HHsearch alignment for GI: 254781121 and conserved domain: COG5342
>COG5342 Invasion protein B, involved in pathogenesis [General function prediction only].
Probab=99.81 E-value=7.2e-19 Score=135.00 Aligned_cols=138 Identities=14% Similarity=0.228 Sum_probs=114.0
Q ss_pred HHHCCCCCEEEEEEECC-CCCEEEEEECCCCCCCCCCCCCCCEEEEE-EECCCCCCCEEEEEEEEECCCCCCCEEEEECC
Q ss_conf 11012377589999359-87165566412000234445555305799-86178776103689831034677726999716
Q gi|254781121|r 38 TLRNQFSRWSVYVYPDL-NKKLCFSLSVPVTVEPLEGVRHGVNFFII-SLKKEENSAYVSELVMDYPLDEEEMVSLEVKG 115 (185)
Q Consensus 38 ~~~~~f~dW~v~~~~~~-~~~~C~i~s~p~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~ 115 (185)
T Consensus 40 ~~~~~~g~W~v~C~~~~~~~~~C~l~q~v~a------~~~~~~~l~v~i~~~~~~~~~~~~v~~P~G~llp~Gv~lqiD~ 113 (181)
T COG5342 40 TLKETHGAWSVNCSKQEGDNDQCALSQNVTA------ANGQQRVLSVEIRRTADNGRKILTVLVPFGLLLPKGVSLQIDD 113 (181)
T ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHH------HCCCEEEEEEEEEEECCCCCEEEEEEECCCEECCCCCEEEECC
T ss_conf 6667888607875577788633788889987------1477389999999954778488999703320137971577579
Q ss_pred CCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 65554443100037874102456696789997367769999991899889998514428999998873
Q gi|254781121|r 116 KNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRK 183 (185)
Q Consensus 116 ~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~~k 183 (185)
T Consensus 114 ~k~--~~~~f~~C~p~GC~A~v~l~~~ll~~Lk~Gt~l~~~~~~~~~~~v~i~v~LkGF~~ald~l~~ 179 (181)
T COG5342 114 GKI--GKLYFVTCFPDGCYAEVPLDDELLAALKSGTTLTFTSTADQEQPVPIPVSLKGFGEALDRLPE 179 (181)
T ss_pred CCC--EEEEEEEECCCCEEEEEECCHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHCHH
T ss_conf 853--037899964786489862799999997579848998751578874047864654777610110