RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] (222 letters) >3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative; 2.10A {Geobacillus thermodenitrificans ng80-2} (A:) Length = 223 Score = 133 bits (335), Expect = 2e-32 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 9/206 (4%) Query: 14 ILLNGDIRVTNRLLCAI-ESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS 72 I+ G + L E + D G + P GDFDS+ + + Sbjct: 5 IVGGGPRELLPDLRFYDGEDVXWVGVDRGTXTLLEAGFRPVRAFGDFDSLPAEDVVKLQQ 64 Query: 73 --IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKN 130 +P +KD D EIA+ A++ AR I L G+ G R D+ ++ L LK + Sbjct: 65 AFPDLDVWPAEKDKTDXEIALDWAVEQTARXIRLFGATGG-RLDHLFGNVELL--LKYAD 121 Query: 131 INVTLTSGIEEVFILVPGKHSF-DLPENSVFSIV-CLEDIENITITGAKYTLSHHSLSLG 188 + + + + +PG ++ S + E + T+TG KY L++ +S G Sbjct: 122 RPIEIVDRQNVLTVHLPGTYTVXYDARYCYVSYIPVSETVAEFTLTGFKYPLTNXHISRG 181 Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213 S+ +SN + ++ T +G+ I Sbjct: 182 STLXISNELIQSSGTFSFSEGILXXI 207 >3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} (A:) Length = 212 Score = 128 bits (324), Expect = 4e-31 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 7/205 (3%) Query: 14 ILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS- 72 +L + +L + I D G + + P+ +GDFDS+ + Sbjct: 5 LLCGNRN-LPKHILVEHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQ 63 Query: 73 IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDY--ALQHITLATSLKKKN 130 I+ Y ++KD D + + +A++ G RNI + G+ G R D+ I K N Sbjct: 64 IEINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGAT-GGRLDHFXGALQILEKPEYAKXN 122 Query: 131 INVTLTSGIEEVFILVPGKHS-FDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLGS 189 IN+ L E+ + G+ + + S + + I++ G KY L + +L LGS Sbjct: 123 INIKLIDDTNEIQFIQKGQFNVTYSEQFPYISFIPVIYPTVISLKGFKYNLQNETLKLGS 182 Query: 190 SRAVSNVVTKN-LTIMLDQGLAILI 213 + +SN ++++ I + +G + I Sbjct: 183 TLTISNELSQSCGNIEIIEGSVLXI 207 >3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans} (A:) Length = 218 Score = 127 bits (321), Expect = 1e-30 Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 12/214 (5%) Query: 14 ILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSI 73 + GD+ R + + D G + ++ +L IGDFDSV +Q + Sbjct: 6 LFSGGDLTYFTR-----DFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAK 60 Query: 74 --KRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKN- 130 K + P +K+ D E+A+ R I+V G R D+ L +I L + Sbjct: 61 AKKLVXAPAEKNDTDTELALKTIFDCFGRVEIIVFGAFGGRIDHXLSNIFLPSDPDLAPF 120 Query: 131 -INVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLGS 189 L V G+H + + V+ + +++I AKY L+ + Sbjct: 121 XRCFKLRDEQNLVEFFPAGQHQIEQATDXVYISFXAANGAHLSIQDAKYELTEENYF-QK 179 Query: 190 SRAVSNVVTKN-LTIMLDQGLAILISRPYDLQRF 222 SN + + G ++I + D Sbjct: 180 KIYSSNEFKDKPICFSVASGYVVVI-QTKDRTLE 212 >2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, PSI-2, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron vpi-5482} (A:) Length = 231 Score = 126 bits (318), Expect = 2e-30 Identities = 44/216 (20%), Positives = 75/216 (34%), Gaps = 12/216 (5%) Query: 1 MSLSHTNKFIDFAILLNGDIRVTNRLLCAI-ESCKVIAADGGICHASQLKVVPELWIGDF 59 M H IL NG+ L + E+ V+ P++ IGD Sbjct: 25 MINEHYIPQA--IILANGEYPAHELPLRLLAEAQFVVCCXXAANEYISRGHTPDVIIGDG 82 Query: 60 DSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQH 119 DS+ +++SSI +D++ D AVH G R I +VG+ R D+ L + Sbjct: 83 DSLLPEYKKRFSSIIL--QISDQETNDQTKAVHYLQSKGIRKIAIVGATGK-REDHTLGN 139 Query: 120 ITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYT 179 I+L + + V + + + F SI+ + + G Y Sbjct: 140 ISLLVEYMRSGMEVRTVTDYGTFIPVSDTQS-FASYPGQQVSIINFGA-KGLKAEGLFYP 197 Query: 180 LSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILIS 214 LS + N + TI + ++ Sbjct: 198 LSDFTNWWQG---TLNEAIADEFTIHCTGEYLVFLA 230 >1ig3_A Thiamin pyrophosphokinase; beta barrel, alpha/beta/alpha sandwich, transferase; HET: VIB; 1.90A {Mus musculus} (A:) Length = 263 Score = 123 bits (309), Expect = 2e-29 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 20/221 (9%) Query: 12 FAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLK------VVPELWIGDFDSVDRT 65 ++LN + R L ++ ADGG H L +PE GDFDS+ Sbjct: 40 CLVVLNQPLDARFRHL-WKKALLRACADGGANHLYDLTEGERESFLPEFVSGDFDSIRPE 98 Query: 66 LLQQWSS-IKRIFYPNDKDMADGEIAVHKALQSGARN-----IILVGSISGQRFDYALQH 119 + + ++ + D+D D + + +I+ G RFD + Sbjct: 99 VKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMAS 158 Query: 120 I-TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCL----EDIENITIT 174 + TL + + + + +++L PGKH + S L + +T T Sbjct: 159 VNTLFQATHITPVPIIIIQKDSLIYLLQPGKHRLHVDTGMEGSWCGLIPVGQPCNQVTTT 218 Query: 175 GAKYTLSHHSLSLGSSRAVSNVVTKN--LTIMLDQGLAILI 213 G K+ L++ L G+ + SN + +T+ D L + Sbjct: 219 GLKWNLTNDVLGFGTLVSTSNTYDGSGLVTVETDHPLLWTM 259 >3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1} (A:) Length = 227 Score = 115 bits (289), Expect = 5e-27 Identities = 45/209 (21%), Positives = 75/209 (35%), Gaps = 11/209 (5%) Query: 12 FAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWS 71 +L+ G L I + AD G + + P +GDFDS+D LQ Sbjct: 5 VNLLVGGPTANYPADLTTIPGP-WVGADRGALRLVKRGIQPVXVVGDFDSIDAAELQTVK 63 Query: 72 S--IKRIFYPNDKDMADGEIAVHKAL-QSGARNIILVGSISGQRFDYALQ--HITLATSL 126 + I D+D D ++A+ Q + L G+ G R D+ L + L Sbjct: 64 DALVGAIVVKPDQDHTDTQLAIKSIFEQLQPDEVHLYGATGG-RLDHLLANXWLVLDPVF 122 Query: 127 KKKNINVTLTSGIEEVFILVPGKH-SFDLPENSVFSIVCLEDIENITITGAKYTLSHHSL 185 ++ + L V +PG + + + V L ++T+ KY L Sbjct: 123 RQWAPQIKLIDKQNSVRFFLPGDYQITKEADKRYLAFVPLXP-XHLTLPDEKYQLDAAYN 181 Query: 186 SLGSSRAVSNVVTKN-LTIMLDQGLAILI 213 + SN + N D G+ +I Sbjct: 182 AYP-ISWASNEFSGNTGHFSFDAGVLAVI 209 >1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} (A:) Length = 319 Score = 109 bits (274), Expect = 2e-25 Identities = 24/202 (11%), Positives = 55/202 (27%), Gaps = 14/202 (6%) Query: 34 KVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHK 93 K + +F S+ S+ + + Sbjct: 118 KQTTQYSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLV 177 Query: 94 ALQSGARNIILVGSISGQRFDYALQHITLATSLKKK--NINVTLTSGIEEVFILVPGKH- 150 + +++ +G I G RFD + IT +L + + + + +F++ Sbjct: 178 FSKVTPISLLALGGIGG-RFDQTVHSITQLYTLSENASYFKLCYMTPTDLIFLIKKNGTL 236 Query: 151 -----SFDLPENSVFSIVCL-EDIENITITGAKYTLSHHSLS-LGSSRAVSNVVT--KNL 201 F ++ + E G K+ + + S + + SN Sbjct: 237 IEYDPQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGRVSSSNRFVGDNCC 296 Query: 202 TIMLDQGLAILI-SRPYDLQRF 222 I + + + L F Sbjct: 297 FIDTKDDIILNVEIFVDKLIDF 318 >2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural genomics, profun, bacterial targets at IGS-CNRS, france; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A* (A:) Length = 348 Score = 101 bits (252), Expect = 1e-22 Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 75/280 (26%) Query: 14 ILLNGDIRVTNRLLCAIESCKV-IAADGGICH----------------ASQLKVVPELWI 56 ++LN I T L+ + C++ + ADGG + +P+ + Sbjct: 67 LILNQKI--TIDLISLWKKCEIIVCADGGANSLYEYFNDNNHHHHHENLQRSDYIPDYIV 124 Query: 57 GDFDSVDRTLLQQWSS-IKRIFYPNDKDMADGEIAVHKALQ------------------- 96 GDFDS+ + + S +I + + D ++H Sbjct: 125 GDFDSISPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVD 184 Query: 97 -----------------SGARNIILVGSISGQRFDYALQHITL--ATSLKKKNINVTLTS 137 I ++ +I G RFD +Q I + + V + Sbjct: 185 GLAKLWNGLNNSSDVVVDIDITIYVLNAIGG-RFDQTVQSINQLYIMNEDYPKVTVFFIT 243 Query: 138 GIEEVFILVPGKHSFDLPENSV------------FSIVCLEDIE--NITITGAKYTLSHH 183 + +F+L G + + ++ L + + G KY + + Sbjct: 244 TNDIIFLLKKGVNYISYKNRLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNW 303 Query: 184 SLSLGSSRAVSNVVT--KNLTIMLDQGLAILISRPYDLQR 221 + + SN ++ + + + I L Sbjct: 304 KTEMLGQVSSSNRISGETGFIVECSDDIVMNIEIDVQLDG 343 >1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} (A:188-246,A:379-429) Length = 110 Score = 29.9 bits (67), Expect = 0.28 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%) Query: 146 VPGKHSFDLPENSVFSIVCLEDIEN------ITITGAKYTLSHH 183 V +H FDLPE S V D+ I+ +K+ H Sbjct: 22 VDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKFVPVSH 65 >2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} (A:156-200) Length = 45 Score = 29.2 bits (66), Expect = 0.49 Identities = 6/25 (24%), Positives = 11/25 (44%) Query: 67 LQQWSSIKRIFYPNDKDMADGEIAV 91 L + K IF+ + + G+ V Sbjct: 20 LPNHENSKAIFWKEGEPLKKGDTLV 44 >1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} (A:) Length = 336 Score = 25.6 bits (55), Expect = 6.1 Identities = 6/40 (15%), Positives = 12/40 (30%) Query: 52 PELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAV 91 W G D D ++ I + + +A+ Sbjct: 8 EHTWQGRHDPEDGQAGRRVHHIACPIQVGELANQEPGVAL 47 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.137 0.393 Gapped Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,637,665 Number of extensions: 70203 Number of successful extensions: 169 Number of sequences better than 10.0: 1 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 16 Length of query: 222 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 137 Effective length of database: 2,082,624 Effective search space: 285319488 Effective search space used: 285319488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.5 bits)