Query gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 185 No_of_seqs 111 out of 516 Neff 8.5 Searched_HMMs 13730 Date Wed Jun 1 11:30:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781121.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1txja_ b.88.1.2 (A:) Translat 14.3 22 0.0016 13.0 0.6 21 33-53 118-138 (171) 2 d2g3qa1 a.5.2.1 (A:1339-1381) 13.2 23 0.0016 13.0 0.3 14 172-185 14-29 (43) 3 d2rdea2 b.45.2.2 (A:24-137) Hy 11.8 35 0.0025 11.9 2.7 20 144-163 59-78 (114) 4 d1yz1a1 b.88.1.2 (A:1-172) Tra 11.5 35 0.0026 11.8 0.9 17 37-53 123-139 (172) 5 d1pjca1 c.2.1.4 (A:136-303) L- 9.7 28 0.002 12.5 -0.2 28 136-163 111-138 (168) 6 d1h6qa_ b.88.1.2 (A:) Translat 9.3 32 0.0023 12.1 0.1 20 34-53 116-135 (168) 7 d1qfha2 b.1.18.10 (A:750-857) 8.5 46 0.0033 11.1 5.6 38 78-115 53-90 (108) 8 d1l7da1 c.2.1.4 (A:144-326) Ni 8.3 47 0.0034 11.1 1.1 26 137-162 131-156 (183) 9 d2b82a1 c.108.1.12 (A:4-212) C 5.9 62 0.0045 10.3 0.5 79 74-155 99-181 (209) 10 d2aaaa1 b.71.1.1 (A:382-476) F 5.8 43 0.0031 11.3 -0.7 30 77-107 21-51 (95) No 1 >d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Plasmodium knowlesi [TaxId: 5850]} Probab=14.28 E-value=22 Score=13.03 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=14.3 Q ss_pred HHCCCHHHCCCCCEEEEEEEC Q ss_conf 210101101237758999935 Q gi|254781121|r 33 SQPEPTLRNQFSRWSVYVYPD 53 (185) Q Consensus 33 ~~~~~~~~~~f~dW~v~~~~~ 53 (185) ++.-...+++|+||+.|+.+. T Consensus 118 ~~~vK~Il~nFkd~qFf~GES 138 (171) T d1txja_ 118 QPLIKHILTNFDDFEFYMGES 138 (171) T ss_dssp HHHHHHHHHTGGGCEEEECTT T ss_pred HHHHHHHHHHCCCCEEECCCC T ss_conf 999999985076544852588 No 2 >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Probab=13.22 E-value=23 Score=13.01 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=7.0 Q ss_pred CCHHH--HHHHHHHCC Q ss_conf 42899--999887349 Q gi|254781121|r 172 IGLSD--SLADIRKCN 185 (185) Q Consensus 172 ~GFt~--A~~~~~kc~ 185 (185) +||+. |.++++||| T Consensus 14 MGF~e~~A~~AL~k~~ 29 (43) T d2g3qa1 14 MGFTEEEAHNALEKCN 29 (43) T ss_dssp TTSCHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHCC T ss_conf 5878899999999858 No 3 >d2rdea2 b.45.2.2 (A:24-137) Hypothetical protein VCA0042, N-terminal domain {Vibrio cholerae O395 [TaxId: 345073]} Probab=11.77 E-value=35 Score=11.87 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=13.1 Q ss_pred HHHHHCCCEEEEEEECCCCC Q ss_conf 99973677699999918998 Q gi|254781121|r 144 IEEMKRGKELVVSAKSKRGT 163 (185) Q Consensus 144 i~amk~G~~~~v~~~s~~g~ 163 (185) -..+..|..++|++.+.++. T Consensus 59 ~~~l~~g~~v~vR~~s~~~~ 78 (114) T d2rdea2 59 QYFFQEGFWMNIRAISPRGE 78 (114) T ss_dssp GTTSCTTCEEEEEEEECSBT T ss_pred CCEEECCCEEEEEEEECCCC T ss_conf 20250898799999955998 No 4 >d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Human (Homo sapiens) [TaxId: 9606]} Probab=11.49 E-value=35 Score=11.81 Aligned_cols=17 Identities=6% Similarity=0.350 Sum_probs=13.2 Q ss_pred CHHHCCCCCEEEEEEEC Q ss_conf 01101237758999935 Q gi|254781121|r 37 PTLRNQFSRWSVYVYPD 53 (185) Q Consensus 37 ~~~~~~f~dW~v~~~~~ 53 (185) ...+++|+||+.|+.+. T Consensus 123 K~il~~fkd~qFf~GeS 139 (172) T d1yz1a1 123 KHILANFKNYQFFIGEN 139 (172) T ss_dssp HHHHHTGGGCEEEECTT T ss_pred HHHHHCCCCCEEECCCC T ss_conf 99873655545870588 No 5 >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} Probab=9.66 E-value=28 Score=12.47 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=19.8 Q ss_pred CCCCCHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 4566967899973677699999918998 Q gi|254781121|r 136 KRSQDTVLIEEMKRGKELVVSAKSKRGT 163 (185) Q Consensus 136 ~~~~d~~~i~amk~G~~~~v~~~s~~g~ 163 (185) ..-..+++++.||.|+.++=.+...-|. T Consensus 111 P~lIt~~mv~~Mk~GSVIVDvaidqGG~ 138 (168) T d1pjca1 111 PILVPASLVEQMRTGSVIVDVAVDQGGC 138 (168) T ss_dssp CCCBCHHHHTTSCTTCEEEETTCTTCCS T ss_pred CEEECHHHHHHCCCCCEEEEEECCCCCC T ss_conf 7442598995158996899844378986 No 6 >d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=9.29 E-value=32 Score=12.06 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=14.0 Q ss_pred HCCCHHHCCCCCEEEEEEEC Q ss_conf 10101101237758999935 Q gi|254781121|r 34 QPEPTLRNQFSRWSVYVYPD 53 (185) Q Consensus 34 ~~~~~~~~~f~dW~v~~~~~ 53 (185) +.-...+++|+||+.|+.+. T Consensus 116 ~~vK~Il~nFkd~qFf~GES 135 (168) T d1h6qa_ 116 GFVKKILANFKDYDFYIGES 135 (168) T ss_dssp HHHHHHHTTTTTTCCEECTT T ss_pred HHHHHHHHCCCCCEEECCCC T ss_conf 99999984475545862588 No 7 >d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]} Probab=8.51 E-value=46 Score=11.13 Aligned_cols=38 Identities=5% Similarity=-0.024 Sum_probs=28.3 Q ss_pred CEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECC Q ss_conf 30579986178776103689831034677726999716 Q gi|254781121|r 78 VNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKG 115 (185) Q Consensus 78 ~~~~~v~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~ 115 (185) +..+.+.+.|...+.+.+++..+=.--.+|+..+.|.+ T Consensus 53 dGty~v~y~p~~~G~y~v~V~~~g~~I~gSPF~v~V~~ 90 (108) T d1qfha2 53 DGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGN 90 (108) T ss_dssp SSEEEEEEEEESSEEEEEEEEETTEECBTCSEEEEESC T ss_pred CCEEEEEEEECCCEEEEEEEEECCEECCCCCEEEEECC T ss_conf 98999999978562699999999998899998999779 No 8 >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} Probab=8.31 E-value=47 Score=11.08 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=18.6 Q ss_pred CCCCHHHHHHHHCCCEEEEEEECCCC Q ss_conf 56696789997367769999991899 Q gi|254781121|r 137 RSQDTVLIEEMKRGKELVVSAKSKRG 162 (185) Q Consensus 137 ~~~d~~~i~amk~G~~~~v~~~s~~g 162 (185) .-..+++++.||.|+.++=.+.+.-| T Consensus 131 ~lit~~mv~~Mk~GSVIVDvaidqGG 156 (183) T d1l7da1 131 VLITEEMVTKMKPGSVIIDLAVEAGG 156 (183) T ss_dssp CCSCHHHHTTSCTTCEEEETTGGGTC T ss_pred EEEHHHHHHHCCCCCEEEEEEECCCC T ss_conf 21058999735899489998643799 No 9 >d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]} Probab=5.85 E-value=62 Score=10.32 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=45.5 Q ss_pred CCCCCEEEEEEECCCCCCCEEEEE---EEEECCCCCCCEEEEECCCCCCCCCCCEECCCCCCEEC-CCCCCHHHHHHHHC Q ss_conf 555530579986178776103689---83103467772699971665554443100037874102-45669678999736 Q gi|254781121|r 74 VRHGVNFFIISLKKEENSAYVSEL---VMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFE-KRSQDTVLIEEMKR 149 (185) Q Consensus 74 ~~~~~~~~~v~~~~~~~~~~~vs~---~~gy~~~~~~~v~l~Id~~~~~~~~~~~~~~~~~a~~~-~~~~d~~~i~amk~ 149 (185) ..+|.-.++|+.|..........- ..|+|......+.+.-+..... .+..... + -.-.. -.+.+.++++++.+ T Consensus 99 ~~~Gv~IfyVTnR~~~~~e~T~~nL~K~lG~p~~~~~~vll~~~~~~K~-~rr~~Ik-~-y~I~l~~GD~l~Df~aA~ea 175 (209) T d2b82a1 99 VRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQN-TKSQWLQ-D-KNIRIFYGDSDNDITAARDV 175 (209) T ss_dssp HHHTCEEEEEECSCCCSSCCHHHHHHHHTTCCTTTBCCCEECCCCTTCC-CSHHHHH-H-TTEEEEEESSHHHHHHHHHT T ss_pred HHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCH-HHHHHHH-H-CCEEEEECCCHHHHHHHHHC T ss_conf 9759749999388456579999999987198745666347617999823-7999999-7-49689965988887679875 Q ss_pred CCEEEE Q ss_conf 776999 Q gi|254781121|r 150 GKELVV 155 (185) Q Consensus 150 G~~~~v 155 (185) |.+.+= T Consensus 176 gi~~iR 181 (209) T d2b82a1 176 GARGIR 181 (209) T ss_dssp TCEEEE T ss_pred CCCCEE T ss_conf 998357 No 10 >d2aaaa1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus niger, acid amylase [TaxId: 5061]} Probab=5.75 E-value=43 Score=11.31 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=11.9 Q ss_pred CCEEEEEEECCCCCCCEEEEEEEE-ECCCCCC Q ss_conf 530579986178776103689831-0346777 Q gi|254781121|r 77 GVNFFIISLKKEENSAYVSELVMD-YPLDEEE 107 (185) Q Consensus 77 ~~~~~~v~~~~~~~~~~~vs~~~g-y~~~~~~ 107 (185) |...+.|..+.+..... ..+.++ -+|..+. T Consensus 21 g~qvi~VlsN~Gs~~~~-ytl~~~~sgy~~g~ 51 (95) T d2aaaa1 21 GSQVITVLSNKGSSGSS-YTLTLSGSGYTSGT 51 (95) T ss_dssp TTCEEEEEECSCTTCCC-EEEEECCCCCCTTC T ss_pred CCEEEEEEECCCCCCCC-EEEEECCCCCCCCC T ss_conf 97799999188879984-48972586778998 Done!