Query gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 222 No_of_seqs 119 out of 915 Neff 7.0 Searched_HMMs 39220 Date Mon May 30 04:54:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781122.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 cd07995 TPK Thiamine pyrophosp 100.0 0 0 361.5 26.1 202 12-214 1-207 (208) 2 COG1564 THI80 Thiamine pyropho 100.0 0 0 340.9 23.6 207 10-218 1-210 (212) 3 KOG3153 consensus 100.0 5.1E-40 1.3E-44 274.1 17.2 202 8-210 21-243 (250) 4 pfam04263 TPK_catalytic Thiami 100.0 7.3E-33 1.9E-37 228.7 13.7 119 17-138 1-122 (122) 5 TIGR01378 thi_PPkinase thiamin 100.0 5.6E-31 1.4E-35 216.7 15.3 200 13-213 2-211 (211) 6 pfam04265 TPK_B1_binding Thiam 99.3 1.2E-11 3E-16 94.0 8.0 64 148-211 1-66 (66) 7 COG4825 Uncharacterized membra 98.6 5.2E-07 1.3E-11 64.5 8.8 61 10-70 181-245 (395) 8 COG1634 Uncharacterized Rossma 98.1 5E-05 1.3E-09 52.0 10.0 59 8-68 51-109 (232) 9 pfam01973 MAF_flag10 Protein o 97.7 0.00086 2.2E-08 44.1 11.0 51 10-61 25-77 (169) 10 COG2604 Uncharacterized protei 96.8 0.0016 4.2E-08 42.3 4.1 53 5-57 220-274 (594) 11 PRK03202 6-phosphofructokinase 84.3 3.4 8.6E-05 21.3 7.2 94 8-111 1-106 (323) 12 KOG3043 consensus 67.1 3.4 8.7E-05 21.3 1.8 74 41-119 59-139 (242) 13 PRK01395 V-type ATP synthase s 65.1 8.2 0.00021 18.9 3.4 69 54-135 7-75 (104) 14 pfam04914 DltD_C DltD C-termin 59.8 13 0.00032 17.7 3.6 41 76-116 27-67 (130) 15 PRK00726 murG N-acetylglucosam 54.8 16 0.00042 17.0 5.0 11 9-19 1-11 (359) 16 PRK06932 glycerate dehydrogena 54.2 17 0.00043 16.9 5.5 112 9-125 1-115 (314) 17 pfam00365 PFK Phosphofructokin 51.6 19 0.00047 16.6 7.3 92 10-111 1-104 (279) 18 PRK12446 N-acetylglucosaminyl 51.5 19 0.00047 16.6 5.1 11 9-19 1-11 (352) 19 KOG2724 consensus 50.0 16 0.00041 17.0 2.8 77 65-147 379-455 (487) 20 KOG0228 consensus 48.3 8.8 0.00022 18.7 1.2 34 50-95 277-310 (571) 21 TIGR02482 PFKA_ATP 6-phosphofr 47.7 19 0.00048 16.6 2.8 69 34-111 31-103 (302) 22 cd01144 BtuF Cobalamin binding 47.2 22 0.00055 16.2 4.6 63 32-94 20-101 (245) 23 TIGR01085 murE UDP-N-acetylmur 46.9 22 0.00056 16.2 3.5 85 45-139 312-414 (494) 24 smart00852 MoCF_biosynth Proba 44.1 24 0.00061 15.9 5.4 64 59-124 16-83 (135) 25 pfam01884 PcrB PcrB family. Th 42.7 25 0.00065 15.8 5.8 49 67-119 4-53 (231) 26 PRK13372 pcmA protocatechuate 42.1 26 0.00066 15.7 3.1 35 82-118 308-344 (444) 27 PRK07085 diphosphate--fructose 41.3 27 0.00068 15.6 11.0 112 9-135 72-198 (557) 28 cd01567 NAPRTase_PncB Nicotina 38.8 21 0.00054 16.2 2.0 24 82-105 300-323 (343) 29 PRK01160 hypothetical protein; 38.7 29 0.00075 15.4 8.4 79 17-95 24-108 (178) 30 pfam12000 DUF3495 Domain of un 37.7 29 0.00075 15.3 2.6 39 37-77 52-93 (172) 31 pfam10185 Mesd Chaperone for w 37.6 25 0.00065 15.7 2.2 87 91-183 55-146 (158) 32 cd00764 Eukaryotic_PFK Phospho 37.5 30 0.00078 15.2 9.2 91 7-108 387-488 (762) 33 cd00763 Bacterial_PFK Phosphof 37.2 31 0.00079 15.2 9.4 92 10-111 1-104 (317) 34 TIGR02477 PFKA_PPi diphosphate 37.0 31 0.00079 15.2 7.5 115 8-136 73-201 (566) 35 pfam04439 Adenyl_transf Strept 36.6 31 0.0008 15.2 3.7 104 13-142 23-131 (282) 36 TIGR02021 BchM-ChlM magnesium 36.6 21 0.00053 16.3 1.6 111 32-146 76-196 (224) 37 PRK11106 queuosine biosynthesi 36.6 32 0.0008 15.2 7.0 97 9-107 1-123 (231) 38 pfam08538 DUF1749 Protein of u 36.3 32 0.00081 15.1 2.7 34 80-114 84-122 (303) 39 KOG4225 consensus 35.8 32 0.00083 15.1 3.2 83 137-220 250-338 (489) 40 pfam00994 MoCF_biosynth Probab 35.5 33 0.00084 15.0 5.0 65 59-124 15-82 (140) 41 cd00758 MoCF_BD MoCF_BD: molyb 35.5 33 0.00084 15.0 7.2 64 59-124 17-84 (133) 42 TIGR01574 miaB-methiolase tRNA 34.9 30 0.00078 15.3 2.3 83 82-166 184-279 (456) 43 pfam02568 ThiI Thiamine biosyn 32.5 3.9 9.9E-05 20.9 -2.6 157 11-173 5-185 (197) 44 PRK05912 tyrosyl-tRNA syntheta 31.0 39 0.00099 14.6 2.9 17 44-60 59-75 (402) 45 cd00765 Pyrophosphate_PFK Phos 29.9 40 0.001 14.5 10.1 113 8-135 71-198 (550) 46 PRK08349 hypothetical protein; 29.2 7.4 0.00019 19.2 -1.6 159 10-174 1-183 (198) 47 TIGR00338 serB phosphoserine p 28.4 13 0.00033 17.6 -0.5 49 46-94 8-65 (223) 48 cd00363 PFK Phosphofructokinas 27.2 45 0.0011 14.2 10.2 102 10-126 1-114 (338) 49 PRK00139 murE UDP-N-acetylmura 26.4 46 0.0012 14.1 3.3 10 22-31 48-57 (481) 50 PRK09288 purT phosphoribosylgl 25.8 48 0.0012 14.0 5.6 79 1-79 4-103 (395) 51 pfam01075 Glyco_transf_9 Glyco 25.6 48 0.0012 14.0 4.0 30 10-40 13-42 (249) 52 PRK10376 putative oxidoreducta 25.5 48 0.0012 14.0 4.3 20 88-110 148-167 (291) 53 COG0412 Dienelactone hydrolase 25.1 49 0.0013 13.9 3.4 75 39-113 44-125 (236) 54 TIGR02470 sucr_synth sucrose s 25.0 32 0.00081 15.1 1.0 26 35-60 375-400 (790) 55 TIGR00154 ispE 4-diphosphocyti 24.4 51 0.0013 13.8 2.1 15 85-99 68-82 (322) 56 COG1785 PhoA Alkaline phosphat 24.1 51 0.0013 13.8 2.6 29 87-118 286-314 (482) 57 PRK06487 glycerate dehydrogena 23.8 52 0.0013 13.8 6.1 151 10-168 1-159 (317) 58 PRK05647 purN phosphoribosylgl 23.6 52 0.0013 13.8 8.7 23 9-31 1-23 (200) 59 PRK13354 tyrosyl-tRNA syntheta 21.8 57 0.0015 13.5 3.0 20 41-60 61-80 (405) 60 PRK11133 serB phosphoserine ph 21.7 48 0.0012 14.0 1.4 45 50-94 108-161 (322) 61 cd03789 GT1_LPS_heptosyltransf 21.4 58 0.0015 13.5 4.0 13 37-49 35-47 (279) 62 KOG4530 consensus 21.2 59 0.0015 13.4 4.1 54 72-125 86-146 (199) 63 PRK09912 aldo-keto reductase; 21.1 59 0.0015 13.4 4.4 38 77-117 137-176 (346) 64 pfam00326 Peptidase_S9 Prolyl 21.0 59 0.0015 13.4 2.3 33 80-112 41-76 (212) 65 TIGR00337 PyrG CTP synthase; I 20.7 60 0.0015 13.4 1.7 28 43-70 205-233 (571) 66 PRK05625 hypothetical protein; 20.0 62 0.0016 13.3 7.7 63 51-117 119-181 (239) No 1 >cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis. Probab=100.00 E-value=0 Score=361.54 Aligned_cols=202 Identities=36% Similarity=0.613 Sum_probs=184.8 Q ss_pred EEEEECCCCCCCHHHHHHHC-CCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC--CCEEEECCCCCCCHHH Q ss_conf 99998779998168898513-49499991888999988997349997211299889974031--8859920567779489 Q gi|254781122|r 12 FAILLNGDIRVTNRLLCAIE-SCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS--IKRIFYPNDKDMADGE 88 (222) Q Consensus 12 ~~Ii~nG~~~~~~~~~~~~~-~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~--~~~i~~~~dkD~TD~e 88 (222) ++|++||+.|....+...++ .+++||||||+++|+++|+.||++||||||++++++++++. ..++++|+|||+||+| T Consensus 1 ~lIi~nG~~~~~~~~~~~~~~~~~iIaaDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~kD~TD~e 80 (208) T cd07995 1 ALILLGGPLPDSPLLLKLWKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDFTDFE 80 (208) T ss_pred CEEEECCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHH T ss_conf 99998999997389999986399899981189999986998789985543489899999885398389997103640799 Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEEC-CCEEEEEEECCC Q ss_conf 9999999759975999953787812478899999998862698199994891899996795699705-980899975157 Q gi|254781122|r 89 IAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLP-ENSVFSIVCLED 167 (222) Q Consensus 89 kAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~-~g~~~Sl~p~~~ 167 (222) |||++|.++++++++++|| +|||+||+|+|+++|+++.+.+.+++++++++.++++.+|.+.++.. .|+++|++|+++ T Consensus 81 kAl~~~~~~~~~~i~i~Ga-~GgR~DH~lanl~~l~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~~g~~~Sl~pl~~ 159 (208) T cd07995 81 KALKLALERGADEIVILGA-TGGRLDHTLANLNLLLKYAKDGIKIVLIDEQNEIFLLLPGSHTLELEEEGKYVSLIPLGE 159 (208) T ss_pred HHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCEEEEECCCCCEEEEEECCC T ss_conf 9999999779988999937-899677899999999988744983999959989999929977996369999999998668 Q ss_pred CCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEEEEEE Q ss_conf 762573041665378785278753884998495-79999579099997 Q gi|254781122|r 168 IENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILIS 214 (222) Q Consensus 168 ~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~llvi~ 214 (222) .++||++||||||++++|.+++++|+||++.++ ++|++++|.++++. T Consensus 160 ~~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~~~I~v~~G~llvi~ 207 (208) T cd07995 160 VTGLTLKGLKYPLDNATLSFGSSLGTSNEFTGEKATVSVESGLLLVIL 207 (208) T ss_pred CCEEEECCCEEECCCCEECCCCCCEEEEEEECCEEEEEECCCEEEEEE T ss_conf 724786078877799553169981673699898399998899899998 No 2 >COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism] Probab=100.00 E-value=0 Score=340.86 Aligned_cols=207 Identities=37% Similarity=0.580 Sum_probs=187.9 Q ss_pred EEEEEEECCCCCCC-HHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCE-EEECCCCCCCHH Q ss_conf 06999987799981-6889851349499991888999988997349997211299889974031885-992056777948 Q gi|254781122|r 10 IDFAILLNGDIRVT-NRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKR-IFYPNDKDMADG 87 (222) Q Consensus 10 ~~~~Ii~nG~~~~~-~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~-i~~~~dkD~TD~ 87 (222) |...+++||+.+.+ +.+...++..++||||||+++|++++++|+++||||||++.|++++++.+.+ +++|+|||+||+ T Consensus 1 ~~~~~il~g~~~~~~~~~~~~~~~~~~v~aDgGa~~l~~~gl~P~~~vGDfDSv~~e~~~~~~~~~~~~~f~~eKd~TD~ 80 (212) T COG1564 1 MSAVLILNGGILAPTDRLDYLWKFDKIVAADGGANHLLELGLVPDLAVGDFDSVSEELLAYYKEKTVTIKFPAEKDSTDL 80 (212) T ss_pred CCEEEEECCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEECCHHHCCCHH T ss_conf 94699971765578256432045666999870888999849986578724645679999998645762346834354669 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEEEEECCC Q ss_conf 99999999759975999953787812478899999998862698199994891899996795699705980899975157 Q gi|254781122|r 88 EIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLED 167 (222) Q Consensus 88 ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~g~~~Sl~p~~~ 167 (222) |+|++++.++++++++++|| +|||+||+|+|++++++++..+.++.+.++++.++.++||.+.++.+++..+|.|+.+. T Consensus 81 elAl~~a~e~g~d~i~i~Ga-~GGR~DH~l~nl~ll~~~~~~~~~i~l~~~~n~~~~l~~g~~~i~~~~~~~~s~f~~~~ 159 (212) T COG1564 81 ELALDEALERGADEIVILGA-LGGRLDHALANLFLLLRPAKSGFKITLISGQNLITPLPPGQHTIEKDPGYLYSIFGGED 159 (212) T ss_pred HHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCEEECCCCCCCEEEEECCC T ss_conf 99999999809977999815-78818999999999875442064699963785799847985673268995189984153 Q ss_pred CCEEEEECEEEECCCCEECCCCCEEEEEEECC-CEEEEEECCEEEEEECCCC Q ss_conf 76257304166537878527875388499849-5799995790999974410 Q gi|254781122|r 168 IENITITGAKYTLSHHSLSLGSSRAVSNVVTK-NLTIMLDQGLAILISRPYD 218 (222) Q Consensus 168 ~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~-~~~I~~~~G~llvi~~~kd 218 (222) ..++|++|+||||+++.+++++++++||++.+ .++|++++|.++++. ++| T Consensus 160 ~~~Lti~g~KypL~~~~~~~g~~~siSN~~~~~~~~vs~~~G~~l~~~-~~~ 210 (212) T COG1564 160 VAGLTIKGAKYPLKNADLPFGSSRSISNEFIGDPVTVSLKSGIVLVIA-SPD 210 (212) T ss_pred CCCEEECCCEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCEEEEEE-CCC T ss_conf 121686164622567532145506873104177089995797899997-167 No 3 >KOG3153 consensus Probab=100.00 E-value=5.1e-40 Score=274.13 Aligned_cols=202 Identities=21% Similarity=0.321 Sum_probs=173.1 Q ss_pred CCEEEEEEECCCCCCCHH-HHHHHCCCCE-EEEEHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHCCCC-EEEEC Q ss_conf 740699998779998168-8985134949-99918889999889-----9734999721129988997403188-59920 Q gi|254781122|r 8 KFIDFAILLNGDIRVTNR-LLCAIESCKV-IAADGGICHASQLK-----VVPELWIGDFDSVDRTLLQQWSSIK-RIFYP 79 (222) Q Consensus 8 ~~~~~~Ii~nG~~~~~~~-~~~~~~~~~i-IavDgGa~~l~~~~-----i~Pd~iiGDfDSi~~~~~~~~~~~~-~i~~~ 79 (222) +...+++++|+++..+.. ...+|+.+.+ +|||||||+++++- ..||+|+|||||+++|++++|++.+ .+++. T Consensus 21 d~~~~lvvLN~~iq~p~~~f~~LWk~A~lRvcaDGgaNrlyd~~~~~~~~~Pd~I~GDfDSi~~ev~~yy~~~g~~vV~~ 100 (250) T KOG3153 21 DCKSVLVVLNQEIQIPDNRFRLLWKKAKLRVCADGGANRLYDYLSDRTSEKPDYICGDFDSITEEVDDYYKKNGVTVVHT 100 (250) T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCEEEEC T ss_conf 84359999678887853789998764006575167433442303544344876565360231099999998529736757 Q ss_pred CCCCCCHHHHHHHHHHHCCCCE------EEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEE Q ss_conf 5677794899999999759975------9999537878124788999999988626981999948918999967956997 Q gi|254781122|r 80 NDKDMADGEIAVHKALQSGARN------IILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFD 153 (222) Q Consensus 80 ~dkD~TD~ekAL~~~~~~~~~~------i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~ 153 (222) ||||+|||.||++++.++.-.. ++++|| .||||||+++|++.|+++.+...++.++.+.+.++.+.||.+.++ T Consensus 101 pdQd~TDftKcv~~i~~~~~~~e~~~~~Ivvlgg-lgGRfDq~m~nln~Ly~~~~~~~~i~llt~~~li~Ll~pg~h~ie 179 (250) T KOG3153 101 PDQDTTDFTKCVKWIQEHKTLTEWKFLNIVVLGG-LGGRFDQTMANLNTLYRAVDIQFPIFLLTEDSLIDLLQPGKHRIE 179 (250) T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECC-CCCCHHHHHHHHHHHHEHHCCCCCEEEECCCCHHHHHCCCCCEEE T ss_conf 8767213899999998862364420445899646-676277777767766121035643699527756765268973377 Q ss_pred EC-----CCEEEEEEECCC-CCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEE Q ss_conf 05-----980899975157-762573041665378785278753884998495-7999957909 Q gi|254781122|r 154 LP-----ENSVFSIVCLED-IENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLA 210 (222) Q Consensus 154 ~~-----~g~~~Sl~p~~~-~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~l 210 (222) .. .+..|+|+|+++ +...++.||||+|.+..+++|...++||...++ +.|+.+...+ T Consensus 180 ~~v~~~~~~~~CGLiPIGq~~~~ktT~GLkWnl~n~~~~fgglvStsN~~~~~~vtvetd~~li 243 (250) T KOG3153 180 LHVNLGMTGKWCGLIPIGQPETVKTTTGLKWNLSNRRMKFGGLVSTSNTYDGEVVTVETDHDLI 243 (250) T ss_pred ECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEEECCEEEEECCEEECCEEEEECCCCEE T ss_conf 2566654567432465366101454034120332560111408863342421179996189649 No 4 >pfam04263 TPK_catalytic Thiamin pyrophosphokinase, catalytic domain. Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis. Probab=100.00 E-value=7.3e-33 Score=228.69 Aligned_cols=119 Identities=30% Similarity=0.453 Sum_probs=105.7 Q ss_pred CCCCCCCHHHHHHHCC-CCEEEEEHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHCCCC-EEEECCCCCCCHHHHHHHH Q ss_conf 7799981688985134-94999918889999889-9734999721129988997403188-5992056777948999999 Q gi|254781122|r 17 NGDIRVTNRLLCAIES-CKVIAADGGICHASQLK-VVPELWIGDFDSVDRTLLQQWSSIK-RIFYPNDKDMADGEIAVHK 93 (222) Q Consensus 17 nG~~~~~~~~~~~~~~-~~iIavDgGa~~l~~~~-i~Pd~iiGDfDSi~~~~~~~~~~~~-~i~~~~dkD~TD~ekAL~~ 93 (222) ||++|. ++.+.|+. +++||||||+++|++++ +.||++||||||++++++++++... .++++||||+||+||||++ T Consensus 1 Ng~~P~--~~~~l~~~a~~iIa~DgGa~~l~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~dkD~TD~ekAl~~ 78 (122) T pfam04263 1 NGDLPD--FVRDLWKNADLRVAADGGANHLRDFLSLKPDFVVGDFDSITEELRAYYKEAGVNLIHFPEKDDTDLELALDE 78 (122) T ss_pred CCCCHH--HHHHHHHHCCEEEEECCHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH T ss_conf 987207--899999868999997249999999289898989717789985899999856972887856675689999999 Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 997599759999537878124788999999988626981999948 Q gi|254781122|r 94 ALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSG 138 (222) Q Consensus 94 ~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~ 138 (222) |.++++++++++|| +|||+||+|||+++|++|+++++.+++.++ T Consensus 79 ~~~~~~~~i~i~G~-~GgR~DH~lanl~~L~k~~~~~~~i~l~d~ 122 (122) T pfam04263 79 ALELGADEIVILGA-LGGRLDHALANLNLLLRLAYTDNTIFLLDG 122 (122) T ss_pred HHHCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 99779998999888-899776999999999999846984998149 No 5 >TIGR01378 thi_PPkinase thiamine pyrophosphokinase; InterPro: IPR006282 This entry represents prokaryotic and eukaryotic thiamin pyrophosphokinase, which converts thiamin (vitamin B1) into the enzyme cofactor thiamin pyrophosphate (TPP, coenzyme B1). ; GO: 0004788 thiamin diphosphokinase activity, 0006772 thiamin metabolic process. Probab=99.97 E-value=5.6e-31 Score=216.71 Aligned_cols=200 Identities=33% Similarity=0.525 Sum_probs=176.0 Q ss_pred EEEECCCCCCCHHHHHH-HCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC--CCEEEECCCCCCCHHHH Q ss_conf 99987799981688985-1349499991888999988997349997211299889974031--88599205677794899 Q gi|254781122|r 13 AILLNGDIRVTNRLLCA-IESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS--IKRIFYPNDKDMADGEI 89 (222) Q Consensus 13 ~Ii~nG~~~~~~~~~~~-~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~--~~~i~~~~dkD~TD~ek 89 (222) ++++||+.+........ ...+.++|+|||++++++.++.|++++|||||+..+.++.+.. ...+.++++||.||+++ T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~p~~~~gd~ds~~~~~~~~~~~~~~~~~~~~~~~~~td~~~ 81 (211) T TIGR01378 2 LILAGGEAPLLELPLKLLKEADLLIAADGGANHLLKLGLTPDLIVGDFDSITEEELEFYKKAGVKLIVFPAEKDTTDLEL 81 (211) T ss_pred CEECCCCCCCCCCCCHHHCCCCEEEEECCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH T ss_conf 11045443431100000002330465211013344226763156504444326788766531123221242113311688 Q ss_pred HHHHHHHCCCC-EEEEEECCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEECCCEEEEEECCCEEEE-ECCCEEEEEEEC Q ss_conf 99999975997-59999537878124788999999988--626981999948918999967956997-059808999751 Q gi|254781122|r 90 AVHKALQSGAR-NIILVGSISGQRFDYALQHITLATSL--KKKNINVTLTSGIEEVFILVPGKHSFD-LPENSVFSIVCL 165 (222) Q Consensus 90 AL~~~~~~~~~-~i~i~gg~~G~R~DH~lani~~L~~~--~~~~~~i~l~~~~~~i~~l~~g~~~~~-~~~g~~~Sl~p~ 165 (222) |+.++.+.++. .+.++|+ +|+|+||.++|++++..+ ...+..+.+.++.+.++.+.+|.+.+. ...+.++|++|+ T Consensus 82 a~~~~~~~~~~~~~~~~g~-~ggr~dh~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 160 (211) T TIGR01378 82 ALKKALERGADAEITILGA-TGGRLDHLLANLNLLLEPQLLKRGIKVRLIDEQNVITLLLPGKYTIIKEEKGSYISLLPF 160 (211) T ss_pred HHHHHHHCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEECC T ss_conf 9999875067412688621-453035666665555433232036237870465146640466421113356532443114 Q ss_pred C-CCCEEEEECEEEECCCCEECCCC-CEEEEEEECCC-EEEEEECCEEEEE Q ss_conf 5-77625730416653787852787-53884998495-7999957909999 Q gi|254781122|r 166 E-DIENITITGAKYTLSHHSLSLGS-SRAVSNVVTKN-LTIMLDQGLAILI 213 (222) Q Consensus 166 ~-~~~~vt~~Glky~L~~~~l~~~~-~~~~SN~~~~~-~~I~~~~G~llvi 213 (222) + .+.+++++|+||+|++..+..+. ..++||++.++ +.+++++|.++++ T Consensus 161 ~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~sn~~~~~~~~~~~~~g~~~~~ 211 (211) T TIGR01378 161 GGDVAGLTTKGLKYPLNNADLKFGGLSLGISNEFIGEKATVSVESGILLVI 211 (211) T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCEEEEEECCCEEEEC T ss_conf 641100001211012220010245432001012214404786516335518 No 6 >pfam04265 TPK_B1_binding Thiamin pyrophosphokinase, vitamin B1 binding domain. Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis. Probab=99.29 E-value=1.2e-11 Score=94.04 Aligned_cols=64 Identities=28% Similarity=0.434 Sum_probs=55.3 Q ss_pred CCEEEEECCC-EEEEEEECCCCCEEEEECEEEECCCCEECCCCCEEEEEEECC-CEEEEEECCEEE Q ss_conf 9569970598-089997515776257304166537878527875388499849-579999579099 Q gi|254781122|r 148 GKHSFDLPEN-SVFSIVCLEDIENITITGAKYTLSHHSLSLGSSRAVSNVVTK-NLTIMLDQGLAI 211 (222) Q Consensus 148 g~~~~~~~~g-~~~Sl~p~~~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~-~~~I~~~~G~ll 211 (222) |.+.+....+ +++|++|+++++++|++|+||||++++|.+++++++||++.+ .++|++++|.++ T Consensus 1 G~~~i~~~~~~~y~Slip~~~~~~lt~~G~kY~L~~~~l~~g~~~~~SNe~~~~~~~is~~~G~ll 66 (66) T pfam04265 1 GKHLIKKEPDYKYCSFIPLGEPVELTTKGLKYPLTNQDLSFGSSISTSNEFIDETGEVSFETGILL 66 (66) T ss_pred CCEEEEECCCCCEEEEEECCCCEEEEEECCEEECCCCEECCCCCCEEEEEEECCEEEEEECCEEEC T ss_conf 956987568997999998989806997477937687454189911883669897489998407989 No 7 >COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown] Probab=98.56 E-value=5.2e-07 Score=64.54 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=44.5 Q ss_pred EEEEEEECCCCCCCH--HHHHHHC-CCCE-EEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH Q ss_conf 069999877999816--8898513-4949-99918889999889973499972112998899740 Q gi|254781122|r 10 IDFAILLNGDIRVTN--RLLCAIE-SCKV-IAADGGICHASQLKVVPELWIGDFDSVDRTLLQQW 70 (222) Q Consensus 10 ~~~~Ii~nG~~~~~~--~~~~~~~-~~~i-IavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~ 70 (222) .+++|++-++--..+ .+...++ ...+ |+|||+|+-+.+.|++|++||||+|||+.+++.-- T Consensus 181 R~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdgaAD~l~~~GykP~lIvGdpd~i~~~~Lr~g 245 (395) T COG4825 181 RHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRKAGYKPQLIVGDPDQISTEALRCG 245 (395) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHCCCCCCEEECCCCHHHHHHHHCC T ss_conf 57999738986688899988888750877997055078899747986446538012108888416 No 8 >COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only] Probab=98.09 E-value=5e-05 Score=51.97 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=42.3 Q ss_pred CCEEEEEEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHH Q ss_conf 7406999987799981688985134949999188899998899734999721129988997 Q gi|254781122|r 8 KFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQ 68 (222) Q Consensus 8 ~~~~~~Ii~nG~~~~~~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~ 68 (222) .+..++|+.+|+.- .+. ....+...+|+|||+++.+++.|+.||++++|+|-=-...++ T Consensus 51 ~g~~v~vvG~gP~l-~e~-~~~~~~~~vi~AdgA~~~l~~~gi~pDiiVTDlDgd~e~~~~ 109 (232) T COG1634 51 EGREVAVVGAGPSL-EEE-IKGLSSEVVIAADGAVSALLERGIRPDIIVTDLDGDPEDLLS 109 (232) T ss_pred CCCEEEEECCCCCH-HHH-HCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCHHHHHH T ss_conf 58879997778767-666-334655359955689999998599775797059889889987 No 9 >pfam01973 MAF_flag10 Protein of unknown function DUF115. This family of archaebacterial proteins has no known function. Probab=97.72 E-value=0.00086 Score=44.12 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=37.3 Q ss_pred EEEEEEECCCCCCCHH-HHHHHC-CCCEEEEEHHHHHHHHCCCCCEEEEECCCC Q ss_conf 0699998779998168-898513-494999918889999889973499972112 Q gi|254781122|r 10 IDFAILLNGDIRVTNR-LLCAIE-SCKVIAADGGICHASQLKVVPELWIGDFDS 61 (222) Q Consensus 10 ~~~~Ii~nG~~~~~~~-~~~~~~-~~~iIavDgGa~~l~~~~i~Pd~iiGDfDS 61 (222) .++.|++|||--.... .+...+ ...+||||+.+..|.+.||.||+++- .|. T Consensus 25 ~~~~IvgaGPSL~~~i~~Lk~~~~~~~iia~~~a~~~L~~~gI~Pd~~v~-~D~ 77 (169) T pfam01973 25 KPAIIVGAGPSLDKHLPLLKKNRDKAVIIAADSALKALLKHGIKPDIVVS-LDR 77 (169) T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCEEEEE-ECC T ss_conf 71999956899899999999716983999966799999977998149999-748 No 10 >COG2604 Uncharacterized protein conserved in bacteria [Function unknown] Probab=96.80 E-value=0.0016 Score=42.34 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=40.2 Q ss_pred CCCCCEEEEEEECCCCCCC--HHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEE Q ss_conf 5287406999987799981--6889851349499991888999988997349997 Q gi|254781122|r 5 HTNKFIDFAILLNGDIRVT--NRLLCAIESCKVIAADGGICHASQLKVVPELWIG 57 (222) Q Consensus 5 ~~~~~~~~~Ii~nG~~~~~--~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiG 57 (222) +.+..+.++|+.+||--.. +++....+.+.|+|||+.+..|.+.||+||+|+= T Consensus 220 ~K~~~~~aiIVSaGPSL~Kql~lLK~y~~k~~IFcadsal~~L~k~GIkPDyVc~ 274 (594) T COG2604 220 RKNISEPAIIVSAGPSLEKQLPLLKKYQDKATIFCADSALPILAKHGIKPDYVCS 274 (594) T ss_pred HCCCCCCEEEECCCCCHHHCCHHHHHHCCCEEEEECCCCCHHHHHCCCCCCEEEE T ss_conf 3378885499807867444368888605553999889754579867999776998 No 11 >PRK03202 6-phosphofructokinase; Provisional Probab=84.27 E-value=3.4 Score=21.33 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=62.6 Q ss_pred CCEEEEEEECC-CCCCCHHH-----HHHH-CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC-CC----E Q ss_conf 74069999877-99981688-----9851-349499991888999988997349997211299889974031-88----5 Q gi|254781122|r 8 KFIDFAILLNG-DIRVTNRL-----LCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS-IK----R 75 (222) Q Consensus 8 ~~~~~~Ii~nG-~~~~~~~~-----~~~~-~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~-~~----~ 75 (222) .|+|++|+..| +.|.-+.. .... ....++++=.|..=|++..+. .++.+..+.+.. -+ . T Consensus 1 ~~kriaIltsGG~~pGmNa~ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~---------~L~~~~v~~i~~~GGt~Lgt 71 (323) T PRK03202 1 MMKKIGVLTSGGDAPGMNAAIRGVVRTAISEGLEVYGIYNGYLGLLEGDII---------DLDRASVSDLINRGGTALGS 71 (323) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCEE---------ECCHHHHHHHHHCCCCEEEE T ss_conf 986699993688867789999999999997899999991677886489857---------69999999998479867420 Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 992056777948999999997599759999537878 Q gi|254781122|r 76 IFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQ 111 (222) Q Consensus 76 i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~ 111 (222) -++++.++..+.+++++.+.+++.+-.+++|| .|. T Consensus 72 sR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG-dgS 106 (323) T PRK03202 72 ARYPEFKLEEGRAKAIENLKKHGIDALVVIGG-DGS 106 (323) T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC-CHH T ss_conf 48887778889999999999829999999379-469 No 12 >KOG3043 consensus Probab=67.14 E-value=3.4 Score=21.28 Aligned_cols=74 Identities=20% Similarity=0.164 Sum_probs=47.1 Q ss_pred HHHHHHHCC---CCCEEEEECCCCCCHH--HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCEEEEEE-CCCCCCH Q ss_conf 889999889---9734999721129988--997403188599205677794899999999759-97599995-3787812 Q gi|254781122|r 41 GICHASQLK---VVPELWIGDFDSVDRT--LLQQWSSIKRIFYPNDKDMADGEIAVHKALQSG-ARNIILVG-SISGQRF 113 (222) Q Consensus 41 Ga~~l~~~~---i~Pd~iiGDfDSi~~~--~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~-~~~i~i~g-g~~G~R~ 113 (222) +|+.+-..| ++||+.-||==|.+.+ ..+.+ +..+.+++-.-|+.+-++|++.++ .+.|=++| +++|++. T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w----~~~~~~~~~~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~v 134 (242) T KOG3043 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEW----MKGHSPPKIWKDITAVVKWLKNHGDSKKIGVVGFCWGAKVV 134 (242) T ss_pred HHHHHHCCCCEEECCHHHCCCCCCCCCCHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEE T ss_conf 99987228847972522058989988871353898----84479542106789999999972986156578885255078 Q ss_pred HHHHHH Q ss_conf 478899 Q gi|254781122|r 114 DYALQH 119 (222) Q Consensus 114 DH~lan 119 (222) +++.+ T Consensus 135 -v~~~~ 139 (242) T KOG3043 135 -VTLSA 139 (242) T ss_pred -EEEEC T ss_conf -88504 No 13 >PRK01395 V-type ATP synthase subunit F; Provisional Probab=65.05 E-value=8.2 Score=18.86 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=40.4 Q ss_pred EEEECCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEE Q ss_conf 99972112998899740318859920567779489999999975997599995378781247889999999886269819 Q gi|254781122|r 54 LWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINV 133 (222) Q Consensus 54 ~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i 133 (222) .||||-||+.+ |+..+.-.|| -.+..+..++|+.+.+.+|-=+++.=. ....++.++ .+|...-.+. T Consensus 7 aVvGd~Dsvlg-----F~~lG~dvfp-v~~~eEa~~~l~~La~~~y~II~ITE~-~a~~i~~~i------~~y~~~~lPa 73 (104) T PRK01395 7 GVIGDKDSILP-----FKALGFDVFP-VIEEQEARNTLRKLAMEDYAIIYITED-IAKDIPETI------ERYDNQVLPA 73 (104) T ss_pred EEECCHHHHHH-----HHHCCEEEEE-CCCHHHHHHHHHHHHHCCEEEEEEEHH-HHHHHHHHH------HHHHCCCCCE T ss_conf 99868578788-----8865804785-488799999999998679279997299-984569999------9985257877 Q ss_pred EE Q ss_conf 99 Q gi|254781122|r 134 TL 135 (222) Q Consensus 134 ~l 135 (222) ++ T Consensus 74 II 75 (104) T PRK01395 74 II 75 (104) T ss_pred EE T ss_conf 99 No 14 >pfam04914 DltD_C DltD C-terminal region. DltD is and integral membrane protein involved in the biosynthesis of D-alanyl-lipoteichoic acid. This is important in controlling the net ionic charge in lipoteichoic acid (LTA). This family is found in bacteria of the Bacillus/Clostridium group. DltD binds Dcp and ligates it with D-alanine. DltD does not ligate acyl carrier protein (ACP) with D-alanine. It also has thioesterase activity for mischarged D-alanyl-acyl carrier protein (ACP). DltD is thought to be responsible for discriminating between Dcp involved in the D-alanylation of LTA, and ACP involved in fatty acid biosynthesis. This family consists of the C-terminal region of DltD. Probab=59.84 E-value=13 Score=17.69 Aligned_cols=41 Identities=17% Similarity=0.455 Sum_probs=33.4 Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH Q ss_conf 99205677794899999999759975999953787812478 Q gi|254781122|r 76 IFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYA 116 (222) Q Consensus 76 i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~ 116 (222) .-+....++.||++-|+.+.+.+.+..+++--..|.-.||+ T Consensus 27 ~~y~~SpEy~Dlql~L~~~~~~~~~vlfVi~PvNgkWydyt 67 (130) T pfam04914 27 ESYTESPEYNDLQLVLDQFAKAGADVLFVIPPVNGKWYDYT 67 (130) T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHC T ss_conf 77113844068999999999849941898547770588870 No 15 >PRK00726 murG N-acetylglucosaminyl transferase; Provisional Probab=54.84 E-value=16 Score=16.95 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=7.6 Q ss_pred CEEEEEEECCC Q ss_conf 40699998779 Q gi|254781122|r 9 FIDFAILLNGD 19 (222) Q Consensus 9 ~~~~~Ii~nG~ 19 (222) |.+++|.+||. T Consensus 1 mkkI~i~~GGT 11 (359) T PRK00726 1 MKKILLAGGGT 11 (359) T ss_pred CCEEEEEECCC T ss_conf 98899995886 No 16 >PRK06932 glycerate dehydrogenase; Provisional Probab=54.20 E-value=17 Score=16.89 Aligned_cols=112 Identities=15% Similarity=0.001 Sum_probs=62.9 Q ss_pred CEEEEEEECCCCCCCHHHHHHHCC-CCEEEEEHH-HHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEEE-ECCCCCCC Q ss_conf 406999987799981688985134-949999188-899998899734999721129988997403188599-20567779 Q gi|254781122|r 9 FIDFAILLNGDIRVTNRLLCAIES-CKVIAADGG-ICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIF-YPNDKDMA 85 (222) Q Consensus 9 ~~~~~Ii~nG~~~~~~~~~~~~~~-~~iIavDgG-a~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~-~~~dkD~T 85 (222) ||+++++=....|....+. ..+. ..+..-|.- .+-+.+.=---|.+|.=.+.++.+.++..++.+.|. +-.-=|.- T Consensus 1 ~mkiv~ld~~~~~~~~~~~-~~~~~~~~~~~~~t~~eel~e~i~dad~ii~~~~~i~~~vl~~ap~LK~I~~~g~G~D~I 79 (314) T PRK06932 1 MMKIVFLDSTAIPKHISIP-RPSFEHEWTEYDHTSADQTIERAKDADIVITSKVIFSRETLQQLPKLKLIAITATGTNNV 79 (314) T ss_pred CCEEEEEECCCCCCCCCCC-CCCCCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCEEEEECCCCCCCC T ss_conf 9659998544478877631-135685079789999899999857998999789863999995399980998898345647 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 4899999999759975999953787812478899999998 Q gi|254781122|r 86 DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATS 125 (222) Q Consensus 86 D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~ 125 (222) |.+.| .+++..-...-|..+..=-+|+++-+..+.+ T Consensus 80 D~~aa----~~~gI~V~n~pg~~~~~VAE~~i~liL~l~r 115 (314) T PRK06932 80 DLVAA----KELGITVKNVTGYSSTTVPEHVLGLIFALKH 115 (314) T ss_pred CHHHH----HHCCEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 89999----7499799938986727899999999999997 No 17 >pfam00365 PFK Phosphofructokinase. Probab=51.56 E-value=19 Score=16.62 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=57.7 Q ss_pred EEEEEEECC-CCCCCHHH-----HHHH-CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHC-CC----CEEE Q ss_conf 069999877-99981688-----9851-34949999188899998899734999721129988997403-18----8599 Q gi|254781122|r 10 IDFAILLNG-DIRVTNRL-----LCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWS-SI----KRIF 77 (222) Q Consensus 10 ~~~~Ii~nG-~~~~~~~~-----~~~~-~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~-~~----~~i~ 77 (222) +|+.|+..| +.|.-+.. .... ....++++-.|..-|++..+. -++.+....+. .- +.-+ T Consensus 1 KrI~IltsGG~~pG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~---------~l~~~~v~~~~~~gGt~LgtsR 71 (279) T pfam00365 1 KKIGVLTSGGDAPGMNAAIRAVVRSAIAEGLEVYGIYEGYAGLVAGNIK---------QLDWESVSDIIQRGGTFIGSAR 71 (279) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEE---------ECCHHHHHHHHHCCCCCCCCCC T ss_conf 9599990788866789999999999987799999990567788269824---------0988889889965984124667 Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 2056777948999999997599759999537878 Q gi|254781122|r 78 YPNDKDMADGEIAVHKALQSGARNIILVGSISGQ 111 (222) Q Consensus 78 ~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~ 111 (222) +++.++.-+.+++++.+.+++.+-.+++|| .|. T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~Id~li~IGG-d~S 104 (279) T pfam00365 72 CPEFREREGRLKAAENLKKHGIDALVVIGG-DGS 104 (279) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECC-CHH T ss_conf 775545667999999999848997999669-568 No 18 >PRK12446 N-acetylglucosaminyl transferase; Reviewed Probab=51.52 E-value=19 Score=16.62 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=6.5 Q ss_pred CEEEEEEECCC Q ss_conf 40699998779 Q gi|254781122|r 9 FIDFAILLNGD 19 (222) Q Consensus 9 ~~~~~Ii~nG~ 19 (222) |.+++|.+||. T Consensus 1 MkkIii~~GGT 11 (352) T PRK12446 1 MKKIVFTGGGS 11 (352) T ss_pred CCEEEEEECCC T ss_conf 98799995875 No 19 >KOG2724 consensus Probab=49.97 E-value=16 Score=17.01 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=50.2 Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEE Q ss_conf 89974031885992056777948999999997599759999537878124788999999988626981999948918999 Q gi|254781122|r 65 TLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFI 144 (222) Q Consensus 65 ~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~ 144 (222) |...+|.+.-.+.+.-+|+++|.-..-.++.-..- ..+-+ . -|.|-.++||++-. ...+++++.-...+++..+ T Consensus 379 edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~-~k~ql---L-vradtnlGnilLN~-Ll~kgMkctr~gknnvlIv 452 (487) T KOG2724 379 EDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDR-GKFQL---L-VRADTNLGNILLNS-LLNKGMKCTRVGKNNVLIV 452 (487) T ss_pred CCCCHHCCCCCEEEEECCCCCCCCCCEEECCCCCC-CCEEE---E-EHHCCCHHHHHHHH-HHCCCCCCEECCCCCEEEE T ss_conf 75410014542378734410115543120342546-51246---5-32004334789987-6137886422167745899 Q ss_pred EEC Q ss_conf 967 Q gi|254781122|r 145 LVP 147 (222) Q Consensus 145 l~~ 147 (222) +.+ T Consensus 453 cvp 455 (487) T KOG2724 453 CVP 455 (487) T ss_pred EEC T ss_conf 708 No 20 >KOG0228 consensus Probab=48.27 E-value=8.8 Score=18.68 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=23.8 Q ss_pred CCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH Q ss_conf 9734999721129988997403188599205677794899999999 Q gi|254781122|r 50 VVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKAL 95 (222) Q Consensus 50 i~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~ 95 (222) ..-.+.||++|..+. .+.||..++|.+.++++=. T Consensus 277 ~~d~Y~IG~yd~~~~------------~fvpd~~~~~~~~dlr~Dy 310 (571) T KOG0228 277 SNDQYFIGTYDGEKD------------TFVPDDGFSRVSVDLRYDY 310 (571) T ss_pred EEEEEEEECCCCCCC------------EEECCCCCCCCCCCCCCCC T ss_conf 057899861468753------------4613688533432246430 No 21 >TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis. Probab=47.72 E-value=19 Score=16.60 Aligned_cols=69 Identities=23% Similarity=0.206 Sum_probs=32.7 Q ss_pred CEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEE----EECCCCCCCHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 4999918889999889973499972112998899740318859----920567779489999999975997599995378 Q gi|254781122|r 34 KVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRI----FYPNDKDMADGEIAVHKALQSGARNIILVGSIS 109 (222) Q Consensus 34 ~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i----~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~ 109 (222) .++++=.|..=|.+-.+.| |+|-.- .+....-+.+ |+|.=|..-==|||++.+++++.+..|++|| - T Consensus 31 EVyG~~~GY~GLi~g~i~~------l~~~~V--~~Ii~~GGT~L~tAR~~EFK~~evR~kA~~nLK~~GI~~LVViGG-D 101 (302) T TIGR02482 31 EVYGIRRGYKGLINGKIVP------LKSKAV--SGIISKGGTILGTARCPEFKTEEVREKAVENLKKLGIEALVVIGG-D 101 (302) T ss_pred EEEEEECCCCCCCCCEEEC------CCCCCH--HCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECC-C T ss_conf 0689873542130441342------466440--010015883331147854568789999999988748866899868-4 Q ss_pred CC Q ss_conf 78 Q gi|254781122|r 110 GQ 111 (222) Q Consensus 110 G~ 111 (222) |+ T Consensus 102 GS 103 (302) T TIGR02482 102 GS 103 (302) T ss_pred HH T ss_conf 40 No 22 >cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). Probab=47.21 E-value=22 Score=16.20 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=32.8 Q ss_pred CCCEEEEEHHHHHHHH------------------CCCCCEEEEECCCCCCHHHHHHHCCCCE-EEECCCCCCCHHHHHHH Q ss_conf 4949999188899998------------------8997349997211299889974031885-99205677794899999 Q gi|254781122|r 32 SCKVIAADGGICHASQ------------------LKVVPELWIGDFDSVDRTLLQQWSSIKR-IFYPNDKDMADGEIAVH 92 (222) Q Consensus 32 ~~~iIavDgGa~~l~~------------------~~i~Pd~iiGDfDSi~~~~~~~~~~~~~-i~~~~dkD~TD~ekAL~ 92 (222) .+.++|+|.-+.+--+ ..+.||+||+.-..-.++..+.++..+. +.....++..|....++ T Consensus 20 ~d~iVGv~~~~~~p~~~~~~p~vG~~~~p~~E~I~~L~PDLVi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~ 99 (245) T cd01144 20 GDQLVGVTDYCDYPPEAKKLPRVGGFYQLDLERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIR 99 (245) T ss_pred CCCEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH T ss_conf 98079985788994887148833788899999995259964774268776889998760497699848999999999999 Q ss_pred HH Q ss_conf 99 Q gi|254781122|r 93 KA 94 (222) Q Consensus 93 ~~ 94 (222) .+ T Consensus 100 ~l 101 (245) T cd01144 100 RL 101 (245) T ss_pred HH T ss_conf 99 No 23 >TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. Probab=46.90 E-value=22 Score=16.17 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=46.4 Q ss_pred HHHCC-CCCEEEEECCCCCCHHH--HHHH---C-CCCEEE---ECCCCCCCHHHHHHHHHH----HCCCCEEEEEECCCC Q ss_conf 99889-97349997211299889--9740---3-188599---205677794899999999----759975999953787 Q gi|254781122|r 45 ASQLK-VVPELWIGDFDSVDRTL--LQQW---S-SIKRIF---YPNDKDMADGEIAVHKAL----QSGARNIILVGSISG 110 (222) Q Consensus 45 l~~~~-i~Pd~iiGDfDSi~~~~--~~~~---~-~~~~i~---~~~dkD~TD~ekAL~~~~----~~~~~~i~i~gg~~G 110 (222) +..++ +.|+.++=++-++.+-. +|.. + +..+++ |.||= +||+|..+. +......+++.|.+| T Consensus 312 ~~~~gg~~~~~~~~~l~~~~gv~GRmE~v~~~~~~f~V~VDYAHTPDa----Lek~L~~lr~~~~~~~~g~L~~vFGcGG 387 (494) T TIGR01085 312 LLHLGGIDLEDIVAALEKLRGVPGRMELVDGGQQKFLVIVDYAHTPDA----LEKVLRTLRAIKLKHKKGRLIVVFGCGG 387 (494) T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEEECCCHHH----HHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 997338889999989873489987312302789996079971488058----9999999999984258982799981578 Q ss_pred CCHHH----HHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 81247----889999999886269819999489 Q gi|254781122|r 111 QRFDY----ALQHITLATSLKKKNINVTLTSGI 139 (222) Q Consensus 111 ~R~DH----~lani~~L~~~~~~~~~i~l~~~~ 139 (222) .| |- .|+.|. .+|+. .+++.+|+ T Consensus 388 dR-Dr~KRplMG~iA--~~~AD---~~ilT~DN 414 (494) T TIGR01085 388 DR-DRGKRPLMGAIA--EQLAD---LIILTSDN 414 (494) T ss_pred CC-CCCCCHHHHHHH--HHHCC---EEEEECCC T ss_conf 99-844575899999--98298---68983688 No 24 >smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation. Probab=44.09 E-value=24 Score=15.89 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=41.3 Q ss_pred CCCCCHHHHHHHCCCCE----EEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 11299889974031885----9920567779489999999975997599995378781247889999999 Q gi|254781122|r 59 FDSVDRTLLQQWSSIKR----IFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLAT 124 (222) Q Consensus 59 fDSi~~~~~~~~~~~~~----i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~ 124 (222) .||-.+-..++.+..+. ....+ -|....+.+++.+.+. ++-++..||.+-++-|++-..+.-+. T Consensus 16 ~d~n~~~l~~~l~~~G~~~~~~~~v~-Dd~~~i~~~l~~~~~~-~DlIittGG~g~g~~D~t~~al~~~~ 83 (135) T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVP-DDKEAIKEALREALER-ADLVITTGGTGPGPDDVTPEAVAEAL 83 (135) T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEC-CCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCHHHHHHHHC T ss_conf 32589999999998899899987989-9999999999998414-89999828878999865899999973 No 25 >pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown. Probab=42.66 E-value=25 Score=15.75 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=30.0 Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCHHHHHHH Q ss_conf 97403188599205677794899999999759975999953787-812478899 Q gi|254781122|r 67 LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISG-QRFDYALQH 119 (222) Q Consensus 67 ~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G-~R~DH~lan 119 (222) ++|- +.+....+|||..+| .+++.+.+.+.+.+. +||-++ --+|.++.. T Consensus 4 ~~wr-~~H~~liDPdk~~~~--~~~~~~~~sgtDaI~-VGGS~~~~~~d~~v~~ 53 (231) T pfam01884 4 LEWR-KVHLTLLDPDETNPE--EIIEIVAESGTDAIM-IGGSTGGVTLDNVVRL 53 (231) T ss_pred HHHH-CCCEEEECCCCCCCH--HHHHHHHHCCCCEEE-ECCCCCCCCHHHHHHH T ss_conf 6431-063688789999969--999999974999999-8898888568999999 No 26 >PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional Probab=42.12 E-value=26 Score=15.70 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=17.4 Q ss_pred CCCCHHHHHHHHHHHCCCCE--EEEEECCCCCCHHHHHH Q ss_conf 77794899999999759975--99995378781247889 Q gi|254781122|r 82 KDMADGEIAVHKALQSGARN--IILVGSISGQRFDYALQ 118 (222) Q Consensus 82 kD~TD~ekAL~~~~~~~~~~--i~i~gg~~G~R~DH~la 118 (222) +--=.+-+||+.+++.+++. -+.+.| ||| +-|.|. T Consensus 308 ~RC~~LGqAIrrAIeSy~eD~L~V~I~G-TGG-lSHQL~ 344 (444) T PRK13372 308 RRCYELGQAIRRAIDKWDADPLNVQIWG-TGG-MSHQLQ 344 (444) T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCC-CCCCCC T ss_conf 8899999999999961785352599994-576-321037 No 27 >PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Probab=41.27 E-value=27 Score=15.62 Aligned_cols=112 Identities=11% Similarity=0.155 Sum_probs=67.8 Q ss_pred CEEEEEE-ECCCCCC-CHHH---HHHH----CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCC---EE Q ss_conf 4069999-8779998-1688---9851----34949999188899998899734999721129988997403188---59 Q gi|254781122|r 9 FIDFAIL-LNGDIRV-TNRL---LCAI----ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIK---RI 76 (222) Q Consensus 9 ~~~~~Ii-~nG~~~~-~~~~---~~~~----~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~---~i 76 (222) -.|+-|+ .||+.|. ++.+ ...+ ....+++-=||..-+.+...+ -++++....|.+.+ .+ T Consensus 72 plriGvvlsGgqAPGghNVI~Gl~d~lk~~n~~s~l~GF~~G~~Gl~~~~~~---------elt~~~i~~~rN~GGFd~l 142 (557) T PRK07085 72 PLKVGVILSGGQAPGGHNVIAGLFDGLKKFNPDSKLFGFIGGPLGLLNNKYI---------ELTEEVIDEYRNTGGFDMI 142 (557) T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEE---------EECHHHHHHHHCCCCCCEE T ss_conf 8179999627999837888999999999768997799987770444069779---------9489999987628885243 Q ss_pred EECCCCCCC--HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHCCCEEEE Q ss_conf 920567779--48999999997599759999537878124788999999988-626981999 Q gi|254781122|r 77 FYPNDKDMA--DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSL-KKKNINVTL 135 (222) Q Consensus 77 ~~~~dkD~T--D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~-~~~~~~i~l 135 (222) ...++|=.| ++++|++.|.+++.+-.+++||. ++ ..|-.+|..| .+++.++.. T Consensus 143 gs~r~ki~t~e~~~~~~~t~~~l~LdgLviiGGd-~s-----ntnAa~LAEyf~~~~~~t~V 198 (557) T PRK07085 143 GSGRTKIETEEQKEACLQTVKKLKLDGLVIIGGD-DS-----NTNAAILAEYFAKHNCKTQV 198 (557) T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC-CC-----HHHHHHHHHHHHHHCCCEEE T ss_conf 0686545899999999999998599879997988-72-----16389999999982998379 No 28 >cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. Probab=38.83 E-value=21 Score=16.23 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=9.4 Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 777948999999997599759999 Q gi|254781122|r 82 KDMADGEIAVHKALQSGARNIILV 105 (222) Q Consensus 82 kD~TD~ekAL~~~~~~~~~~i~i~ 105 (222) .|.-|+|++++.....+...++.+ T Consensus 300 S~~ld~e~~i~~~~~~~~~~~~~F 323 (343) T cd01567 300 SGDLDTEEAIELLLEQGASPNDAF 323 (343) T ss_pred ECCCCHHHHHHHHHHCCCCCCEEE T ss_conf 899988999999997389875399 No 29 >PRK01160 hypothetical protein; Provisional Probab=38.65 E-value=29 Score=15.36 Aligned_cols=79 Identities=19% Similarity=0.074 Sum_probs=46.9 Q ss_pred CCCCCCCHH-HHHHHCCCCEEEE-EHHHHHHHHCCCCCEEEEECCCCCCHHHHHH----HCCCCEEEECCCCCCCHHHHH Q ss_conf 779998168-8985134949999-1888999988997349997211299889974----031885992056777948999 Q gi|254781122|r 17 NGDIRVTNR-LLCAIESCKVIAA-DGGICHASQLKVVPELWIGDFDSVDRTLLQQ----WSSIKRIFYPNDKDMADGEIA 90 (222) Q Consensus 17 nG~~~~~~~-~~~~~~~~~iIav-DgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~----~~~~~~i~~~~dkD~TD~ekA 90 (222) -|+.+.+.. .....++.++|+| |-=..+++++|++|++.|=|.---..+.... .+..-.+.-|+-+=+-++-.| T Consensus 24 ~g~~~~~~~~~~~~l~~~~iItVGDVtt~~ll~~g~~P~laIiDgkTkR~~~~~~~~~~~~~~l~v~NPaG~IT~~l~~~ 103 (178) T PRK01160 24 RGDIPEPYLKVRDILEKHPLITVGDVVTENLLRVGLKPFLAIYDLKTKRGEYKPEIFEHEEVSITVKNPPGTITLDLLRA 103 (178) T ss_pred CCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHH T ss_conf 28985688999986438977997138789999779998788861702002676100235563699889997037999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254781122|r 91 VHKAL 95 (222) Q Consensus 91 L~~~~ 95 (222) ++.+. T Consensus 104 i~~A~ 108 (178) T PRK01160 104 IKKAY 108 (178) T ss_pred HHHHH T ss_conf 99998 No 30 >pfam12000 DUF3495 Domain of unknown function (DUF3495). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 170 amino acids in length. This domain is found associated with pfam00534. This domain has a single completely conserved residue G that may be functionally important. Probab=37.68 E-value=29 Score=15.35 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=23.9 Q ss_pred EEEHHHHHHHHCCCCCEEEEECCC---CCCHHHHHHHCCCCEEE Q ss_conf 991888999988997349997211---29988997403188599 Q gi|254781122|r 37 AADGGICHASQLKVVPELWIGDFD---SVDRTLLQQWSSIKRIF 77 (222) Q Consensus 37 avDgGa~~l~~~~i~Pd~iiGDfD---Si~~~~~~~~~~~~~i~ 77 (222) +|=..+..|.+.|..||+|||--= ++ -+++.+++.+.+. T Consensus 52 av~~aa~~L~~~Gf~PDvIi~H~GWGe~L--fLkdv~P~a~li~ 93 (172) T pfam12000 52 AVARAARQLRAQGFRPDVIVAHPGWGETL--FLKDVWPDARLIG 93 (172) T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHH--CHHHHCCCCCEEE T ss_conf 99999999997499999898758764010--5777765887578 No 31 >pfam10185 Mesd Chaperone for wingless signalling and trafficking of LDL receptor. Mesd is a family of highly conserved proteins found from nematodes to humans. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs). The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation). Probab=37.61 E-value=25 Score=15.74 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=49.8 Q ss_pred HHHHHHCCCCEEEEEECCCCCCHH---HHHHHHHH--HHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEEEEEC Q ss_conf 999997599759999537878124---78899999--9988626981999948918999967956997059808999751 Q gi|254781122|r 91 VHKALQSGARNIILVGSISGQRFD---YALQHITL--ATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCL 165 (222) Q Consensus 91 L~~~~~~~~~~i~i~gg~~G~R~D---H~lani~~--L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~g~~~Sl~p~ 165 (222) |-...++|-.-.+++ ...|.--- ..+..++- |++. ...+...+++++-.||.+..|...++... .|+.- T Consensus 55 iLkmSKKGktLMmFv-~Vsgnpt~~Ete~it~lWQ~sL~Nn-hi~vqr~~vddnRaIFmfkDGs~AwE~Kd----fLv~Q 128 (158) T pfam10185 55 LLKMSKKGRTLMTFV-TVSGNPTRKETEEITKLWQTSLWNN-HIDAQRFVVDDNRAIFMFKDGSQAWEAKD----FLVEQ 128 (158) T ss_pred HHHHHHCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHC-CEEEEEEEECCCEEEEEECCCCHHHHHHH----HHHCC T ss_conf 997631597489999-6489977888999999999887525-43579998458648999637215451665----63156 Q ss_pred CCCCEEEEECEEEECCCC Q ss_conf 577625730416653787 Q gi|254781122|r 166 EDIENITITGAKYTLSHH 183 (222) Q Consensus 166 ~~~~~vt~~Glky~L~~~ 183 (222) ..|..||++|-.||=.+. T Consensus 129 ~rc~~VTiE~~~ypGk~~ 146 (158) T pfam10185 129 ERCAEVTIEGQEYPGKAK 146 (158) T ss_pred CCCCEEEEECCCCCCCCC T ss_conf 532147762662578776 No 32 >cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior. Probab=37.49 E-value=30 Score=15.25 Aligned_cols=91 Identities=16% Similarity=0.060 Sum_probs=56.8 Q ss_pred CCCEEEEEEECC-CCCCCHHH-----H-HHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEE--- Q ss_conf 874069999877-99981688-----9-8513494999918889999889973499972112998899740318859--- Q gi|254781122|r 7 NKFIDFAILLNG-DIRVTNRL-----L-CAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRI--- 76 (222) Q Consensus 7 ~~~~~~~Ii~nG-~~~~~~~~-----~-~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i--- 76 (222) .+.||++|+-.| +.|--+.. . .......++++-.|..=|.+..+.| + +..+++ .+...-+.+ T Consensus 387 ~~~~rIaIlt~GgdapGMNAAiRA~Vr~~~~~G~~v~gI~~Gf~GL~~g~i~~-l---~~~~V~----g~~~~GGt~LgT 458 (762) T cd00764 387 KTNLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVE-L---GWIDVG----GWTGRGGSELGT 458 (762) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEE-C---CHHHHC----CHHHCCCEEECC T ss_conf 67706999856889614779999999999988999999925843674798677-7---845638----866468803265 Q ss_pred -EECCCCCCCHHHHHHHHHHHCCCCEEEEEECC Q ss_conf -92056777948999999997599759999537 Q gi|254781122|r 77 -FYPNDKDMADGEIAVHKALQSGARNIILVGSI 108 (222) Q Consensus 77 -~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~ 108 (222) +..| +.|.+++...+.+.+.+..+++||+ T Consensus 459 ~R~~p---~~~~~~~a~~l~~~~Id~LivIGG~ 488 (762) T cd00764 459 KRTLP---KKDLETIAYNFQKYGIDGLIIVGGF 488 (762) T ss_pred CCCCC---CCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 78897---3449999999998199889996680 No 33 >cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids. Probab=37.18 E-value=31 Score=15.22 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=57.3 Q ss_pred EEEEEEECC-CCCCCHHH-----HHHH-CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH-CCCC----EEE Q ss_conf 069999877-99981688-----9851-3494999918889999889973499972112998899740-3188----599 Q gi|254781122|r 10 IDFAILLNG-DIRVTNRL-----LCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQW-SSIK----RIF 77 (222) Q Consensus 10 ~~~~Ii~nG-~~~~~~~~-----~~~~-~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~-~~~~----~i~ 77 (222) .|+.|+..| +.|.-+.. .... ....++++=.|..-|++.. +--++++....+ ..-+ .-+ T Consensus 1 KrIaIltsGGd~pGmNa~Ir~vv~~a~~~g~~v~Gi~~G~~GL~~~~---------~~~l~~~~v~~i~~~GGt~LgtsR 71 (317) T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGD---------IVPLDRYSVSDIINRGGTFLGSAR 71 (317) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCC---------EEECCHHHHHHHHHCCCCCCCCCC T ss_conf 95999957888568899999999999878999999825677870798---------162899999879865995014677 Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 2056777948999999997599759999537878 Q gi|254781122|r 78 YPNDKDMADGEIAVHKALQSGARNIILVGSISGQ 111 (222) Q Consensus 78 ~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~ 111 (222) +++.++.-+.+++++.+.+++.+-.+++|| .|. T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG-dgS 104 (317) T cd00763 72 FPEFKDEEGQAKAIEQLKKHGIDALVVIGG-DGS 104 (317) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECC-CHH T ss_conf 875455678999999999829998999569-458 No 34 >TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex. Probab=36.96 E-value=31 Score=15.20 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=70.6 Q ss_pred CCEEEE-EEECCCCC-CCHHHH---HHH----CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCC-E-- Q ss_conf 740699-99877999-816889---851----34949999188899998899734999721129988997403188-5-- Q gi|254781122|r 8 KFIDFA-ILLNGDIR-VTNRLL---CAI----ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIK-R-- 75 (222) Q Consensus 8 ~~~~~~-Ii~nG~~~-~~~~~~---~~~----~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~-~-- 75 (222) +-++|= |+.||+.| -|+.+. ..+ .+++++|==||..=|++...+ -++.+....|++.+ . T Consensus 73 ~~l~~GviLSGGqAPGGHNVi~GLFD~lk~~np~SkLyGF~~Gp~GL~~~~~~---------elT~~~i~~YRN~GGFD~ 143 (566) T TIGR02477 73 QPLKVGVILSGGQAPGGHNVISGLFDALKKLNPESKLYGFLGGPEGLLDNNYV---------ELTKELIDEYRNTGGFDI 143 (566) T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE---------EECHHHHHCCCCCCCEEE T ss_conf 87568898757989771146777899999737767200102074443158715---------763788722278877420 Q ss_pred EEECCCCCCC--HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 9920567779--489999999975997599995378781247889999999886269819999 Q gi|254781122|r 76 IFYPNDKDMA--DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLT 136 (222) Q Consensus 76 i~~~~dkD~T--D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~ 136 (222) +=.-.+|=.| ++++|++.|.+++-+-.||+||- ++=-|=.+ |.-.|++++.++.++ T Consensus 144 iGSGRtKI~T~Eq~~~al~~~k~l~LdgLVIIGGD-dSNTnAA~----LAEyF~~~~~~t~vi 201 (566) T TIGR02477 144 IGSGRTKIETEEQFAKALETAKKLKLDGLVIIGGD-DSNTNAAL----LAEYFAKKGLKTQVI 201 (566) T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHH----HHHHHHHCCCCCEEE T ss_conf 01685455688899999999876089648997479-86799999----999999738992278 No 35 >pfam04439 Adenyl_transf Streptomycin adenylyltransferase. Also known as Aminoglycoside 6- adenylyltransferase (EC:2.7.7.-), this protein confers resistance to aminoglycoside antibiotics. Probab=36.64 E-value=31 Score=15.16 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=56.2 Q ss_pred EEEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCC---EEEECCCCCCCHHHH Q ss_conf 99987799981688985134949999188899998899734999721129988997403188---599205677794899 Q gi|254781122|r 13 AILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIK---RIFYPNDKDMADGEI 89 (222) Q Consensus 13 ~Ii~nG~~~~~~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~---~i~~~~dkD~TD~ek 89 (222) +|+++|....++.....++.-.| -+++-|++|...+ ..|...-+ +..+|.+.+...-+ T Consensus 23 AV~l~GSR~n~n~~kD~fqDyDI-----------------vyvv~d~~~f~~d-~~Wi~~FG~~li~q~pe~~~~~~~~- 83 (282) T pfam04439 23 AVALEGSRTNPNIPKDEFQDYDI-----------------VYVVEDIEPFISD-DSWLLKFGNPIMMQEPEDMELFPPD- 83 (282) T ss_pred EEEEECCCCCCCCCCCCCCCCCE-----------------EEEECCCHHHHCC-CHHHHHHCHHHHHCCCCHHCCCCCC- T ss_conf 99986788899999877766758-----------------9996783776038-3799986779881175000347865- Q ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCEE Q ss_conf 9999997599759999537878124788999999988626--9819999489189 Q gi|254781122|r 90 AVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKK--NINVTLTSGIEEV 142 (222) Q Consensus 90 AL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~--~~~i~l~~~~~~i 142 (222) ....+.-.+++ ..|.|+|-+|.-+.-+.++... ..-.+|+|..+.+ T Consensus 84 -----~~~~~~yLmlF--eDGnrIDltl~~~~~l~~~~~~~d~l~~vLlDKd~~~ 131 (282) T pfam04439 84 -----LGKRYSYLMLF--EDGNKIDLTLIPKKELIRYVQDSDGLVKVLIDKDHLI 131 (282) T ss_pred -----CCCCEEEEEEE--CCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf -----68873489997--6885555896689999999854688728988478886 No 36 >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process. Probab=36.62 E-value=21 Score=16.32 Aligned_cols=111 Identities=12% Similarity=0.013 Sum_probs=63.7 Q ss_pred CCCEEEEEHHHHHHHHC----------CCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCE Q ss_conf 49499991888999988----------99734999721129988997403188599205677794899999999759975 Q gi|254781122|r 32 SCKVIAADGGICHASQL----------KVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARN 101 (222) Q Consensus 32 ~~~iIavDgGa~~l~~~----------~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~ 101 (222) .+.|.|+|=........ +-.|.+.+|||-|++.......=....++|-|.+ |+.++|..+..+--.+ T Consensus 76 GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~~~G~fD~VV~mDvlIHYp~~---d~~~~l~~Laslt~~~ 152 (224) T TIGR02021 76 GAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESLELGKFDAVVAMDVLIHYPAE---DIAKALEHLASLTKER 152 (224) T ss_pred CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCCCEEEEEHHHHHCCHH---HHHHHHHHHHHHHCCC T ss_conf 9868662376899999986210021016700354530444138985556752122320222---2799999988743586 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEE Q ss_conf 999953787812478899999998862698199994891899996 Q gi|254781122|r 102 IILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILV 146 (222) Q Consensus 102 i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~ 146 (222) +++-.| --.-+=..+-.|.-++-=.++...+.++.+.+.-+.+. T Consensus 153 ~~ftfA-P~T~~l~~~~~IG~lFP~s~R~t~~~~h~~~~~~R~l~ 196 (224) T TIGR02021 153 VIFTFA-PKTAYLAFLKAIGELFPRSDRATAIYLHPEKDLERALG 196 (224) T ss_pred EEEEEC-CCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHH T ss_conf 489867-87678999998510278898885152078603889976 No 37 >PRK11106 queuosine biosynthesis protein QueC; Provisional Probab=36.57 E-value=32 Score=15.16 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=56.2 Q ss_pred CEEEEEEECCCCCCCHHHHHHHCC-CCE--EEEEHHHH----------HHHHCCCCCEEEEECCCCCCHHHHHHHC--CC Q ss_conf 406999987799981688985134-949--99918889----------9998899734999721129988997403--18 Q gi|254781122|r 9 FIDFAILLNGDIRVTNRLLCAIES-CKV--IAADGGIC----------HASQLKVVPELWIGDFDSVDRTLLQQWS--SI 73 (222) Q Consensus 9 ~~~~~Ii~nG~~~~~~~~~~~~~~-~~i--IavDgGa~----------~l~~~~i~Pd~iiGDfDSi~~~~~~~~~--~~ 73 (222) |+++++++.|...+.-.+....+. ..+ |-.|=|-. .+..+|+.++.|+ |+|.+..-...... +. T Consensus 1 MkkavVLlSGGlDStt~L~~a~~~~~~v~alsfdYGQrh~~El~~A~~ia~~~gv~~h~vi-dl~~l~~~~~SaLt~~~i 79 (231) T PRK11106 1 MKRAVVVFSGGQDSTTCLIQALQQYDEVHCITFDYGQRHRAEIDVARELALKLGARAHKVL-DVTLLNELAVSSLTRDSI 79 (231) T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE-CCHHHHHHCCCCCCCCCC T ss_conf 9808999078789999999999819949999877786719999999999998598400675-327777752356677787 Q ss_pred C-----------EEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 8-----------599205677794899999999759975999953 Q gi|254781122|r 74 K-----------RIFYPNDKDMADGEIAVHKALQSGARNIILVGS 107 (222) Q Consensus 74 ~-----------~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg 107 (222) . ...+-|--+.-=+..|.-|+...+++.+++ |. T Consensus 80 ~vp~~~~~~~~~p~T~VP~RN~ifLsiAaa~Ae~~ga~~I~~-G~ 123 (231) T PRK11106 80 PVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVIT-GV 123 (231) T ss_pred CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEE-EC T ss_conf 777765444578764671672999999999999859995998-04 No 38 >pfam08538 DUF1749 Protein of unknown function (DUF1749). This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. Probab=36.26 E-value=32 Score=15.13 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=27.4 Q ss_pred CCCCCCHHHHHHHHHHHC-----CCCEEEEEECCCCCCHH Q ss_conf 567779489999999975-----99759999537878124 Q gi|254781122|r 80 NDKDMADGEIAVHKALQS-----GARNIILVGSISGQRFD 114 (222) Q Consensus 80 ~dkD~TD~ekAL~~~~~~-----~~~~i~i~gg~~G~R~D 114 (222) =++|..|.+.+++|+... +...|++.|--|| -.| T Consensus 84 L~~D~~Ei~~~v~Ylr~~~~~~~~~~kIVLMGHSTG-cQD 122 (303) T pfam08538 84 LDRDDEEIQALVEYLRTTKGGTFGRRKIVLMGHSTG-SQD 122 (303) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC-CHH T ss_conf 330099999999999860567678862899845877-047 No 39 >KOG4225 consensus Probab=35.75 E-value=32 Score=15.07 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=51.2 Q ss_pred ECCCEEEEEECCCE-EEEECCCEEEEEEECCCCCEEEE----ECEEEECCCCEECCCCCEEEEEE-ECCCEEEEEECCEE Q ss_conf 48918999967956-99705980899975157762573----04166537878527875388499-84957999957909 Q gi|254781122|r 137 SGIEEVFILVPGKH-SFDLPENSVFSIVCLEDIENITI----TGAKYTLSHHSLSLGSSRAVSNV-VTKNLTIMLDQGLA 210 (222) Q Consensus 137 ~~~~~i~~l~~g~~-~~~~~~g~~~Sl~p~~~~~~vt~----~Glky~L~~~~l~~~~~~~~SN~-~~~~~~I~~~~G~l 210 (222) ...++|+++.+++- =.+..-.-+++|||..-+..++. ..-+ +--...+..|..++.=|. ...+++.+.++|.. T Consensus 250 ~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~-~~P~q~~~~g~a~A~y~F~~~s~~Els~~kge~ 328 (489) T KOG4225 250 NKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPAR-PPPQQVLEQGEAIAKYNFNADSPVELSLRKGER 328 (489) T ss_pred CCCCEEEEEEECCCCEEEEEECCEECCEECHHEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCE T ss_conf 7888899976024752101115621110010135347300137677-996555555530014787777750001036856 Q ss_pred EEEECCCCCC Q ss_conf 9997441002 Q gi|254781122|r 211 ILISRPYDLQ 220 (222) Q Consensus 211 lvi~~~kd~~ 220 (222) +...+.-|.+ T Consensus 329 v~L~r~vd~n 338 (489) T KOG4225 329 VTLTRQVDEN 338 (489) T ss_pred EEEEEECCCC T ss_conf 7887741575 No 40 >pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation. Probab=35.50 E-value=33 Score=15.05 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=40.8 Q ss_pred CCCCCHHHHHHHCCCC--EEEECCC-CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 1129988997403188--5992056-7779489999999975997599995378781247889999999 Q gi|254781122|r 59 FDSVDRTLLQQWSSIK--RIFYPND-KDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLAT 124 (222) Q Consensus 59 fDSi~~~~~~~~~~~~--~i~~~~d-kD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~ 124 (222) .||-..-..+..+..+ ...+..- -|.-..+.+|+.+.+ .++-+++.||.+-++-|++-..+.-+. T Consensus 15 ~dsn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~~DliittGG~g~g~~D~t~~al~~~~ 82 (140) T pfam00994 15 YDTNGPLLAALLREAGAEVIRYGIVPDDPEAIKEALAAAAD-EADVVITTGGTGPGPDDVTPEALAELG 82 (140) T ss_pred EEHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHH T ss_conf 88699999999998799377998978899999999999732-699999878877898985599999985 No 41 >cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin. Probab=35.50 E-value=33 Score=15.05 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=40.2 Q ss_pred CCCCCHHHHHHHCCCC--EEEE--CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 1129988997403188--5992--0567779489999999975997599995378781247889999999 Q gi|254781122|r 59 FDSVDRTLLQQWSSIK--RIFY--PNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLAT 124 (222) Q Consensus 59 fDSi~~~~~~~~~~~~--~i~~--~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~ 124 (222) .||-.+-..+..+..+ ...+ -+| |...++.+++.+.+ .++-++..||.+-|+.||+...+.-+. T Consensus 17 ~dsn~~~l~~~l~~~G~~v~~~~iv~D-d~~~i~~~l~~~~~-~~DlIIttGG~s~g~~D~t~~~l~~~g 84 (133) T cd00758 17 EDTNGPALEALLEDLGCEVIYAGVVPD-DADSIRAALIEASR-EADLVLTTGGTGVGRRDVTPEALAELG 84 (133) T ss_pred EEHHHHHHHHHHHHCCCEEEEEEEECC-CHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCHHHHHHHHC T ss_conf 973799999999988997989889897-99999999999861-499999938866798851899999853 No 42 >TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , .. Probab=34.94 E-value=30 Score=15.25 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=59.5 Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEE----CCCCCCH--HHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEE-- Q ss_conf 7779489999999975997599995----3787812--4788999999988626981999948918999967956997-- Q gi|254781122|r 82 KDMADGEIAVHKALQSGARNIILVG----SISGQRF--DYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFD-- 153 (222) Q Consensus 82 kD~TD~ekAL~~~~~~~~~~i~i~g----g~~G~R~--DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~-- 153 (222) .+..|-=+=++.+.++|+++|.++| +.-|.++ ||....+.-|.+.... .+..+++=..|+|..+....|+ T Consensus 184 r~~~~Il~Ev~~l~~~G~kEi~LLGQNVN~YRG~~frne~~~~~f~dLL~~l~r--rCe~~~~i~RIRFtsSHP~~~~D~ 261 (456) T TIGR01574 184 RPLDDILQEVQKLAEKGVKEITLLGQNVNAYRGKDFRNEGKTVDFADLLRELAR--RCEVKDGIERIRFTSSHPKDFDDD 261 (456) T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEECHHHHHHHHHH--HCCHHHCCCCEEECCCCCCCCCHH T ss_conf 574469999999986586487403653011158752258867366999999987--510221585113137878765446 Q ss_pred -----ECCCEEEEEEECC Q ss_conf -----0598089997515 Q gi|254781122|r 154 -----LPENSVFSIVCLE 166 (222) Q Consensus 154 -----~~~g~~~Sl~p~~ 166 (222) ...+..++++-+. T Consensus 262 liev~a~~~~l~~~~HLP 279 (456) T TIGR01574 262 LIEVLAKEPKLCKLLHLP 279 (456) T ss_pred HHHHHHCCCCEEEEECCC T ss_conf 878873789466664375 No 43 >pfam02568 ThiI Thiamine biosynthesis protein (ThiI). ThiI is required for thiazole synthesis, required for thiamine biosynthesis. Probab=32.49 E-value=3.9 Score=20.93 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=82.1 Q ss_pred EEEEEECCCCCCCHHHHHHH-CCCCEEEEE-----HHH-----------HHHHHC--CCCCEEEEECCCCCCHHHHHHHC Q ss_conf 69999877999816889851-349499991-----888-----------999988--99734999721129988997403 Q gi|254781122|r 11 DFAILLNGDIRVTNRLLCAI-ESCKVIAAD-----GGI-----------CHASQL--KVVPELWIGDFDSVDRTLLQQWS 71 (222) Q Consensus 11 ~~~Ii~nG~~~~~~~~~~~~-~~~~iIavD-----gGa-----------~~l~~~--~i~Pd~iiGDfDSi~~~~~~~~~ 71 (222) +++.++.|++.++-...... +...++++- .+. +.+.++ +..+.+.+=||--+-.+..+..+ T Consensus 5 k~l~LlSGGiDSpVAa~lmmkRG~~V~~vhf~~~p~~~~~~~~k~~~l~~~l~~y~~~~~~~l~vv~~~~~~~~i~~~~~ 84 (197) T pfam02568 5 KVLALLSGGIDSPVAAYLMMRRGCRVVALHFINEPGTSEEAIEKVRKLAELLAEYGTSCEGKLVVVDFTKVQKEIIEKAP 84 (197) T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCC T ss_conf 18988668712999999999879979999987999998999999999999999737887544999574999999996289 Q ss_pred CC-CEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCEEEEEEC- Q ss_conf 18-8599205677794899999999759975999953787812478899999998862698--1999948918999967- Q gi|254781122|r 72 SI-KRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNI--NVTLTSGIEEVFILVP- 147 (222) Q Consensus 72 ~~-~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~--~i~l~~~~~~i~~l~~- 147 (222) .. ..+.. | .-=+.+|=+.+.+.+++-++ .|-..|---.+++.|+.++......-+ +.+-.|.++ |.-+.. T Consensus 85 ~~~~cv~c---K-r~M~r~A~~iA~~~ga~~IV-TGEsLGQVaSQTl~nl~~i~~~~~~pilRPLig~DK~E-Ii~~Ar~ 158 (197) T pfam02568 85 EKYRCVLC---K-RCMYRAAEKVAEEEGADALV-TGESLGQVASQTLDNLRVISAATNLPILRPLIGLDKEE-IINLAKE 158 (197) T ss_pred CCCEEHHH---H-HHHHHHHHHHHHHCCCCEEE-ECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHH-HHHHHHH T ss_conf 87654569---9-99999999999984998998-47303121004531069998762485313434699999-9999999 Q ss_pred -CCEEEEECCCEEEEEEECCCCCEEEE Q ss_conf -95699705980899975157762573 Q gi|254781122|r 148 -GKHSFDLPENSVFSIVCLEDIENITI 173 (222) Q Consensus 148 -g~~~~~~~~g~~~Sl~p~~~~~~vt~ 173 (222) |++.+...+...|+++|-.+.+.-+. T Consensus 159 IGt~~~s~~~~~~C~~~p~~P~t~~~~ 185 (197) T pfam02568 159 IGTYEISIEPYDCCSVFPKHPTTRAKP 185 (197) T ss_pred HCCHHHHCCCCCCCCCCCCCCCCCCCH T ss_conf 486776628887642279989058799 No 44 >PRK05912 tyrosyl-tRNA synthetase; Validated Probab=31.01 E-value=39 Score=14.59 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=8.8 Q ss_pred HHHHCCCCCEEEEECCC Q ss_conf 99988997349997211 Q gi|254781122|r 44 HASQLKVVPELWIGDFD 60 (222) Q Consensus 44 ~l~~~~i~Pd~iiGDfD 60 (222) ++.++|..|-++|||+- T Consensus 59 ~fq~~Gh~~i~lvGg~T 75 (402) T PRK05912 59 RFQDLGHKPIFLIGDFT 75 (402) T ss_pred HHHHCCCCEEEEECCCC T ss_conf 99986996499967752 No 45 >cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants. Probab=29.90 E-value=40 Score=14.47 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=67.8 Q ss_pred CCEEEEE-EECCCCCC-CHHH---HHHH----CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCC---E Q ss_conf 7406999-98779998-1688---9851----34949999188899998899734999721129988997403188---5 Q gi|254781122|r 8 KFIDFAI-LLNGDIRV-TNRL---LCAI----ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIK---R 75 (222) Q Consensus 8 ~~~~~~I-i~nG~~~~-~~~~---~~~~----~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~---~ 75 (222) .-.|+-| +.||+.|. ++.+ ...+ .+..+++-=||..=+.+...+ -++++....|++.+ . T Consensus 71 ~~l~vGvvlsGgqAPGGHNVI~Gl~d~lk~~n~~s~l~GF~~Gp~Gl~~~~~~---------eit~~~i~~yrN~GGfdm 141 (550) T cd00765 71 PKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYI---------ELNAEYIQPYRNTGGFDM 141 (550) T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEE---------EECHHHHHHHHCCCCCCC T ss_conf 87189999857999951574987999999649887799975784232069679---------808999987651888510 Q ss_pred EEECCCC--CCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-HCCCEEEE Q ss_conf 9920567--779489999999975997599995378781247889999999886-26981999 Q gi|254781122|r 76 IFYPNDK--DMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLK-KKNINVTL 135 (222) Q Consensus 76 i~~~~dk--D~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~-~~~~~i~l 135 (222) +...++| ..-++++|++.|.+++-+-.+++||. ++ -.|-.+|+.|- +.+.++.. T Consensus 142 i~sgr~ki~t~eq~~~~~~~~~~l~LdgLVIiGGd-dS-----nTnaa~LAEyf~~~~~~t~V 198 (550) T cd00765 142 ICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGD-DS-----NTNAALLAENFRSKGLKTRV 198 (550) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC-CC-----HHHHHHHHHHHHHCCCCCEE T ss_conf 36885624899999999999998599879996898-73-----48799999999964999559 No 46 >PRK08349 hypothetical protein; Validated Probab=29.16 E-value=7.4 Score=19.15 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=81.9 Q ss_pred EEEEEEECCCCCCCHHHHHHH-CCCCEEEE--EHHHHH----------HHHC--CCCCEEEEECCCCCCHHHHHHHCCCC Q ss_conf 069999877999816889851-34949999--188899----------9988--99734999721129988997403188 Q gi|254781122|r 10 IDFAILLNGDIRVTNRLLCAI-ESCKVIAA--DGGICH----------ASQL--KVVPELWIGDFDSVDRTLLQQWSSIK 74 (222) Q Consensus 10 ~~~~Ii~nG~~~~~~~~~~~~-~~~~iIav--DgGa~~----------l~~~--~i~Pd~iiGDfDSi~~~~~~~~~~~~ 74 (222) |+++.++.|++.++-.-.... +...++++ +.|-.. +.++ +-..++.+=||--+..+..+.... T Consensus 1 ~Kvl~LlSGGiDSPVAa~~mmKRG~~V~~lhf~~~~~~~~kv~~~~~~L~~~~~~~~~~~~iv~~~~~~~~i~~~i~~-- 78 (198) T PRK08349 1 MKVVALLSSGIDSPVAIYLMLSRGVEIYPLHFRQDEKKEHKARELVEILQEIHGGKVKDPVIVDAYEVQGPVFEKLRE-- 78 (198) T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH-- T ss_conf 949999658843899999999779979999863877889999999999999708887528997722532899999986-- Q ss_pred EEEECCCCCCCH------HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCEEEEEE Q ss_conf 599205677794------899999999759975999953787812478899999998862698--199994891899996 Q gi|254781122|r 75 RIFYPNDKDMAD------GEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNI--NVTLTSGIEEVFILV 146 (222) Q Consensus 75 ~i~~~~dkD~TD------~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~--~i~l~~~~~~i~~l~ 146 (222) ..+++..+= .-.|=+.+.+.++..++ .|=..|-=--||+.|+.+.....+.-+ +.+-.|.++.|-.-. T Consensus 79 ---~~~~~~~~vl~rr~M~riA~~iA~~~g~~aiv-TGEsLGQVASQTl~NL~~i~~~~~~pVlRPLig~DK~EII~~Ar 154 (198) T PRK08349 79 ---IGKEKWTCLFCKYTMYRVAERYAHEIGAKAIV-TGDSLGQVASQTLDNLMVISTATDLPILRPLIGLDKEEIVRIAK 154 (198) T ss_pred ---CCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH T ss_conf ---07765130999999999999999985998898-45216788899998899998750676647766799899999999 Q ss_pred C-CCEEEEECCCEEEEEEECCCCCEEEEE Q ss_conf 7-956997059808999751577625730 Q gi|254781122|r 147 P-GKHSFDLPENSVFSIVCLEDIENITIT 174 (222) Q Consensus 147 ~-g~~~~~~~~g~~~Sl~p~~~~~~vt~~ 174 (222) . |++.+...+...|+++|-.+++.-+.+ T Consensus 155 ~IGTye~S~~~~~cC~~~pk~P~t~~~~~ 183 (198) T PRK08349 155 EIGTFEISIEPEPPCPFVPKFPVVRAGLG 183 (198) T ss_pred HHCCHHHHCCCCCCCEEECCCCCCCCCHH T ss_conf 81955343289977441089882688999 No 47 >TIGR00338 serB phosphoserine phosphatase SerB; InterPro: IPR004469 Phosphoserine phosphatase (SerB), (3.1.3.3 from EC), also known as O-phosphoserine phosphohydrolase, is involved in both serine and glycine biosynthesis. It catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate, which is the last step in the biosynthesis of serine from carbohydrates. The reaction proceeds via the formation of a phosphoryl-enzyme intermediate. It acts as a homodimer, and requires magnesium as a cofactor.; GO: 0004647 phosphoserine phosphatase activity, 0006564 L-serine biosynthetic process. Probab=28.41 E-value=13 Score=17.62 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=34.6 Q ss_pred HHCCCCCEEEEECCCCC--CHHHHHHHCC-CC------EEEECCCCCCCHHHHHHHHH Q ss_conf 98899734999721129--9889974031-88------59920567779489999999 Q gi|254781122|r 46 SQLKVVPELWIGDFDSV--DRTLLQQWSS-IK------RIFYPNDKDMADGEIAVHKA 94 (222) Q Consensus 46 ~~~~i~Pd~iiGDfDSi--~~~~~~~~~~-~~------~i~~~~dkD~TD~ekAL~~~ 94 (222) .++...+.++|=||||. ..|..+...+ .+ .+-....+-.+||+.||+.= T Consensus 8 ~~~~~~~~L~VFD~DSTli~~E~IDeiAk~AGVee~V~~iTerAM~Ge~dF~~SLr~R 65 (223) T TIGR00338 8 SKLLRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKESLRER 65 (223) T ss_pred HHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 2445205726860227877542588898751845789999999718998888999999 No 48 >cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers. Probab=27.23 E-value=45 Score=14.17 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=62.1 Q ss_pred EEEEEEECCC-CCCCHHH-----HHHH-CCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHC-CCC----EEE Q ss_conf 0699998779-9981688-----9851-34949999188899998899734999721129988997403-188----599 Q gi|254781122|r 10 IDFAILLNGD-IRVTNRL-----LCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWS-SIK----RIF 77 (222) Q Consensus 10 ~~~~Ii~nG~-~~~~~~~-----~~~~-~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~-~~~----~i~ 77 (222) .|+.|+..|. .|.-+.. .... ....++++=.|..=|++..+.+ ++.+..+.+. .-+ .-+ T Consensus 1 krIaIltsGG~~pGmNa~ir~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~---------L~~~~v~~i~~~GGt~LgssR 71 (338) T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEGDIKE---------LDWESVSDIINRGGTIIGSAR 71 (338) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEE---------CCHHHHHHHHHCCCEECCCCC T ss_conf 95999868888668889999999999977999999825777770798162---------999999879856981316767 Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 2056777948999999997599759999537878124788999999988 Q gi|254781122|r 78 YPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSL 126 (222) Q Consensus 78 ~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~ 126 (222) +++.++..+.+++++.+.+++.+-.+++|| .| ++.....|.++ T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG-dg-----S~~~a~~L~~~ 114 (338) T cd00363 72 CKEFRTEEGRAKAAENLKKHGIDALVVIGG-DG-----SYTGADLLTEE 114 (338) T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECC-CH-----HHHHHHHHHHH T ss_conf 876678677899999999829998999789-26-----99999999998 No 49 >PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional Probab=26.43 E-value=46 Score=14.08 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=4.1 Q ss_pred CCHHHHHHHC Q ss_conf 8168898513 Q gi|254781122|r 22 VTNRLLCAIE 31 (222) Q Consensus 22 ~~~~~~~~~~ 31 (222) .++++.+.++ T Consensus 48 Gh~fi~~Ai~ 57 (481) T PRK00139 48 GRDFIAQAIA 57 (481) T ss_pred HHHHHHHHHH T ss_conf 8999999998 No 50 >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Probab=25.79 E-value=48 Score=14.01 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=42.8 Q ss_pred CCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEEH---------------------HHHHHHHCCCCCEEEEECC Q ss_conf 9754528740699998779998168898513494999918---------------------8899998899734999721 Q gi|254781122|r 1 MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADG---------------------GICHASQLKVVPELWIGDF 59 (222) Q Consensus 1 ~~~~~~~~~~~~~Ii~nG~~~~~~~~~~~~~~~~iIavDg---------------------Ga~~l~~~~i~Pd~iiGDf 59 (222) |+.|-+....++.|+.+|.+-.--.....--.-.++++|. .+...+-....+|+|.=.| T Consensus 4 ~~~p~~~~~kkIgIlGgGQLg~Mla~aA~~LG~~vivld~~~d~PA~~vAd~~~~~~~~D~~al~~~a~~~~~DvvT~E~ 83 (395) T PRK09288 4 LGTPLSPSATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDLIVPEI 83 (395) T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECC T ss_conf 56898999888999898899999999999879989998489959446728657977878999999999983899899785 Q ss_pred CCCCHHHHHHHCCCCEEEEC Q ss_conf 12998899740318859920 Q gi|254781122|r 60 DSVDRTLLQQWSSIKRIFYP 79 (222) Q Consensus 60 DSi~~~~~~~~~~~~~i~~~ 79 (222) .-+..+.++..++.+.-++| T Consensus 84 E~V~~~~L~~le~~G~~v~P 103 (395) T PRK09288 84 EAIATDALVELEAEGFNVVP 103 (395) T ss_pred CCCCHHHHHHHHHCCCEECC T ss_conf 44788999999868933679 No 51 >pfam01075 Glyco_transf_9 Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core. Probab=25.62 E-value=48 Score=13.99 Aligned_cols=30 Identities=27% Similarity=0.184 Sum_probs=12.1 Q ss_pred EEEEEEECCCCCCCHHHHHHHCCCCEEEEEH Q ss_conf 0699998779998168898513494999918 Q gi|254781122|r 10 IDFAILLNGDIRVTNRLLCAIESCKVIAADG 40 (222) Q Consensus 10 ~~~~Ii~nG~~~~~~~~~~~~~~~~iIavDg 40 (222) ..++|.+-+...+ .++.........|+-+. T Consensus 13 yD~vidl~~s~rs-~~~~~~~~a~~riG~~~ 42 (249) T pfam01075 13 YDAVIDLQGLFKS-ALLPRFLGAPVRIGYDG 42 (249) T ss_pred CCEEEECCCCHHH-HHHHHHHCCCEEEEECC T ss_conf 8999989898499-99999849983996378 No 52 >PRK10376 putative oxidoreductase; Provisional Probab=25.47 E-value=48 Score=13.97 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=10.2 Q ss_pred HHHHHHHHHCCCCEEEEEECCCC Q ss_conf 99999999759975999953787 Q gi|254781122|r 88 EIAVHKALQSGARNIILVGSISG 110 (222) Q Consensus 88 ekAL~~~~~~~~~~i~i~gg~~G 110 (222) -.||..+++.| .+--+| .+. T Consensus 148 ~~al~~l~~~G--kir~iG-vSN 167 (291) T PRK10376 148 LTVLAELQRQG--LVRHIG-LSN 167 (291) T ss_pred HHHHHHHHHCC--CEEEEE-ECC T ss_conf 99999999889--877998-458 No 53 >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Probab=25.07 E-value=49 Score=13.92 Aligned_cols=75 Identities=15% Similarity=0.051 Sum_probs=49.4 Q ss_pred EHHHHHHHHCC---CCCEEEEECCCCCCHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHHHHCC---CCEEEEEECCCCC Q ss_conf 18889999889---9734999721129988997-403188599205677794899999999759---9759999537878 Q gi|254781122|r 39 DGGICHASQLK---VVPELWIGDFDSVDRTLLQ-QWSSIKRIFYPNDKDMADGEIAVHKALQSG---ARNIILVGSISGQ 111 (222) Q Consensus 39 DgGa~~l~~~~---i~Pd~iiGDfDSi~~~~~~-~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~---~~~i~i~gg~~G~ 111 (222) ..-+.++-+.| +.||+.-...++...+... ........+.++.+-..|.+.++.|+..+. ...+.++|=..|| T Consensus 44 ~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG 123 (236) T COG0412 44 RDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGG 123 (236) T ss_pred HHHHHHHHHCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCH T ss_conf 99999999589869731544468888765641898751232047878866459999999986668888648999988037 Q ss_pred CH Q ss_conf 12 Q gi|254781122|r 112 RF 113 (222) Q Consensus 112 R~ 113 (222) ++ T Consensus 124 ~~ 125 (236) T COG0412 124 GL 125 (236) T ss_pred HH T ss_conf 99 No 54 >TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820 This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity. Probab=25.00 E-value=32 Score=15.12 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.9 Q ss_pred EEEEEHHHHHHHHCCCCCEEEEECCC Q ss_conf 99991888999988997349997211 Q gi|254781122|r 35 VIAADGGICHASQLKVVPELWIGDFD 60 (222) Q Consensus 35 iIavDgGa~~l~~~~i~Pd~iiGDfD 60 (222) ..|-|.....+.+++-+||+|||-.= T Consensus 375 ~FA~D~~~e~~~el~g~PDLIIGNYS 400 (790) T TIGR02470 375 TFAEDAEKEILAELQGKPDLIIGNYS 400 (790) T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 66899999999984689970673256 No 55 >TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process. Probab=24.38 E-value=51 Score=13.84 Aligned_cols=15 Identities=7% Similarity=-0.334 Sum_probs=8.0 Q ss_pred CHHHHHHHHHHHCCC Q ss_conf 948999999997599 Q gi|254781122|r 85 ADGEIAVHKALQSGA 99 (222) Q Consensus 85 TD~ekAL~~~~~~~~ 99 (222) +=.=+|.+.+.+... T Consensus 68 NL~yrAa~Ll~~~~~ 82 (322) T TIGR00154 68 NLIYRAAKLLKNKAN 82 (322) T ss_pred HHHHHHHHHHHHHHH T ss_conf 069999999998510 No 56 >COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism] Probab=24.12 E-value=51 Score=13.81 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=20.4 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH Q ss_conf 89999999975997599995378781247889 Q gi|254781122|r 87 GEIAVHKALQSGARNIILVGSISGQRFDYALQ 118 (222) Q Consensus 87 ~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~la 118 (222) ++|||+. ++++.+-..+.. -|+|+||.-. T Consensus 286 t~kAi~~-L~kn~~GFFLMV--EGg~ID~a~H 314 (482) T COG1785 286 TEKAIDL-LSKNKKGFFLMV--EGGRIDWAGH 314 (482) T ss_pred HHHHHHH-HCCCCCCEEEEE--ECCCCCHHHC T ss_conf 9999998-614998559997--4452665325 No 57 >PRK06487 glycerate dehydrogenase; Provisional Probab=23.82 E-value=52 Score=13.78 Aligned_cols=151 Identities=11% Similarity=0.038 Sum_probs=75.2 Q ss_pred EEEEEEECCCCCCCHHHHHHH-C-CCCEEE-EEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEEE-ECCCCCCC Q ss_conf 069999877999816889851-3-494999-9188899998899734999721129988997403188599-20567779 Q gi|254781122|r 10 IDFAILLNGDIRVTNRLLCAI-E-SCKVIA-ADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIF-YPNDKDMA 85 (222) Q Consensus 10 ~~~~Ii~nG~~~~~~~~~~~~-~-~~~iIa-vDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~-~~~dkD~T 85 (222) |+++++=.+.....+.....+ + ...+.. -..-.+-+.+.=--.|.+|....-++.+.++..++.+.+. .-.--|.- T Consensus 1 mk~v~ld~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~el~~~~~dadi~i~~~~~i~~~~l~~ap~LK~I~~~g~G~d~I 80 (317) T PRK06487 1 MRAVFLDHGSLDLGDLDLSPLEQAFDELQLHAATRPEQVAERLQGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV 80 (317) T ss_pred CEEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCEEEEECCCCCCCC T ss_conf 95999574448877779599985299579956999899999848991999689712899993499981998888363220 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC---CC-EEEEEECCCEEEEEECCCEEEEECCCEEEE Q ss_conf 48999999997599759999537878124788999999988626---98-199994891899996795699705980899 Q gi|254781122|r 86 DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKK---NI-NVTLTSGIEEVFILVPGKHSFDLPENSVFS 161 (222) Q Consensus 86 D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~---~~-~i~l~~~~~~i~~l~~g~~~~~~~~g~~~S 161 (222) |.+- |.+++..=...-|..+..=-+|+++.+..+.+-... .+ .-.+. . ...+.. ..+....-.|++++ T Consensus 81 D~~a----a~~~gI~V~n~pg~~~~~VAE~~l~liL~l~R~~~~~~~~~~~g~W~-~-~~~~~~--~~~~~~eL~gktvG 152 (317) T PRK06487 81 DLAA----ARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQ-Q-SSQFCL--LDFPIVELEGKTLG 152 (317) T ss_pred CHHH----HHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CCCCCC--CCCCCCEECCCEEE T ss_conf 6999----99789989978986837999999999999985458999999828433-3-655553--47765430597899 Q ss_pred EEECCCC Q ss_conf 9751577 Q gi|254781122|r 162 IVCLEDI 168 (222) Q Consensus 162 l~p~~~~ 168 (222) ++.++.. T Consensus 153 IiG~G~I 159 (317) T PRK06487 153 LLGHGEL 159 (317) T ss_pred EECCCHH T ss_conf 9786768 No 58 >PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed Probab=23.62 E-value=52 Score=13.75 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=17.2 Q ss_pred CEEEEEEECCCCCCCHHHHHHHC Q ss_conf 40699998779998168898513 Q gi|254781122|r 9 FIDFAILLNGDIRVTNRLLCAIE 31 (222) Q Consensus 9 ~~~~~Ii~nG~~~~~~~~~~~~~ 31 (222) |++++|++.|.-..-..+....+ T Consensus 1 Mkkiavl~SG~GSNl~aii~a~~ 23 (200) T PRK05647 1 MKRIVVLASGNGSNLQAIIDACA 23 (200) T ss_pred CCEEEEEECCCCHHHHHHHHHHH T ss_conf 97899999158044999999987 No 59 >PRK13354 tyrosyl-tRNA synthetase; Provisional Probab=21.80 E-value=57 Score=13.52 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=13.9 Q ss_pred HHHHHHHCCCCCEEEEECCC Q ss_conf 88999988997349997211 Q gi|254781122|r 41 GICHASQLKVVPELWIGDFD 60 (222) Q Consensus 41 Ga~~l~~~~i~Pd~iiGDfD 60 (222) .+.++.++|..|-++|||+- T Consensus 61 ~L~~fq~~Gh~~i~liGg~T 80 (405) T PRK13354 61 KLKQFQDAGHRAVILIGDFT 80 (405) T ss_pred HHHHHHHCCCCEEEEECCCC T ss_conf 99999986994799967865 No 60 >PRK11133 serB phosphoserine phosphatase; Provisional Probab=21.71 E-value=48 Score=13.99 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=30.2 Q ss_pred CCCEEEEECCCC--CCHHHHHHHC---CCC----EEEECCCCCCCHHHHHHHHH Q ss_conf 973499972112--9988997403---188----59920567779489999999 Q gi|254781122|r 50 VVPELWIGDFDS--VDRTLLQQWS---SIK----RIFYPNDKDMADGEIAVHKA 94 (222) Q Consensus 50 i~Pd~iiGDfDS--i~~~~~~~~~---~~~----~i~~~~dkD~TD~ekAL~~~ 94 (222) ..|-+++=|||| |..|...... .++ .|-....+-.-||+-+|+.= T Consensus 108 ~~pgLvVfDMDSTlI~~E~IDELA~~aGv~~eVa~ITerAM~GELDF~eSL~~R 161 (322) T PRK11133 108 RTPGLLVMDMDSTAIQIECIDEIAKLAGVGEEVAEVTERAMRGELDFEASLRQR 161 (322) T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 679859995754032254599999980987899999999978987879999999 No 61 >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Probab=21.37 E-value=58 Score=13.47 Aligned_cols=13 Identities=15% Similarity=-0.092 Sum_probs=4.7 Q ss_pred EEEHHHHHHHHCC Q ss_conf 9918889999889 Q gi|254781122|r 37 AADGGICHASQLK 49 (222) Q Consensus 37 avDgGa~~l~~~~ 49 (222) -+......+.+.. T Consensus 35 l~~~~~~~l~~~~ 47 (279) T cd03789 35 LAPPWFAPLLELM 47 (279) T ss_pred EECHHHHHHHHHC T ss_conf 9893689999639 No 62 >KOG4530 consensus Probab=21.19 E-value=59 Score=13.44 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=31.7 Q ss_pred CCCEEEECCCCCCCHHHH----HHHHHHHC---CCCEEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 188599205677794899----99999975---9975999953787812478899999998 Q gi|254781122|r 72 SIKRIFYPNDKDMADGEI----AVHKALQS---GARNIILVGSISGQRFDYALQHITLATS 125 (222) Q Consensus 72 ~~~~i~~~~dkD~TD~ek----AL~~~~~~---~~~~i~i~gg~~G~R~DH~lani~~L~~ 125 (222) ....++|..-|+.--.-. ||+|+... ++.-|+-+||.+|||---.|-.+....+ T Consensus 86 ~aD~ivFvtPqYN~gypA~LKNAlD~lyheW~gKPalivSyGGhGGg~c~~qL~~v~~fLk 146 (199) T KOG4530 86 EADSIVFVTPQYNFGYPAPLKNALDWLYHEWAGKPALIVSYGGHGGGRCQYQLRQVGVFLK 146 (199) T ss_pred HCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHE T ss_conf 1463799646436777667777888763010599659997368787327999999875510 No 63 >PRK09912 aldo-keto reductase; Provisional Probab=21.10 E-value=59 Score=13.43 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=18.4 Q ss_pred EECCCCCC--CHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 92056777--948999999997599759999537878124788 Q gi|254781122|r 77 FYPNDKDM--ADGEIAVHKALQSGARNIILVGSISGQRFDYAL 117 (222) Q Consensus 77 ~~~~dkD~--TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~l 117 (222) .|.+|.+. -+.-.||..+++.| .+--+| ++.-..++.- T Consensus 137 lH~~d~~~p~ee~~~al~~l~~~G--kir~iG-vSn~~~~~~~ 176 (346) T PRK09912 137 SHRVDENTPMEETASALAHAVQSG--KALYVG-ISSYSPERTQ 176 (346) T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC--CEEEEE-ECCCCHHHHH T ss_conf 035898888799999999999849--500784-2367899999 No 64 >pfam00326 Peptidase_S9 Prolyl oligopeptidase family. Probab=21.02 E-value=59 Score=13.42 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=25.9 Q ss_pred CCCCCCHHHHHHHHHHHCCC---CEEEEEECCCCCC Q ss_conf 56777948999999997599---7599995378781 Q gi|254781122|r 80 NDKDMADGEIAVHKALQSGA---RNIILVGSISGQR 112 (222) Q Consensus 80 ~dkD~TD~ekAL~~~~~~~~---~~i~i~gg~~G~R 112 (222) ..+|..|...|++|+.+++. +.|.++|.--||- T Consensus 41 G~~~~~D~~~~v~~l~~~~~iD~~RI~v~G~S~GG~ 76 (212) T pfam00326 41 GQNEFDDFIAAAEYLIAQGYVDPDRLAIWGGSYGGY 76 (212) T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHEEEEEECCCHH T ss_conf 868799999999999986998855748976762209 No 65 >TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process. Probab=20.65 E-value=60 Score=13.37 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=17.6 Q ss_pred HHHHHCCCCCEEEEECCCC-CCHHHHHHH Q ss_conf 9999889973499972112-998899740 Q gi|254781122|r 43 CHASQLKVVPELWIGDFDS-VDRTLLQQW 70 (222) Q Consensus 43 ~~l~~~~i~Pd~iiGDfDS-i~~~~~~~~ 70 (222) .-|++.||.||++|+=-|- ++++.++.. T Consensus 205 KeLRs~Gi~PD~i~cRs~~~l~~~~k~Ki 233 (571) T TIGR00337 205 KELRSLGIQPDIIICRSSEPLDKSLKKKI 233 (571) T ss_pred HHHHHCCCCCCEEEECCCCCCCHHHHHHH T ss_conf 99986098886899818876897776452 No 66 >PRK05625 hypothetical protein; Validated Probab=20.03 E-value=62 Score=13.29 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=36.5 Q ss_pred CCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 7349997211299889974031885992056777948999999997599759999537878124788 Q gi|254781122|r 51 VPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYAL 117 (222) Q Consensus 51 ~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~l 117 (222) .|.+++-. .+..++..+..++....+....++..|++.+|+.+.+++...+.+-|| +++=+.| T Consensus 119 ~~~li~~~-~~~~~~~~~~l~~~~i~v~~~~~~~ldl~~il~~L~~~gi~~lLvEGG---~~l~~sf 181 (239) T PRK05625 119 VPPIVLTS-AAAPADRRRELAAKAEVVVVGGDDRVDLAAALDALAERGLRRILCEGG---PTLLGSL 181 (239) T ss_pred CCEEEEEC-CCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECHH---HHHHHHH T ss_conf 99899988-988989999998589699957999879999999999769998998627---9999999 Done!