Query         gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs    111 out of 516
Neff          8.5 
Searched_HMMs 33803
Date          Wed Jun  1 23:01:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781121.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3dtd_A Invasion-associated pr 100.0 4.6E-29 1.4E-33  197.0  13.8  154   24-185    10-167 (175)
  2 >2zf8_A MOTY, component of sod  80.9     3.7 0.00011   20.2   8.5   48  137-184    98-147 (154)
  3 >1xkm_A Distinctin chain A; po  26.8      27 0.00079   15.0   1.2   13  172-184     7-19  (26)
  4 >1kmo_A FECA, iron(III) dicitr  25.0      18 0.00052   16.1   0.0   12    3-14      1-12  (774)
  5 >1y0g_A Protein YCEI; lipid bi  23.0      42  0.0013   13.7   1.6   17   39-55     48-64  (191)
  6 >1w7f_A Beta-lactamase; hydrol  21.7      48  0.0014   13.4   2.6   21   41-61     56-76  (307)
  7 >1jpe_A DSBD-alpha; redox-acti  21.4      43  0.0013   13.7   1.4   16  122-137   116-132 (151)
  8 >2vzs_A CSXA, EXO-beta-D-gluco  20.8      33 0.00099   14.4   0.7   50  106-163   144-194 (225)
  9 >3dw0_A Class A carbapenemase   20.0      52  0.0015   13.2   1.8   20   41-60     39-58  (294)
 10 >2jen_A Xyloglucanase, endo-be  15.4      36  0.0011   14.2  -0.1   39    6-44      1-39  (261)

No 1  
>>3dtd_A Invasion-associated protein B; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae} (A:)
Probab=99.96  E-value=4.6e-29  Score=196.96  Aligned_cols=154  Identities=15%  Similarity=0.191  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECC
Q ss_conf             99986543321010110123775899993598716556641200023444555530579986178776103689831034
Q gi|254781121|r   24 SVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPL  103 (185)
Q Consensus        24 ~~~~~~a~a~~~~~~~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~  103 (185)
                      ......+.++++++...++|+||+++|.+++++++|++.|.+.       .++++.++.+.+++.++...++++..||++
T Consensus        10 ~~~~~~a~~~~~~~~~~~~f~dW~~~C~~~~~~~~C~~~q~~~-------~~~g~~~~~i~~~~~~~~~~~~~i~~P~g~   82 (175)
T 3dtd_A           10 TTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEV-------NDQNRVVVAMSVVLNADGVVSGNLTVPFGI   82 (175)
T ss_dssp             --------------CBCEEETTEEEEECCC---CCEEEEEEEE-------BTTCCEEEEEEEEECTTSCEEEEEEECSSB
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEE-------CCCCCEEEEEEEEECCCCCEEEEEEEECCE
T ss_conf             8743113589987312435478638972379997789998760-------679966789999988998647999996760


Q ss_pred             CCCCCEEEEECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEEC---CCCCEEEEEEECCCHHHHHHH
Q ss_conf             67772699971665554443100037874102456696789997367769999991---899889998514428999998
Q gi|254781121|r  104 DEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKS---KRGTNTRYIYSLIGLSDSLAD  180 (185)
Q Consensus       104 ~~~~~v~l~Id~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s---~~g~~~~~~~SL~GFt~A~~~  180 (185)
                      .+.+++.+.||++++. ...++..|.+.||++....|.++|++||+|++++|.++.   .+|++++++|||+||++||++
T Consensus        83 ~l~~gv~~~vD~~~~~-~~~~~~~C~~~gC~a~~~~~~~~i~amk~G~~~~v~~~~~~~~~G~~v~~~~SL~Gf~~Al~~  161 (175)
T 3dtd_A           83 LVSKPVRLQVDEGKAV-IETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNR  161 (175)
T ss_dssp             CTTSCEEEEETTSSCE-EEECCCEEETTEEEEEEEECHHHHHHHHHCSEEEEEEEBSSTTCCEEEEEEEECTTHHHHHHH
T ss_pred             ECCCCCEEEEECCCCE-EEEEEEEECCCCEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHH
T ss_conf             6499978999769740-687668873775187705898999999718844799997468888668877832269999999


Q ss_pred             HHH-CC
Q ss_conf             873-49
Q gi|254781121|r  181 IRK-CN  185 (185)
Q Consensus       181 ~~k-c~  185 (185)
                      +++ |+
T Consensus       162 l~~~~~  167 (175)
T 3dtd_A          162 LIALQK  167 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999876


No 2  
>>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} (A:1-154)
Probab=80.91  E-value=3.7  Score=20.24  Aligned_cols=48  Identities=13%  Similarity=0.207  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHCCCEEEEEEECC--CCCEEEEEEECCCHHHHHHHHHHC
Q ss_conf             566967899973677699999918--998899985144289999988734
Q gi|254781121|r  137 RSQDTVLIEEMKRGKELVVSAKSK--RGTNTRYIYSLIGLSDSLADIRKC  184 (185)
Q Consensus       137 ~~~d~~~i~amk~G~~~~v~~~s~--~g~~~~~~~SL~GFt~A~~~~~kc  184 (185)
                      ......++++|.+|...++...+.  ++..+....|=..|.+||+.-+.|
T Consensus        98 ~~~a~~lL~~L~~G~~pt~~~~~~~~~~~~i~V~Ls~VnF~~ay~~F~~C  147 (154)
T 2zf8_A           98 GQTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNAFSDC  147 (154)
T ss_dssp             SHHHHHHHHHHHHTCCCEEEBCCSSSSCCEEEEBCCCSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             54589999999779965887643346787469970653414566789999


No 3  
>>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} (A:)
Probab=26.84  E-value=27  Score=14.97  Aligned_cols=13  Identities=31%  Similarity=0.761  Sum_probs=11.0

Q ss_pred             CCHHHHHHHHHHC
Q ss_conf             4289999988734
Q gi|254781121|r  172 IGLSDSLADIRKC  184 (185)
Q Consensus       172 ~GFt~A~~~~~kc  184 (185)
                      -|||+-++.++||
T Consensus         7 pgftaliktlrkc   19 (26)
T 1xkm_A            7 PGFTALIKTLRKC   19 (26)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHC
T ss_conf             7689999998746


No 4  
>>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:)
Probab=25.00  E-value=18  Score=16.06  Aligned_cols=12  Identities=17%  Similarity=0.132  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             137799899999
Q gi|254781121|r    3 LNVLKDFFVPRI   14 (185)
Q Consensus         3 ~~~~~~~~m~~~   14 (185)
                      |+.+.+|+..+.
T Consensus         1 M~~~~~~~~~~~   12 (774)
T 1kmo_A            1 MTPLRVFRKTTP   12 (774)
T ss_dssp             ------------
T ss_pred             CCCCHHHHHHHH
T ss_conf             984233321448


No 5  
>>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} (A:)
Probab=23.01  E-value=42  Score=13.73  Aligned_cols=17  Identities=18%  Similarity=0.108  Sum_probs=10.1

Q ss_pred             HHCCCCCEEEEEEECCC
Q ss_conf             10123775899993598
Q gi|254781121|r   39 LRNQFSRWSVYVYPDLN   55 (185)
Q Consensus        39 ~~~~f~dW~v~~~~~~~   55 (185)
                      ..++|.+|+.....++.
T Consensus        48 v~G~f~~~~g~v~~~~~   64 (191)
T 1y0g_A           48 LYGTFKDFDGTFTFDEK   64 (191)
T ss_dssp             EEEEECCEEEEEECCSS
T ss_pred             EEEEEEEEEEEEEECCC
T ss_conf             99998258999998577


No 6  
>>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} (A:)
Probab=21.67  E-value=48  Score=13.39  Aligned_cols=21  Identities=0%  Similarity=-0.015  Sum_probs=13.3

Q ss_pred             CCCCCEEEEEEECCCCCEEEE
Q ss_conf             123775899993598716556
Q gi|254781121|r   41 NQFSRWSVYVYPDLNKKLCFS   61 (185)
Q Consensus        41 ~~f~dW~v~~~~~~~~~~C~i   61 (185)
                      ..-++|+++...-+++++...
T Consensus        56 ~~~~~~s~~v~Dl~tg~~~~~   76 (307)
T 1w7f_A           56 QFDAKLGIFALDTGTNRTVTY   76 (307)
T ss_dssp             HHTCEEEEEEEETTTCCEEEE
T ss_pred             HCCCEEEEEEEECCCCCEEEE
T ss_conf             709859999998999988777


No 7  
>>1jpe_A DSBD-alpha; redox-active center, electron transport, inner membrane, disulfide bond formation; 1.90A {Escherichia coli} (A:)
Probab=21.40  E-value=43  Score=13.70  Aligned_cols=16  Identities=0%  Similarity=0.158  Sum_probs=10.7

Q ss_pred             CCCEECCCCCC-EECCC
Q ss_conf             43100037874-10245
Q gi|254781121|r  122 IFKMKSYNNRA-AFEKR  137 (185)
Q Consensus       122 ~~~~~~~~~~a-~~~~~  137 (185)
                      ...+-.|.+.| |....
T Consensus       116 ~v~yQgCsd~g~CypP~  132 (151)
T 1jpe_A          116 TVTYQGCADAGFCYPPE  132 (151)
T ss_dssp             EEEECEEETTTEECCCE
T ss_pred             EEEEECCCCCCEECCCE
T ss_conf             99996736898733886


No 8  
>>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} (A:1-225)
Probab=20.84  E-value=33  Score=14.37  Aligned_cols=50  Identities=10%  Similarity=0.170  Sum_probs=23.2

Q ss_pred             CCCEEEEECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCC-EEEEEEECCCCC
Q ss_conf             7726999716655544431000378741024566967899973677-699999918998
Q gi|254781121|r  106 EEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGK-ELVVSAKSKRGT  163 (185)
Q Consensus       106 ~~~v~l~Id~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~-~~~v~~~s~~g~  163 (185)
                      .....+-|+++..+..      ....++...  .+-++-..+|.|. .+.|...+..+.
T Consensus       144 ~~~a~v~iNG~~vg~~------~~~~g~~~p--~~~dit~~Lk~G~N~i~V~V~~~~~~  194 (225)
T 2vzs_A          144 LSKADVWVNGTKVATK------DQVNGAYTR--HDLDITAQVHTGVNSVAFKVYPNDPN  194 (225)
T ss_dssp             ESBEEEEETTEEEECT------TTSBSTTCC--EEEECTTTCCSEEEEEEEEECCCCTT
T ss_pred             CCEEEEEECCEEEEEE------CCCCCCCCC--EEEECHHHCCCCCCEEEEEEECCCCC
T ss_conf             9388999999994365------488898556--89988688289962899999789996


No 9  
>>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} (A:)
Probab=20.05  E-value=52  Score=13.18  Aligned_cols=20  Identities=10%  Similarity=-0.089  Sum_probs=13.9

Q ss_pred             CCCCCEEEEEEECCCCCEEE
Q ss_conf             12377589999359871655
Q gi|254781121|r   41 NQFSRWSVYVYPDLNKKLCF   60 (185)
Q Consensus        41 ~~f~dW~v~~~~~~~~~~C~   60 (185)
                      ..-++|+++...-+++++..
T Consensus        39 ~~~~~~s~~~~d~~tg~~~~   58 (294)
T 3dw0_A           39 DFGGSIGVYAMDTGSGATVS   58 (294)
T ss_dssp             HHTSEEEEEEEETTTCCEEE
T ss_pred             HCCCEEEEEEEECCCCCEEE
T ss_conf             62985999999999998856


No 10 
>>2jen_A Xyloglucanase, endo-beta-1,4-glucanase; plant cell WALL, glycosidase, hydrolase, family 12; HET: GLC BGC DIO; 1.4A {Bacillus licheniformis} PDB: 2jem_A (A:)
Probab=15.43  E-value=36  Score=14.19  Aligned_cols=39  Identities=15%  Similarity=0.019  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
Q ss_conf             799899999999999999999865433210101101237
Q gi|254781121|r    6 LKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFS   44 (185)
Q Consensus         6 ~~~~~m~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~f~   44 (185)
                      |++-.|+++..++++++++.....+.+++++...-++++
T Consensus         1 m~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   39 (261)
T 2jen_A            1 MKNNHLLKSILLWGAVCIIVLAGPLSAFAASSSNPSDKL   39 (261)
T ss_dssp             ----------------------------CEEECSTTCEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEE
T ss_conf             963067899999999999986153321234424855267


Done!