odoribacter
splanchnicus DSM 20712]
gi|324314039|gb|ADY34592.1| glycyl-radical enzyme activating protein family [Odoribacter
splanchnicus DSM 20712]
Length = 260
Score = 36.2 bits (82), Expect = 9.4, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 259 RKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKILKGIPAK--INL 315
Y + +AC H ++ + ++ G ND + I+ L+ +P +NL
Sbjct: 156 EAYIGKGFREACEHLRKIAGQGAGVIVRIPVIPGFNDDKKSVQETIRFLQTMPVLKEVNL 215
Query: 316 IPFNPWPGCEYLC 328
+PF+ +Y
Sbjct: 216 LPFHRTGADKYKR 228
>gi|215769204|dbj|BAH01433.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 288
Score = 36.2 bits (82), Expect = 9.5, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 215 RRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
+ + ++T+G V + R+ E L ISL + + + IDA
Sbjct: 158 KTLAMTTNGLVLSKKLPRLKECGLNALNISLDTLVPAKFEFMTRRKGHSRVMESIDASIQ 217
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
S + V+++G+ND + + +++ + P + I F P+ G +
Sbjct: 218 LGFQS----VKVNCVVMRGMND--DEICDFVEMTRDKPVNVRFIEFMPFDGNVW 265
>gi|238920354|ref|YP_002933869.1| pyruvate formate lyase-activating enzyme 1 [Edwardsiella ictaluri
93-146]
gi|238869923|gb|ACR69634.1| pyruvate formate-lyase 1-activating enzyme, putative [Edwardsiella
ictaluri 93-146]
Length = 246
Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPW 321
++ CR+ + ++ YV++ G +D A L + K + KI L+P++
Sbjct: 148 HRTLEFCRYLAKRN--QKTWIRYVVVPGWSDDEASARLLGEFTKDMKNIEKIELLPYHEL 205
Query: 322 PGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
++ ++ + + G+
Sbjct: 206 GKHKWEAMGETYQLGDVKPPSREIMEKVKGILTEYGHKV 244
>gi|331083066|ref|ZP_08332183.1| hypothetical protein HMPREF0992_01107 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405068|gb|EGG84605.1| hypothetical protein HMPREF0992_01107 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 456
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 32/252 (12%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI-ETVYIPEKSRGTL---- 116
L + +K K + + +I K R T+
Sbjct: 46 EKLKDTY---------KKDDIQTALKEIQELKDAEMLFTEDIYRNAIEHFKERETVVKAL 96
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + + +I + G
Sbjct: 97 CLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKQALDFLIANSG 142
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ + V GEPL N+ VK ++ + + R TL+T+G + I +
Sbjct: 143 NRKNLEVDFFGGEPLMNWQVVKDLVAYGREQEKIHNKNFRFTLTTNGVLLDDEIMEFANK 202
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +S+ + + + P + L+ S + + N
Sbjct: 203 EMANVVLSIDGRKE-VHDFMRPFRKGAGSYDLVVPKFQKFAKSRGEKSYYARGTFTRHNL 261
Query: 294 DSPRDALNLIKI 305
D D L+L +
Sbjct: 262 DFSEDVLHLADL 273
>gi|322390044|ref|ZP_08063580.1| pyruvate formate-lyase activating enzyme [Streptococcus
parasanguinis ATCC 903]
gi|321143251|gb|EFX38693.1| pyruvate formate-lyase activating enzyme [Streptococcus
parasanguinis ATCC 903]
Length = 264
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 39/259 (15%), Positives = 79/259 (30%), Gaps = 59/259 (22%)
Query: 116 LCVSSQVGCSLTCSFCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
V Q GC + C +C+ T R T +++L + L R G G
Sbjct: 31 FIVFLQ-GCQMRCQYCHNPDTWAMETNK---SRERTVDDVLEEALRYRGFWGQKGGITVS 86
Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
G + + I + E + +L + L R + ++ +
Sbjct: 87 GGEALLQIDFLI--ALFTKAQELGIHCTLDTCALPFRNTPRYLEKFDRLMAVTDLVLLDI 144
Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
ND R+ +V I AC Y + + +V
Sbjct: 145 KE-----------------INDERHKIVTS----HTNKTILACAKYLS-DIGKPVWIRHV 182
Query: 288 MLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKD 333
++ G+ D D + L K +K + K ++P++ ++ ++
Sbjct: 183 LVPGLTDRDDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYKLEGVKPPTKER 242
Query: 334 IVT---------FSECIKR 343
+ + + +KR
Sbjct: 243 VQNAKDLMETESYQDYLKR 261
>gi|260589634|ref|ZP_05855547.1| radical SAM domain protein [Blautia hansenii DSM 20583]
gi|260539874|gb|EEX20443.1| radical SAM domain protein [Blautia hansenii DSM 20583]
Length = 456
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 32/252 (12%)
Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI-ETVYIPEKSRGTL---- 116
L + +K K + + +I K R T+
Sbjct: 46 EKLKDTY---------KKDDIQTALKEIQELKDAEMLFTEDIYRNAIEHFKERETVVKAL 96
Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
C+ C+L C +C+ E R L + + +I + G
Sbjct: 97 CLHIAHDCNLACRYCFA---------EEGEY-----HGRRALMSYEVGKQALDFLIANSG 142
Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
+ + V GEPL N+ VK ++ + + R TL+T+G + I +
Sbjct: 143 NRKNLEVDFFGGEPLMNWQVVKDLVAYGREQEKIHNKNFRFTLTTNGVLLDDEIMEFANK 202
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN- 293
+ +S+ + + + P + L+ S + + N
Sbjct: 203 EMANVVLSIDGRKE-VHDFMRPFRKGAGSYDLVVPKFQKFAKSRGEKSYYARGTFTRHNL 261
Query: 294 DSPRDALNLIKI 305
D D L+L +
Sbjct: 262 DFSEDVLHLADL 273
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,321,018,827
Number of Sequences: 14124377
Number of extensions: 164881019
Number of successful extensions: 535601
Number of sequences better than 10.0: 2921
Number of HSP's better than 10.0 without gapping: 2264
Number of HSP's successfully gapped in prelim test: 657
Number of HSP's that attempted gapping in prelim test: 523050
Number of HSP's gapped (non-prelim): 3133
length of query: 384
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 243
effective length of database: 2,851,256,473
effective search space: 692855322939
effective search space used: 692855322939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 82 (36.2 bits)