254781121

 Score =  234 bits (597), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 143/185 (77%), Gaps = 1/185 (0%)

Query: 1   MFLNVLKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVY-PDLNKKLC 59
           MFL +LK+FF+   RF ++L+++     YA++    P LRN+F RW VY + PD N+K+C
Sbjct: 1   MFLRILKNFFIFGRRFFVLLIITGTPFAYADSINSNPVLRNEFIRWLVYYHSPDSNRKIC 60

Query: 60  FSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNAS 119
           ++++VP + +P  GV+HG+NFF+I LKKE   +Y+SELVMDYPLDE  MVS+EV GKN+S
Sbjct: 61  YTVTVPTSAQPETGVKHGINFFMIGLKKETKDSYISELVMDYPLDENTMVSIEVIGKNSS 120

Query: 120 GTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLA 179
           G IF M  +NNRA F+K S + +LI+EMK GKE++VSAKSKRGTNTRY+YSL GLSD+LA
Sbjct: 121 GQIFTMHPHNNRATFQKESDNEILIKEMKLGKEVIVSAKSKRGTNTRYVYSLSGLSDALA 180

Query: 180 DIRKC 184
           D+ KC
Sbjct: 181 DLPKC 185

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 11/166 (6%)

Query: 19  VLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGV 78
           +L+VSS     A+A+Q  PT  NQ++ W  Y Y D + K+C+ LS P  ++P   V HG 
Sbjct: 13  ILIVSSA----ASAAQ-TPTRMNQYNDWGTYAYNDSSGKVCYILSTPKQMQP-SNVDHGD 66

Query: 79  NFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRS 138
            FF++S K  +  AY  ++VM Y L E E V ++V G     T + M S N+ A  E  +
Sbjct: 67  IFFLVSQKPGQGIAYEPQVVMGYDLKEGEKVEVDVDG-----TKYAMFSKNDSAWMENAA 121

Query: 139 QDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRKC 184
           Q+  L+  ++ G+ + +SA SKRGTNT Y YSL G++ +L  I  C
Sbjct: 122 QEPQLVSALRAGRSMTISATSKRGTNTSYTYSLSGVTAALNSIADC 167

Species: Fulvimarina pelagi
Genus: Fulvimarina
Family: Aurantimonadaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 93/176 (52%), Gaps = 8/176 (4%)

Query: 9   FFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTV 68
            FV RI   + +M++   A  A A  P PT   QF  W  Y Y   N  +C+ LSVP T 
Sbjct: 1   MFVKRIATAVAIMLAF--ADVAAAQSPSPTRIEQFKAWGAYSYKSGNSTVCYVLSVPTTK 58

Query: 69  EPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSY 128
           EP   V HG  FFI+S +  +N +Y  + +M Y L     V++++  K+     F M + 
Sbjct: 59  EP-PSVNHGDIFFIVSQRPGQNISYEPQAMMGYTLKTGSKVTVKIDAKS-----FTMFTK 112

Query: 129 NNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRKC 184
           ++ A  E  +++  L+  MK GK + V A S RGT T Y YSL G+SD+L  I KC
Sbjct: 113 DSAAWVENAAEEPALVAAMKVGKTMSVQAVSGRGTPTNYAYSLQGISDALKRIEKC 168

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 15  RFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGV 74
           R +  L+++ ++ G ANA   +P +  QF  W  Y Y D  K LC+ L+ PVT EP   V
Sbjct: 3   RLMFALILTHLTMGTANA---QPVMLKQFGDWGAYSYRDGTKTLCYILTTPVTSEP-PNV 58

Query: 75  RHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAF 134
            HG N+FI+    +    Y  +  M Y L ++  + L++  K      F + S  NRA  
Sbjct: 59  DHGKNYFIVGPGPDPLIKYEPQAQMGYQLKDDSRIKLDIGDKT-----FWLFSRGNRAWM 113

Query: 135 EKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRKCN 185
           +  +++  L++ M+ G ++V+SA SKRGT TRY +SL G++ +L  I KC 
Sbjct: 114 QNETREPELVDAMRAGSDMVLSATSKRGTATRYSFSLSGVTAALKRIAKCQ 164

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 10/176 (5%)

Query: 9   FFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTV 68
            FV +I   + L++++  +G A+A    PT   QF+ W  Y Y   N K+C+ LSVP   
Sbjct: 1   MFVRKIATALALVMAA--SGVASAQ--SPTRIQQFNAWGAYSYQAGNGKVCYVLSVPKER 56

Query: 69  EPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSY 128
            P   V HG  FF++S +  +N +Y  + +M YPL +   V++ + G+      F M + 
Sbjct: 57  TPAS-VDHGDIFFLVSQRPGQNISYEPQAMMGYPLQDNSKVNVVIDGRT-----FVMFTK 110

Query: 129 NNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRKC 184
            N A  E  +++  L+  MK GK + V+AKS+RGT T Y YSL G+S +L  I  C
Sbjct: 111 GNSAWVENAAEEPALVAAMKSGKAMSVNAKSRRGTETSYSYSLSGISAALKQIEAC 166

Species: Sinorhizobium meliloti
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 5/144 (3%)

Query: 41  NQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMD 100
            QF  W  Y Y     K+C+ LSVP T  P  G+ HG NFFI+S +  +N +Y  + +M 
Sbjct: 76  QQFDAWGAYSYQAGAGKVCYVLSVPTTKMPATGIDHGDNFFIVSQRPGQNISYEPQAMMG 135

Query: 101 YPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSK 160
           YPL +   V + +  K      F M + +  A  E  +Q+  L+  +K G  L V+A SK
Sbjct: 136 YPLKDNSKVDVVIDNKT-----FVMFTKDKAAWVENAAQEPALVAALKSGHSLKVTATSK 190

Query: 161 RGTNTRYIYSLIGLSDSLADIRKC 184
           RGT T Y YSL G++ +L  I  C
Sbjct: 191 RGTGTTYTYSLKGVTAALKQIENC 214

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 20  LMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVN 79
           L ++ V AG A A Q  P    QF  W  Y Y   N  +C+ LSVP   +P   V HG N
Sbjct: 10  LALTLVMAGVATAQQAAPNRIQQFQAWGAYSYKSGNSTVCYVLSVPTAKQPAS-VDHGDN 68

Query: 80  FFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQ 139
           FFI+S +  +N +Y  + +M Y + E   +++ +  K      F M + +     E  +Q
Sbjct: 69  FFIVSQRPGQNISYEPQAMMGYTVKESSKINVVIDNKT-----FVMFTKDKAGWVENAAQ 123

Query: 140 DTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRKC 184
           +  L+  MK G  + V+A S++GT T Y YSL G+S +L  I  C
Sbjct: 124 EPALVAAMKTGHSMTVNAVSRKGTGTSYSYSLSGISAALKQIETC 168

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 6/167 (3%)

Query: 18  IVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHG 77
           IV  ++ V A    AS   PT   QF+ W  Y Y   N K+C+ LSVP    P   V HG
Sbjct: 6   IVTALAFVLAASGVASAQSPTRIQQFNAWGAYSYQAGNGKVCYVLSVPKEKSPAS-VDHG 64

Query: 78  VNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKR 137
             FF++S +  +N +Y  + +M Y L +   V++ V G+      F M +  N A  E  
Sbjct: 65  DIFFLVSQRPGQNISYEPQAMMGYQLQDNSKVNVVVDGRT-----FVMFTKGNSAWVENA 119

Query: 138 SQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRKC 184
           +++  L+  MK GK + V+AKS+RGT T Y YSL G+S +L  I  C
Sbjct: 120 AEEPALVAAMKSGKAMSVNAKSRRGTETSYSYSLSGISAALKQIEAC 166

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 10  FVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVE 69
           FV  +   + ++++SV      AS   PT   QF+ W  Y Y   N  +C+ LS+P + E
Sbjct: 2   FVRSVATAVAILLTSVGV----ASAQSPTRIQQFNAWGAYSYKSGNSTVCYVLSIPTSKE 57

Query: 70  PLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYN 129
           P   V HG  FFI+S +  +N +Y  + ++ YPL +   V++ +  KN     F M + +
Sbjct: 58  PAS-VDHGDIFFIVSQRPGQNISYEPQAMVGYPLKQGSKVNVTIDNKN-----FVMFTKD 111

Query: 130 NRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRKC 184
             A  E  +++  L+  MK GK + V A S RGT T Y YSL G+S +   I  C
Sbjct: 112 KAAWVENAAEEPALVAAMKGGKSMTVKAVSGRGTATSYSYSLSGISAAFKQIESC 166

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 80/158 (50%), Gaps = 6/158 (3%)

Query: 27  AGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLK 86
           AG A A Q  PT   QF  W  Y Y      +C+ LSVP   +P   V HG NFFI+S +
Sbjct: 17  AGVATAQQAAPTRIQQFQAWGAYSYKSGASTVCYVLSVPTAKQPAS-VDHGDNFFIVSQR 75

Query: 87  KEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEE 146
             +N +Y  + +M Y + E   +++ +  K      F M + +     E  +Q+  L+  
Sbjct: 76  PGQNISYEPQAMMGYTVKENSKINVVIDNKT-----FVMFTKDKAGWVENAAQEPALVAA 130

Query: 147 MKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRKC 184
           MK G  + V+A S++GT T Y YSL G+S +L  I  C
Sbjct: 131 MKTGHSMTVNAVSRKGTGTSYSYSLSGISAALKQIESC 168

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

Probab=99.86  E-value=1.2e-20  Score=145.94  Aligned_cols=132  Identities=17%  Similarity=0.221  Sum_probs=106.7

Q ss_pred             CCCEEEEEEECCC-CCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCC
Q ss_conf             3775899993598-716556641200023444555530579986178776103689831034677726999716655544
Q gi|254781121|r   43 FSRWSVYVYPDLN-KKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGT  121 (185)
Q Consensus        43 f~dW~v~~~~~~~-~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~~~~~~~  121 (185)
T Consensus         1 fgdW~~~C~~~~~~~~~C~~~Q~~~~~~-----~~~~v~~~~i~~~~~~~~~~~~i~~Plg~~L~~gv~l~vD~~~~--~   73 (133)
T pfam06776         1 FGDWTLRCDKQEEAKDVCNLSQLLVDEE-----TGQPVAAVSLIRLADGGKAVLTVVVPLGVLLPAGVRLSVDGGKP--V   73 (133)
T ss_pred             CCCCEEEECCCCCCCCCCEEEEEEEECC-----CCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEECCCCC--E
T ss_conf             9980789178988878647899998278-----99789999999768998079999828846569874899889883--0


Q ss_pred             CCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHH
Q ss_conf             431000378741024566967899973677699999918998899985144289999988
Q gi|254781121|r  122 IFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADI  181 (185)
Q Consensus       122 ~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~  181 (185)
T Consensus        74 ~~~~~~C~~~GC~a~~~l~~~~l~~lk~g~~~~i~~~~~~~~~v~i~~sL~Gf~~A~~~L  133 (133)
T pfam06776        74 RLPFSTCLPNGCVAEIPLDDALLAALKKGKTATLSFVPAPGQPVTIPVSLKGFTAALDAL  133 (133)
T ss_pred             EEEEEEECCCCEEEEEECCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHC
T ss_conf             862168878846998776999999987799799999917999899988543479899619

This family consists of several invasion associated locus B (IalB) proteins and related sequences. IalB is known to be a major virulence factor in Bartonella bacilliformis where it was shown to have a direct role in human erythrocyte parasitism. IalB is upregulated in response to environmental cues signaling vector-to-host transmission. Such environmental cues would include, but not be limited to, temperature, pH, oxidative stress, and haemin limitation. It is also thought that IalB would aide B. bacilliformis survival under stress-inducing environmental conditions. The role of this protein in other bacterial species is unknown.

Probab=99.81  E-value=7.2e-19  Score=135.00  Aligned_cols=138  Identities=14%  Similarity=0.228  Sum_probs=114.0

Q ss_pred             HHHCCCCCEEEEEEECC-CCCEEEEEECCCCCCCCCCCCCCCEEEEE-EECCCCCCCEEEEEEEEECCCCCCCEEEEECC
Q ss_conf             11012377589999359-87165566412000234445555305799-86178776103689831034677726999716
Q gi|254781121|r   38 TLRNQFSRWSVYVYPDL-NKKLCFSLSVPVTVEPLEGVRHGVNFFII-SLKKEENSAYVSELVMDYPLDEEEMVSLEVKG  115 (185)
Q Consensus        38 ~~~~~f~dW~v~~~~~~-~~~~C~i~s~p~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~  115 (185)
T Consensus        40 ~~~~~~g~W~v~C~~~~~~~~~C~l~q~v~a------~~~~~~~l~v~i~~~~~~~~~~~~v~~P~G~llp~Gv~lqiD~  113 (181)
T COG5342          40 TLKETHGAWSVNCSKQEGDNDQCALSQNVTA------ANGQQRVLSVEIRRTADNGRKILTVLVPFGLLLPKGVSLQIDD  113 (181)
T ss_pred             CCCCCCCCEEEEECCCCCCCCHHHHHHHHHH------HCCCEEEEEEEEEEECCCCCEEEEEEECCCEECCCCCEEEECC
T ss_conf             6667888607875577788633788889987------1477389999999954778488999703320137971577579


Q ss_pred             CCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf             65554443100037874102456696789997367769999991899889998514428999998873
Q gi|254781121|r  116 KNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRK  183 (185)
Q Consensus       116 ~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~~k  183 (185)
T Consensus       114 ~k~--~~~~f~~C~p~GC~A~v~l~~~ll~~Lk~Gt~l~~~~~~~~~~~v~i~v~LkGF~~ald~l~~  179 (181)
T COG5342         114 GKI--GKLYFVTCFPDGCYAEVPLDDELLAALKSGTTLTFTSTADQEQPVPIPVSLKGFGEALDRLPE  179 (181)
T ss_pred             CCC--EEEEEEEECCCCEEEEEECCHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHCHH
T ss_conf             853--037899964786489862799999997579848998751578874047864654777610110

Probab=98.81  E-value=1.2e-07  Score=66.41  Aligned_cols=132  Identities=17%  Similarity=0.241  Sum_probs=87.3

Q ss_pred             HHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCC--CCCEEEEECCC
Q ss_conf             1012377589999359871655664120002344455553057998617877610368983103467--77269997166
Q gi|254781121|r   39 LRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDE--EEMVSLEVKGK  116 (185)
Q Consensus        39 ~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~~~--~~~v~l~Id~~  116 (185)
T Consensus        11 ~~~~~kDW~v~CDN---t~tC~A~gy~~~-----~-~~~~~sl~ltR~AGa~~~v~~~v~l~~~~~~~~~~~~~L~iDg~   81 (338)
T pfam06674        11 LYFSFKDWQVVCDN---TNTCRAAGYGSD-----D-GDAPVSLLLTRSAGPGAQVELRLSLGEPDPDIPTGALRLLIDGK   81 (338)
T ss_pred             CEEEECCEEEECCC---CCCEEECCCCCC-----C-CCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEECCC
T ss_conf             40451784896899---774666025676-----7-98736999997668999859999927744557887608998994


Q ss_pred             CCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf             5554443100037874102456696789997367769999991899889998514428999998873
Q gi|254781121|r  117 NASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRK  183 (185)
Q Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~~k  183 (185)
T Consensus        82 ~lg~~~~~~~~~~~~~~~l~~~qv~alL~al~~~~~i~~~~--~~g~--~~~lSl~G~~AaLLkmDe  144 (338)
T pfam06674        82 PLGALGAAWQAATDNELTLTGAQVTALLQALRNGSKISLKD--GAGD--RWTLSLSGLSAALLKMDE  144 (338)
T ss_pred             CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCC--EEEEECCCHHHHHHHHHH
T ss_conf             75666310045766431469899999999972598599980--8986--788764227889887764

This family consists of several hypothetical bacterial proteins of around 340 residues in length. Members of this family contain six highly conserved cysteine residues. The function of this family is unknown.

 Score = 80.9 bits (199), Expect = 2e-16
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 16/171 (9%)

Query: 21  MVSSVSAGYANASQP--EPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGV 78
              S +     A+ P    +L   +  WS+       KK+CF     V  +     R  V
Sbjct: 5   NSKSTTTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEVNDQN----RVVV 60

Query: 79  NFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRS 138
              ++       S  ++ +     + +   V L+V    A      +++           
Sbjct: 61  AMSVVLNADGVVSGNLT-VPFGILVSKP--VRLQVDEGKAVIE-TGIRTCVPAGCIVPIV 116

Query: 139 QDTVLIEEMKRGKELVVS---AKSKRGTNTRYIYSLIGLS---DSLADIRK 183
            D   +  ++ GK L ++   A             L G S   + L  ++K
Sbjct: 117 FDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIALQK 167

Probab=99.94  E-value=9.8e-27  Score=181.75  Aligned_cols=142  Identities=16%  Similarity=0.200  Sum_probs=116.6

Q ss_pred             CCCHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEEC
Q ss_conf             01011012377589999359871655664120002344455553057998617877610368983103467772699971
Q gi|254781121|r   35 PEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVK  114 (185)
Q Consensus        35 ~~~~~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id  114 (185)
                      ..+...++||||+++|..++++++|++.|.+...+     .+...++.+.++++++.  .+.+..|+++.+.+++.+.||
T Consensus        21 ~~~~~~etfgdW~v~C~~~~~~~~C~~~q~~~~~~-----~~~~~~~~v~~~~~~~~--~~~v~vPlG~~l~~g~~i~vD   93 (175)
T 3dtd_A           21 GASSLTETYGLWSINCGIQEGKKVCFMHRQEVNDQ-----NRVVVAMSVVLNADGVV--SGNLTVPFGILVSKPVRLQVD   93 (175)
T ss_dssp             ---CBCEEETTEEEEECCC---CCEEEEEEEEBTT-----CCEEEEEEEEECTTSCE--EEEEEECSSBCTTSCEEEEET
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCC-----CCEEEEEEEEECCCCCE--EEEEEEECCCCCCCCCEEEEE
T ss_conf             88001125378527971379997799998775578-----98889999997889863--799999455105999789997


Q ss_pred             CCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEEC---CCCCEEEEEEECCCHHHHHHHHHHC
Q ss_conf             665554443100037874102456696789997367769999991---8998899985144289999988734
Q gi|254781121|r  115 GKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKS---KRGTNTRYIYSLIGLSDSLADIRKC  184 (185)
Q Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s---~~g~~~~~~~SL~GFt~A~~~~~kc  184 (185)
                      +++. ...+.|.+|++.||++....|+++|++||+|++++|.+..   .+|+.++++|||+||++||+++++|
T Consensus        94 ~g~~-~~~l~~~~C~~~gC~a~~~~~~~~i~amk~G~~~~v~~~~~~~~~~~~~~~~~SL~Gft~Al~~L~e~  165 (175)
T 3dtd_A           94 EGKA-VIETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIAL  165 (175)
T ss_dssp             TSSC-EEEECCCEEETTEEEEEEEECHHHHHHHHHCSEEEEEEEBSSTTCCEEEEEEEECTTHHHHHHHHHHH
T ss_pred             CCCC-EEEEEEEEECCCCEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             6984-05776788747852988368989999998188447999974688897788778424599999999998

 Score =  102 bits (256), Expect = 2e-23
 Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 11/172 (6%)

Query: 16  FLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVR 75
            L     ++     A       +L   +  WS+       KK+CF     V         
Sbjct: 2   SLSNSKSTTTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEVN-------D 54

Query: 76  HGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFE 135
                  +S+    +      L + + +   + V L+V    A      +++        
Sbjct: 55  QNRVVVAMSVVLNADGVVSGNLTVPFGILVSKPVRLQVDEGKAVIET-GIRTCVPAGCIV 113

Query: 136 KRSQDTVLIEEMKRGKELVVS---AKSKRGTNTRYIYSLIGLSDSLADIRKC 184
               D   +  ++ GK L ++   A             L G S++L  +   
Sbjct: 114 PIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIAL 165

Probab=99.96  E-value=4.6e-29  Score=196.96  Aligned_cols=154  Identities=15%  Similarity=0.191  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECC
Q ss_conf             99986543321010110123775899993598716556641200023444555530579986178776103689831034
Q gi|254781121|r   24 SVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPL  103 (185)
Q Consensus        24 ~~~~~~a~a~~~~~~~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~  103 (185)
                      ......+.++++++...++|+||+++|.+++++++|++.|.+.       .++++.++.+.+++.++...++++..||++
T Consensus        10 ~~~~~~a~~~~~~~~~~~~f~dW~~~C~~~~~~~~C~~~q~~~-------~~~g~~~~~i~~~~~~~~~~~~~i~~P~g~   82 (175)
T 3dtd_A           10 TTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEV-------NDQNRVVVAMSVVLNADGVVSGNLTVPFGI   82 (175)
T ss_dssp             --------------CBCEEETTEEEEECCC---CCEEEEEEEE-------BTTCCEEEEEEEEECTTSCEEEEEEECSSB
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEE-------CCCCCEEEEEEEEECCCCCEEEEEEEECCE
T ss_conf             8743113589987312435478638972379997789998760-------679966789999988998647999996760


Q ss_pred             CCCCCEEEEECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEEC---CCCCEEEEEEECCCHHHHHHH
Q ss_conf             67772699971665554443100037874102456696789997367769999991---899889998514428999998
Q gi|254781121|r  104 DEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKS---KRGTNTRYIYSLIGLSDSLAD  180 (185)
Q Consensus       104 ~~~~~v~l~Id~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s---~~g~~~~~~~SL~GFt~A~~~  180 (185)
                      .+.+++.+.||++++. ...++..|.+.||++....|.++|++||+|++++|.++.   .+|++++++|||+||++||++
T Consensus        83 ~l~~gv~~~vD~~~~~-~~~~~~~C~~~gC~a~~~~~~~~i~amk~G~~~~v~~~~~~~~~G~~v~~~~SL~Gf~~Al~~  161 (175)
T 3dtd_A           83 LVSKPVRLQVDEGKAV-IETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNR  161 (175)
T ss_dssp             CTTSCEEEEETTSSCE-EEECCCEEETTEEEEEEEECHHHHHHHHHCSEEEEEEEBSSTTCCEEEEEEEECTTHHHHHHH
T ss_pred             ECCCCCEEEEECCCCE-EEEEEEEECCCCEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHH
T ss_conf             6499978999769740-687668873775187705898999999718844799997468888668877832269999999


Q ss_pred             HHH-CC
Q ss_conf             873-49
Q gi|254781121|r  181 IRK-CN  185 (185)
Q Consensus       181 ~~k-c~  185 (185)
                      +++ |+
T Consensus       162 l~~~~~  167 (175)
T 3dtd_A          162 LIALQK  167 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999876