HHsearch results for GI: 254781122 and protein with PDBid: 2omk_A
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, PSI-2, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=0 Score=353.08 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=178.8
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHCC-CCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 87406999987799981688985134-94999918889999889973499972112998899740318859920567779
Q gi|254781122|r 7 NKFIDFAILLNGDIRVTNRLLCAIES-CKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMA 85 (222)
Q Consensus 7 ~~~~~~~Ii~nG~~~~~~~~~~~~~~-~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~T 85 (222)
..+++++|++||++|.++++.+.+++ +++||||||+++|+++|++||++||||||++++.+++++. .+++++|||+|
T Consensus 29 ~~~p~avIianG~~p~~~~~~~~l~~~~~iIa~DgGa~~l~~~gi~Pd~iiGDfDSv~~~~~~~~~~--~~~~~~eqD~T 106 (231)
T 2omk_A 29 HYIPQAIILANGEYPAHELPLRLLAEAQFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS--IILQISDQETN 106 (231)
T ss_dssp CCCCSEEEECSSSCCCSHHHHHHHHHCSCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG--GEECCCSSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCC--EEECCCCCCCC
T ss_conf 7688899997998997288999986499899997999999986997588980444798678853670--22337787878
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEEEEEC
Q ss_conf 48999999997599759999537878124788999999988626981999948918999967956997059808999751
Q gi|254781122|r 86 DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCL 165 (222)
Q Consensus 86 D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~g~~~Sl~p~ 165 (222)
|+||||++|.++++++++++|| +|||+||+|+|+++|++|.+.+++++++++++.++++ +|...+..++|+++|++|+
T Consensus 107 DlekAl~~~~~~g~~~I~ilGa-~GgR~DH~Lani~lL~~~~~~~~~i~~~~d~~~i~~~-~~~~~~~~~~g~~iSl~pl 184 (231)
T 2omk_A 107 DQTKAVHYLQSKGIRKIAIVGA-TGKREDHTLGNISLLVEYMRSGMEVRTVTDYGTFIPV-SDTQSFASYPGQQVSIINF 184 (231)
T ss_dssp HHHHHHHHHHHTTCCEEEEESC-SSSCHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEE-ESSEEEECCTTCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEE-CCCCCCCCCCCCEEEEEEC
T ss_conf 5999999998669977999657-7895778999999999998759879994476599997-8940232589978755504
Q ss_pred CCCCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEEEEEE
Q ss_conf 57762573041665378785278753884998495-79999579099997
Q gi|254781122|r 166 EDIENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILIS 214 (222)
Q Consensus 166 ~~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~llvi~ 214 (222)
+ +++|+++||||||+++++.+ .|+||++.++ ++|++++|.+++|.
T Consensus 185 ~-~~~vt~~Glky~L~~~~l~~---~g~SNe~~~~~v~I~~~~g~ll~i~ 230 (231)
T 2omk_A 185 G-AKGLKAEGLFYPLSDFTNWW---QGTLNEAIADEFTIHCTGEYLVFLA 230 (231)
T ss_dssp E-EEEEEEESBSSCCCCCSSGG---GGTTEEBCSSEEEEEEEEEEEEEEE
T ss_pred C-CCEEEEECCEEECCCCCCCC---CCEEEEEECCEEEEEECCCEEEEEE
T ss_conf 4-77499718787888986788---9885899898599998599999996