Query         gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 222
No_of_seqs    119 out of 915
Neff          7.0 
Searched_HMMs 39220
Date          Mon May 30 04:54:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781122.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 cd07995 TPK Thiamine pyrophosp 100.0       0       0  361.5  26.1  202   12-214     1-207 (208)
  2 COG1564 THI80 Thiamine pyropho 100.0       0       0  340.9  23.6  207   10-218     1-210 (212)
  3 KOG3153 consensus              100.0 5.1E-40 1.3E-44  274.1  17.2  202    8-210    21-243 (250)
  4 pfam04263 TPK_catalytic Thiami 100.0 7.3E-33 1.9E-37  228.7  13.7  119   17-138     1-122 (122)
  5 TIGR01378 thi_PPkinase thiamin 100.0 5.6E-31 1.4E-35  216.7  15.3  200   13-213     2-211 (211)
  6 pfam04265 TPK_B1_binding Thiam  99.3 1.2E-11   3E-16   94.0   8.0   64  148-211     1-66  (66)
  7 COG4825 Uncharacterized membra  98.6 5.2E-07 1.3E-11   64.5   8.8   61   10-70    181-245 (395)
  8 COG1634 Uncharacterized Rossma  98.1   5E-05 1.3E-09   52.0  10.0   59    8-68     51-109 (232)
  9 pfam01973 MAF_flag10 Protein o  97.7 0.00086 2.2E-08   44.1  11.0   51   10-61     25-77  (169)
 10 COG2604 Uncharacterized protei  96.8  0.0016 4.2E-08   42.3   4.1   53    5-57    220-274 (594)
 11 PRK03202 6-phosphofructokinase  84.3     3.4 8.6E-05   21.3   7.2   94    8-111     1-106 (323)
 12 KOG3043 consensus               67.1     3.4 8.7E-05   21.3   1.8   74   41-119    59-139 (242)
 13 PRK01395 V-type ATP synthase s  65.1     8.2 0.00021   18.9   3.4   69   54-135     7-75  (104)
 14 pfam04914 DltD_C DltD C-termin  59.8      13 0.00032   17.7   3.6   41   76-116    27-67  (130)
 15 PRK00726 murG N-acetylglucosam  54.8      16 0.00042   17.0   5.0   11    9-19      1-11  (359)
 16 PRK06932 glycerate dehydrogena  54.2      17 0.00043   16.9   5.5  112    9-125     1-115 (314)
 17 pfam00365 PFK Phosphofructokin  51.6      19 0.00047   16.6   7.3   92   10-111     1-104 (279)
 18 PRK12446 N-acetylglucosaminyl   51.5      19 0.00047   16.6   5.1   11    9-19      1-11  (352)
 19 KOG2724 consensus               50.0      16 0.00041   17.0   2.8   77   65-147   379-455 (487)
 20 KOG0228 consensus               48.3     8.8 0.00022   18.7   1.2   34   50-95    277-310 (571)
 21 TIGR02482 PFKA_ATP 6-phosphofr  47.7      19 0.00048   16.6   2.8   69   34-111    31-103 (302)
 22 cd01144 BtuF Cobalamin binding  47.2      22 0.00055   16.2   4.6   63   32-94     20-101 (245)
 23 TIGR01085 murE UDP-N-acetylmur  46.9      22 0.00056   16.2   3.5   85   45-139   312-414 (494)
 24 smart00852 MoCF_biosynth Proba  44.1      24 0.00061   15.9   5.4   64   59-124    16-83  (135)
 25 pfam01884 PcrB PcrB family. Th  42.7      25 0.00065   15.8   5.8   49   67-119     4-53  (231)
 26 PRK13372 pcmA protocatechuate   42.1      26 0.00066   15.7   3.1   35   82-118   308-344 (444)
 27 PRK07085 diphosphate--fructose  41.3      27 0.00068   15.6  11.0  112    9-135    72-198 (557)
 28 cd01567 NAPRTase_PncB Nicotina  38.8      21 0.00054   16.2   2.0   24   82-105   300-323 (343)
 29 PRK01160 hypothetical protein;  38.7      29 0.00075   15.4   8.4   79   17-95     24-108 (178)
 30 pfam12000 DUF3495 Domain of un  37.7      29 0.00075   15.3   2.6   39   37-77     52-93  (172)
 31 pfam10185 Mesd Chaperone for w  37.6      25 0.00065   15.7   2.2   87   91-183    55-146 (158)
 32 cd00764 Eukaryotic_PFK Phospho  37.5      30 0.00078   15.2   9.2   91    7-108   387-488 (762)
 33 cd00763 Bacterial_PFK Phosphof  37.2      31 0.00079   15.2   9.4   92   10-111     1-104 (317)
 34 TIGR02477 PFKA_PPi diphosphate  37.0      31 0.00079   15.2   7.5  115    8-136    73-201 (566)
 35 pfam04439 Adenyl_transf Strept  36.6      31  0.0008   15.2   3.7  104   13-142    23-131 (282)
 36 TIGR02021 BchM-ChlM magnesium   36.6      21 0.00053   16.3   1.6  111   32-146    76-196 (224)
 37 PRK11106 queuosine biosynthesi  36.6      32  0.0008   15.2   7.0   97    9-107     1-123 (231)
 38 pfam08538 DUF1749 Protein of u  36.3      32 0.00081   15.1   2.7   34   80-114    84-122 (303)
 39 KOG4225 consensus               35.8      32 0.00083   15.1   3.2   83  137-220   250-338 (489)
 40 pfam00994 MoCF_biosynth Probab  35.5      33 0.00084   15.0   5.0   65   59-124    15-82  (140)
 41 cd00758 MoCF_BD MoCF_BD: molyb  35.5      33 0.00084   15.0   7.2   64   59-124    17-84  (133)
 42 TIGR01574 miaB-methiolase tRNA  34.9      30 0.00078   15.3   2.3   83   82-166   184-279 (456)
 43 pfam02568 ThiI Thiamine biosyn  32.5     3.9 9.9E-05   20.9  -2.6  157   11-173     5-185 (197)
 44 PRK05912 tyrosyl-tRNA syntheta  31.0      39 0.00099   14.6   2.9   17   44-60     59-75  (402)
 45 cd00765 Pyrophosphate_PFK Phos  29.9      40   0.001   14.5  10.1  113    8-135    71-198 (550)
 46 PRK08349 hypothetical protein;  29.2     7.4 0.00019   19.2  -1.6  159   10-174     1-183 (198)
 47 TIGR00338 serB phosphoserine p  28.4      13 0.00033   17.6  -0.5   49   46-94      8-65  (223)
 48 cd00363 PFK Phosphofructokinas  27.2      45  0.0011   14.2  10.2  102   10-126     1-114 (338)
 49 PRK00139 murE UDP-N-acetylmura  26.4      46  0.0012   14.1   3.3   10   22-31     48-57  (481)
 50 PRK09288 purT phosphoribosylgl  25.8      48  0.0012   14.0   5.6   79    1-79      4-103 (395)
 51 pfam01075 Glyco_transf_9 Glyco  25.6      48  0.0012   14.0   4.0   30   10-40     13-42  (249)
 52 PRK10376 putative oxidoreducta  25.5      48  0.0012   14.0   4.3   20   88-110   148-167 (291)
 53 COG0412 Dienelactone hydrolase  25.1      49  0.0013   13.9   3.4   75   39-113    44-125 (236)
 54 TIGR02470 sucr_synth sucrose s  25.0      32 0.00081   15.1   1.0   26   35-60    375-400 (790)
 55 TIGR00154 ispE 4-diphosphocyti  24.4      51  0.0013   13.8   2.1   15   85-99     68-82  (322)
 56 COG1785 PhoA Alkaline phosphat  24.1      51  0.0013   13.8   2.6   29   87-118   286-314 (482)
 57 PRK06487 glycerate dehydrogena  23.8      52  0.0013   13.8   6.1  151   10-168     1-159 (317)
 58 PRK05647 purN phosphoribosylgl  23.6      52  0.0013   13.8   8.7   23    9-31      1-23  (200)
 59 PRK13354 tyrosyl-tRNA syntheta  21.8      57  0.0015   13.5   3.0   20   41-60     61-80  (405)
 60 PRK11133 serB phosphoserine ph  21.7      48  0.0012   14.0   1.4   45   50-94    108-161 (322)
 61 cd03789 GT1_LPS_heptosyltransf  21.4      58  0.0015   13.5   4.0   13   37-49     35-47  (279)
 62 KOG4530 consensus               21.2      59  0.0015   13.4   4.1   54   72-125    86-146 (199)
 63 PRK09912 aldo-keto reductase;   21.1      59  0.0015   13.4   4.4   38   77-117   137-176 (346)
 64 pfam00326 Peptidase_S9 Prolyl   21.0      59  0.0015   13.4   2.3   33   80-112    41-76  (212)
 65 TIGR00337 PyrG CTP synthase; I  20.7      60  0.0015   13.4   1.7   28   43-70    205-233 (571)
 66 PRK05625 hypothetical protein;  20.0      62  0.0016   13.3   7.7   63   51-117   119-181 (239)

No 1  
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=100.00  E-value=0  Score=361.54  Aligned_cols=202  Identities=36%  Similarity=0.613  Sum_probs=184.8

Q ss_pred             EEEEECCCCCCCHHHHHHHC-CCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC--CCEEEECCCCCCCHHH
Q ss_conf             99998779998168898513-49499991888999988997349997211299889974031--8859920567779489
Q gi|254781122|r   12 FAILLNGDIRVTNRLLCAIE-SCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS--IKRIFYPNDKDMADGE   88 (222)
Q Consensus        12 ~~Ii~nG~~~~~~~~~~~~~-~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~--~~~i~~~~dkD~TD~e   88 (222)
                      ++|++||+.|....+...++ .+++||||||+++|+++|+.||++||||||++++++++++.  ..++++|+|||+||+|
T Consensus         1 ~lIi~nG~~~~~~~~~~~~~~~~~iIaaDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~kD~TD~e   80 (208)
T cd07995           1 ALILLGGPLPDSPLLLKLWKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDFTDFE   80 (208)
T ss_pred             CEEEECCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHH
T ss_conf             99998999997389999986399899981189999986998789985543489899999885398389997103640799


Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEEC-CCEEEEEEECCC
Q ss_conf             9999999759975999953787812478899999998862698199994891899996795699705-980899975157
Q gi|254781122|r   89 IAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLP-ENSVFSIVCLED  167 (222)
Q Consensus        89 kAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~-~g~~~Sl~p~~~  167 (222)
                      |||++|.++++++++++|| +|||+||+|+|+++|+++.+.+.+++++++++.++++.+|.+.++.. .|+++|++|+++
T Consensus        81 kAl~~~~~~~~~~i~i~Ga-~GgR~DH~lanl~~l~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~~g~~~Sl~pl~~  159 (208)
T cd07995          81 KALKLALERGADEIVILGA-TGGRLDHTLANLNLLLKYAKDGIKIVLIDEQNEIFLLLPGSHTLELEEEGKYVSLIPLGE  159 (208)
T ss_pred             HHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCEEEEECCCCCEEEEEECCC
T ss_conf             9999999779988999937-899677899999999988744983999959989999929977996369999999998668


Q ss_pred             CCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEEEEEE
Q ss_conf             762573041665378785278753884998495-79999579099997
Q gi|254781122|r  168 IENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILIS  214 (222)
Q Consensus       168 ~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~llvi~  214 (222)
                      .++||++||||||++++|.+++++|+||++.++ ++|++++|.++++.
T Consensus       160 ~~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~~~I~v~~G~llvi~  207 (208)
T cd07995         160 VTGLTLKGLKYPLDNATLSFGSSLGTSNEFTGEKATVSVESGLLLVIL  207 (208)
T ss_pred             CCEEEECCCEEECCCCEECCCCCCEEEEEEECCEEEEEECCCEEEEEE
T ss_conf             724786078877799553169981673699898399998899899998


No 2  
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=340.86  Aligned_cols=207  Identities=37%  Similarity=0.580  Sum_probs=187.9

Q ss_pred             EEEEEEECCCCCCC-HHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCE-EEECCCCCCCHH
Q ss_conf             06999987799981-6889851349499991888999988997349997211299889974031885-992056777948
Q gi|254781122|r   10 IDFAILLNGDIRVT-NRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKR-IFYPNDKDMADG   87 (222)
Q Consensus        10 ~~~~Ii~nG~~~~~-~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~-i~~~~dkD~TD~   87 (222)
                      |...+++||+.+.+ +.+...++..++||||||+++|++++++|+++||||||++.|++++++.+.+ +++|+|||+||+
T Consensus         1 ~~~~~il~g~~~~~~~~~~~~~~~~~~v~aDgGa~~l~~~gl~P~~~vGDfDSv~~e~~~~~~~~~~~~~f~~eKd~TD~   80 (212)
T COG1564           1 MSAVLILNGGILAPTDRLDYLWKFDKIVAADGGANHLLELGLVPDLAVGDFDSVSEELLAYYKEKTVTIKFPAEKDSTDL   80 (212)
T ss_pred             CCEEEEECCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEECCHHHCCCHH
T ss_conf             94699971765578256432045666999870888999849986578724645679999998645762346834354669


Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEEEEECCC
Q ss_conf             99999999759975999953787812478899999998862698199994891899996795699705980899975157
Q gi|254781122|r   88 EIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLED  167 (222)
Q Consensus        88 ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~g~~~Sl~p~~~  167 (222)
                      |+|++++.++++++++++|| +|||+||+|+|++++++++..+.++.+.++++.++.++||.+.++.+++..+|.|+.+.
T Consensus        81 elAl~~a~e~g~d~i~i~Ga-~GGR~DH~l~nl~ll~~~~~~~~~i~l~~~~n~~~~l~~g~~~i~~~~~~~~s~f~~~~  159 (212)
T COG1564          81 ELALDEALERGADEIVILGA-LGGRLDHALANLFLLLRPAKSGFKITLISGQNLITPLPPGQHTIEKDPGYLYSIFGGED  159 (212)
T ss_pred             HHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCEEECCCCCCCEEEEECCC
T ss_conf             99999999809977999815-78818999999999875442064699963785799847985673268995189984153


Q ss_pred             CCEEEEECEEEECCCCEECCCCCEEEEEEECC-CEEEEEECCEEEEEECCCC
Q ss_conf             76257304166537878527875388499849-5799995790999974410
Q gi|254781122|r  168 IENITITGAKYTLSHHSLSLGSSRAVSNVVTK-NLTIMLDQGLAILISRPYD  218 (222)
Q Consensus       168 ~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~-~~~I~~~~G~llvi~~~kd  218 (222)
                      ..++|++|+||||+++.+++++++++||++.+ .++|++++|.++++. ++|
T Consensus       160 ~~~Lti~g~KypL~~~~~~~g~~~siSN~~~~~~~~vs~~~G~~l~~~-~~~  210 (212)
T COG1564         160 VAGLTIKGAKYPLKNADLPFGSSRSISNEFIGDPVTVSLKSGIVLVIA-SPD  210 (212)
T ss_pred             CCCEEECCCEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCEEEEEE-CCC
T ss_conf             121686164622567532145506873104177089995797899997-167


No 3  
>KOG3153 consensus
Probab=100.00  E-value=5.1e-40  Score=274.13  Aligned_cols=202  Identities=21%  Similarity=0.321  Sum_probs=173.1

Q ss_pred             CCEEEEEEECCCCCCCHH-HHHHHCCCCE-EEEEHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHCCCC-EEEEC
Q ss_conf             740699998779998168-8985134949-99918889999889-----9734999721129988997403188-59920
Q gi|254781122|r    8 KFIDFAILLNGDIRVTNR-LLCAIESCKV-IAADGGICHASQLK-----VVPELWIGDFDSVDRTLLQQWSSIK-RIFYP   79 (222)
Q Consensus         8 ~~~~~~Ii~nG~~~~~~~-~~~~~~~~~i-IavDgGa~~l~~~~-----i~Pd~iiGDfDSi~~~~~~~~~~~~-~i~~~   79 (222)
                      +...+++++|+++..+.. ...+|+.+.+ +|||||||+++++-     ..||+|+|||||+++|++++|++.+ .+++.
T Consensus        21 d~~~~lvvLN~~iq~p~~~f~~LWk~A~lRvcaDGgaNrlyd~~~~~~~~~Pd~I~GDfDSi~~ev~~yy~~~g~~vV~~  100 (250)
T KOG3153          21 DCKSVLVVLNQEIQIPDNRFRLLWKKAKLRVCADGGANRLYDYLSDRTSEKPDYICGDFDSITEEVDDYYKKNGVTVVHT  100 (250)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             84359999678887853789998764006575167433442303544344876565360231099999998529736757


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCE------EEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEE
Q ss_conf             5677794899999999759975------9999537878124788999999988626981999948918999967956997
Q gi|254781122|r   80 NDKDMADGEIAVHKALQSGARN------IILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFD  153 (222)
Q Consensus        80 ~dkD~TD~ekAL~~~~~~~~~~------i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~  153 (222)
                      ||||+|||.||++++.++.-..      ++++|| .||||||+++|++.|+++.+...++.++.+.+.++.+.||.+.++
T Consensus       101 pdQd~TDftKcv~~i~~~~~~~e~~~~~Ivvlgg-lgGRfDq~m~nln~Ly~~~~~~~~i~llt~~~li~Ll~pg~h~ie  179 (250)
T KOG3153         101 PDQDTTDFTKCVKWIQEHKTLTEWKFLNIVVLGG-LGGRFDQTMANLNTLYRAVDIQFPIFLLTEDSLIDLLQPGKHRIE  179 (250)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECC-CCCCHHHHHHHHHHHHEHHCCCCCEEEECCCCHHHHHCCCCCEEE
T ss_conf             8767213899999998862364420445899646-676277777767766121035643699527756765268973377


Q ss_pred             EC-----CCEEEEEEECCC-CCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEE
Q ss_conf             05-----980899975157-762573041665378785278753884998495-7999957909
Q gi|254781122|r  154 LP-----ENSVFSIVCLED-IENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLA  210 (222)
Q Consensus       154 ~~-----~g~~~Sl~p~~~-~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~l  210 (222)
                      ..     .+..|+|+|+++ +...++.||||+|.+..+++|...++||...++ +.|+.+...+
T Consensus       180 ~~v~~~~~~~~CGLiPIGq~~~~ktT~GLkWnl~n~~~~fgglvStsN~~~~~~vtvetd~~li  243 (250)
T KOG3153         180 LHVNLGMTGKWCGLIPIGQPETVKTTTGLKWNLSNRRMKFGGLVSTSNTYDGEVVTVETDHDLI  243 (250)
T ss_pred             ECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEEECCEEEEECCEEECCEEEEECCCCEE
T ss_conf             2566654567432465366101454034120332560111408863342421179996189649


No 4  
>pfam04263 TPK_catalytic Thiamin pyrophosphokinase, catalytic domain. Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=100.00  E-value=7.3e-33  Score=228.69  Aligned_cols=119  Identities=30%  Similarity=0.453  Sum_probs=105.7

Q ss_pred             CCCCCCCHHHHHHHCC-CCEEEEEHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHCCCC-EEEECCCCCCCHHHHHHHH
Q ss_conf             7799981688985134-94999918889999889-9734999721129988997403188-5992056777948999999
Q gi|254781122|r   17 NGDIRVTNRLLCAIES-CKVIAADGGICHASQLK-VVPELWIGDFDSVDRTLLQQWSSIK-RIFYPNDKDMADGEIAVHK   93 (222)
Q Consensus        17 nG~~~~~~~~~~~~~~-~~iIavDgGa~~l~~~~-i~Pd~iiGDfDSi~~~~~~~~~~~~-~i~~~~dkD~TD~ekAL~~   93 (222)
                      ||++|.  ++.+.|+. +++||||||+++|++++ +.||++||||||++++++++++... .++++||||+||+||||++
T Consensus         1 Ng~~P~--~~~~l~~~a~~iIa~DgGa~~l~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~dkD~TD~ekAl~~   78 (122)
T pfam04263         1 NGDLPD--FVRDLWKNADLRVAADGGANHLRDFLSLKPDFVVGDFDSITEELRAYYKEAGVNLIHFPEKDDTDLELALDE   78 (122)
T ss_pred             CCCCHH--HHHHHHHHCCEEEEECCHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH
T ss_conf             987207--899999868999997249999999289898989717789985899999856972887856675689999999


Q ss_pred             HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             997599759999537878124788999999988626981999948
Q gi|254781122|r   94 ALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSG  138 (222)
Q Consensus        94 ~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~  138 (222)
                      |.++++++++++|| +|||+||+|||+++|++|+++++.+++.++
T Consensus        79 ~~~~~~~~i~i~G~-~GgR~DH~lanl~~L~k~~~~~~~i~l~d~  122 (122)
T pfam04263        79 ALELGADEIVILGA-LGGRLDHALANLNLLLRLAYTDNTIFLLDG  122 (122)
T ss_pred             HHHCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             99779998999888-899776999999999999846984998149


No 5  
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase; InterPro: IPR006282   This entry represents prokaryotic and eukaryotic thiamin pyrophosphokinase, which converts thiamin (vitamin B1) into the enzyme cofactor thiamin pyrophosphate (TPP, coenzyme B1). ; GO: 0004788 thiamin diphosphokinase activity, 0006772 thiamin metabolic process.
Probab=99.97  E-value=5.6e-31  Score=216.71  Aligned_cols=200  Identities=33%  Similarity=0.525  Sum_probs=176.0

Q ss_pred             EEEECCCCCCCHHHHHH-HCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC--CCEEEECCCCCCCHHHH
Q ss_conf             99987799981688985-1349499991888999988997349997211299889974031--88599205677794899
Q gi|254781122|r   13 AILLNGDIRVTNRLLCA-IESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS--IKRIFYPNDKDMADGEI   89 (222)
Q Consensus        13 ~Ii~nG~~~~~~~~~~~-~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~--~~~i~~~~dkD~TD~ek   89 (222)
                      ++++||+.+........ ...+.++|+|||++++++.++.|++++|||||+..+.++.+..  ...+.++++||.||+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~p~~~~gd~ds~~~~~~~~~~~~~~~~~~~~~~~~~td~~~   81 (211)
T TIGR01378         2 LILAGGEAPLLELPLKLLKEADLLIAADGGANHLLKLGLTPDLIVGDFDSITEEELEFYKKAGVKLIVFPAEKDTTDLEL   81 (211)
T ss_pred             CEECCCCCCCCCCCCHHHCCCCEEEEECCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             11045443431100000002330465211013344226763156504444326788766531123221242113311688


Q ss_pred             HHHHHHHCCCC-EEEEEECCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEECCCEEEEEECCCEEEE-ECCCEEEEEEEC
Q ss_conf             99999975997-59999537878124788999999988--626981999948918999967956997-059808999751
Q gi|254781122|r   90 AVHKALQSGAR-NIILVGSISGQRFDYALQHITLATSL--KKKNINVTLTSGIEEVFILVPGKHSFD-LPENSVFSIVCL  165 (222)
Q Consensus        90 AL~~~~~~~~~-~i~i~gg~~G~R~DH~lani~~L~~~--~~~~~~i~l~~~~~~i~~l~~g~~~~~-~~~g~~~Sl~p~  165 (222)
                      |+.++.+.++. .+.++|+ +|+|+||.++|++++..+  ...+..+.+.++.+.++.+.+|.+.+. ...+.++|++|+
T Consensus        82 a~~~~~~~~~~~~~~~~g~-~ggr~dh~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  160 (211)
T TIGR01378        82 ALKKALERGADAEITILGA-TGGRLDHLLANLNLLLEPQLLKRGIKVRLIDEQNVITLLLPGKYTIIKEEKGSYISLLPF  160 (211)
T ss_pred             HHHHHHHCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEECC
T ss_conf             9999875067412688621-453035666665555433232036237870465146640466421113356532443114


Q ss_pred             C-CCCEEEEECEEEECCCCEECCCC-CEEEEEEECCC-EEEEEECCEEEEE
Q ss_conf             5-77625730416653787852787-53884998495-7999957909999
Q gi|254781122|r  166 E-DIENITITGAKYTLSHHSLSLGS-SRAVSNVVTKN-LTIMLDQGLAILI  213 (222)
Q Consensus       166 ~-~~~~vt~~Glky~L~~~~l~~~~-~~~~SN~~~~~-~~I~~~~G~llvi  213 (222)
                      + .+.+++++|+||+|++..+..+. ..++||++.++ +.+++++|.++++
T Consensus       161 ~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~sn~~~~~~~~~~~~~g~~~~~  211 (211)
T TIGR01378       161 GGDVAGLTTKGLKYPLNNADLKFGGLSLGISNEFIGEKATVSVESGILLVI  211 (211)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCEEEEEECCCEEEEC
T ss_conf             641100001211012220010245432001012214404786516335518


No 6  
>pfam04265 TPK_B1_binding Thiamin pyrophosphokinase, vitamin B1 binding domain. Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=99.29  E-value=1.2e-11  Score=94.04  Aligned_cols=64  Identities=28%  Similarity=0.434  Sum_probs=55.3

Q ss_pred             CCEEEEECCC-EEEEEEECCCCCEEEEECEEEECCCCEECCCCCEEEEEEECC-CEEEEEECCEEE
Q ss_conf             9569970598-089997515776257304166537878527875388499849-579999579099
Q gi|254781122|r  148 GKHSFDLPEN-SVFSIVCLEDIENITITGAKYTLSHHSLSLGSSRAVSNVVTK-NLTIMLDQGLAI  211 (222)
Q Consensus       148 g~~~~~~~~g-~~~Sl~p~~~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~-~~~I~~~~G~ll  211 (222)
                      |.+.+....+ +++|++|+++++++|++|+||||++++|.+++++++||++.+ .++|++++|.++
T Consensus         1 G~~~i~~~~~~~y~Slip~~~~~~lt~~G~kY~L~~~~l~~g~~~~~SNe~~~~~~~is~~~G~ll   66 (66)
T pfam04265         1 GKHLIKKEPDYKYCSFIPLGEPVELTTKGLKYPLTNQDLSFGSSISTSNEFIDETGEVSFETGILL   66 (66)
T ss_pred             CCEEEEECCCCCEEEEEECCCCEEEEEECCEEECCCCEECCCCCCEEEEEEECCEEEEEECCEEEC
T ss_conf             956987568997999998989806997477937687454189911883669897489998407989


No 7  
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=98.56  E-value=5.2e-07  Score=64.54  Aligned_cols=61  Identities=21%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             EEEEEEECCCCCCCH--HHHHHHC-CCCE-EEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             069999877999816--8898513-4949-99918889999889973499972112998899740
Q gi|254781122|r   10 IDFAILLNGDIRVTN--RLLCAIE-SCKV-IAADGGICHASQLKVVPELWIGDFDSVDRTLLQQW   70 (222)
Q Consensus        10 ~~~~Ii~nG~~~~~~--~~~~~~~-~~~i-IavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~   70 (222)
                      .+++|++-++--..+  .+...++ ...+ |+|||+|+-+.+.|++|++||||+|||+.+++.--
T Consensus       181 R~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdgaAD~l~~~GykP~lIvGdpd~i~~~~Lr~g  245 (395)
T COG4825         181 RHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRKAGYKPQLIVGDPDQISTEALRCG  245 (395)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHCCCCCCEEECCCCHHHHHHHHCC
T ss_conf             57999738986688899988888750877997055078899747986446538012108888416


No 8  
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=98.09  E-value=5e-05  Score=51.97  Aligned_cols=59  Identities=24%  Similarity=0.317  Sum_probs=42.3

Q ss_pred             CCEEEEEEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHH
Q ss_conf             7406999987799981688985134949999188899998899734999721129988997
Q gi|254781122|r    8 KFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQ   68 (222)
Q Consensus         8 ~~~~~~Ii~nG~~~~~~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~   68 (222)
                      .+..++|+.+|+.- .+. ....+...+|+|||+++.+++.|+.||++++|+|-=-...++
T Consensus        51 ~g~~v~vvG~gP~l-~e~-~~~~~~~~vi~AdgA~~~l~~~gi~pDiiVTDlDgd~e~~~~  109 (232)
T COG1634          51 EGREVAVVGAGPSL-EEE-IKGLSSEVVIAADGAVSALLERGIRPDIIVTDLDGDPEDLLS  109 (232)
T ss_pred             CCCEEEEECCCCCH-HHH-HCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCHHHHHH
T ss_conf             58879997778767-666-334655359955689999998599775797059889889987


No 9  
>pfam01973 MAF_flag10 Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.
Probab=97.72  E-value=0.00086  Score=44.12  Aligned_cols=51  Identities=20%  Similarity=0.188  Sum_probs=37.3

Q ss_pred             EEEEEEECCCCCCCHH-HHHHHC-CCCEEEEEHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             0699998779998168-898513-494999918889999889973499972112
Q gi|254781122|r   10 IDFAILLNGDIRVTNR-LLCAIE-SCKVIAADGGICHASQLKVVPELWIGDFDS   61 (222)
Q Consensus        10 ~~~~Ii~nG~~~~~~~-~~~~~~-~~~iIavDgGa~~l~~~~i~Pd~iiGDfDS   61 (222)
                      .++.|++|||--.... .+...+ ...+||||+.+..|.+.||.||+++- .|.
T Consensus        25 ~~~~IvgaGPSL~~~i~~Lk~~~~~~~iia~~~a~~~L~~~gI~Pd~~v~-~D~   77 (169)
T pfam01973        25 KPAIIVGAGPSLDKHLPLLKKNRDKAVIIAADSALKALLKHGIKPDIVVS-LDR   77 (169)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCEEEEE-ECC
T ss_conf             71999956899899999999716983999966799999977998149999-748


No 10 
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80  E-value=0.0016  Score=42.34  Aligned_cols=53  Identities=13%  Similarity=0.058  Sum_probs=40.2

Q ss_pred             CCCCCEEEEEEECCCCCCC--HHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEE
Q ss_conf             5287406999987799981--6889851349499991888999988997349997
Q gi|254781122|r    5 HTNKFIDFAILLNGDIRVT--NRLLCAIESCKVIAADGGICHASQLKVVPELWIG   57 (222)
Q Consensus         5 ~~~~~~~~~Ii~nG~~~~~--~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiG   57 (222)
                      +.+..+.++|+.+||--..  +++....+.+.|+|||+.+..|.+.||+||+|+=
T Consensus       220 ~K~~~~~aiIVSaGPSL~Kql~lLK~y~~k~~IFcadsal~~L~k~GIkPDyVc~  274 (594)
T COG2604         220 RKNISEPAIIVSAGPSLEKQLPLLKKYQDKATIFCADSALPILAKHGIKPDYVCS  274 (594)
T ss_pred             HCCCCCCEEEECCCCCHHHCCHHHHHHCCCEEEEECCCCCHHHHHCCCCCCEEEE
T ss_conf             3378885499807867444368888605553999889754579867999776998


No 11 
>PRK03202 6-phosphofructokinase; Provisional
Probab=84.27  E-value=3.4  Score=21.33  Aligned_cols=94  Identities=19%  Similarity=0.244  Sum_probs=62.6

Q ss_pred             CCEEEEEEECC-CCCCCHHH-----HHHH-CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC-CC----E
Q ss_conf             74069999877-99981688-----9851-349499991888999988997349997211299889974031-88----5
Q gi|254781122|r    8 KFIDFAILLNG-DIRVTNRL-----LCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS-IK----R   75 (222)
Q Consensus         8 ~~~~~~Ii~nG-~~~~~~~~-----~~~~-~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~-~~----~   75 (222)
                      .|+|++|+..| +.|.-+..     .... ....++++=.|..=|++..+.         .++.+..+.+.. -+    .
T Consensus         1 ~~kriaIltsGG~~pGmNa~ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~---------~L~~~~v~~i~~~GGt~Lgt   71 (323)
T PRK03202          1 MMKKIGVLTSGGDAPGMNAAIRGVVRTAISEGLEVYGIYNGYLGLLEGDII---------DLDRASVSDLINRGGTALGS   71 (323)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCEE---------ECCHHHHHHHHHCCCCEEEE
T ss_conf             986699993688867789999999999997899999991677886489857---------69999999998479867420


Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             992056777948999999997599759999537878
Q gi|254781122|r   76 IFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQ  111 (222)
Q Consensus        76 i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~  111 (222)
                      -++++.++..+.+++++.+.+++.+-.+++|| .|.
T Consensus        72 sR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG-dgS  106 (323)
T PRK03202         72 ARYPEFKLEEGRAKAIENLKKHGIDALVVIGG-DGS  106 (323)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC-CHH
T ss_conf             48887778889999999999829999999379-469


No 12 
>KOG3043 consensus
Probab=67.14  E-value=3.4  Score=21.28  Aligned_cols=74  Identities=20%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             HHHHHHHCC---CCCEEEEECCCCCCHH--HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCEEEEEE-CCCCCCH
Q ss_conf             889999889---9734999721129988--997403188599205677794899999999759-97599995-3787812
Q gi|254781122|r   41 GICHASQLK---VVPELWIGDFDSVDRT--LLQQWSSIKRIFYPNDKDMADGEIAVHKALQSG-ARNIILVG-SISGQRF  113 (222)
Q Consensus        41 Ga~~l~~~~---i~Pd~iiGDfDSi~~~--~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~-~~~i~i~g-g~~G~R~  113 (222)
                      +|+.+-..|   ++||+.-||==|.+.+  ..+.+    +..+.+++-.-|+.+-++|++.++ .+.|=++| +++|++.
T Consensus        59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w----~~~~~~~~~~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~v  134 (242)
T KOG3043          59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEW----MKGHSPPKIWKDITAVVKWLKNHGDSKKIGVVGFCWGAKVV  134 (242)
T ss_pred             HHHHHHCCCCEEECCHHHCCCCCCCCCCHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEE
T ss_conf             99987228847972522058989988871353898----84479542106789999999972986156578885255078


Q ss_pred             HHHHHH
Q ss_conf             478899
Q gi|254781122|r  114 DYALQH  119 (222)
Q Consensus       114 DH~lan  119 (222)
                       +++.+
T Consensus       135 -v~~~~  139 (242)
T KOG3043         135 -VTLSA  139 (242)
T ss_pred             -EEEEC
T ss_conf             -88504


No 13 
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=65.05  E-value=8.2  Score=18.86  Aligned_cols=69  Identities=12%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             EEEECCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             99972112998899740318859920567779489999999975997599995378781247889999999886269819
Q gi|254781122|r   54 LWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINV  133 (222)
Q Consensus        54 ~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i  133 (222)
                      .||||-||+.+     |+..+.-.|| -.+..+..++|+.+.+.+|-=+++.=. ....++.++      .+|...-.+.
T Consensus         7 aVvGd~Dsvlg-----F~~lG~dvfp-v~~~eEa~~~l~~La~~~y~II~ITE~-~a~~i~~~i------~~y~~~~lPa   73 (104)
T PRK01395          7 GVIGDKDSILP-----FKALGFDVFP-VIEEQEARNTLRKLAMEDYAIIYITED-IAKDIPETI------ERYDNQVLPA   73 (104)
T ss_pred             EEECCHHHHHH-----HHHCCEEEEE-CCCHHHHHHHHHHHHHCCEEEEEEEHH-HHHHHHHHH------HHHHCCCCCE
T ss_conf             99868578788-----8865804785-488799999999998679279997299-984569999------9985257877


Q ss_pred             EE
Q ss_conf             99
Q gi|254781122|r  134 TL  135 (222)
Q Consensus       134 ~l  135 (222)
                      ++
T Consensus        74 II   75 (104)
T PRK01395         74 II   75 (104)
T ss_pred             EE
T ss_conf             99


No 14 
>pfam04914 DltD_C DltD C-terminal region. DltD is and integral membrane protein involved in the biosynthesis of D-alanyl-lipoteichoic acid. This is important in controlling the net ionic charge in lipoteichoic acid (LTA). This family is found in bacteria of the Bacillus/Clostridium group. DltD binds Dcp and ligates it with D-alanine. DltD does not ligate acyl carrier protein (ACP) with D-alanine. It also has thioesterase activity for mischarged D-alanyl-acyl carrier protein (ACP). DltD is thought to be responsible for discriminating between Dcp involved in the D-alanylation of LTA, and ACP involved in fatty acid biosynthesis. This family consists of the C-terminal region of DltD.
Probab=59.84  E-value=13  Score=17.69  Aligned_cols=41  Identities=17%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
Q ss_conf             99205677794899999999759975999953787812478
Q gi|254781122|r   76 IFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYA  116 (222)
Q Consensus        76 i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~  116 (222)
                      .-+....++.||++-|+.+.+.+.+..+++--..|.-.||+
T Consensus        27 ~~y~~SpEy~Dlql~L~~~~~~~~~vlfVi~PvNgkWydyt   67 (130)
T pfam04914        27 ESYTESPEYNDLQLVLDQFAKAGADVLFVIPPVNGKWYDYT   67 (130)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHC
T ss_conf             77113844068999999999849941898547770588870


No 15 
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=54.84  E-value=16  Score=16.95  Aligned_cols=11  Identities=9%  Similarity=0.123  Sum_probs=7.6

Q ss_pred             CEEEEEEECCC
Q ss_conf             40699998779
Q gi|254781122|r    9 FIDFAILLNGD   19 (222)
Q Consensus         9 ~~~~~Ii~nG~   19 (222)
                      |.+++|.+||.
T Consensus         1 mkkI~i~~GGT   11 (359)
T PRK00726          1 MKKILLAGGGT   11 (359)
T ss_pred             CCEEEEEECCC
T ss_conf             98899995886


No 16 
>PRK06932 glycerate dehydrogenase; Provisional
Probab=54.20  E-value=17  Score=16.89  Aligned_cols=112  Identities=15%  Similarity=0.001  Sum_probs=62.9

Q ss_pred             CEEEEEEECCCCCCCHHHHHHHCC-CCEEEEEHH-HHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEEE-ECCCCCCC
Q ss_conf             406999987799981688985134-949999188-899998899734999721129988997403188599-20567779
Q gi|254781122|r    9 FIDFAILLNGDIRVTNRLLCAIES-CKVIAADGG-ICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIF-YPNDKDMA   85 (222)
Q Consensus         9 ~~~~~Ii~nG~~~~~~~~~~~~~~-~~iIavDgG-a~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~-~~~dkD~T   85 (222)
                      ||+++++=....|....+. ..+. ..+..-|.- .+-+.+.=---|.+|.=.+.++.+.++..++.+.|. +-.-=|.-
T Consensus         1 ~mkiv~ld~~~~~~~~~~~-~~~~~~~~~~~~~t~~eel~e~i~dad~ii~~~~~i~~~vl~~ap~LK~I~~~g~G~D~I   79 (314)
T PRK06932          1 MMKIVFLDSTAIPKHISIP-RPSFEHEWTEYDHTSADQTIERAKDADIVITSKVIFSRETLQQLPKLKLIAITATGTNNV   79 (314)
T ss_pred             CCEEEEEECCCCCCCCCCC-CCCCCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCEEEEECCCCCCCC
T ss_conf             9659998544478877631-135685079789999899999857998999789863999995399980998898345647


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             4899999999759975999953787812478899999998
Q gi|254781122|r   86 DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATS  125 (222)
Q Consensus        86 D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~  125 (222)
                      |.+.|    .+++..-...-|..+..=-+|+++-+..+.+
T Consensus        80 D~~aa----~~~gI~V~n~pg~~~~~VAE~~i~liL~l~r  115 (314)
T PRK06932         80 DLVAA----KELGITVKNVTGYSSTTVPEHVLGLIFALKH  115 (314)
T ss_pred             CHHHH----HHCCEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             89999----7499799938986727899999999999997


No 17 
>pfam00365 PFK Phosphofructokinase.
Probab=51.56  E-value=19  Score=16.62  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=57.7

Q ss_pred             EEEEEEECC-CCCCCHHH-----HHHH-CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHC-CC----CEEE
Q ss_conf             069999877-99981688-----9851-34949999188899998899734999721129988997403-18----8599
Q gi|254781122|r   10 IDFAILLNG-DIRVTNRL-----LCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWS-SI----KRIF   77 (222)
Q Consensus        10 ~~~~Ii~nG-~~~~~~~~-----~~~~-~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~-~~----~~i~   77 (222)
                      +|+.|+..| +.|.-+..     .... ....++++-.|..-|++..+.         -++.+....+. .-    +.-+
T Consensus         1 KrI~IltsGG~~pG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~---------~l~~~~v~~~~~~gGt~LgtsR   71 (279)
T pfam00365         1 KKIGVLTSGGDAPGMNAAIRAVVRSAIAEGLEVYGIYEGYAGLVAGNIK---------QLDWESVSDIIQRGGTFIGSAR   71 (279)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEE---------ECCHHHHHHHHHCCCCCCCCCC
T ss_conf             9599990788866789999999999987799999990567788269824---------0988889889965984124667


Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             2056777948999999997599759999537878
Q gi|254781122|r   78 YPNDKDMADGEIAVHKALQSGARNIILVGSISGQ  111 (222)
Q Consensus        78 ~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~  111 (222)
                      +++.++.-+.+++++.+.+++.+-.+++|| .|.
T Consensus        72 ~~~~~~~~~~~~~~~~l~~~~Id~li~IGG-d~S  104 (279)
T pfam00365        72 CPEFREREGRLKAAENLKKHGIDALVVIGG-DGS  104 (279)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEEECC-CHH
T ss_conf             775545667999999999848997999669-568


No 18 
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=51.52  E-value=19  Score=16.62  Aligned_cols=11  Identities=9%  Similarity=0.120  Sum_probs=6.5

Q ss_pred             CEEEEEEECCC
Q ss_conf             40699998779
Q gi|254781122|r    9 FIDFAILLNGD   19 (222)
Q Consensus         9 ~~~~~Ii~nG~   19 (222)
                      |.+++|.+||.
T Consensus         1 MkkIii~~GGT   11 (352)
T PRK12446          1 MKKIVFTGGGS   11 (352)
T ss_pred             CCEEEEEECCC
T ss_conf             98799995875


No 19 
>KOG2724 consensus
Probab=49.97  E-value=16  Score=17.01  Aligned_cols=77  Identities=21%  Similarity=0.266  Sum_probs=50.2

Q ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEE
Q ss_conf             89974031885992056777948999999997599759999537878124788999999988626981999948918999
Q gi|254781122|r   65 TLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFI  144 (222)
Q Consensus        65 ~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~  144 (222)
                      |...+|.+.-.+.+.-+|+++|.-..-.++.-..- ..+-+   . -|.|-.++||++-. ...+++++.-...+++..+
T Consensus       379 edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~-~k~ql---L-vradtnlGnilLN~-Ll~kgMkctr~gknnvlIv  452 (487)
T KOG2724         379 EDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDR-GKFQL---L-VRADTNLGNILLNS-LLNKGMKCTRVGKNNVLIV  452 (487)
T ss_pred             CCCCHHCCCCCEEEEECCCCCCCCCCEEECCCCCC-CCEEE---E-EHHCCCHHHHHHHH-HHCCCCCCEECCCCCEEEE
T ss_conf             75410014542378734410115543120342546-51246---5-32004334789987-6137886422167745899


Q ss_pred             EEC
Q ss_conf             967
Q gi|254781122|r  145 LVP  147 (222)
Q Consensus       145 l~~  147 (222)
                      +.+
T Consensus       453 cvp  455 (487)
T KOG2724         453 CVP  455 (487)
T ss_pred             EEC
T ss_conf             708


No 20 
>KOG0228 consensus
Probab=48.27  E-value=8.8  Score=18.68  Aligned_cols=34  Identities=12%  Similarity=0.277  Sum_probs=23.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf             9734999721129988997403188599205677794899999999
Q gi|254781122|r   50 VVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKAL   95 (222)
Q Consensus        50 i~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~   95 (222)
                      ..-.+.||++|..+.            .+.||..++|.+.++++=.
T Consensus       277 ~~d~Y~IG~yd~~~~------------~fvpd~~~~~~~~dlr~Dy  310 (571)
T KOG0228         277 SNDQYFIGTYDGEKD------------TFVPDDGFSRVSVDLRYDY  310 (571)
T ss_pred             EEEEEEEECCCCCCC------------EEECCCCCCCCCCCCCCCC
T ss_conf             057899861468753------------4613688533432246430


No 21 
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828    6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=47.72  E-value=19  Score=16.60  Aligned_cols=69  Identities=23%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             CEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEE----EECCCCCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             4999918889999889973499972112998899740318859----920567779489999999975997599995378
Q gi|254781122|r   34 KVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRI----FYPNDKDMADGEIAVHKALQSGARNIILVGSIS  109 (222)
Q Consensus        34 ~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i----~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~  109 (222)
                      .++++=.|..=|.+-.+.|      |+|-.-  .+....-+.+    |+|.=|..-==|||++.+++++.+..|++|| -
T Consensus        31 EVyG~~~GY~GLi~g~i~~------l~~~~V--~~Ii~~GGT~L~tAR~~EFK~~evR~kA~~nLK~~GI~~LVViGG-D  101 (302)
T TIGR02482        31 EVYGIRRGYKGLINGKIVP------LKSKAV--SGIISKGGTILGTARCPEFKTEEVREKAVENLKKLGIEALVVIGG-D  101 (302)
T ss_pred             EEEEEECCCCCCCCCEEEC------CCCCCH--HCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECC-C
T ss_conf             0689873542130441342------466440--010015883331147854568789999999988748866899868-4


Q ss_pred             CC
Q ss_conf             78
Q gi|254781122|r  110 GQ  111 (222)
Q Consensus       110 G~  111 (222)
                      |+
T Consensus       102 GS  103 (302)
T TIGR02482       102 GS  103 (302)
T ss_pred             HH
T ss_conf             40


No 22 
>cd01144 BtuF Cobalamin binding protein BtuF.  These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.21  E-value=22  Score=16.20  Aligned_cols=63  Identities=11%  Similarity=0.096  Sum_probs=32.8

Q ss_pred             CCCEEEEEHHHHHHHH------------------CCCCCEEEEECCCCCCHHHHHHHCCCCE-EEECCCCCCCHHHHHHH
Q ss_conf             4949999188899998------------------8997349997211299889974031885-99205677794899999
Q gi|254781122|r   32 SCKVIAADGGICHASQ------------------LKVVPELWIGDFDSVDRTLLQQWSSIKR-IFYPNDKDMADGEIAVH   92 (222)
Q Consensus        32 ~~~iIavDgGa~~l~~------------------~~i~Pd~iiGDfDSi~~~~~~~~~~~~~-i~~~~dkD~TD~ekAL~   92 (222)
                      .+.++|+|.-+.+--+                  ..+.||+||+.-..-.++..+.++..+. +.....++..|....++
T Consensus        20 ~d~iVGv~~~~~~p~~~~~~p~vG~~~~p~~E~I~~L~PDLVi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~   99 (245)
T cd01144          20 GDQLVGVTDYCDYPPEAKKLPRVGGFYQLDLERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIR   99 (245)
T ss_pred             CCCEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf             98079985788994887148833788899999995259964774268776889998760497699848999999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254781122|r   93 KA   94 (222)
Q Consensus        93 ~~   94 (222)
                      .+
T Consensus       100 ~l  101 (245)
T cd01144         100 RL  101 (245)
T ss_pred             HH
T ss_conf             99


No 23 
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=46.90  E-value=22  Score=16.17  Aligned_cols=85  Identities=18%  Similarity=0.146  Sum_probs=46.4

Q ss_pred             HHHCC-CCCEEEEECCCCCCHHH--HHHH---C-CCCEEE---ECCCCCCCHHHHHHHHHH----HCCCCEEEEEECCCC
Q ss_conf             99889-97349997211299889--9740---3-188599---205677794899999999----759975999953787
Q gi|254781122|r   45 ASQLK-VVPELWIGDFDSVDRTL--LQQW---S-SIKRIF---YPNDKDMADGEIAVHKAL----QSGARNIILVGSISG  110 (222)
Q Consensus        45 l~~~~-i~Pd~iiGDfDSi~~~~--~~~~---~-~~~~i~---~~~dkD~TD~ekAL~~~~----~~~~~~i~i~gg~~G  110 (222)
                      +..++ +.|+.++=++-++.+-.  +|..   + +..+++   |.||=    +||+|..+.    +......+++.|.+|
T Consensus       312 ~~~~gg~~~~~~~~~l~~~~gv~GRmE~v~~~~~~f~V~VDYAHTPDa----Lek~L~~lr~~~~~~~~g~L~~vFGcGG  387 (494)
T TIGR01085       312 LLHLGGIDLEDIVAALEKLRGVPGRMELVDGGQQKFLVIVDYAHTPDA----LEKVLRTLRAIKLKHKKGRLIVVFGCGG  387 (494)
T ss_pred             HHHHCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEEECCCHHH----HHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             997338889999989873489987312302789996079971488058----9999999999984258982799981578


Q ss_pred             CCHHH----HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             81247----889999999886269819999489
Q gi|254781122|r  111 QRFDY----ALQHITLATSLKKKNINVTLTSGI  139 (222)
Q Consensus       111 ~R~DH----~lani~~L~~~~~~~~~i~l~~~~  139 (222)
                      .| |-    .|+.|.  .+|+.   .+++.+|+
T Consensus       388 dR-Dr~KRplMG~iA--~~~AD---~~ilT~DN  414 (494)
T TIGR01085       388 DR-DRGKRPLMGAIA--EQLAD---LIILTSDN  414 (494)
T ss_pred             CC-CCCCCHHHHHHH--HHHCC---EEEEECCC
T ss_conf             99-844575899999--98298---68983688


No 24 
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=44.09  E-value=24  Score=15.89  Aligned_cols=64  Identities=19%  Similarity=0.152  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHCCCCE----EEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             11299889974031885----9920567779489999999975997599995378781247889999999
Q gi|254781122|r   59 FDSVDRTLLQQWSSIKR----IFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLAT  124 (222)
Q Consensus        59 fDSi~~~~~~~~~~~~~----i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~  124 (222)
                      .||-.+-..++.+..+.    ....+ -|....+.+++.+.+. ++-++..||.+-++-|++-..+.-+.
T Consensus        16 ~d~n~~~l~~~l~~~G~~~~~~~~v~-Dd~~~i~~~l~~~~~~-~DlIittGG~g~g~~D~t~~al~~~~   83 (135)
T smart00852       16 YDSNGPALAELLTELGIEVTRYVIVP-DDKEAIKEALREALER-ADLVITTGGTGPGPDDVTPEAVAEAL   83 (135)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEEC-CCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCHHHHHHHHC
T ss_conf             32589999999998899899987989-9999999999998414-89999828878999865899999973


No 25 
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=42.66  E-value=25  Score=15.75  Aligned_cols=49  Identities=16%  Similarity=0.306  Sum_probs=30.0

Q ss_pred             HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCHHHHHHH
Q ss_conf             97403188599205677794899999999759975999953787-812478899
Q gi|254781122|r   67 LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISG-QRFDYALQH  119 (222)
Q Consensus        67 ~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G-~R~DH~lan  119 (222)
                      ++|- +.+....+|||..+|  .+++.+.+.+.+.+. +||-++ --+|.++..
T Consensus         4 ~~wr-~~H~~liDPdk~~~~--~~~~~~~~sgtDaI~-VGGS~~~~~~d~~v~~   53 (231)
T pfam01884         4 LEWR-KVHLTLLDPDETNPE--EIIEIVAESGTDAIM-IGGSTGGVTLDNVVRL   53 (231)
T ss_pred             HHHH-CCCEEEECCCCCCCH--HHHHHHHHCCCCEEE-ECCCCCCCCHHHHHHH
T ss_conf             6431-063688789999969--999999974999999-8898888568999999


No 26 
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=42.12  E-value=26  Score=15.70  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=17.4

Q ss_pred             CCCCHHHHHHHHHHHCCCCE--EEEEECCCCCCHHHHHH
Q ss_conf             77794899999999759975--99995378781247889
Q gi|254781122|r   82 KDMADGEIAVHKALQSGARN--IILVGSISGQRFDYALQ  118 (222)
Q Consensus        82 kD~TD~ekAL~~~~~~~~~~--i~i~gg~~G~R~DH~la  118 (222)
                      +--=.+-+||+.+++.+++.  -+.+.| ||| +-|.|.
T Consensus       308 ~RC~~LGqAIrrAIeSy~eD~L~V~I~G-TGG-lSHQL~  344 (444)
T PRK13372        308 RRCYELGQAIRRAIDKWDADPLNVQIWG-TGG-MSHQLQ  344 (444)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCC-CCCCCC
T ss_conf             8899999999999961785352599994-576-321037


No 27 
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=41.27  E-value=27  Score=15.62  Aligned_cols=112  Identities=11%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             CEEEEEE-ECCCCCC-CHHH---HHHH----CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCC---EE
Q ss_conf             4069999-8779998-1688---9851----34949999188899998899734999721129988997403188---59
Q gi|254781122|r    9 FIDFAIL-LNGDIRV-TNRL---LCAI----ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIK---RI   76 (222)
Q Consensus         9 ~~~~~Ii-~nG~~~~-~~~~---~~~~----~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~---~i   76 (222)
                      -.|+-|+ .||+.|. ++.+   ...+    ....+++-=||..-+.+...+         -++++....|.+.+   .+
T Consensus        72 plriGvvlsGgqAPGghNVI~Gl~d~lk~~n~~s~l~GF~~G~~Gl~~~~~~---------elt~~~i~~~rN~GGFd~l  142 (557)
T PRK07085         72 PLKVGVILSGGQAPGGHNVIAGLFDGLKKFNPDSKLFGFIGGPLGLLNNKYI---------ELTEEVIDEYRNTGGFDMI  142 (557)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEE---------EECHHHHHHHHCCCCCCEE
T ss_conf             8179999627999837888999999999768997799987770444069779---------9489999987628885243


Q ss_pred             EECCCCCCC--HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHCCCEEEE
Q ss_conf             920567779--48999999997599759999537878124788999999988-626981999
Q gi|254781122|r   77 FYPNDKDMA--DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSL-KKKNINVTL  135 (222)
Q Consensus        77 ~~~~dkD~T--D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~-~~~~~~i~l  135 (222)
                      ...++|=.|  ++++|++.|.+++.+-.+++||. ++     ..|-.+|..| .+++.++..
T Consensus       143 gs~r~ki~t~e~~~~~~~t~~~l~LdgLviiGGd-~s-----ntnAa~LAEyf~~~~~~t~V  198 (557)
T PRK07085        143 GSGRTKIETEEQKEACLQTVKKLKLDGLVIIGGD-DS-----NTNAAILAEYFAKHNCKTQV  198 (557)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC-CC-----HHHHHHHHHHHHHHCCCEEE
T ss_conf             0686545899999999999998599879997988-72-----16389999999982998379


No 28 
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=38.83  E-value=21  Score=16.23  Aligned_cols=24  Identities=25%  Similarity=0.130  Sum_probs=9.4

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             777948999999997599759999
Q gi|254781122|r   82 KDMADGEIAVHKALQSGARNIILV  105 (222)
Q Consensus        82 kD~TD~ekAL~~~~~~~~~~i~i~  105 (222)
                      .|.-|+|++++.....+...++.+
T Consensus       300 S~~ld~e~~i~~~~~~~~~~~~~F  323 (343)
T cd01567         300 SGDLDTEEAIELLLEQGASPNDAF  323 (343)
T ss_pred             ECCCCHHHHHHHHHHCCCCCCEEE
T ss_conf             899988999999997389875399


No 29 
>PRK01160 hypothetical protein; Provisional
Probab=38.65  E-value=29  Score=15.36  Aligned_cols=79  Identities=19%  Similarity=0.074  Sum_probs=46.9

Q ss_pred             CCCCCCCHH-HHHHHCCCCEEEE-EHHHHHHHHCCCCCEEEEECCCCCCHHHHHH----HCCCCEEEECCCCCCCHHHHH
Q ss_conf             779998168-8985134949999-1888999988997349997211299889974----031885992056777948999
Q gi|254781122|r   17 NGDIRVTNR-LLCAIESCKVIAA-DGGICHASQLKVVPELWIGDFDSVDRTLLQQ----WSSIKRIFYPNDKDMADGEIA   90 (222)
Q Consensus        17 nG~~~~~~~-~~~~~~~~~iIav-DgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~----~~~~~~i~~~~dkD~TD~ekA   90 (222)
                      -|+.+.+.. .....++.++|+| |-=..+++++|++|++.|=|.---..+....    .+..-.+.-|+-+=+-++-.|
T Consensus        24 ~g~~~~~~~~~~~~l~~~~iItVGDVtt~~ll~~g~~P~laIiDgkTkR~~~~~~~~~~~~~~l~v~NPaG~IT~~l~~~  103 (178)
T PRK01160         24 RGDIPEPYLKVRDILEKHPLITVGDVVTENLLRVGLKPFLAIYDLKTKRGEYKPEIFEHEEVSITVKNPPGTITLDLLRA  103 (178)
T ss_pred             CCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
T ss_conf             28985688999986438977997138789999779998788861702002676100235563699889997037999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254781122|r   91 VHKAL   95 (222)
Q Consensus        91 L~~~~   95 (222)
                      ++.+.
T Consensus       104 i~~A~  108 (178)
T PRK01160        104 IKKAY  108 (178)
T ss_pred             HHHHH
T ss_conf             99998


No 30 
>pfam12000 DUF3495 Domain of unknown function (DUF3495). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 170 amino acids in length. This domain is found associated with pfam00534. This domain has a single completely conserved residue G that may be functionally important.
Probab=37.68  E-value=29  Score=15.35  Aligned_cols=39  Identities=13%  Similarity=0.175  Sum_probs=23.9

Q ss_pred             EEEHHHHHHHHCCCCCEEEEECCC---CCCHHHHHHHCCCCEEE
Q ss_conf             991888999988997349997211---29988997403188599
Q gi|254781122|r   37 AADGGICHASQLKVVPELWIGDFD---SVDRTLLQQWSSIKRIF   77 (222)
Q Consensus        37 avDgGa~~l~~~~i~Pd~iiGDfD---Si~~~~~~~~~~~~~i~   77 (222)
                      +|=..+..|.+.|..||+|||--=   ++  -+++.+++.+.+.
T Consensus        52 av~~aa~~L~~~Gf~PDvIi~H~GWGe~L--fLkdv~P~a~li~   93 (172)
T pfam12000        52 AVARAARQLRAQGFRPDVIVAHPGWGETL--FLKDVWPDARLIG   93 (172)
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCCCHH--CHHHHCCCCCEEE
T ss_conf             99999999997499999898758764010--5777765887578


No 31 
>pfam10185 Mesd Chaperone for wingless signalling and trafficking of LDL receptor. Mesd is a family of highly conserved proteins found from nematodes to humans. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs). The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation).
Probab=37.61  E-value=25  Score=15.74  Aligned_cols=87  Identities=15%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             HHHHHHCCCCEEEEEECCCCCCHH---HHHHHHHH--HHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEEEEEC
Q ss_conf             999997599759999537878124---78899999--9988626981999948918999967956997059808999751
Q gi|254781122|r   91 VHKALQSGARNIILVGSISGQRFD---YALQHITL--ATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCL  165 (222)
Q Consensus        91 L~~~~~~~~~~i~i~gg~~G~R~D---H~lani~~--L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~g~~~Sl~p~  165 (222)
                      |-...++|-.-.+++ ...|.---   ..+..++-  |++. ...+...+++++-.||.+..|...++...    .|+.-
T Consensus        55 iLkmSKKGktLMmFv-~Vsgnpt~~Ete~it~lWQ~sL~Nn-hi~vqr~~vddnRaIFmfkDGs~AwE~Kd----fLv~Q  128 (158)
T pfam10185        55 LLKMSKKGRTLMTFV-TVSGNPTRKETEEITKLWQTSLWNN-HIDAQRFVVDDNRAIFMFKDGSQAWEAKD----FLVEQ  128 (158)
T ss_pred             HHHHHHCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHC-CEEEEEEEECCCEEEEEECCCCHHHHHHH----HHHCC
T ss_conf             997631597489999-6489977888999999999887525-43579998458648999637215451665----63156


Q ss_pred             CCCCEEEEECEEEECCCC
Q ss_conf             577625730416653787
Q gi|254781122|r  166 EDIENITITGAKYTLSHH  183 (222)
Q Consensus       166 ~~~~~vt~~Glky~L~~~  183 (222)
                      ..|..||++|-.||=.+.
T Consensus       129 ~rc~~VTiE~~~ypGk~~  146 (158)
T pfam10185       129 ERCAEVTIEGQEYPGKAK  146 (158)
T ss_pred             CCCCEEEEECCCCCCCCC
T ss_conf             532147762662578776


No 32 
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=37.49  E-value=30  Score=15.25  Aligned_cols=91  Identities=16%  Similarity=0.060  Sum_probs=56.8

Q ss_pred             CCCEEEEEEECC-CCCCCHHH-----H-HHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEE---
Q ss_conf             874069999877-99981688-----9-8513494999918889999889973499972112998899740318859---
Q gi|254781122|r    7 NKFIDFAILLNG-DIRVTNRL-----L-CAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRI---   76 (222)
Q Consensus         7 ~~~~~~~Ii~nG-~~~~~~~~-----~-~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i---   76 (222)
                      .+.||++|+-.| +.|--+..     . .......++++-.|..=|.+..+.| +   +..+++    .+...-+.+   
T Consensus       387 ~~~~rIaIlt~GgdapGMNAAiRA~Vr~~~~~G~~v~gI~~Gf~GL~~g~i~~-l---~~~~V~----g~~~~GGt~LgT  458 (762)
T cd00764         387 KTNLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVE-L---GWIDVG----GWTGRGGSELGT  458 (762)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEE-C---CHHHHC----CHHHCCCEEECC
T ss_conf             67706999856889614779999999999988999999925843674798677-7---845638----866468803265


Q ss_pred             -EECCCCCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             -92056777948999999997599759999537
Q gi|254781122|r   77 -FYPNDKDMADGEIAVHKALQSGARNIILVGSI  108 (222)
Q Consensus        77 -~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~  108 (222)
                       +..|   +.|.+++...+.+.+.+..+++||+
T Consensus       459 ~R~~p---~~~~~~~a~~l~~~~Id~LivIGG~  488 (762)
T cd00764         459 KRTLP---KKDLETIAYNFQKYGIDGLIIVGGF  488 (762)
T ss_pred             CCCCC---CCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             78897---3449999999998199889996680


No 33 
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=37.18  E-value=31  Score=15.22  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             EEEEEEECC-CCCCCHHH-----HHHH-CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH-CCCC----EEE
Q ss_conf             069999877-99981688-----9851-3494999918889999889973499972112998899740-3188----599
Q gi|254781122|r   10 IDFAILLNG-DIRVTNRL-----LCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQW-SSIK----RIF   77 (222)
Q Consensus        10 ~~~~Ii~nG-~~~~~~~~-----~~~~-~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~-~~~~----~i~   77 (222)
                      .|+.|+..| +.|.-+..     .... ....++++=.|..-|++..         +--++++....+ ..-+    .-+
T Consensus         1 KrIaIltsGGd~pGmNa~Ir~vv~~a~~~g~~v~Gi~~G~~GL~~~~---------~~~l~~~~v~~i~~~GGt~LgtsR   71 (317)
T cd00763           1 KRIGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGD---------IVPLDRYSVSDIINRGGTFLGSAR   71 (317)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCC---------EEECCHHHHHHHHHCCCCCCCCCC
T ss_conf             95999957888568899999999999878999999825677870798---------162899999879865995014677


Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             2056777948999999997599759999537878
Q gi|254781122|r   78 YPNDKDMADGEIAVHKALQSGARNIILVGSISGQ  111 (222)
Q Consensus        78 ~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~  111 (222)
                      +++.++.-+.+++++.+.+++.+-.+++|| .|.
T Consensus        72 ~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG-dgS  104 (317)
T cd00763          72 FPEFKDEEGQAKAIEQLKKHGIDALVVIGG-DGS  104 (317)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEEECC-CHH
T ss_conf             875455678999999999829998999569-458


No 34 
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183    Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) .   For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=36.96  E-value=31  Score=15.20  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=70.6

Q ss_pred             CCEEEE-EEECCCCC-CCHHHH---HHH----CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCC-E--
Q ss_conf             740699-99877999-816889---851----34949999188899998899734999721129988997403188-5--
Q gi|254781122|r    8 KFIDFA-ILLNGDIR-VTNRLL---CAI----ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIK-R--   75 (222)
Q Consensus         8 ~~~~~~-Ii~nG~~~-~~~~~~---~~~----~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~-~--   75 (222)
                      +-++|= |+.||+.| -|+.+.   ..+    .+++++|==||..=|++...+         -++.+....|++.+ .  
T Consensus        73 ~~l~~GviLSGGqAPGGHNVi~GLFD~lk~~np~SkLyGF~~Gp~GL~~~~~~---------elT~~~i~~YRN~GGFD~  143 (566)
T TIGR02477        73 QPLKVGVILSGGQAPGGHNVISGLFDALKKLNPESKLYGFLGGPEGLLDNNYV---------ELTKELIDEYRNTGGFDI  143 (566)
T ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE---------EECHHHHHCCCCCCCEEE
T ss_conf             87568898757989771146777899999737767200102074443158715---------763788722278877420


Q ss_pred             EEECCCCCCC--HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             9920567779--489999999975997599995378781247889999999886269819999
Q gi|254781122|r   76 IFYPNDKDMA--DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLT  136 (222)
Q Consensus        76 i~~~~dkD~T--D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~  136 (222)
                      +=.-.+|=.|  ++++|++.|.+++-+-.||+||- ++=-|=.+    |.-.|++++.++.++
T Consensus       144 iGSGRtKI~T~Eq~~~al~~~k~l~LdgLVIIGGD-dSNTnAA~----LAEyF~~~~~~t~vi  201 (566)
T TIGR02477       144 IGSGRTKIETEEQFAKALETAKKLKLDGLVIIGGD-DSNTNAAL----LAEYFAKKGLKTQVI  201 (566)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHH----HHHHHHHCCCCCEEE
T ss_conf             01685455688899999999876089648997479-86799999----999999738992278


No 35 
>pfam04439 Adenyl_transf Streptomycin adenylyltransferase. Also known as Aminoglycoside 6- adenylyltransferase (EC:2.7.7.-), this protein confers resistance to aminoglycoside antibiotics.
Probab=36.64  E-value=31  Score=15.16  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=56.2

Q ss_pred             EEEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCC---EEEECCCCCCCHHHH
Q ss_conf             99987799981688985134949999188899998899734999721129988997403188---599205677794899
Q gi|254781122|r   13 AILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIK---RIFYPNDKDMADGEI   89 (222)
Q Consensus        13 ~Ii~nG~~~~~~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~---~i~~~~dkD~TD~ek   89 (222)
                      +|+++|....++.....++.-.|                 -+++-|++|...+ ..|...-+   +..+|.+.+...-+ 
T Consensus        23 AV~l~GSR~n~n~~kD~fqDyDI-----------------vyvv~d~~~f~~d-~~Wi~~FG~~li~q~pe~~~~~~~~-   83 (282)
T pfam04439        23 AVALEGSRTNPNIPKDEFQDYDI-----------------VYVVEDIEPFISD-DSWLLKFGNPIMMQEPEDMELFPPD-   83 (282)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCE-----------------EEEECCCHHHHCC-CHHHHHHCHHHHHCCCCHHCCCCCC-
T ss_conf             99986788899999877766758-----------------9996783776038-3799986779881175000347865-


Q ss_pred             HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCEE
Q ss_conf             9999997599759999537878124788999999988626--9819999489189
Q gi|254781122|r   90 AVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKK--NINVTLTSGIEEV  142 (222)
Q Consensus        90 AL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~--~~~i~l~~~~~~i  142 (222)
                           ....+.-.+++  ..|.|+|-+|.-+.-+.++...  ..-.+|+|..+.+
T Consensus        84 -----~~~~~~yLmlF--eDGnrIDltl~~~~~l~~~~~~~d~l~~vLlDKd~~~  131 (282)
T pfam04439        84 -----LGKRYSYLMLF--EDGNKIDLTLIPKKELIRYVQDSDGLVKVLIDKDHLI  131 (282)
T ss_pred             -----CCCCEEEEEEE--CCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             -----68873489997--6885555896689999999854688728988478886


No 36 
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251   Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases.   This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=36.62  E-value=21  Score=16.32  Aligned_cols=111  Identities=12%  Similarity=0.013  Sum_probs=63.7

Q ss_pred             CCCEEEEEHHHHHHHHC----------CCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf             49499991888999988----------99734999721129988997403188599205677794899999999759975
Q gi|254781122|r   32 SCKVIAADGGICHASQL----------KVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARN  101 (222)
Q Consensus        32 ~~~iIavDgGa~~l~~~----------~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~  101 (222)
                      .+.|.|+|=........          +-.|.+.+|||-|++.......=....++|-|.+   |+.++|..+..+--.+
T Consensus        76 GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~~~G~fD~VV~mDvlIHYp~~---d~~~~l~~Laslt~~~  152 (224)
T TIGR02021        76 GAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESLELGKFDAVVAMDVLIHYPAE---DIAKALEHLASLTKER  152 (224)
T ss_pred             CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCCCEEEEEHHHHHCCHH---HHHHHHHHHHHHHCCC
T ss_conf             9868662376899999986210021016700354530444138985556752122320222---2799999988743586


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEE
Q ss_conf             999953787812478899999998862698199994891899996
Q gi|254781122|r  102 IILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILV  146 (222)
Q Consensus       102 i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~  146 (222)
                      +++-.| --.-+=..+-.|.-++-=.++...+.++.+.+.-+.+.
T Consensus       153 ~~ftfA-P~T~~l~~~~~IG~lFP~s~R~t~~~~h~~~~~~R~l~  196 (224)
T TIGR02021       153 VIFTFA-PKTAYLAFLKAIGELFPRSDRATAIYLHPEKDLERALG  196 (224)
T ss_pred             EEEEEC-CCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHH
T ss_conf             489867-87678999998510278898885152078603889976


No 37 
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=36.57  E-value=32  Score=15.16  Aligned_cols=97  Identities=20%  Similarity=0.181  Sum_probs=56.2

Q ss_pred             CEEEEEEECCCCCCCHHHHHHHCC-CCE--EEEEHHHH----------HHHHCCCCCEEEEECCCCCCHHHHHHHC--CC
Q ss_conf             406999987799981688985134-949--99918889----------9998899734999721129988997403--18
Q gi|254781122|r    9 FIDFAILLNGDIRVTNRLLCAIES-CKV--IAADGGIC----------HASQLKVVPELWIGDFDSVDRTLLQQWS--SI   73 (222)
Q Consensus         9 ~~~~~Ii~nG~~~~~~~~~~~~~~-~~i--IavDgGa~----------~l~~~~i~Pd~iiGDfDSi~~~~~~~~~--~~   73 (222)
                      |+++++++.|...+.-.+....+. ..+  |-.|=|-.          .+..+|+.++.|+ |+|.+..-......  +.
T Consensus         1 MkkavVLlSGGlDStt~L~~a~~~~~~v~alsfdYGQrh~~El~~A~~ia~~~gv~~h~vi-dl~~l~~~~~SaLt~~~i   79 (231)
T PRK11106          1 MKRAVVVFSGGQDSTTCLIQALQQYDEVHCITFDYGQRHRAEIDVARELALKLGARAHKVL-DVTLLNELAVSSLTRDSI   79 (231)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE-CCHHHHHHCCCCCCCCCC
T ss_conf             9808999078789999999999819949999877786719999999999998598400675-327777752356677787


Q ss_pred             C-----------EEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             8-----------599205677794899999999759975999953
Q gi|254781122|r   74 K-----------RIFYPNDKDMADGEIAVHKALQSGARNIILVGS  107 (222)
Q Consensus        74 ~-----------~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg  107 (222)
                      .           ...+-|--+.-=+..|.-|+...+++.+++ |.
T Consensus        80 ~vp~~~~~~~~~p~T~VP~RN~ifLsiAaa~Ae~~ga~~I~~-G~  123 (231)
T PRK11106         80 PVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVIT-GV  123 (231)
T ss_pred             CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEE-EC
T ss_conf             777765444578764671672999999999999859995998-04


No 38 
>pfam08538 DUF1749 Protein of unknown function (DUF1749). This is a plant and fungal family of unknown function. This family contains many hypothetical proteins.
Probab=36.26  E-value=32  Score=15.13  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=27.4

Q ss_pred             CCCCCCHHHHHHHHHHHC-----CCCEEEEEECCCCCCHH
Q ss_conf             567779489999999975-----99759999537878124
Q gi|254781122|r   80 NDKDMADGEIAVHKALQS-----GARNIILVGSISGQRFD  114 (222)
Q Consensus        80 ~dkD~TD~ekAL~~~~~~-----~~~~i~i~gg~~G~R~D  114 (222)
                      =++|..|.+.+++|+...     +...|++.|--|| -.|
T Consensus        84 L~~D~~Ei~~~v~Ylr~~~~~~~~~~kIVLMGHSTG-cQD  122 (303)
T pfam08538        84 LDRDDEEIQALVEYLRTTKGGTFGRRKIVLMGHSTG-SQD  122 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC-CHH
T ss_conf             330099999999999860567678862899845877-047


No 39 
>KOG4225 consensus
Probab=35.75  E-value=32  Score=15.07  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             ECCCEEEEEECCCE-EEEECCCEEEEEEECCCCCEEEE----ECEEEECCCCEECCCCCEEEEEE-ECCCEEEEEECCEE
Q ss_conf             48918999967956-99705980899975157762573----04166537878527875388499-84957999957909
Q gi|254781122|r  137 SGIEEVFILVPGKH-SFDLPENSVFSIVCLEDIENITI----TGAKYTLSHHSLSLGSSRAVSNV-VTKNLTIMLDQGLA  210 (222)
Q Consensus       137 ~~~~~i~~l~~g~~-~~~~~~g~~~Sl~p~~~~~~vt~----~Glky~L~~~~l~~~~~~~~SN~-~~~~~~I~~~~G~l  210 (222)
                      ...++|+++.+++- =.+..-.-+++|||..-+..++.    ..-+ +--...+..|..++.=|. ...+++.+.++|..
T Consensus       250 ~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~-~~P~q~~~~g~a~A~y~F~~~s~~Els~~kge~  328 (489)
T KOG4225         250 NKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPAR-PPPQQVLEQGEAIAKYNFNADSPVELSLRKGER  328 (489)
T ss_pred             CCCCEEEEEEECCCCEEEEEECCEECCEECHHEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCE
T ss_conf             7888899976024752101115621110010135347300137677-996555555530014787777750001036856


Q ss_pred             EEEECCCCCC
Q ss_conf             9997441002
Q gi|254781122|r  211 ILISRPYDLQ  220 (222)
Q Consensus       211 lvi~~~kd~~  220 (222)
                      +...+.-|.+
T Consensus       329 v~L~r~vd~n  338 (489)
T KOG4225         329 VTLTRQVDEN  338 (489)
T ss_pred             EEEEEECCCC
T ss_conf             7887741575


No 40 
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=35.50  E-value=33  Score=15.05  Aligned_cols=65  Identities=17%  Similarity=0.059  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHCCCC--EEEECCC-CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             1129988997403188--5992056-7779489999999975997599995378781247889999999
Q gi|254781122|r   59 FDSVDRTLLQQWSSIK--RIFYPND-KDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLAT  124 (222)
Q Consensus        59 fDSi~~~~~~~~~~~~--~i~~~~d-kD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~  124 (222)
                      .||-..-..+..+..+  ...+..- -|.-..+.+|+.+.+ .++-+++.||.+-++-|++-..+.-+.
T Consensus        15 ~dsn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~~DliittGG~g~g~~D~t~~al~~~~   82 (140)
T pfam00994        15 YDTNGPLLAALLREAGAEVIRYGIVPDDPEAIKEALAAAAD-EADVVITTGGTGPGPDDVTPEALAELG   82 (140)
T ss_pred             EEHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf             88699999999998799377998978899999999999732-699999878877898985599999985


No 41 
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=35.50  E-value=33  Score=15.05  Aligned_cols=64  Identities=17%  Similarity=0.107  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHCCCC--EEEE--CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             1129988997403188--5992--0567779489999999975997599995378781247889999999
Q gi|254781122|r   59 FDSVDRTLLQQWSSIK--RIFY--PNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLAT  124 (222)
Q Consensus        59 fDSi~~~~~~~~~~~~--~i~~--~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~  124 (222)
                      .||-.+-..+..+..+  ...+  -+| |...++.+++.+.+ .++-++..||.+-|+.||+...+.-+.
T Consensus        17 ~dsn~~~l~~~l~~~G~~v~~~~iv~D-d~~~i~~~l~~~~~-~~DlIIttGG~s~g~~D~t~~~l~~~g   84 (133)
T cd00758          17 EDTNGPALEALLEDLGCEVIYAGVVPD-DADSIRAALIEASR-EADLVLTTGGTGVGRRDVTPEALAELG   84 (133)
T ss_pred             EEHHHHHHHHHHHHCCCEEEEEEEECC-CHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCHHHHHHHHC
T ss_conf             973799999999988997989889897-99999999999861-499999938866798851899999853


No 42 
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463    These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=34.94  E-value=30  Score=15.25  Aligned_cols=83  Identities=19%  Similarity=0.292  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEE----CCCCCCH--HHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEE--
Q ss_conf             7779489999999975997599995----3787812--4788999999988626981999948918999967956997--
Q gi|254781122|r   82 KDMADGEIAVHKALQSGARNIILVG----SISGQRF--DYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFD--  153 (222)
Q Consensus        82 kD~TD~ekAL~~~~~~~~~~i~i~g----g~~G~R~--DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~--  153 (222)
                      .+..|-=+=++.+.++|+++|.++|    +.-|.++  ||....+.-|.+....  .+..+++=..|+|..+....|+  
T Consensus       184 r~~~~Il~Ev~~l~~~G~kEi~LLGQNVN~YRG~~frne~~~~~f~dLL~~l~r--rCe~~~~i~RIRFtsSHP~~~~D~  261 (456)
T TIGR01574       184 RPLDDILQEVQKLAEKGVKEITLLGQNVNAYRGKDFRNEGKTVDFADLLRELAR--RCEVKDGIERIRFTSSHPKDFDDD  261 (456)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEECHHHHHHHHHH--HCCHHHCCCCEEECCCCCCCCCHH
T ss_conf             574469999999986586487403653011158752258867366999999987--510221585113137878765446


Q ss_pred             -----ECCCEEEEEEECC
Q ss_conf             -----0598089997515
Q gi|254781122|r  154 -----LPENSVFSIVCLE  166 (222)
Q Consensus       154 -----~~~g~~~Sl~p~~  166 (222)
                           ...+..++++-+.
T Consensus       262 liev~a~~~~l~~~~HLP  279 (456)
T TIGR01574       262 LIEVLAKEPKLCKLLHLP  279 (456)
T ss_pred             HHHHHHCCCCEEEEECCC
T ss_conf             878873789466664375


No 43 
>pfam02568 ThiI Thiamine biosynthesis protein (ThiI). ThiI is required for thiazole synthesis, required for thiamine biosynthesis.
Probab=32.49  E-value=3.9  Score=20.93  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=82.1

Q ss_pred             EEEEEECCCCCCCHHHHHHH-CCCCEEEEE-----HHH-----------HHHHHC--CCCCEEEEECCCCCCHHHHHHHC
Q ss_conf             69999877999816889851-349499991-----888-----------999988--99734999721129988997403
Q gi|254781122|r   11 DFAILLNGDIRVTNRLLCAI-ESCKVIAAD-----GGI-----------CHASQL--KVVPELWIGDFDSVDRTLLQQWS   71 (222)
Q Consensus        11 ~~~Ii~nG~~~~~~~~~~~~-~~~~iIavD-----gGa-----------~~l~~~--~i~Pd~iiGDfDSi~~~~~~~~~   71 (222)
                      +++.++.|++.++-...... +...++++-     .+.           +.+.++  +..+.+.+=||--+-.+..+..+
T Consensus         5 k~l~LlSGGiDSpVAa~lmmkRG~~V~~vhf~~~p~~~~~~~~k~~~l~~~l~~y~~~~~~~l~vv~~~~~~~~i~~~~~   84 (197)
T pfam02568         5 KVLALLSGGIDSPVAAYLMMRRGCRVVALHFINEPGTSEEAIEKVRKLAELLAEYGTSCEGKLVVVDFTKVQKEIIEKAP   84 (197)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCC
T ss_conf             18988668712999999999879979999987999998999999999999999737887544999574999999996289


Q ss_pred             CC-CEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCEEEEEEC-
Q ss_conf             18-8599205677794899999999759975999953787812478899999998862698--1999948918999967-
Q gi|254781122|r   72 SI-KRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNI--NVTLTSGIEEVFILVP-  147 (222)
Q Consensus        72 ~~-~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~--~i~l~~~~~~i~~l~~-  147 (222)
                      .. ..+..   | .-=+.+|=+.+.+.+++-++ .|-..|---.+++.|+.++......-+  +.+-.|.++ |.-+.. 
T Consensus        85 ~~~~cv~c---K-r~M~r~A~~iA~~~ga~~IV-TGEsLGQVaSQTl~nl~~i~~~~~~pilRPLig~DK~E-Ii~~Ar~  158 (197)
T pfam02568        85 EKYRCVLC---K-RCMYRAAEKVAEEEGADALV-TGESLGQVASQTLDNLRVISAATNLPILRPLIGLDKEE-IINLAKE  158 (197)
T ss_pred             CCCEEHHH---H-HHHHHHHHHHHHHCCCCEEE-ECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHH-HHHHHHH
T ss_conf             87654569---9-99999999999984998998-47303121004531069998762485313434699999-9999999


Q ss_pred             -CCEEEEECCCEEEEEEECCCCCEEEE
Q ss_conf             -95699705980899975157762573
Q gi|254781122|r  148 -GKHSFDLPENSVFSIVCLEDIENITI  173 (222)
Q Consensus       148 -g~~~~~~~~g~~~Sl~p~~~~~~vt~  173 (222)
                       |++.+...+...|+++|-.+.+.-+.
T Consensus       159 IGt~~~s~~~~~~C~~~p~~P~t~~~~  185 (197)
T pfam02568       159 IGTYEISIEPYDCCSVFPKHPTTRAKP  185 (197)
T ss_pred             HCCHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf             486776628887642279989058799


No 44 
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=31.01  E-value=39  Score=14.59  Aligned_cols=17  Identities=35%  Similarity=0.532  Sum_probs=8.8

Q ss_pred             HHHHCCCCCEEEEECCC
Q ss_conf             99988997349997211
Q gi|254781122|r   44 HASQLKVVPELWIGDFD   60 (222)
Q Consensus        44 ~l~~~~i~Pd~iiGDfD   60 (222)
                      ++.++|..|-++|||+-
T Consensus        59 ~fq~~Gh~~i~lvGg~T   75 (402)
T PRK05912         59 RFQDLGHKPIFLIGDFT   75 (402)
T ss_pred             HHHHCCCCEEEEECCCC
T ss_conf             99986996499967752


No 45 
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=29.90  E-value=40  Score=14.47  Aligned_cols=113  Identities=12%  Similarity=0.143  Sum_probs=67.8

Q ss_pred             CCEEEEE-EECCCCCC-CHHH---HHHH----CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCC---E
Q ss_conf             7406999-98779998-1688---9851----34949999188899998899734999721129988997403188---5
Q gi|254781122|r    8 KFIDFAI-LLNGDIRV-TNRL---LCAI----ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIK---R   75 (222)
Q Consensus         8 ~~~~~~I-i~nG~~~~-~~~~---~~~~----~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~---~   75 (222)
                      .-.|+-| +.||+.|. ++.+   ...+    .+..+++-=||..=+.+...+         -++++....|++.+   .
T Consensus        71 ~~l~vGvvlsGgqAPGGHNVI~Gl~d~lk~~n~~s~l~GF~~Gp~Gl~~~~~~---------eit~~~i~~yrN~GGfdm  141 (550)
T cd00765          71 PKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYI---------ELNAEYIQPYRNTGGFDM  141 (550)
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEE---------EECHHHHHHHHCCCCCCC
T ss_conf             87189999857999951574987999999649887799975784232069679---------808999987651888510


Q ss_pred             EEECCCC--CCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-HCCCEEEE
Q ss_conf             9920567--779489999999975997599995378781247889999999886-26981999
Q gi|254781122|r   76 IFYPNDK--DMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLK-KKNINVTL  135 (222)
Q Consensus        76 i~~~~dk--D~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~-~~~~~i~l  135 (222)
                      +...++|  ..-++++|++.|.+++-+-.+++||. ++     -.|-.+|+.|- +.+.++..
T Consensus       142 i~sgr~ki~t~eq~~~~~~~~~~l~LdgLVIiGGd-dS-----nTnaa~LAEyf~~~~~~t~V  198 (550)
T cd00765         142 ICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGD-DS-----NTNAALLAENFRSKGLKTRV  198 (550)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC-CC-----HHHHHHHHHHHHHCCCCCEE
T ss_conf             36885624899999999999998599879996898-73-----48799999999964999559


No 46 
>PRK08349 hypothetical protein; Validated
Probab=29.16  E-value=7.4  Score=19.15  Aligned_cols=159  Identities=14%  Similarity=0.117  Sum_probs=81.9

Q ss_pred             EEEEEEECCCCCCCHHHHHHH-CCCCEEEE--EHHHHH----------HHHC--CCCCEEEEECCCCCCHHHHHHHCCCC
Q ss_conf             069999877999816889851-34949999--188899----------9988--99734999721129988997403188
Q gi|254781122|r   10 IDFAILLNGDIRVTNRLLCAI-ESCKVIAA--DGGICH----------ASQL--KVVPELWIGDFDSVDRTLLQQWSSIK   74 (222)
Q Consensus        10 ~~~~Ii~nG~~~~~~~~~~~~-~~~~iIav--DgGa~~----------l~~~--~i~Pd~iiGDfDSi~~~~~~~~~~~~   74 (222)
                      |+++.++.|++.++-.-.... +...++++  +.|-..          +.++  +-..++.+=||--+..+..+....  
T Consensus         1 ~Kvl~LlSGGiDSPVAa~~mmKRG~~V~~lhf~~~~~~~~kv~~~~~~L~~~~~~~~~~~~iv~~~~~~~~i~~~i~~--   78 (198)
T PRK08349          1 MKVVALLSSGIDSPVAIYLMLSRGVEIYPLHFRQDEKKEHKARELVEILQEIHGGKVKDPVIVDAYEVQGPVFEKLRE--   78 (198)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH--
T ss_conf             949999658843899999999779979999863877889999999999999708887528997722532899999986--


Q ss_pred             EEEECCCCCCCH------HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCEEEEEE
Q ss_conf             599205677794------899999999759975999953787812478899999998862698--199994891899996
Q gi|254781122|r   75 RIFYPNDKDMAD------GEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNI--NVTLTSGIEEVFILV  146 (222)
Q Consensus        75 ~i~~~~dkD~TD------~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~--~i~l~~~~~~i~~l~  146 (222)
                         ..+++..+=      .-.|=+.+.+.++..++ .|=..|-=--||+.|+.+.....+.-+  +.+-.|.++.|-.-.
T Consensus        79 ---~~~~~~~~vl~rr~M~riA~~iA~~~g~~aiv-TGEsLGQVASQTl~NL~~i~~~~~~pVlRPLig~DK~EII~~Ar  154 (198)
T PRK08349         79 ---IGKEKWTCLFCKYTMYRVAERYAHEIGAKAIV-TGDSLGQVASQTLDNLMVISTATDLPILRPLIGLDKEEIVRIAK  154 (198)
T ss_pred             ---CCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             ---07765130999999999999999985998898-45216788899998899998750676647766799899999999


Q ss_pred             C-CCEEEEECCCEEEEEEECCCCCEEEEE
Q ss_conf             7-956997059808999751577625730
Q gi|254781122|r  147 P-GKHSFDLPENSVFSIVCLEDIENITIT  174 (222)
Q Consensus       147 ~-g~~~~~~~~g~~~Sl~p~~~~~~vt~~  174 (222)
                      . |++.+...+...|+++|-.+++.-+.+
T Consensus       155 ~IGTye~S~~~~~cC~~~pk~P~t~~~~~  183 (198)
T PRK08349        155 EIGTFEISIEPEPPCPFVPKFPVVRAGLG  183 (198)
T ss_pred             HHCCHHHHCCCCCCCEEECCCCCCCCCHH
T ss_conf             81955343289977441089882688999


No 47 
>TIGR00338 serB phosphoserine phosphatase SerB; InterPro: IPR004469 Phosphoserine phosphatase (SerB), (3.1.3.3 from EC), also known as O-phosphoserine phosphohydrolase, is involved in both serine and glycine biosynthesis. It catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate, which is the last step in the biosynthesis of serine from carbohydrates. The reaction proceeds via the formation of a phosphoryl-enzyme intermediate. It acts as a homodimer, and requires magnesium as a cofactor.; GO: 0004647 phosphoserine phosphatase activity, 0006564 L-serine biosynthetic process.
Probab=28.41  E-value=13  Score=17.62  Aligned_cols=49  Identities=16%  Similarity=0.110  Sum_probs=34.6

Q ss_pred             HHCCCCCEEEEECCCCC--CHHHHHHHCC-CC------EEEECCCCCCCHHHHHHHHH
Q ss_conf             98899734999721129--9889974031-88------59920567779489999999
Q gi|254781122|r   46 SQLKVVPELWIGDFDSV--DRTLLQQWSS-IK------RIFYPNDKDMADGEIAVHKA   94 (222)
Q Consensus        46 ~~~~i~Pd~iiGDfDSi--~~~~~~~~~~-~~------~i~~~~dkD~TD~ekAL~~~   94 (222)
                      .++...+.++|=||||.  ..|..+...+ .+      .+-....+-.+||+.||+.=
T Consensus         8 ~~~~~~~~L~VFD~DSTli~~E~IDeiAk~AGVee~V~~iTerAM~Ge~dF~~SLr~R   65 (223)
T TIGR00338         8 SKLLRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKESLRER   65 (223)
T ss_pred             HHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             2445205726860227877542588898751845789999999718998888999999


No 48 
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and  PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=27.23  E-value=45  Score=14.17  Aligned_cols=102  Identities=15%  Similarity=0.121  Sum_probs=62.1

Q ss_pred             EEEEEEECCC-CCCCHHH-----HHHH-CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHC-CCC----EEE
Q ss_conf             0699998779-9981688-----9851-34949999188899998899734999721129988997403-188----599
Q gi|254781122|r   10 IDFAILLNGD-IRVTNRL-----LCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWS-SIK----RIF   77 (222)
Q Consensus        10 ~~~~Ii~nG~-~~~~~~~-----~~~~-~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~-~~~----~i~   77 (222)
                      .|+.|+..|. .|.-+..     .... ....++++=.|..=|++..+.+         ++.+..+.+. .-+    .-+
T Consensus         1 krIaIltsGG~~pGmNa~ir~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~---------L~~~~v~~i~~~GGt~LgssR   71 (338)
T cd00363           1 KKIGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEGDIKE---------LDWESVSDIINRGGTIIGSAR   71 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEE---------CCHHHHHHHHHCCCEECCCCC
T ss_conf             95999868888668889999999999977999999825777770798162---------999999879856981316767


Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             2056777948999999997599759999537878124788999999988
Q gi|254781122|r   78 YPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSL  126 (222)
Q Consensus        78 ~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~  126 (222)
                      +++.++..+.+++++.+.+++.+-.+++|| .|     ++.....|.++
T Consensus        72 ~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG-dg-----S~~~a~~L~~~  114 (338)
T cd00363          72 CKEFRTEEGRAKAAENLKKHGIDALVVIGG-DG-----SYTGADLLTEE  114 (338)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEECC-CH-----HHHHHHHHHHH
T ss_conf             876678677899999999829998999789-26-----99999999998


No 49 
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=26.43  E-value=46  Score=14.08  Aligned_cols=10  Identities=20%  Similarity=0.039  Sum_probs=4.1

Q ss_pred             CCHHHHHHHC
Q ss_conf             8168898513
Q gi|254781122|r   22 VTNRLLCAIE   31 (222)
Q Consensus        22 ~~~~~~~~~~   31 (222)
                      .++++.+.++
T Consensus        48 Gh~fi~~Ai~   57 (481)
T PRK00139         48 GRDFIAQAIA   57 (481)
T ss_pred             HHHHHHHHHH
T ss_conf             8999999998


No 50 
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=25.79  E-value=48  Score=14.01  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=42.8

Q ss_pred             CCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEEH---------------------HHHHHHHCCCCCEEEEECC
Q ss_conf             9754528740699998779998168898513494999918---------------------8899998899734999721
Q gi|254781122|r    1 MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADG---------------------GICHASQLKVVPELWIGDF   59 (222)
Q Consensus         1 ~~~~~~~~~~~~~Ii~nG~~~~~~~~~~~~~~~~iIavDg---------------------Ga~~l~~~~i~Pd~iiGDf   59 (222)
                      |+.|-+....++.|+.+|.+-.--.....--.-.++++|.                     .+...+-....+|+|.=.|
T Consensus         4 ~~~p~~~~~kkIgIlGgGQLg~Mla~aA~~LG~~vivld~~~d~PA~~vAd~~~~~~~~D~~al~~~a~~~~~DvvT~E~   83 (395)
T PRK09288          4 LGTPLSPSATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDLIVPEI   83 (395)
T ss_pred             CCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf             56898999888999898899999999999879989998489959446728657977878999999999983899899785


Q ss_pred             CCCCHHHHHHHCCCCEEEEC
Q ss_conf             12998899740318859920
Q gi|254781122|r   60 DSVDRTLLQQWSSIKRIFYP   79 (222)
Q Consensus        60 DSi~~~~~~~~~~~~~i~~~   79 (222)
                      .-+..+.++..++.+.-++|
T Consensus        84 E~V~~~~L~~le~~G~~v~P  103 (395)
T PRK09288         84 EAIATDALVELEAEGFNVVP  103 (395)
T ss_pred             CCCCHHHHHHHHHCCCEECC
T ss_conf             44788999999868933679


No 51 
>pfam01075 Glyco_transf_9 Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
Probab=25.62  E-value=48  Score=13.99  Aligned_cols=30  Identities=27%  Similarity=0.184  Sum_probs=12.1

Q ss_pred             EEEEEEECCCCCCCHHHHHHHCCCCEEEEEH
Q ss_conf             0699998779998168898513494999918
Q gi|254781122|r   10 IDFAILLNGDIRVTNRLLCAIESCKVIAADG   40 (222)
Q Consensus        10 ~~~~Ii~nG~~~~~~~~~~~~~~~~iIavDg   40 (222)
                      ..++|.+-+...+ .++.........|+-+.
T Consensus        13 yD~vidl~~s~rs-~~~~~~~~a~~riG~~~   42 (249)
T pfam01075        13 YDAVIDLQGLFKS-ALLPRFLGAPVRIGYDG   42 (249)
T ss_pred             CCEEEECCCCHHH-HHHHHHHCCCEEEEECC
T ss_conf             8999989898499-99999849983996378


No 52 
>PRK10376 putative oxidoreductase; Provisional
Probab=25.47  E-value=48  Score=13.97  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=10.2

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             99999999759975999953787
Q gi|254781122|r   88 EIAVHKALQSGARNIILVGSISG  110 (222)
Q Consensus        88 ekAL~~~~~~~~~~i~i~gg~~G  110 (222)
                      -.||..+++.|  .+--+| .+.
T Consensus       148 ~~al~~l~~~G--kir~iG-vSN  167 (291)
T PRK10376        148 LTVLAELQRQG--LVRHIG-LSN  167 (291)
T ss_pred             HHHHHHHHHCC--CEEEEE-ECC
T ss_conf             99999999889--877998-458


No 53 
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.07  E-value=49  Score=13.92  Aligned_cols=75  Identities=15%  Similarity=0.051  Sum_probs=49.4

Q ss_pred             EHHHHHHHHCC---CCCEEEEECCCCCCHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHHHHCC---CCEEEEEECCCCC
Q ss_conf             18889999889---9734999721129988997-403188599205677794899999999759---9759999537878
Q gi|254781122|r   39 DGGICHASQLK---VVPELWIGDFDSVDRTLLQ-QWSSIKRIFYPNDKDMADGEIAVHKALQSG---ARNIILVGSISGQ  111 (222)
Q Consensus        39 DgGa~~l~~~~---i~Pd~iiGDfDSi~~~~~~-~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~---~~~i~i~gg~~G~  111 (222)
                      ..-+.++-+.|   +.||+.-...++...+... ........+.++.+-..|.+.++.|+..+.   ...+.++|=..||
T Consensus        44 ~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG  123 (236)
T COG0412          44 RDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGG  123 (236)
T ss_pred             HHHHHHHHHCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCH
T ss_conf             99999999589869731544468888765641898751232047878866459999999986668888648999988037


Q ss_pred             CH
Q ss_conf             12
Q gi|254781122|r  112 RF  113 (222)
Q Consensus       112 R~  113 (222)
                      ++
T Consensus       124 ~~  125 (236)
T COG0412         124 GL  125 (236)
T ss_pred             HH
T ss_conf             99


No 54 
>TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820    This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity.
Probab=25.00  E-value=32  Score=15.12  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             EEEEEHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99991888999988997349997211
Q gi|254781122|r   35 VIAADGGICHASQLKVVPELWIGDFD   60 (222)
Q Consensus        35 iIavDgGa~~l~~~~i~Pd~iiGDfD   60 (222)
                      ..|-|.....+.+++-+||+|||-.=
T Consensus       375 ~FA~D~~~e~~~el~g~PDLIIGNYS  400 (790)
T TIGR02470       375 TFAEDAEKEILAELQGKPDLIIGNYS  400 (790)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             66899999999984689970673256


No 55 
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process.
Probab=24.38  E-value=51  Score=13.84  Aligned_cols=15  Identities=7%  Similarity=-0.334  Sum_probs=8.0

Q ss_pred             CHHHHHHHHHHHCCC
Q ss_conf             948999999997599
Q gi|254781122|r   85 ADGEIAVHKALQSGA   99 (222)
Q Consensus        85 TD~ekAL~~~~~~~~   99 (222)
                      +=.=+|.+.+.+...
T Consensus        68 NL~yrAa~Ll~~~~~   82 (322)
T TIGR00154        68 NLIYRAAKLLKNKAN   82 (322)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             069999999998510


No 56 
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=24.12  E-value=51  Score=13.81  Aligned_cols=29  Identities=28%  Similarity=0.408  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
Q ss_conf             89999999975997599995378781247889
Q gi|254781122|r   87 GEIAVHKALQSGARNIILVGSISGQRFDYALQ  118 (222)
Q Consensus        87 ~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~la  118 (222)
                      ++|||+. ++++.+-..+..  -|+|+||.-.
T Consensus       286 t~kAi~~-L~kn~~GFFLMV--EGg~ID~a~H  314 (482)
T COG1785         286 TEKAIDL-LSKNKKGFFLMV--EGGRIDWAGH  314 (482)
T ss_pred             HHHHHHH-HCCCCCCEEEEE--ECCCCCHHHC
T ss_conf             9999998-614998559997--4452665325


No 57 
>PRK06487 glycerate dehydrogenase; Provisional
Probab=23.82  E-value=52  Score=13.78  Aligned_cols=151  Identities=11%  Similarity=0.038  Sum_probs=75.2

Q ss_pred             EEEEEEECCCCCCCHHHHHHH-C-CCCEEE-EEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEEE-ECCCCCCC
Q ss_conf             069999877999816889851-3-494999-9188899998899734999721129988997403188599-20567779
Q gi|254781122|r   10 IDFAILLNGDIRVTNRLLCAI-E-SCKVIA-ADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIF-YPNDKDMA   85 (222)
Q Consensus        10 ~~~~Ii~nG~~~~~~~~~~~~-~-~~~iIa-vDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~-~~~dkD~T   85 (222)
                      |+++++=.+.....+.....+ + ...+.. -..-.+-+.+.=--.|.+|....-++.+.++..++.+.+. .-.--|.-
T Consensus         1 mk~v~ld~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~el~~~~~dadi~i~~~~~i~~~~l~~ap~LK~I~~~g~G~d~I   80 (317)
T PRK06487          1 MRAVFLDHGSLDLGDLDLSPLEQAFDELQLHAATRPEQVAERLQGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV   80 (317)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCEEEEECCCCCCCC
T ss_conf             95999574448877779599985299579956999899999848991999689712899993499981998888363220


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC---CC-EEEEEECCCEEEEEECCCEEEEECCCEEEE
Q ss_conf             48999999997599759999537878124788999999988626---98-199994891899996795699705980899
Q gi|254781122|r   86 DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKK---NI-NVTLTSGIEEVFILVPGKHSFDLPENSVFS  161 (222)
Q Consensus        86 D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~---~~-~i~l~~~~~~i~~l~~g~~~~~~~~g~~~S  161 (222)
                      |.+-    |.+++..=...-|..+..=-+|+++.+..+.+-...   .+ .-.+. . ...+..  ..+....-.|++++
T Consensus        81 D~~a----a~~~gI~V~n~pg~~~~~VAE~~l~liL~l~R~~~~~~~~~~~g~W~-~-~~~~~~--~~~~~~eL~gktvG  152 (317)
T PRK06487         81 DLAA----ARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQ-Q-SSQFCL--LDFPIVELEGKTLG  152 (317)
T ss_pred             CHHH----HHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CCCCCC--CCCCCCEECCCEEE
T ss_conf             6999----99789989978986837999999999999985458999999828433-3-655553--47765430597899


Q ss_pred             EEECCCC
Q ss_conf             9751577
Q gi|254781122|r  162 IVCLEDI  168 (222)
Q Consensus       162 l~p~~~~  168 (222)
                      ++.++..
T Consensus       153 IiG~G~I  159 (317)
T PRK06487        153 LLGHGEL  159 (317)
T ss_pred             EECCCHH
T ss_conf             9786768


No 58 
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=23.62  E-value=52  Score=13.75  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=17.2

Q ss_pred             CEEEEEEECCCCCCCHHHHHHHC
Q ss_conf             40699998779998168898513
Q gi|254781122|r    9 FIDFAILLNGDIRVTNRLLCAIE   31 (222)
Q Consensus         9 ~~~~~Ii~nG~~~~~~~~~~~~~   31 (222)
                      |++++|++.|.-..-..+....+
T Consensus         1 Mkkiavl~SG~GSNl~aii~a~~   23 (200)
T PRK05647          1 MKRIVVLASGNGSNLQAIIDACA   23 (200)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHH
T ss_conf             97899999158044999999987


No 59 
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=21.80  E-value=57  Score=13.52  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=13.9

Q ss_pred             HHHHHHHCCCCCEEEEECCC
Q ss_conf             88999988997349997211
Q gi|254781122|r   41 GICHASQLKVVPELWIGDFD   60 (222)
Q Consensus        41 Ga~~l~~~~i~Pd~iiGDfD   60 (222)
                      .+.++.++|..|-++|||+-
T Consensus        61 ~L~~fq~~Gh~~i~liGg~T   80 (405)
T PRK13354         61 KLKQFQDAGHRAVILIGDFT   80 (405)
T ss_pred             HHHHHHHCCCCEEEEECCCC
T ss_conf             99999986994799967865


No 60 
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=21.71  E-value=48  Score=13.99  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             CCCEEEEECCCC--CCHHHHHHHC---CCC----EEEECCCCCCCHHHHHHHHH
Q ss_conf             973499972112--9988997403---188----59920567779489999999
Q gi|254781122|r   50 VVPELWIGDFDS--VDRTLLQQWS---SIK----RIFYPNDKDMADGEIAVHKA   94 (222)
Q Consensus        50 i~Pd~iiGDfDS--i~~~~~~~~~---~~~----~i~~~~dkD~TD~ekAL~~~   94 (222)
                      ..|-+++=||||  |..|......   .++    .|-....+-.-||+-+|+.=
T Consensus       108 ~~pgLvVfDMDSTlI~~E~IDELA~~aGv~~eVa~ITerAM~GELDF~eSL~~R  161 (322)
T PRK11133        108 RTPGLLVMDMDSTAIQIECIDEIAKLAGVGEEVAEVTERAMRGELDFEASLRQR  161 (322)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             679859995754032254599999980987899999999978987879999999


No 61 
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology.  The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=21.37  E-value=58  Score=13.47  Aligned_cols=13  Identities=15%  Similarity=-0.092  Sum_probs=4.7

Q ss_pred             EEEHHHHHHHHCC
Q ss_conf             9918889999889
Q gi|254781122|r   37 AADGGICHASQLK   49 (222)
Q Consensus        37 avDgGa~~l~~~~   49 (222)
                      -+......+.+..
T Consensus        35 l~~~~~~~l~~~~   47 (279)
T cd03789          35 LAPPWFAPLLELM   47 (279)
T ss_pred             EECHHHHHHHHHC
T ss_conf             9893689999639


No 62 
>KOG4530 consensus
Probab=21.19  E-value=59  Score=13.44  Aligned_cols=54  Identities=15%  Similarity=0.168  Sum_probs=31.7

Q ss_pred             CCCEEEECCCCCCCHHHH----HHHHHHHC---CCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             188599205677794899----99999975---9975999953787812478899999998
Q gi|254781122|r   72 SIKRIFYPNDKDMADGEI----AVHKALQS---GARNIILVGSISGQRFDYALQHITLATS  125 (222)
Q Consensus        72 ~~~~i~~~~dkD~TD~ek----AL~~~~~~---~~~~i~i~gg~~G~R~DH~lani~~L~~  125 (222)
                      ....++|..-|+.--.-.    ||+|+...   ++.-|+-+||.+|||---.|-.+....+
T Consensus        86 ~aD~ivFvtPqYN~gypA~LKNAlD~lyheW~gKPalivSyGGhGGg~c~~qL~~v~~fLk  146 (199)
T KOG4530          86 EADSIVFVTPQYNFGYPAPLKNALDWLYHEWAGKPALIVSYGGHGGGRCQYQLRQVGVFLK  146 (199)
T ss_pred             HCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHE
T ss_conf             1463799646436777667777888763010599659997368787327999999875510


No 63 
>PRK09912 aldo-keto reductase; Provisional
Probab=21.10  E-value=59  Score=13.43  Aligned_cols=38  Identities=26%  Similarity=0.287  Sum_probs=18.4

Q ss_pred             EECCCCCC--CHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
Q ss_conf             92056777--948999999997599759999537878124788
Q gi|254781122|r   77 FYPNDKDM--ADGEIAVHKALQSGARNIILVGSISGQRFDYAL  117 (222)
Q Consensus        77 ~~~~dkD~--TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~l  117 (222)
                      .|.+|.+.  -+.-.||..+++.|  .+--+| ++.-..++.-
T Consensus       137 lH~~d~~~p~ee~~~al~~l~~~G--kir~iG-vSn~~~~~~~  176 (346)
T PRK09912        137 SHRVDENTPMEETASALAHAVQSG--KALYVG-ISSYSPERTQ  176 (346)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCC--CEEEEE-ECCCCHHHHH
T ss_conf             035898888799999999999849--500784-2367899999


No 64 
>pfam00326 Peptidase_S9 Prolyl oligopeptidase family.
Probab=21.02  E-value=59  Score=13.42  Aligned_cols=33  Identities=15%  Similarity=0.186  Sum_probs=25.9

Q ss_pred             CCCCCCHHHHHHHHHHHCCC---CEEEEEECCCCCC
Q ss_conf             56777948999999997599---7599995378781
Q gi|254781122|r   80 NDKDMADGEIAVHKALQSGA---RNIILVGSISGQR  112 (222)
Q Consensus        80 ~dkD~TD~ekAL~~~~~~~~---~~i~i~gg~~G~R  112 (222)
                      ..+|..|...|++|+.+++.   +.|.++|.--||-
T Consensus        41 G~~~~~D~~~~v~~l~~~~~iD~~RI~v~G~S~GG~   76 (212)
T pfam00326        41 GQNEFDDFIAAAEYLIAQGYVDPDRLAIWGGSYGGY   76 (212)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCHHHEEEEEECCCHH
T ss_conf             868799999999999986998855748976762209


No 65 
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=20.65  E-value=60  Score=13.37  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=17.6

Q ss_pred             HHHHHCCCCCEEEEECCCC-CCHHHHHHH
Q ss_conf             9999889973499972112-998899740
Q gi|254781122|r   43 CHASQLKVVPELWIGDFDS-VDRTLLQQW   70 (222)
Q Consensus        43 ~~l~~~~i~Pd~iiGDfDS-i~~~~~~~~   70 (222)
                      .-|++.||.||++|+=-|- ++++.++..
T Consensus       205 KeLRs~Gi~PD~i~cRs~~~l~~~~k~Ki  233 (571)
T TIGR00337       205 KELRSLGIQPDIIICRSSEPLDKSLKKKI  233 (571)
T ss_pred             HHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             99986098886899818876897776452


No 66 
>PRK05625 hypothetical protein; Validated
Probab=20.03  E-value=62  Score=13.29  Aligned_cols=63  Identities=16%  Similarity=0.200  Sum_probs=36.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
Q ss_conf             7349997211299889974031885992056777948999999997599759999537878124788
Q gi|254781122|r   51 VPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYAL  117 (222)
Q Consensus        51 ~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~l  117 (222)
                      .|.+++-. .+..++..+..++....+....++..|++.+|+.+.+++...+.+-||   +++=+.|
T Consensus       119 ~~~li~~~-~~~~~~~~~~l~~~~i~v~~~~~~~ldl~~il~~L~~~gi~~lLvEGG---~~l~~sf  181 (239)
T PRK05625        119 VPPIVLTS-AAAPADRRRELAAKAEVVVVGGDDRVDLAAALDALAERGLRRILCEGG---PTLLGSL  181 (239)
T ss_pred             CCEEEEEC-CCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECHH---HHHHHHH
T ss_conf             99899988-988989999998589699957999879999999999769998998627---9999999


Done!