HHsearch results for GI: 254781122 and protein with PDBid: 3lm8_A
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=0 Score=379.20 Aligned_cols=211 Identities=26% Similarity=0.365 Sum_probs=189.5
Q ss_pred CEEEEEEECCCCCCCHHHHHHHC-CCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC--CCEEEECCCCCCC
Q ss_conf 40699998779998168898513-49499991888999988997349997211299889974031--8859920567779
Q gi|254781122|r 9 FIDFAILLNGDIRVTNRLLCAIE-SCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS--IKRIFYPNDKDMA 85 (222)
Q Consensus 9 ~~~~~Ii~nG~~~~~~~~~~~~~-~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~--~~~i~~~~dkD~T 85 (222)
|..++|++||+.+..+.+...++ .+++||||||+++|+++|+.||++||||||++++.+++++. ..++++|+|||+|
T Consensus 1 Mk~i~IvagG~~~~~~~l~~~~~~~~~vIaaDgG~~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~i~~~~~dkD~T 80 (222)
T 3lm8_A 1 MKTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQT 80 (222)
T ss_dssp -CEEEEECSSCGGGSCCSGGGCCTTEEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSC
T ss_pred CCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCEEECCHHHCCC
T ss_conf 96999998999766776886314488899984189999977998698972688997578789985498359958453658
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEE-CCCEEEEEEE
Q ss_conf 489999999975997599995378781247889999999886269819999489189999679569970-5980899975
Q gi|254781122|r 86 DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDL-PENSVFSIVC 164 (222)
Q Consensus 86 D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~-~~g~~~Sl~p 164 (222)
|+||||++|.++++++++++|| +|||+||+|+|+++|+++.+.+++++++++++.++++.+|++.+.. +.++++||+|
T Consensus 81 D~ekAl~~~~~~~~~~i~i~Ga-~GgR~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~~~~~iSl~p 159 (222)
T 3lm8_A 81 DLDLALDWALEKQPDIIQIFGI-TGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQMFPPGEYDIEKDENKRYISFIP 159 (222)
T ss_dssp HHHHHHHHHHHHCCSEEEEESC-CCSCHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEECSEEEEEECCSSCCEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCCCEEEEEE
T ss_conf 8999999999749998999902-479656889999999988756975999969949999928966998058985799998
Q ss_pred CC-CCCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEEEEEECCCCCCC
Q ss_conf 15-7762573041665378785278753884998495-799995790999974410024
Q gi|254781122|r 165 LE-DIENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILISRPYDLQR 221 (222)
Q Consensus 165 ~~-~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~llvi~~~kd~~~ 221 (222)
++ ++++||++||||||++++|++++++|+||++.++ ++|++++|.+++| +|||++.
T Consensus 160 l~~~~~~vt~~Glky~L~~~~l~~~~~~g~SNe~~~~~~~I~~~~G~llvi-~s~D~~~ 217 (222)
T 3lm8_A 160 FSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFVKGILIMI-RSTDLEH 217 (222)
T ss_dssp CSSCEEEEEEESBSSCEEEEEECTTCCTTSSBCBSSSEEEEEESBSCEEEE-EECCC--
T ss_pred CCCCCCEEEECCCEEECCCCEEECCCCEEEEEEEECCEEEEEECCCEEEEE-EEECCCC
T ss_conf 468722599359897779927627995078379989849999878989999-9264764