Query         gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs    111 out of 516
Neff          8.5 
Searched_HMMs 23785
Date          Wed Jun  1 01:32:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781121.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3dtd_A Invasion-associated pro  99.9 9.8E-27 4.1E-31  181.8  13.3  142   35-184    21-165 (175)
  2 2zf8_A MOTY, component of sodi  47.0      13 0.00053   16.0   9.4   47  138-184    99-147 (278)
  3 3if8_A Hzwilch, protein zwilch  31.6      22 0.00094   14.5   2.8   38   45-86    141-178 (339)
  4 1xkm_A Distinctin chain A; por  26.8      19 0.00079   15.0   1.2   13  172-184     7-19  (26)
  5 2w5v_A Alkaline phosphatase; p  19.9      18 0.00075   15.1  -0.0   17    9-25      1-17  (375)
  6 2kqv_A Non-structural protein   12.1      38  0.0016   13.1   0.0   13  139-151   156-168 (198)
  7 1txj_A Translationally control  10.2      62  0.0026   11.8   0.6   17   36-52    121-137 (171)
  8 2dck_A Xylanase J; family 11,    9.0      76  0.0032   11.3   2.7   28   34-61     28-55  (354)
  9 1y0g_A Protein YCEI; lipid bin   9.0      63  0.0026   11.7   0.2   38   11-48      1-40  (191)
 10 2qgu_A Probable signal peptide   8.0      67  0.0028   11.6   0.0   28    9-36      1-28  (211)

No 1  
>3dtd_A Invasion-associated protein B; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae}
Probab=99.94  E-value=9.8e-27  Score=181.75  Aligned_cols=142  Identities=16%  Similarity=0.200  Sum_probs=116.6

Q ss_pred             CCCHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEEC
Q ss_conf             01011012377589999359871655664120002344455553057998617877610368983103467772699971
Q gi|254781121|r   35 PEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVK  114 (185)
Q Consensus        35 ~~~~~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id  114 (185)
                      ..+...++||||+++|..++++++|++.|.+...+     .+...++.+.++++++.  .+.+..|+++.+.+++.+.||
T Consensus        21 ~~~~~~etfgdW~v~C~~~~~~~~C~~~q~~~~~~-----~~~~~~~~v~~~~~~~~--~~~v~vPlG~~l~~g~~i~vD   93 (175)
T 3dtd_A           21 GASSLTETYGLWSINCGIQEGKKVCFMHRQEVNDQ-----NRVVVAMSVVLNADGVV--SGNLTVPFGILVSKPVRLQVD   93 (175)
T ss_dssp             ---CBCEEETTEEEEECCC---CCEEEEEEEEBTT-----CCEEEEEEEEECTTSCE--EEEEEECSSBCTTSCEEEEET
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCC-----CCEEEEEEEEECCCCCE--EEEEEEECCCCCCCCCEEEEE
T ss_conf             88001125378527971379997799998775578-----98889999997889863--799999455105999789997


Q ss_pred             CCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEEC---CCCCEEEEEEECCCHHHHHHHHHHC
Q ss_conf             665554443100037874102456696789997367769999991---8998899985144289999988734
Q gi|254781121|r  115 GKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKS---KRGTNTRYIYSLIGLSDSLADIRKC  184 (185)
Q Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s---~~g~~~~~~~SL~GFt~A~~~~~kc  184 (185)
                      +++. ...+.|.+|++.||++....|+++|++||+|++++|.+..   .+|+.++++|||+||++||+++++|
T Consensus        94 ~g~~-~~~l~~~~C~~~gC~a~~~~~~~~i~amk~G~~~~v~~~~~~~~~~~~~~~~~SL~Gft~Al~~L~e~  165 (175)
T 3dtd_A           94 EGKA-VIETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIAL  165 (175)
T ss_dssp             TSSC-EEEECCCEEETTEEEEEEEECHHHHHHHHHCSEEEEEEEBSSTTCCEEEEEEEECTTHHHHHHHHHHH
T ss_pred             CCCC-EEEEEEEEECCCCEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             6984-05776788747852988368989999998188447999974688897788778424599999999998


No 2  
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=46.98  E-value=13  Score=16.00  Aligned_cols=47  Identities=13%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             CCCHHHHHHHHCCCEEEEEEEC--CCCCEEEEEEECCCHHHHHHHHHHC
Q ss_conf             6696789997367769999991--8998899985144289999988734
Q gi|254781121|r  138 SQDTVLIEEMKRGKELVVSAKS--KRGTNTRYIYSLIGLSDSLADIRKC  184 (185)
Q Consensus       138 ~~d~~~i~amk~G~~~~v~~~s--~~g~~~~~~~SL~GFt~A~~~~~kc  184 (185)
                      .....++.+|-+|...++...+  .++..+....|-..|.++|+..+.|
T Consensus        99 ~~a~~ll~~L~~G~~~t~~~~~~~~~~~~v~v~ls~v~f~~~y~~f~~C  147 (278)
T 2zf8_A           99 QTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNAFSDC  147 (278)
T ss_dssp             HHHHHHHHHHHHTCCCEEEBCCSSSSCCEEEEBCCCSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             4489999999789901672304457786179973730057777889999


No 3  
>3if8_A Hzwilch, protein zwilch homolog; incomplete beta-barrel, alternative splicing, cell cycle, CE division, kinetochore, mitosis, polymorphism; 2.55A {Homo sapiens}
Probab=31.60  E-value=22  Score=14.51  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=27.5

Q ss_pred             CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             758999935987165566412000234445555305799861
Q gi|254781121|r   45 RWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLK   86 (185)
Q Consensus        45 dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~   86 (185)
                      =| |.|-..+..-+||+.+.|+++.   +.-.|..++.|+-.
T Consensus       141 LW-vrCD~sDpe~tcWlGaE~~~t~---n~itGi~~~~VtC~  178 (339)
T 3if8_A          141 LW-VRCDSSDPEGTCWLGAELITTN---NSITGIVLYVVSCK  178 (339)
T ss_dssp             EE-EEBCCCSTTCEEEEEEEEEEET---TEEEEEEEEEEEEE
T ss_pred             EE-EECCCCCCCCCEEECCEEEECC---CCCEEEEEEEEEEC
T ss_conf             27-7637889763124321466527---86103799999964


No 4  
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=26.78  E-value=19  Score=14.96  Aligned_cols=13  Identities=31%  Similarity=0.761  Sum_probs=11.3

Q ss_pred             CCHHHHHHHHHHC
Q ss_conf             4289999988734
Q gi|254781121|r  172 IGLSDSLADIRKC  184 (185)
Q Consensus       172 ~GFt~A~~~~~kc  184 (185)
                      -|||+-++.++||
T Consensus         7 pgftaliktlrkc   19 (26)
T 1xkm_A            7 PGFTALIKTLRKC   19 (26)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHC
T ss_conf             7689999998746


No 5  
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B
Probab=19.92  E-value=18  Score=15.11  Aligned_cols=17  Identities=12%  Similarity=0.163  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999
Q gi|254781121|r    9 FFVPRIRFLIVLMVSSV   25 (185)
Q Consensus         9 ~~m~~~~~~~~~~~~~~   25 (185)
                      |.|+++.+++++++++.
T Consensus         1 m~~~~~~~~l~~l~~~~   17 (375)
T 2w5v_A            1 MKLKKIVFTLIALGLFS   17 (375)
T ss_dssp             -----------------
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             96159999999999999


No 6  
>2kqv_A Non-structural protein 3; severe acute respiratory syndrome (SARS), macrodomains, RNA-binding proteins, structural genomics, PSI-2, JCSG; NMR {Sars coronavirus} PDB: 2kqw_A
Probab=12.15  E-value=38  Score=13.10  Aligned_cols=13  Identities=31%  Similarity=0.498  Sum_probs=4.6

Q ss_pred             CCHHHHHHHHCCC
Q ss_conf             6967899973677
Q gi|254781121|r  139 QDTVLIEEMKRGK  151 (185)
Q Consensus       139 ~d~~~i~amk~G~  151 (185)
                      ....-+.-.|+|.
T Consensus       156 ~t~~~V~~~KrGd  168 (198)
T 2kqv_A          156 RTELGVEFLKRGD  168 (198)
T ss_dssp             -------------
T ss_pred             EEEEEEEEEECCC
T ss_conf             5898878984598


No 7  
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2
Probab=10.19  E-value=62  Score=11.77  Aligned_cols=17  Identities=12%  Similarity=0.280  Sum_probs=13.0

Q ss_pred             CCHHHCCCCCEEEEEEE
Q ss_conf             10110123775899993
Q gi|254781121|r   36 EPTLRNQFSRWSVYVYP   52 (185)
Q Consensus        36 ~~~~~~~f~dW~v~~~~   52 (185)
                      -...+++|+||+.|+.+
T Consensus       121 vK~il~~Fkd~qFf~GE  137 (171)
T 1txj_A          121 IKHILTNFDDFEFYMGE  137 (171)
T ss_dssp             HHHHHHTGGGCEEEECT
T ss_pred             HHHHHHHCCCCEEECCC
T ss_conf             99998657564385258


No 8  
>2dck_A Xylanase J; family 11, xylan binding domain (XBM), beta-jelly roll, alkaliphilic xylanase, hydrolase; 2.10A {Bacillus SP} PDB: 2dcj_A
Probab=9.01  E-value=76  Score=11.26  Aligned_cols=28  Identities=4%  Similarity=-0.024  Sum_probs=14.8

Q ss_pred             HCCCHHHCCCCCEEEEEEECCCCCEEEE
Q ss_conf             1010110123775899993598716556
Q gi|254781121|r   34 QPEPTLRNQFSRWSVYVYPDLNKKLCFS   61 (185)
Q Consensus        34 ~~~~~~~~~f~dW~v~~~~~~~~~~C~i   61 (185)
                      +..+...+++..+...-..+.++..|+-
T Consensus        28 ~~t~n~~g~~~gy~y~~W~d~~g~~~~t   55 (354)
T 2dck_A           28 AITSNEIGTHDGYDYEFWKDSGGSGSMT   55 (354)
T ss_dssp             CBCSCEEEEETTEEEEEEECSSSEEEEE
T ss_pred             CCCCCCCEEECCEEEEEEECCCCCEEEE
T ss_conf             0056761526898999995699847999


No 9  
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=9.01  E-value=63  Score=11.74  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC--CCCCEEE
Q ss_conf             9999999999999999865433210101101--2377589
Q gi|254781121|r   11 VPRIRFLIVLMVSSVSAGYANASQPEPTLRN--QFSRWSV   48 (185)
Q Consensus        11 m~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~--~f~dW~v   48 (185)
                      |+++.+.+.++.+++....+.++........  +.=.|.+
T Consensus         1 Mkk~~~~l~~~~l~~~~~~a~a~~~~id~~~~hS~v~F~~   40 (191)
T 1y0g_A            1 MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRI   40 (191)
T ss_dssp             ----------------------CEEEECTTTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEE
T ss_conf             9336999999999976022036537976888648999999


No 10 
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum GMI1000}
Probab=7.97  E-value=67  Score=11.58  Aligned_cols=28  Identities=14%  Similarity=0.129  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8999999999999999998654332101
Q gi|254781121|r    9 FFVPRIRFLIVLMVSSVSAGYANASQPE   36 (185)
Q Consensus         9 ~~m~~~~~~~~~~~~~~~~~~a~a~~~~   36 (185)
                      |+++.++.+++.++++......++.+++
T Consensus         1 M~k~~~~~l~~~l~~~~~~~~~~a~a~~   28 (211)
T 2qgu_A            1 MFKKLLHSLVAGLTFVAAVAAVPAHAQE   28 (211)
T ss_dssp             ----------------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9489999999999999998456533231


Done!