Query         gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs    111 out of 516
Neff          8.5 
Searched_HMMs 13730
Date          Wed Jun  1 11:30:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781121.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1txja_ b.88.1.2 (A:) Translat  14.3      22  0.0016   13.0   0.6   21   33-53    118-138 (171)
  2 d2g3qa1 a.5.2.1 (A:1339-1381)   13.2      23  0.0016   13.0   0.3   14  172-185    14-29  (43)
  3 d2rdea2 b.45.2.2 (A:24-137) Hy  11.8      35  0.0025   11.9   2.7   20  144-163    59-78  (114)
  4 d1yz1a1 b.88.1.2 (A:1-172) Tra  11.5      35  0.0026   11.8   0.9   17   37-53    123-139 (172)
  5 d1pjca1 c.2.1.4 (A:136-303) L-   9.7      28   0.002   12.5  -0.2   28  136-163   111-138 (168)
  6 d1h6qa_ b.88.1.2 (A:) Translat   9.3      32  0.0023   12.1   0.1   20   34-53    116-135 (168)
  7 d1qfha2 b.1.18.10 (A:750-857)    8.5      46  0.0033   11.1   5.6   38   78-115    53-90  (108)
  8 d1l7da1 c.2.1.4 (A:144-326) Ni   8.3      47  0.0034   11.1   1.1   26  137-162   131-156 (183)
  9 d2b82a1 c.108.1.12 (A:4-212) C   5.9      62  0.0045   10.3   0.5   79   74-155    99-181 (209)
 10 d2aaaa1 b.71.1.1 (A:382-476) F   5.8      43  0.0031   11.3  -0.7   30   77-107    21-51  (95)

No 1  
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Plasmodium knowlesi [TaxId: 5850]}
Probab=14.28  E-value=22  Score=13.03  Aligned_cols=21  Identities=10%  Similarity=0.199  Sum_probs=14.3

Q ss_pred             HHCCCHHHCCCCCEEEEEEEC
Q ss_conf             210101101237758999935
Q gi|254781121|r   33 SQPEPTLRNQFSRWSVYVYPD   53 (185)
Q Consensus        33 ~~~~~~~~~~f~dW~v~~~~~   53 (185)
                      ++.-...+++|+||+.|+.+.
T Consensus       118 ~~~vK~Il~nFkd~qFf~GES  138 (171)
T d1txja_         118 QPLIKHILTNFDDFEFYMGES  138 (171)
T ss_dssp             HHHHHHHHHTGGGCEEEECTT
T ss_pred             HHHHHHHHHHCCCCEEECCCC
T ss_conf             999999985076544852588


No 2  
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=13.22  E-value=23  Score=13.01  Aligned_cols=14  Identities=29%  Similarity=0.847  Sum_probs=7.0

Q ss_pred             CCHHH--HHHHHHHCC
Q ss_conf             42899--999887349
Q gi|254781121|r  172 IGLSD--SLADIRKCN  185 (185)
Q Consensus       172 ~GFt~--A~~~~~kc~  185 (185)
                      +||+.  |.++++|||
T Consensus        14 MGF~e~~A~~AL~k~~   29 (43)
T d2g3qa1          14 MGFTEEEAHNALEKCN   29 (43)
T ss_dssp             TTSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHCC
T ss_conf             5878899999999858


No 3  
>d2rdea2 b.45.2.2 (A:24-137) Hypothetical protein VCA0042, N-terminal domain {Vibrio cholerae O395 [TaxId: 345073]}
Probab=11.77  E-value=35  Score=11.87  Aligned_cols=20  Identities=25%  Similarity=0.179  Sum_probs=13.1

Q ss_pred             HHHHHCCCEEEEEEECCCCC
Q ss_conf             99973677699999918998
Q gi|254781121|r  144 IEEMKRGKELVVSAKSKRGT  163 (185)
Q Consensus       144 i~amk~G~~~~v~~~s~~g~  163 (185)
                      -..+..|..++|++.+.++.
T Consensus        59 ~~~l~~g~~v~vR~~s~~~~   78 (114)
T d2rdea2          59 QYFFQEGFWMNIRAISPRGE   78 (114)
T ss_dssp             GTTSCTTCEEEEEEEECSBT
T ss_pred             CCEEECCCEEEEEEEECCCC
T ss_conf             20250898799999955998


No 4  
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.49  E-value=35  Score=11.81  Aligned_cols=17  Identities=6%  Similarity=0.350  Sum_probs=13.2

Q ss_pred             CHHHCCCCCEEEEEEEC
Q ss_conf             01101237758999935
Q gi|254781121|r   37 PTLRNQFSRWSVYVYPD   53 (185)
Q Consensus        37 ~~~~~~f~dW~v~~~~~   53 (185)
                      ...+++|+||+.|+.+.
T Consensus       123 K~il~~fkd~qFf~GeS  139 (172)
T d1yz1a1         123 KHILANFKNYQFFIGEN  139 (172)
T ss_dssp             HHHHHTGGGCEEEECTT
T ss_pred             HHHHHCCCCCEEECCCC
T ss_conf             99873655545870588


No 5  
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}
Probab=9.66  E-value=28  Score=12.47  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=19.8

Q ss_pred             CCCCCHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             4566967899973677699999918998
Q gi|254781121|r  136 KRSQDTVLIEEMKRGKELVVSAKSKRGT  163 (185)
Q Consensus       136 ~~~~d~~~i~amk~G~~~~v~~~s~~g~  163 (185)
                      ..-..+++++.||.|+.++=.+...-|.
T Consensus       111 P~lIt~~mv~~Mk~GSVIVDvaidqGG~  138 (168)
T d1pjca1         111 PILVPASLVEQMRTGSVIVDVAVDQGGC  138 (168)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTCTTCCS
T ss_pred             CEEECHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             7442598995158996899844378986


No 6  
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=9.29  E-value=32  Score=12.06  Aligned_cols=20  Identities=10%  Similarity=0.205  Sum_probs=14.0

Q ss_pred             HCCCHHHCCCCCEEEEEEEC
Q ss_conf             10101101237758999935
Q gi|254781121|r   34 QPEPTLRNQFSRWSVYVYPD   53 (185)
Q Consensus        34 ~~~~~~~~~f~dW~v~~~~~   53 (185)
                      +.-...+++|+||+.|+.+.
T Consensus       116 ~~vK~Il~nFkd~qFf~GES  135 (168)
T d1h6qa_         116 GFVKKILANFKDYDFYIGES  135 (168)
T ss_dssp             HHHHHHHTTTTTTCCEECTT
T ss_pred             HHHHHHHHCCCCCEEECCCC
T ss_conf             99999984475545862588


No 7  
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=8.51  E-value=46  Score=11.13  Aligned_cols=38  Identities=5%  Similarity=-0.024  Sum_probs=28.3

Q ss_pred             CEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECC
Q ss_conf             30579986178776103689831034677726999716
Q gi|254781121|r   78 VNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKG  115 (185)
Q Consensus        78 ~~~~~v~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~  115 (185)
                      +..+.+.+.|...+.+.+++..+=.--.+|+..+.|.+
T Consensus        53 dGty~v~y~p~~~G~y~v~V~~~g~~I~gSPF~v~V~~   90 (108)
T d1qfha2          53 DGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGN   90 (108)
T ss_dssp             SSEEEEEEEEESSEEEEEEEEETTEECBTCSEEEEESC
T ss_pred             CCEEEEEEEECCCEEEEEEEEECCEECCCCCEEEEECC
T ss_conf             98999999978562699999999998899998999779


No 8  
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}
Probab=8.31  E-value=47  Score=11.08  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=18.6

Q ss_pred             CCCCHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             56696789997367769999991899
Q gi|254781121|r  137 RSQDTVLIEEMKRGKELVVSAKSKRG  162 (185)
Q Consensus       137 ~~~d~~~i~amk~G~~~~v~~~s~~g  162 (185)
                      .-..+++++.||.|+.++=.+.+.-|
T Consensus       131 ~lit~~mv~~Mk~GSVIVDvaidqGG  156 (183)
T d1l7da1         131 VLITEEMVTKMKPGSVIIDLAVEAGG  156 (183)
T ss_dssp             CCSCHHHHTTSCTTCEEEETTGGGTC
T ss_pred             EEEHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             21058999735899489998643799


No 9  
>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}
Probab=5.85  E-value=62  Score=10.32  Aligned_cols=79  Identities=14%  Similarity=0.124  Sum_probs=45.5

Q ss_pred             CCCCCEEEEEEECCCCCCCEEEEE---EEEECCCCCCCEEEEECCCCCCCCCCCEECCCCCCEEC-CCCCCHHHHHHHHC
Q ss_conf             555530579986178776103689---83103467772699971665554443100037874102-45669678999736
Q gi|254781121|r   74 VRHGVNFFIISLKKEENSAYVSEL---VMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFE-KRSQDTVLIEEMKR  149 (185)
Q Consensus        74 ~~~~~~~~~v~~~~~~~~~~~vs~---~~gy~~~~~~~v~l~Id~~~~~~~~~~~~~~~~~a~~~-~~~~d~~~i~amk~  149 (185)
                      ..+|.-.++|+.|..........-   ..|+|......+.+.-+..... .+..... + -.-.. -.+.+.++++++.+
T Consensus        99 ~~~Gv~IfyVTnR~~~~~e~T~~nL~K~lG~p~~~~~~vll~~~~~~K~-~rr~~Ik-~-y~I~l~~GD~l~Df~aA~ea  175 (209)
T d2b82a1          99 VRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQN-TKSQWLQ-D-KNIRIFYGDSDNDITAARDV  175 (209)
T ss_dssp             HHHTCEEEEEECSCCCSSCCHHHHHHHHTTCCTTTBCCCEECCCCTTCC-CSHHHHH-H-TTEEEEEESSHHHHHHHHHT
T ss_pred             HHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCH-HHHHHHH-H-CCEEEEECCCHHHHHHHHHC
T ss_conf             9759749999388456579999999987198745666347617999823-7999999-7-49689965988887679875


Q ss_pred             CCEEEE
Q ss_conf             776999
Q gi|254781121|r  150 GKELVV  155 (185)
Q Consensus       150 G~~~~v  155 (185)
                      |.+.+=
T Consensus       176 gi~~iR  181 (209)
T d2b82a1         176 GARGIR  181 (209)
T ss_dssp             TCEEEE
T ss_pred             CCCCEE
T ss_conf             998357


No 10 
>d2aaaa1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus niger, acid amylase [TaxId: 5061]}
Probab=5.75  E-value=43  Score=11.31  Aligned_cols=30  Identities=10%  Similarity=0.121  Sum_probs=11.9

Q ss_pred             CCEEEEEEECCCCCCCEEEEEEEE-ECCCCCC
Q ss_conf             530579986178776103689831-0346777
Q gi|254781121|r   77 GVNFFIISLKKEENSAYVSELVMD-YPLDEEE  107 (185)
Q Consensus        77 ~~~~~~v~~~~~~~~~~~vs~~~g-y~~~~~~  107 (185)
                      |...+.|..+.+..... ..+.++ -+|..+.
T Consensus        21 g~qvi~VlsN~Gs~~~~-ytl~~~~sgy~~g~   51 (95)
T d2aaaa1          21 GSQVITVLSNKGSSGSS-YTLTLSGSGYTSGT   51 (95)
T ss_dssp             TTCEEEEEECSCTTCCC-EEEEECCCCCCTTC
T ss_pred             CCEEEEEEECCCCCCCC-EEEEECCCCCCCCC
T ss_conf             97799999188879984-48972586778998


Done!