HHsearch alignment for GI: 254781121 and conserved domain: COG5342

>COG5342 Invasion protein B, involved in pathogenesis [General function prediction only].
Probab=99.81  E-value=7.2e-19  Score=135.00  Aligned_cols=138  Identities=14%  Similarity=0.228  Sum_probs=114.0

Q ss_pred             HHHCCCCCEEEEEEECC-CCCEEEEEECCCCCCCCCCCCCCCEEEEE-EECCCCCCCEEEEEEEEECCCCCCCEEEEECC
Q ss_conf             11012377589999359-87165566412000234445555305799-86178776103689831034677726999716
Q gi|254781121|r   38 TLRNQFSRWSVYVYPDL-NKKLCFSLSVPVTVEPLEGVRHGVNFFII-SLKKEENSAYVSELVMDYPLDEEEMVSLEVKG  115 (185)
Q Consensus        38 ~~~~~f~dW~v~~~~~~-~~~~C~i~s~p~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~  115 (185)
T Consensus        40 ~~~~~~g~W~v~C~~~~~~~~~C~l~q~v~a------~~~~~~~l~v~i~~~~~~~~~~~~v~~P~G~llp~Gv~lqiD~  113 (181)
T COG5342          40 TLKETHGAWSVNCSKQEGDNDQCALSQNVTA------ANGQQRVLSVEIRRTADNGRKILTVLVPFGLLLPKGVSLQIDD  113 (181)
T ss_pred             CCCCCCCCEEEEECCCCCCCCHHHHHHHHHH------HCCCEEEEEEEEEEECCCCCEEEEEEECCCEECCCCCEEEECC
T ss_conf             6667888607875577788633788889987------1477389999999954778488999703320137971577579


Q ss_pred             CCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf             65554443100037874102456696789997367769999991899889998514428999998873
Q gi|254781121|r  116 KNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRK  183 (185)
Q Consensus       116 ~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~~k  183 (185)
T Consensus       114 ~k~--~~~~f~~C~p~GC~A~v~l~~~ll~~Lk~Gt~l~~~~~~~~~~~v~i~v~LkGF~~ald~l~~  179 (181)
T COG5342         114 GKI--GKLYFVTCFPDGCYAEVPLDDELLAALKSGTTLTFTSTADQEQPVPIPVSLKGFGEALDRLPE  179 (181)
T ss_pred             CCC--EEEEEEEECCCCEEEEEECCHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHCHH
T ss_conf             853--037899964786489862799999997579848998751578874047864654777610110