RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781122|ref|YP_003065535.1| putative thiamine
pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
         (222 letters)



>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2,
           protein structure initiative; 2.10A {Geobacillus
           thermodenitrificans ng80-2} (A:)
          Length = 223

 Score =  133 bits (335), Expect = 2e-32
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 9/206 (4%)

Query: 14  ILLNGDIRVTNRLLCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS 72
           I+  G   +   L     E    +  D G     +    P    GDFDS+    + +   
Sbjct: 5   IVGGGPRELLPDLRFYDGEDVXWVGVDRGTXTLLEAGFRPVRAFGDFDSLPAEDVVKLQQ 64

Query: 73  --IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKN 130
                  +P +KD  D EIA+  A++  AR I L G+  G R D+   ++ L   LK  +
Sbjct: 65  AFPDLDVWPAEKDKTDXEIALDWAVEQTARXIRLFGATGG-RLDHLFGNVELL--LKYAD 121

Query: 131 INVTLTSGIEEVFILVPGKHSF-DLPENSVFSIV-CLEDIENITITGAKYTLSHHSLSLG 188
             + +      + + +PG ++          S +   E +   T+TG KY L++  +S G
Sbjct: 122 RPIEIVDRQNVLTVHLPGTYTVXYDARYCYVSYIPVSETVAEFTLTGFKYPLTNXHISRG 181

Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213
           S+  +SN + ++  T    +G+   I
Sbjct: 182 STLXISNELIQSSGTFSFSEGILXXI 207


>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate
           biosynthetic process, ATP binding, structural genomics,
           PSI-2; 2.40A {Staphylococcus saprophyticus} (A:)
          Length = 212

 Score =  128 bits (324), Expect = 4e-31
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 7/205 (3%)

Query: 14  ILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS- 72
           +L      +   +L   +    I  D G     +  + P+  +GDFDS+  +        
Sbjct: 5   LLCGNRN-LPKHILVEHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQ 63

Query: 73  IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDY--ALQHITLATSLKKKN 130
           I+   Y ++KD  D  + + +A++ G RNI + G+  G R D+      I       K N
Sbjct: 64  IEINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGAT-GGRLDHFXGALQILEKPEYAKXN 122

Query: 131 INVTLTSGIEEVFILVPGKHS-FDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLGS 189
           IN+ L     E+  +  G+ +     +    S + +     I++ G KY L + +L LGS
Sbjct: 123 INIKLIDDTNEIQFIQKGQFNVTYSEQFPYISFIPVIYPTVISLKGFKYNLQNETLKLGS 182

Query: 190 SRAVSNVVTKN-LTIMLDQGLAILI 213
           +  +SN ++++   I + +G  + I
Sbjct: 183 TLTISNELSQSCGNIEIIEGSVLXI 207


>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium, NESG, SMR83; HET: TPP; 3.00A
           {Streptococcus mutans} (A:)
          Length = 218

 Score =  127 bits (321), Expect = 1e-30
 Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 14  ILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSI 73
           +   GD+    R     +    +  D G     + ++  +L IGDFDSV     +Q  + 
Sbjct: 6   LFSGGDLTYFTR-----DFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAK 60

Query: 74  --KRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKN- 130
             K +  P +K+  D E+A+        R  I+V    G R D+ L +I L +       
Sbjct: 61  AKKLVXAPAEKNDTDTELALKTIFDCFGRVEIIVFGAFGGRIDHXLSNIFLPSDPDLAPF 120

Query: 131 -INVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLGS 189
                L      V     G+H  +   + V+      +  +++I  AKY L+  +     
Sbjct: 121 XRCFKLRDEQNLVEFFPAGQHQIEQATDXVYISFXAANGAHLSIQDAKYELTEENYF-QK 179

Query: 190 SRAVSNVVTKN-LTIMLDQGLAILISRPYDLQRF 222
               SN      +   +  G  ++I +  D    
Sbjct: 180 KIYSSNEFKDKPICFSVASGYVVVI-QTKDRTLE 212


>2omk_A Hypothetical protein; succinimide, thiamin
           pyrophosphokinase, structural genomics, PSI-2, protein
           structure initiative; 1.80A {Bacteroides
           thetaiotaomicron vpi-5482} (A:)
          Length = 231

 Score =  126 bits (318), Expect = 2e-30
 Identities = 44/216 (20%), Positives = 75/216 (34%), Gaps = 12/216 (5%)

Query: 1   MSLSHTNKFIDFAILLNGDIRVTNRLLCAI-ESCKVIAADGGICHASQLKVVPELWIGDF 59
           M   H        IL NG+       L  + E+  V+               P++ IGD 
Sbjct: 25  MINEHYIPQA--IILANGEYPAHELPLRLLAEAQFVVCCXXAANEYISRGHTPDVIIGDG 82

Query: 60  DSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQH 119
           DS+     +++SSI      +D++  D   AVH     G R I +VG+    R D+ L +
Sbjct: 83  DSLLPEYKKRFSSIIL--QISDQETNDQTKAVHYLQSKGIRKIAIVGATGK-REDHTLGN 139

Query: 120 ITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYT 179
           I+L     +  + V   +       +   +  F        SI+     + +   G  Y 
Sbjct: 140 ISLLVEYMRSGMEVRTVTDYGTFIPVSDTQS-FASYPGQQVSIINFGA-KGLKAEGLFYP 197

Query: 180 LSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILIS 214
           LS  +          N    +  TI       + ++
Sbjct: 198 LSDFTNWWQG---TLNEAIADEFTIHCTGEYLVFLA 230


>1ig3_A Thiamin pyrophosphokinase; beta barrel, alpha/beta/alpha
           sandwich, transferase; HET: VIB; 1.90A {Mus musculus}
           (A:)
          Length = 263

 Score =  123 bits (309), Expect = 2e-29
 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 20/221 (9%)

Query: 12  FAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLK------VVPELWIGDFDSVDRT 65
             ++LN  +    R L   ++     ADGG  H   L        +PE   GDFDS+   
Sbjct: 40  CLVVLNQPLDARFRHL-WKKALLRACADGGANHLYDLTEGERESFLPEFVSGDFDSIRPE 98

Query: 66  LLQQWSS-IKRIFYPNDKDMADGEIAVHKALQSGARN-----IILVGSISGQRFDYALQH 119
           + + ++     +    D+D  D    +    +          +I+     G RFD  +  
Sbjct: 99  VKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMAS 158

Query: 120 I-TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCL----EDIENITIT 174
           + TL  +     + + +      +++L PGKH   +      S   L    +    +T T
Sbjct: 159 VNTLFQATHITPVPIIIIQKDSLIYLLQPGKHRLHVDTGMEGSWCGLIPVGQPCNQVTTT 218

Query: 175 GAKYTLSHHSLSLGSSRAVSNVVTKN--LTIMLDQGLAILI 213
           G K+ L++  L  G+  + SN    +  +T+  D  L   +
Sbjct: 219 GLKWNLTNDVLGFGTLVSTSNTYDGSGLVTVETDHPLLWTM 259


>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase,
           thiamine pyrophosphokinase, NESG, LPR114, structural
           genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
           (A:)
          Length = 227

 Score =  115 bits (289), Expect = 5e-27
 Identities = 45/209 (21%), Positives = 75/209 (35%), Gaps = 11/209 (5%)

Query: 12  FAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWS 71
             +L+ G        L  I     + AD G     +  + P   +GDFDS+D   LQ   
Sbjct: 5   VNLLVGGPTANYPADLTTIPGP-WVGADRGALRLVKRGIQPVXVVGDFDSIDAAELQTVK 63

Query: 72  S--IKRIFYPNDKDMADGEIAVHKAL-QSGARNIILVGSISGQRFDYALQ--HITLATSL 126
              +  I    D+D  D ++A+     Q     + L G+  G R D+ L    + L    
Sbjct: 64  DALVGAIVVKPDQDHTDTQLAIKSIFEQLQPDEVHLYGATGG-RLDHLLANXWLVLDPVF 122

Query: 127 KKKNINVTLTSGIEEVFILVPGKH-SFDLPENSVFSIVCLEDIENITITGAKYTLSHHSL 185
           ++    + L      V   +PG +      +    + V L    ++T+   KY L     
Sbjct: 123 RQWAPQIKLIDKQNSVRFFLPGDYQITKEADKRYLAFVPLXP-XHLTLPDEKYQLDAAYN 181

Query: 186 SLGSSRAVSNVVTKN-LTIMLDQGLAILI 213
           +       SN  + N      D G+  +I
Sbjct: 182 AYP-ISWASNEFSGNTGHFSFDAGVLAVI 209


>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex,
           compound active site, alpha-beta- alpha, beta sandwich,
           transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae}
           (A:)
          Length = 319

 Score =  109 bits (274), Expect = 2e-25
 Identities = 24/202 (11%), Positives = 55/202 (27%), Gaps = 14/202 (6%)

Query: 34  KVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHK 93
           K               +       +F S+        S+           + +       
Sbjct: 118 KQTTQYSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLV 177

Query: 94  ALQSGARNIILVGSISGQRFDYALQHITLATSLKKK--NINVTLTSGIEEVFILVPGKH- 150
             +    +++ +G I G RFD  +  IT   +L +      +   +  + +F++      
Sbjct: 178 FSKVTPISLLALGGIGG-RFDQTVHSITQLYTLSENASYFKLCYMTPTDLIFLIKKNGTL 236

Query: 151 -----SFDLPENSVFSIVCL-EDIENITITGAKYTLSHHSLS-LGSSRAVSNVVT--KNL 201
                 F         ++ + E        G K+ + +   S +    + SN        
Sbjct: 237 IEYDPQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGRVSSSNRFVGDNCC 296

Query: 202 TIMLDQGLAILI-SRPYDLQRF 222
            I     + + +      L  F
Sbjct: 297 FIDTKDDIILNVEIFVDKLIDF 318


>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin
           pyrophosphokinase, structural genomics, profun,
           bacterial targets at IGS-CNRS, france; HET: VNP; 1.96A
           {Candida albicans} PDB: 2hh9_A* (A:)
          Length = 348

 Score =  101 bits (252), Expect = 1e-22
 Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 75/280 (26%)

Query: 14  ILLNGDIRVTNRLLCAIESCKV-IAADGGICH----------------ASQLKVVPELWI 56
           ++LN  I  T  L+   + C++ + ADGG                     +   +P+  +
Sbjct: 67  LILNQKI--TIDLISLWKKCEIIVCADGGANSLYEYFNDNNHHHHHENLQRSDYIPDYIV 124

Query: 57  GDFDSVDRTLLQQWSS-IKRIFYPNDKDMADGEIAVHKALQ------------------- 96
           GDFDS+   +   + S   +I   + +   D   ++H                       
Sbjct: 125 GDFDSISPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVD 184

Query: 97  -----------------SGARNIILVGSISGQRFDYALQHITL--ATSLKKKNINVTLTS 137
                                 I ++ +I G RFD  +Q I      +     + V   +
Sbjct: 185 GLAKLWNGLNNSSDVVVDIDITIYVLNAIGG-RFDQTVQSINQLYIMNEDYPKVTVFFIT 243

Query: 138 GIEEVFILVPGKHSFDLPENSV------------FSIVCLEDIE--NITITGAKYTLSHH 183
             + +F+L  G +        +              ++ L +     +   G KY + + 
Sbjct: 244 TNDIIFLLKKGVNYISYKNRLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNW 303

Query: 184 SLSLGSSRAVSNVVT--KNLTIMLDQGLAILISRPYDLQR 221
              +    + SN ++      +     + + I     L  
Sbjct: 304 KTEMLGQVSSSNRISGETGFIVECSDDIVMNIEIDVQLDG 343


>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein
           kinase fold, transferase; 2.02A {Caenorhabditis elegans}
           (A:188-246,A:379-429)
          Length = 110

 Score = 29.9 bits (67), Expect = 0.28
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 146 VPGKHSFDLPENSVFSIVCLEDIEN------ITITGAKYTLSHH 183
           V  +H FDLPE    S V   D+          I+ +K+    H
Sbjct: 22  VDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKFVPVSH 65


>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase,
          GGT, gamma-GT, glutathione; HET: GLU; 1.60A
          {Escherichia coli K12} (A:156-200)
          Length = 45

 Score = 29.2 bits (66), Expect = 0.49
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 67 LQQWSSIKRIFYPNDKDMADGEIAV 91
          L    + K IF+   + +  G+  V
Sbjct: 20 LPNHENSKAIFWKEGEPLKKGDTLV 44


>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio
          cholerae O1 biovar eltor, structure genomics, protein
          structure initiative, MCSG; 1.80A {Vibrio cholerae}
          (A:)
          Length = 336

 Score = 25.6 bits (55), Expect = 6.1
 Identities = 6/40 (15%), Positives = 12/40 (30%)

Query: 52 PELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAV 91
             W G  D  D    ++   I       +    +  +A+
Sbjct: 8  EHTWQGRHDPEDGQAGRRVHHIACPIQVGELANQEPGVAL 47


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,637,665
Number of extensions: 70203
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 16
Length of query: 222
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 137
Effective length of database: 2,082,624
Effective search space: 285319488
Effective search space used: 285319488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)