BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781121|ref|YP_003065534.1| hypothetical protein
CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 185

 Score =  378 bits (970), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MFLNVLKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCF 60
           MFLNVLKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCF
Sbjct: 1   MFLNVLKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCF 60

Query: 61  SLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASG 120
           SLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASG
Sbjct: 61  SLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASG 120

Query: 121 TIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLAD 180
           TIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLAD
Sbjct: 121 TIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLAD 180

Query: 181 IRKCN 185
           IRKCN
Sbjct: 181 IRKCN 185


>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 222

 Score = 26.6 bits (57), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 39  LRNQFS---RWSVYVYPDLNKKLCFSLSVPVTVEPLEGVR-----HGVNFFIISLKKEE 89
           L+N +S   +W  Y Y  +N  L  SLS+  +V  +E +R     +G+  F+  L KEE
Sbjct: 163 LQNAYSEIKKWEFYDYVLINDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEE 221


>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 23.5 bits (49), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 111 LEVKGKNASGTIFKMKS--YNNRAAFEKRSQ----DTVLIEEMKRGKELVVSAKSKRGTN 164
           LEVK    +GT F+       +R   +KR +     TV I+E++  K  +VS+ + R   
Sbjct: 116 LEVK-TVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTAL 174

Query: 165 TR 166
           T+
Sbjct: 175 TK 176


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 22.7 bits (47), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 14  IRFLIVLMVSSVSAGYANASQPEPTLRNQF 43
           +R  IVLM   +    + AS+ E T+R++ 
Sbjct: 200 VRKEIVLMTEEIDRAISRASELEKTVRSEI 229


>537021.9.peg.753_1 
          Length = 1033

 Score = 22.7 bits (47), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 136 KRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLAD 180
           +R+    + EEM + KE  +S  SK G +     ++  L    AD
Sbjct: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,465
Number of Sequences: 1233
Number of extensions: 4315
Number of successful extensions: 13
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 185
length of database: 328,796
effective HSP length: 69
effective length of query: 116
effective length of database: 243,719
effective search space: 28271404
effective search space used: 28271404
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)