HHsearch results for GI: 254781122 and protein with PDBid: 3lm8_A

>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=100.00  E-value=0  Score=379.20  Aligned_cols=211  Identities=26%  Similarity=0.365  Sum_probs=189.5

Q ss_pred             CEEEEEEECCCCCCCHHHHHHHC-CCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC--CCEEEECCCCCCC
Q ss_conf             40699998779998168898513-49499991888999988997349997211299889974031--8859920567779
Q gi|254781122|r    9 FIDFAILLNGDIRVTNRLLCAIE-SCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS--IKRIFYPNDKDMA   85 (222)
Q Consensus         9 ~~~~~Ii~nG~~~~~~~~~~~~~-~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~--~~~i~~~~dkD~T   85 (222)
                      |..++|++||+.+..+.+...++ .+++||||||+++|+++|+.||++||||||++++.+++++.  ..++++|+|||+|
T Consensus         1 Mk~i~IvagG~~~~~~~l~~~~~~~~~vIaaDgG~~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~i~~~~~dkD~T   80 (222)
T 3lm8_A            1 MKTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQT   80 (222)
T ss_dssp             -CEEEEECSSCGGGSCCSGGGCCTTEEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSC
T ss_pred             CCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCEEECCHHHCCC
T ss_conf             96999998999766776886314488899984189999977998698972688997578789985498359958453658


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEE-CCCEEEEEEE
Q ss_conf             489999999975997599995378781247889999999886269819999489189999679569970-5980899975
Q gi|254781122|r   86 DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDL-PENSVFSIVC  164 (222)
Q Consensus        86 D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~-~~g~~~Sl~p  164 (222)
                      |+||||++|.++++++++++|| +|||+||+|+|+++|+++.+.+++++++++++.++++.+|++.+.. +.++++||+|
T Consensus        81 D~ekAl~~~~~~~~~~i~i~Ga-~GgR~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~~~~~iSl~p  159 (222)
T 3lm8_A           81 DLDLALDWALEKQPDIIQIFGI-TGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQMFPPGEYDIEKDENKRYISFIP  159 (222)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESC-CCSCHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEECSEEEEEECCSSCCEEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCCCEEEEEE
T ss_conf             8999999999749998999902-479656889999999988756975999969949999928966998058985799998


Q ss_pred             CC-CCCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEEEEEECCCCCCC
Q ss_conf             15-7762573041665378785278753884998495-799995790999974410024
Q gi|254781122|r  165 LE-DIENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILISRPYDLQR  221 (222)
Q Consensus       165 ~~-~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~llvi~~~kd~~~  221 (222)
                      ++ ++++||++||||||++++|++++++|+||++.++ ++|++++|.+++| +|||++.
T Consensus       160 l~~~~~~vt~~Glky~L~~~~l~~~~~~g~SNe~~~~~~~I~~~~G~llvi-~s~D~~~  217 (222)
T 3lm8_A          160 FSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFVKGILIMI-RSTDLEH  217 (222)
T ss_dssp             CSSCEEEEEEESBSSCEEEEEECTTCCTTSSBCBSSSEEEEEESBSCEEEE-EECCC--
T ss_pred             CCCCCCEEEECCCEEECCCCEEECCCCEEEEEEEECCEEEEEECCCEEEEE-EEECCCC
T ss_conf             468722599359897779927627995078379989849999878989999-9264764