HHsearch alignment of GI: 254781122 and MMDB domain: 3l8m_A_
>3l8m_A (A:) Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=100.00 E-value=0 Score=356.16 Aligned_cols=206 Identities=24% Similarity=0.320 Sum_probs=184.8
Q ss_pred EEEEEEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC-CCEEEECCCCCCCHHH
Q ss_conf 069999877999816889851349499991888999988997349997211299889974031-8859920567779489
Q gi|254781122|r 10 IDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS-IKRIFYPNDKDMADGE 88 (222)
Q Consensus 10 ~~~~Ii~nG~~~~~~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~-~~~i~~~~dkD~TD~e 88 (222)
.+++|++||+.+.... ....+.+.+||||||+++|+++|++||++||||||++++++++++. ...++++++||+||+|
T Consensus 1 ~k~~iv~~g~~~~~~~-~~~~~~~~ii~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~kd~TD~e 79 (212)
T 3l8m_A 1 XKANLLCGNRNLPKHI-LVEHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQIEINPYNSEKDDTDLA 79 (212)
T ss_dssp CEEEEECCSSSCCTTH-HHHTTTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHTBCCCCC---CBCHHH
T ss_pred CEEEEEECCCCCCHHH-HHHCCCCEEEEECHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEECCCCCHHHHH
T ss_conf 9899996899899899-974349889998758999998799859897468899868999862673299827565656999
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCEEEEEECCCEE-EEECCCEEEEEEEC
Q ss_conf 999999975997599995378781247889999999886--269819999489189999679569-97059808999751
Q gi|254781122|r 89 IAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLK--KKNINVTLTSGIEEVFILVPGKHS-FDLPENSVFSIVCL 165 (222)
Q Consensus 89 kAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~--~~~~~i~l~~~~~~i~~l~~g~~~-~~~~~g~~~Sl~p~ 165 (222)
|||+++.++++++++++|| +|||+||+++|+++|+++. ..++++.++++++.++++++|.+. +..+.++++|++|+
T Consensus 80 ~Al~~~~~~~~~~i~i~G~-~GgR~DH~l~ni~~l~~~~~~~~~~~i~l~d~~~~~~~l~~g~~~~~~~~~~~~~Slipl 158 (212)
T 3l8m_A 80 LGIDQAVKRGYRNIDVYGA-TGGRLDHFXGALQILEKPEYAKXNINIKLIDDTNEIQFIQKGQFNVTYSEQFPYISFIPV 158 (212)
T ss_dssp HHHHHHHHTTCCEEEEESC-SSSCHHHHHHHHHHHTCHHHHTTTCEEEEECSSEEEEEECSEEECC-----CCEEEEEEC
T ss_pred HHHHHHHHCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCEEEECCCCCCEEEEECC
T ss_conf 9999998679977999805-779578899999999876654128877998299799999289458965888753666035
Q ss_pred CCCCEEEEECEEEECCCCEECCCCCEEEEEEECC-CEEEEEECCEEEEEECCCC
Q ss_conf 5776257304166537878527875388499849-5799995790999974410
Q gi|254781122|r 166 EDIENITITGAKYTLSHHSLSLGSSRAVSNVVTK-NLTIMLDQGLAILISRPYD 218 (222)
Q Consensus 166 ~~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~-~~~I~~~~G~llvi~~~kd 218 (222)
+++++||++||||||++++|.+++++|+||++.+ .++|++++|.+++| ++||
T Consensus 159 ~~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~~~~I~~~~g~ll~i-~~kd 211 (212)
T 3l8m_A 159 IYPTVISLKGFKYNLQNETLKLGSTLTISNELSQSCGNIEIIEGSVLXI-RSKD 211 (212)
T ss_dssp C-CEEEESSSSCCSSEEC-------CCTTBCC---CCCEEEEESCEEEE-EECC
T ss_pred CCCCEEEECCCEEECCCCEECCCCCCEEEEEEECCEEEEEECCCEEEEE-EECC
T ss_conf 5653698078886789962148997466037979828999767989999-9757