Query gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 185 No_of_seqs 111 out of 516 Neff 8.5 Searched_HMMs 33803 Date Wed Jun 1 23:01:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781121.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3dtd_A Invasion-associated pr 100.0 4.6E-29 1.4E-33 197.0 13.8 154 24-185 10-167 (175) 2 >2zf8_A MOTY, component of sod 80.9 3.7 0.00011 20.2 8.5 48 137-184 98-147 (154) 3 >1xkm_A Distinctin chain A; po 26.8 27 0.00079 15.0 1.2 13 172-184 7-19 (26) 4 >1kmo_A FECA, iron(III) dicitr 25.0 18 0.00052 16.1 0.0 12 3-14 1-12 (774) 5 >1y0g_A Protein YCEI; lipid bi 23.0 42 0.0013 13.7 1.6 17 39-55 48-64 (191) 6 >1w7f_A Beta-lactamase; hydrol 21.7 48 0.0014 13.4 2.6 21 41-61 56-76 (307) 7 >1jpe_A DSBD-alpha; redox-acti 21.4 43 0.0013 13.7 1.4 16 122-137 116-132 (151) 8 >2vzs_A CSXA, EXO-beta-D-gluco 20.8 33 0.00099 14.4 0.7 50 106-163 144-194 (225) 9 >3dw0_A Class A carbapenemase 20.0 52 0.0015 13.2 1.8 20 41-60 39-58 (294) 10 >2jen_A Xyloglucanase, endo-be 15.4 36 0.0011 14.2 -0.1 39 6-44 1-39 (261) No 1 >>3dtd_A Invasion-associated protein B; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae} (A:) Probab=99.96 E-value=4.6e-29 Score=196.96 Aligned_cols=154 Identities=15% Similarity=0.191 Sum_probs=134.1 Q ss_pred HHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECC Q ss_conf 99986543321010110123775899993598716556641200023444555530579986178776103689831034 Q gi|254781121|r 24 SVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPL 103 (185) Q Consensus 24 ~~~~~~a~a~~~~~~~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~ 103 (185) ......+.++++++...++|+||+++|.+++++++|++.|.+. .++++.++.+.+++.++...++++..||++ T Consensus 10 ~~~~~~a~~~~~~~~~~~~f~dW~~~C~~~~~~~~C~~~q~~~-------~~~g~~~~~i~~~~~~~~~~~~~i~~P~g~ 82 (175) T 3dtd_A 10 TTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEV-------NDQNRVVVAMSVVLNADGVVSGNLTVPFGI 82 (175) T ss_dssp --------------CBCEEETTEEEEECCC---CCEEEEEEEE-------BTTCCEEEEEEEEECTTSCEEEEEEECSSB T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEE-------CCCCCEEEEEEEEECCCCCEEEEEEEECCE T ss_conf 8743113589987312435478638972379997789998760-------679966789999988998647999996760 Q ss_pred CCCCCEEEEECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEEC---CCCCEEEEEEECCCHHHHHHH Q ss_conf 67772699971665554443100037874102456696789997367769999991---899889998514428999998 Q gi|254781121|r 104 DEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKS---KRGTNTRYIYSLIGLSDSLAD 180 (185) Q Consensus 104 ~~~~~v~l~Id~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s---~~g~~~~~~~SL~GFt~A~~~ 180 (185) .+.+++.+.||++++. ...++..|.+.||++....|.++|++||+|++++|.++. .+|++++++|||+||++||++ T Consensus 83 ~l~~gv~~~vD~~~~~-~~~~~~~C~~~gC~a~~~~~~~~i~amk~G~~~~v~~~~~~~~~G~~v~~~~SL~Gf~~Al~~ 161 (175) T 3dtd_A 83 LVSKPVRLQVDEGKAV-IETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNR 161 (175) T ss_dssp CTTSCEEEEETTSSCE-EEECCCEEETTEEEEEEEECHHHHHHHHHCSEEEEEEEBSSTTCCEEEEEEEECTTHHHHHHH T ss_pred ECCCCCEEEEECCCCE-EEEEEEEECCCCEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHH T ss_conf 6499978999769740-687668873775187705898999999718844799997468888668877832269999999 Q ss_pred HHH-CC Q ss_conf 873-49 Q gi|254781121|r 181 IRK-CN 185 (185) Q Consensus 181 ~~k-c~ 185 (185) +++ |+ T Consensus 162 l~~~~~ 167 (175) T 3dtd_A 162 LIALQK 167 (175) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999876 No 2 >>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} (A:1-154) Probab=80.91 E-value=3.7 Score=20.24 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=41.7 Q ss_pred CCCCHHHHHHHHCCCEEEEEEECC--CCCEEEEEEECCCHHHHHHHHHHC Q ss_conf 566967899973677699999918--998899985144289999988734 Q gi|254781121|r 137 RSQDTVLIEEMKRGKELVVSAKSK--RGTNTRYIYSLIGLSDSLADIRKC 184 (185) Q Consensus 137 ~~~d~~~i~amk~G~~~~v~~~s~--~g~~~~~~~SL~GFt~A~~~~~kc 184 (185) ......++++|.+|...++...+. ++..+....|=..|.+||+.-+.| T Consensus 98 ~~~a~~lL~~L~~G~~pt~~~~~~~~~~~~i~V~Ls~VnF~~ay~~F~~C 147 (154) T 2zf8_A 98 GQTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNAFSDC 147 (154) T ss_dssp SHHHHHHHHHHHHTCCCEEEBCCSSSSCCEEEEBCCCSSHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 54589999999779965887643346787469970653414566789999 No 3 >>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} (A:) Probab=26.84 E-value=27 Score=14.97 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=11.0 Q ss_pred CCHHHHHHHHHHC Q ss_conf 4289999988734 Q gi|254781121|r 172 IGLSDSLADIRKC 184 (185) Q Consensus 172 ~GFt~A~~~~~kc 184 (185) -|||+-++.++|| T Consensus 7 pgftaliktlrkc 19 (26) T 1xkm_A 7 PGFTALIKTLRKC 19 (26) T ss_dssp HHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHC T ss_conf 7689999998746 No 4 >>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:) Probab=25.00 E-value=18 Score=16.06 Aligned_cols=12 Identities=17% Similarity=0.132 Sum_probs=4.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 137799899999 Q gi|254781121|r 3 LNVLKDFFVPRI 14 (185) Q Consensus 3 ~~~~~~~~m~~~ 14 (185) |+.+.+|+..+. T Consensus 1 M~~~~~~~~~~~ 12 (774) T 1kmo_A 1 MTPLRVFRKTTP 12 (774) T ss_dssp ------------ T ss_pred CCCCHHHHHHHH T ss_conf 984233321448 No 5 >>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} (A:) Probab=23.01 E-value=42 Score=13.73 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=10.1 Q ss_pred HHCCCCCEEEEEEECCC Q ss_conf 10123775899993598 Q gi|254781121|r 39 LRNQFSRWSVYVYPDLN 55 (185) Q Consensus 39 ~~~~f~dW~v~~~~~~~ 55 (185) ..++|.+|+.....++. T Consensus 48 v~G~f~~~~g~v~~~~~ 64 (191) T 1y0g_A 48 LYGTFKDFDGTFTFDEK 64 (191) T ss_dssp EEEEECCEEEEEECCSS T ss_pred EEEEEEEEEEEEEECCC T ss_conf 99998258999998577 No 6 >>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} (A:) Probab=21.67 E-value=48 Score=13.39 Aligned_cols=21 Identities=0% Similarity=-0.015 Sum_probs=13.3 Q ss_pred CCCCCEEEEEEECCCCCEEEE Q ss_conf 123775899993598716556 Q gi|254781121|r 41 NQFSRWSVYVYPDLNKKLCFS 61 (185) Q Consensus 41 ~~f~dW~v~~~~~~~~~~C~i 61 (185) ..-++|+++...-+++++... T Consensus 56 ~~~~~~s~~v~Dl~tg~~~~~ 76 (307) T 1w7f_A 56 QFDAKLGIFALDTGTNRTVTY 76 (307) T ss_dssp HHTCEEEEEEEETTTCCEEEE T ss_pred HCCCEEEEEEEECCCCCEEEE T ss_conf 709859999998999988777 No 7 >>1jpe_A DSBD-alpha; redox-active center, electron transport, inner membrane, disulfide bond formation; 1.90A {Escherichia coli} (A:) Probab=21.40 E-value=43 Score=13.70 Aligned_cols=16 Identities=0% Similarity=0.158 Sum_probs=10.7 Q ss_pred CCCEECCCCCC-EECCC Q ss_conf 43100037874-10245 Q gi|254781121|r 122 IFKMKSYNNRA-AFEKR 137 (185) Q Consensus 122 ~~~~~~~~~~a-~~~~~ 137 (185) ...+-.|.+.| |.... T Consensus 116 ~v~yQgCsd~g~CypP~ 132 (151) T 1jpe_A 116 TVTYQGCADAGFCYPPE 132 (151) T ss_dssp EEEECEEETTTEECCCE T ss_pred EEEEECCCCCCEECCCE T ss_conf 99996736898733886 No 8 >>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} (A:1-225) Probab=20.84 E-value=33 Score=14.37 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=23.2 Q ss_pred CCCEEEEECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCC-EEEEEEECCCCC Q ss_conf 7726999716655544431000378741024566967899973677-699999918998 Q gi|254781121|r 106 EEMVSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGK-ELVVSAKSKRGT 163 (185) Q Consensus 106 ~~~v~l~Id~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~-~~~v~~~s~~g~ 163 (185) .....+-|+++..+.. ....++... .+-++-..+|.|. .+.|...+..+. T Consensus 144 ~~~a~v~iNG~~vg~~------~~~~g~~~p--~~~dit~~Lk~G~N~i~V~V~~~~~~ 194 (225) T 2vzs_A 144 LSKADVWVNGTKVATK------DQVNGAYTR--HDLDITAQVHTGVNSVAFKVYPNDPN 194 (225) T ss_dssp ESBEEEEETTEEEECT------TTSBSTTCC--EEEECTTTCCSEEEEEEEEECCCCTT T ss_pred CCEEEEEECCEEEEEE------CCCCCCCCC--EEEECHHHCCCCCCEEEEEEECCCCC T ss_conf 9388999999994365------488898556--89988688289962899999789996 No 9 >>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} (A:) Probab=20.05 E-value=52 Score=13.18 Aligned_cols=20 Identities=10% Similarity=-0.089 Sum_probs=13.9 Q ss_pred CCCCCEEEEEEECCCCCEEE Q ss_conf 12377589999359871655 Q gi|254781121|r 41 NQFSRWSVYVYPDLNKKLCF 60 (185) Q Consensus 41 ~~f~dW~v~~~~~~~~~~C~ 60 (185) ..-++|+++...-+++++.. T Consensus 39 ~~~~~~s~~~~d~~tg~~~~ 58 (294) T 3dw0_A 39 DFGGSIGVYAMDTGSGATVS 58 (294) T ss_dssp HHTSEEEEEEEETTTCCEEE T ss_pred HCCCEEEEEEEECCCCCEEE T ss_conf 62985999999999998856 No 10 >>2jen_A Xyloglucanase, endo-beta-1,4-glucanase; plant cell WALL, glycosidase, hydrolase, family 12; HET: GLC BGC DIO; 1.4A {Bacillus licheniformis} PDB: 2jem_A (A:) Probab=15.43 E-value=36 Score=14.19 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC Q ss_conf 799899999999999999999865433210101101237 Q gi|254781121|r 6 LKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFS 44 (185) Q Consensus 6 ~~~~~m~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~f~ 44 (185) |++-.|+++..++++++++.....+.+++++...-++++ T Consensus 1 m~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 39 (261) T 2jen_A 1 MKNNHLLKSILLWGAVCIIVLAGPLSAFAASSSNPSDKL 39 (261) T ss_dssp ----------------------------CEEECSTTCEE T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEE T ss_conf 963067899999999999986153321234424855267 Done!