254781121
hypothetical protein CLIBASIA_05115
GeneID in NCBI database: | 8210146 | Locus tag: | CLIBASIA_05115 |
Protein GI in NCBI database: | 254781121 | Protein Accession: | YP_003065534.1 |
Gene range: | -(1124231, 1124788) | Protein Length: | 185aa |
Gene description: | hypothetical protein | ||
COG prediction: | none | ||
KEGG prediction: | hypothetical protein | ||
SEED prediction: | conserved hypothetical signal peptide protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 185 | hypothetical protein CLIBASIA_05115 [Candidatus Liberib | |||
315122585 | 186 | hypothetical protein CKC_04185 [Candidatus Liberibacter | 1 | 4e-60 | |
114705377 | 168 | hypothetical protein FP2506_10571 [Fulvimarina pelagi H | 1 | 3e-24 | |
222150076 | 169 | hypothetical protein Avi_4170 [Agrobacterium vitis S4] | 1 | 1e-23 | |
241518646 | 164 | hypothetical protein Rleg_5961 [Rhizobium leguminosarum | 1 | 1e-23 | |
15966968 | 167 | putative signal peptide protein [Sinorhizobium meliloti | 1 | 6e-22 | |
222087497 | 215 | hypothetical protein Arad_4379 [Agrobacterium radiobact | 1 | 2e-21 | |
116254250 | 169 | hypothetical protein RL4523 [Rhizobium leguminosarum bv | 1 | 3e-21 | |
150398263 | 167 | putative signal peptide protein [Sinorhizobium medicae | 1 | 3e-21 | |
325294044 | 167 | hypothetical protein AGROH133_08942 [Agrobacterium sp. | 1 | 7e-21 | |
86359511 | 169 | hypothetical protein RHE_CH03931 [Rhizobium etli CFN 42 | 1 | 9e-21 |
>gi|315122585|ref|YP_004063074.1| hypothetical protein CKC_04185 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 186 | Back alignment and organism information |
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Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 106/185 (57%), Positives = 143/185 (77%), Gaps = 1/185 (0%) Query: 1 MFLNVLKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVY-PDLNKKLC 59 MFL +LK+FF+ RF ++L+++ YA++ P LRN+F RW VY + PD N+K+C Sbjct: 1 MFLRILKNFFIFGRRFFVLLIITGTPFAYADSINSNPVLRNEFIRWLVYYHSPDSNRKIC 60 Query: 60 FSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNAS 119 ++++VP + +P GV+HG+NFF+I LKKE +Y+SELVMDYPLDE MVS+EV GKN+S Sbjct: 61 YTVTVPTSAQPETGVKHGINFFMIGLKKETKDSYISELVMDYPLDENTMVSIEVIGKNSS 120 Query: 120 GTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLA 179 G IF M +NNRA F+K S + +LI+EMK GKE++VSAKSKRGTNTRY+YSL GLSD+LA Sbjct: 121 GQIFTMHPHNNRATFQKESDNEILIKEMKLGKEVIVSAKSKRGTNTRYVYSLSGLSDALA 180 Query: 180 DIRKC 184 D+ KC Sbjct: 181 DLPKC 185 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|114705377|ref|ZP_01438285.1| hypothetical protein FP2506_10571 [Fulvimarina pelagi HTCC2506] Length = 168 | Back alignment and organism information |
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>gi|222150076|ref|YP_002551033.1| hypothetical protein Avi_4170 [Agrobacterium vitis S4] Length = 169 | Back alignment and organism information |
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>gi|241518646|ref|YP_002979274.1| hypothetical protein Rleg_5961 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 164 | Back alignment and organism information |
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>gi|15966968|ref|NP_387321.1| putative signal peptide protein [Sinorhizobium meliloti 1021] Length = 167 | Back alignment and organism information |
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>gi|222087497|ref|YP_002546034.1| hypothetical protein Arad_4379 [Agrobacterium radiobacter K84] Length = 215 | Back alignment and organism information |
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>gi|116254250|ref|YP_770088.1| hypothetical protein RL4523 [Rhizobium leguminosarum bv. viciae 3841] Length = 169 | Back alignment and organism information |
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>gi|150398263|ref|YP_001328730.1| putative signal peptide protein [Sinorhizobium medicae WSM419] Length = 167 | Back alignment and organism information |
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>gi|325294044|ref|YP_004279908.1| hypothetical protein AGROH133_08942 [Agrobacterium sp. H13-3] Length = 167 | Back alignment and organism information |
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>gi|86359511|ref|YP_471403.1| hypothetical protein RHE_CH03931 [Rhizobium etli CFN 42] Length = 169 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 185 | hypothetical protein CLIBASIA_05115 [Candidatus Liberib | ||
pfam06776 | 133 | IalB Invasion associated locus B (IalB) protein. This f | 99.86 | |
COG5342 | 181 | Invasion protein B, involved in pathogenesis [General f | 99.81 | |
pfam06674 | 338 | DUF1176 Protein of unknown function (DUF1176). This fam | 98.81 |
>pfam06776 IalB Invasion associated locus B (IalB) protein | Back alignment and domain information |
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>COG5342 Invasion protein B, involved in pathogenesis [General function prediction only] | Back alignment and domain information |
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>pfam06674 DUF1176 Protein of unknown function (DUF1176) | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 185 | hypothetical protein CLIBASIA_05115 [Candidatus Liberib | ||
3dtd_A | 175 | Crystal Structure Of Invasion Associated Protein B | 5e-05 |
>gi|198443315|pdb|3DTD|A Chain A, Crystal Structure Of Invasion Associated Protein B From Bartonella Henselae Length = 175 | Back alignment and structure |
Score = 51.5 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 11/157 (7%) Query: 28 GYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKK 87 A +L + WS+ KK+CF E +S+ Sbjct: 14 TVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQ-------EVNDQNRVVVAMSVVL 66 Query: 88 EENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEM 147 + L + + + + V L+V A +++ D + + Sbjct: 67 NADGVVSGNLTVPFGILVSKPVRLQVDEGKA-VIETGIRTCVPAGCIVPIVFDKNYVAAL 125 Query: 148 KRGKELVVSAK-SKRGT-NTRYIY-SLIGLSDSLADI 181 + GK L ++ + G ++ L G S++L + Sbjct: 126 RAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRL 162 |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 185 | hypothetical protein CLIBASIA_05115 [Candidatus Liberib | ||
3dtd_A | 175 | Invasion-associated protein B; structural genomics, PSI | 2e-16 |
>3dtd_A Invasion-associated protein B; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae} Length = 175 | Back alignment and structure |
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Score = 80.9 bits (199), Expect = 2e-16 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 16/171 (9%) Query: 21 MVSSVSAGYANASQP--EPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGV 78 S + A+ P +L + WS+ KK+CF V + R V Sbjct: 5 NSKSTTTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEVNDQN----RVVV 60 Query: 79 NFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRS 138 ++ S ++ + + + V L+V A +++ Sbjct: 61 AMSVVLNADGVVSGNLT-VPFGILVSKP--VRLQVDEGKAVIE-TGIRTCVPAGCIVPIV 116 Query: 139 QDTVLIEEMKRGKELVVS---AKSKRGTNTRYIYSLIGLS---DSLADIRK 183 D + ++ GK L ++ A L G S + L ++K Sbjct: 117 FDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIALQK 167 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 185 | hypothetical protein CLIBASIA_05115 [Candidatus Liberib | ||
3dtd_A | 175 | Invasion-associated protein B; structural genomics, PSI | 99.94 |
>3dtd_A Invasion-associated protein B; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae} | Back alignment and structure |
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Probab=99.94 E-value=9.8e-27 Score=181.75 Aligned_cols=142 Identities=16% Similarity=0.200 Sum_probs=116.6 Q ss_pred CCCHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEEC Q ss_conf 01011012377589999359871655664120002344455553057998617877610368983103467772699971 Q gi|254781121|r 35 PEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVK 114 (185) Q Consensus 35 ~~~~~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id 114 (185) ..+...++||||+++|..++++++|++.|.+...+ .+...++.+.++++++. .+.+..|+++.+.+++.+.|| T Consensus 21 ~~~~~~etfgdW~v~C~~~~~~~~C~~~q~~~~~~-----~~~~~~~~v~~~~~~~~--~~~v~vPlG~~l~~g~~i~vD 93 (175) T 3dtd_A 21 GASSLTETYGLWSINCGIQEGKKVCFMHRQEVNDQ-----NRVVVAMSVVLNADGVV--SGNLTVPFGILVSKPVRLQVD 93 (175) T ss_dssp ---CBCEEETTEEEEECCC---CCEEEEEEEEBTT-----CCEEEEEEEEECTTSCE--EEEEEECSSBCTTSCEEEEET T ss_pred CCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCC-----CCEEEEEEEEECCCCCE--EEEEEEECCCCCCCCCEEEEE T ss_conf 88001125378527971379997799998775578-----98889999997889863--799999455105999789997 Q ss_pred CCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEEC---CCCCEEEEEEECCCHHHHHHHHHHC Q ss_conf 665554443100037874102456696789997367769999991---8998899985144289999988734 Q gi|254781121|r 115 GKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKS---KRGTNTRYIYSLIGLSDSLADIRKC 184 (185) Q Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s---~~g~~~~~~~SL~GFt~A~~~~~kc 184 (185) +++. ...+.|.+|++.||++....|+++|++||+|++++|.+.. .+|+.++++|||+||++||+++++| T Consensus 94 ~g~~-~~~l~~~~C~~~gC~a~~~~~~~~i~amk~G~~~~v~~~~~~~~~~~~~~~~~SL~Gft~Al~~L~e~ 165 (175) T 3dtd_A 94 EGKA-VIETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIAL 165 (175) T ss_dssp TSSC-EEEECCCEEETTEEEEEEEECHHHHHHHHHCSEEEEEEEBSSTTCCEEEEEEEECTTHHHHHHHHHHH T ss_pred CCCC-EEEEEEEEECCCCEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 6984-05776788747852988368989999998188447999974688897788778424599999999998 |
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 185 | hypothetical protein CLIBASIA_05115 [Candidatus Li | ||
3dtd_A_ | 175 | (A:) Invasion-associated protein B; structural gen | 2e-23 |
>3dtd_A (A:) Invasion-associated protein B; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae}Length = 175 | Back alignment and structure |
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Score = 102 bits (256), Expect = 2e-23 Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 11/172 (6%) Query: 16 FLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVR 75 L ++ A +L + WS+ KK+CF V Sbjct: 2 SLSNSKSTTTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEVN-------D 54 Query: 76 HGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFE 135 +S+ + L + + + + V L+V A +++ Sbjct: 55 QNRVVVAMSVVLNADGVVSGNLTVPFGILVSKPVRLQVDEGKAVIET-GIRTCVPAGCIV 113 Query: 136 KRSQDTVLIEEMKRGKELVVS---AKSKRGTNTRYIYSLIGLSDSLADIRKC 184 D + ++ GK L ++ A L G S++L + Sbjct: 114 PIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIAL 165 |
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 185 | hypothetical protein CLIBASIA_05115 [Candidatus Liberib | ||
3dtd_A_ | 175 | Invasion-associated protein B; structural genomics | 99.96 |
>3dtd_A (A:) Invasion-associated protein B; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae} | Back alignment and structure |
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Probab=99.96 E-value=4.6e-29 Score=196.96 Aligned_cols=154 Identities=15% Similarity=0.191 Sum_probs=134.1 Q ss_pred HHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECC Q ss_conf 99986543321010110123775899993598716556641200023444555530579986178776103689831034 Q gi|254781121|r 24 SVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPL 103 (185) Q Consensus 24 ~~~~~~a~a~~~~~~~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~ 103 (185) ......+.++++++...++|+||+++|.+++++++|++.|.+. .++++.++.+.+++.++...++++..||++ T Consensus 10 ~~~~~~a~~~~~~~~~~~~f~dW~~~C~~~~~~~~C~~~q~~~-------~~~g~~~~~i~~~~~~~~~~~~~i~~P~g~ 82 (175) T 3dtd_A 10 TTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEV-------NDQNRVVVAMSVVLNADGVVSGNLTVPFGI 82 (175) T ss_dssp --------------CBCEEETTEEEEECCC---CCEEEEEEEE-------BTTCCEEEEEEEEECTTSCEEEEEEECSSB T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEE-------CCCCCEEEEEEEEECCCCCEEEEEEEECCE T ss_conf 8743113589987312435478638972379997789998760-------679966789999988998647999996760 Q ss_pred CCCCCEEEEECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEEC---CCCCEEEEEEECCCHHHHHHH Q ss_conf 67772699971665554443100037874102456696789997367769999991---899889998514428999998 Q gi|254781121|r 104 DEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKS---KRGTNTRYIYSLIGLSDSLAD 180 (185) Q Consensus 104 ~~~~~v~l~Id~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s---~~g~~~~~~~SL~GFt~A~~~ 180 (185) .+.+++.+.||++++. ...++..|.+.||++....|.++|++||+|++++|.++. .+|++++++|||+||++||++ T Consensus 83 ~l~~gv~~~vD~~~~~-~~~~~~~C~~~gC~a~~~~~~~~i~amk~G~~~~v~~~~~~~~~G~~v~~~~SL~Gf~~Al~~ 161 (175) T 3dtd_A 83 LVSKPVRLQVDEGKAV-IETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNR 161 (175) T ss_dssp CTTSCEEEEETTSSCE-EEECCCEEETTEEEEEEEECHHHHHHHHHCSEEEEEEEBSSTTCCEEEEEEEECTTHHHHHHH T ss_pred ECCCCCEEEEECCCCE-EEEEEEEECCCCEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHH T ss_conf 6499978999769740-687668873775187705898999999718844799997468888668877832269999999 Q ss_pred HHH-CC Q ss_conf 873-49 Q gi|254781121|r 181 IRK-CN 185 (185) Q Consensus 181 ~~k-c~ 185 (185) +++ |+ T Consensus 162 l~~~~~ 167 (175) T 3dtd_A 162 LIALQK 167 (175) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999876 |