RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781121|ref|YP_003065534.1| hypothetical protein
CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)



>gnl|CDD|112412 pfam03594, BenE, Benzoate membrane transport protein. 
          Length = 378

 Score = 29.2 bits (66), Expect = 0.71
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 10  FVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTV 68
           F PR   L VL+V   +A       P P L  + +R   ++ P+ + +   SL++P+ +
Sbjct: 161 FAPRYAVLAVLLVGVAAAALLGQVHPAP-LPLELAR-PQWITPEFSWQATLSLALPLYL 217


>gnl|CDD|36707 KOG1494, KOG1494, KOG1494, NAD-dependent malate dehydrogenase
           [Energy production and conversion].
          Length = 345

 Score = 28.3 bits (63), Expect = 1.3
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 64  VPVTVEPLEGVRHGVN-----FFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNA 118
           VP+  E L+  + GV      F + +L     + +V+E++    LD  E V + V G +A
Sbjct: 152 VPIAAEVLK--KAGVYDPKKLFGVTTLDVVRANTFVAEVLN---LDPAEDVDVPVIGGHA 206

Query: 119 SGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSL 178
             TI  + S           +   L   ++ G   VV AK+  G+ T        LS + 
Sbjct: 207 GITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSAT--------LSMAY 258

Query: 179 ADIR 182
           A  +
Sbjct: 259 AGAK 262


>gnl|CDD|38842 KOG3636, KOG3636, KOG3636, Uncharacterized conserved protein,
           contains TBC and Rhodanese domains [General function
           prediction only].
          Length = 669

 Score = 27.4 bits (60), Expect = 2.5
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 53  DLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEE--NSAYVS---ELVMDYPLDEEE 107
            +++ LC  +SV       E     V FFI+  +  E  N+ ++S    L     L E E
Sbjct: 300 QMSQALCLPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPE 359

Query: 108 MVSLEVKG 115
             ++ V  
Sbjct: 360 KFAIAVNS 367


>gnl|CDD|107367 cd06372, PBP1_GC_G_like, Ligand-binding domain of membrane guanylyl
           cyclase G.  This group includes the ligand-binding
           domain of membrane guanylyl cyclase G (GC-G) which is a
           sperm surface receptor and might function, similar to
           its sea urchin counterpart, in the early signaling event
           that regulates the Ca2+ influx/efflux and subsequent
           motility response in sperm. GC-G appears to be a
           pseudogene in human. Furthermore, in contrast to the
           other orphan receptor GCs, GC-G has a broad tissue
           distribution in rat, including lung, intestine, kidney,
           and skeletal muscle.
          Length = 391

 Score = 26.4 bits (58), Expect = 4.4
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 81  FIISLKKEEN----SAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFEK 136
           F  SL  EE     SAY+ + V+ Y L  +EM+      +N    +  ++   N+   + 
Sbjct: 288 FQSSLSSEEQVSPYSAYLHDAVLLYALAVKEMLKAGKDFRNGRQLVSTLRGA-NQVELQG 346

Query: 137 RSQDTVLIEEMKRGKELVVSAKSKRGTNTRYI 168
            +   +L E+ KR  +  V A  K G ++ ++
Sbjct: 347 ITGLVLLDEQGKRQMDYSVYALQKSGNSSLFL 378


>gnl|CDD|36012 KOG0793, KOG0793, KOG0793, Protein tyrosine phosphatase [Signal
           transduction mechanisms].
          Length = 1004

 Score = 26.2 bits (57), Expect = 6.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 22  VSSVSAGYANASQPEPTLRNQFSRWS 47
           +SSVS+ +++   P P+ R+  S WS
Sbjct: 679 ISSVSSQFSDGPIPSPSSRSSTSSWS 704


>gnl|CDD|30089 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
           KIF2 is a protein expressed in neurons, which has been
           associated with axonal transport and neuron development;
           alternative splice forms have been implicated in
           lysosomal translocation. This catalytic (head) domain
           has ATPase activity and belongs to the larger group of
           P-loop NTPases. Kinesins are microtubule-dependent
           molecular motors that play important roles in
           intracellular transport and in cell division. In this
           subgroup the motor domain is found in the middle
           (M-type) of the protein chain. M-type kinesins are (+)
           end-directed motors, i.e. they transport cargo towards
           the (+) end of the microtubule. Kinesin motor domains
           hydrolyze ATP at a rate of about 80 per second, and move
           along the microtubule at a speed of about 6400 Angstroms
           per second (KIF2 may be slower). To achieve that,
           kinesin head groups work in pairs. Upon replacing ADP
           with ATP, a kinesin motor domain increases its affinity
           for microtubule binding and locks in place. Also, the
           neck linker binds to the motor domain, which repositions
           the other head domain through the coiled-coil domain
           close to a second tubulin dimer, about 80 Angstroms
           along the microtubule. Meanwhile, ATP hydrolysis takes
           place, and when the second head domain binds to the
           microtubule, the first domain again replaces ADP with
           ATP, triggering a conformational change that pulls the
           first domain forward..
          Length = 322

 Score = 25.6 bits (56), Expect = 8.2
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 5   VLKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLR 40
           VL+D F+   +    +M++++S   ++      TLR
Sbjct: 284 VLRDSFIGNSK---TVMIATISPSASSCEHTLNTLR 316


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,129,281
Number of extensions: 103750
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 9
Length of query: 185
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,362,145
Effective search space: 423128065
Effective search space used: 423128065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)