BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781122|ref|YP_003065535.1| putative thiamine
pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
(222 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 454 bits (1168), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFD 60
MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFD
Sbjct: 1 MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFD 60
Query: 61 SVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHI 120
SVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHI
Sbjct: 61 SVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHI 120
Query: 121 TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTL 180
TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTL
Sbjct: 121 TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTL 180
Query: 181 SHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILISRPYDLQRF 222
SHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILISRPYDLQRF
Sbjct: 181 SHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILISRPYDLQRF 222
>gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 400
Score = 26.6 bits (57), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 29/117 (24%)
Query: 123 ATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIV-CLEDIENITITGAKYT-- 179
AT + + + + GI+ V L G+ FD+PEN +++V +E E KYT
Sbjct: 15 ATLVAAQRVRDLRSKGID-VLCLTAGEPDFDMPENVKYAVVRAMERGET------KYTAV 67
Query: 180 -------------------LSHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILISRPY 217
L + S + +V+ L ++ G +LI RPY
Sbjct: 68 AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPY 124
>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 23.9 bits (50), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 24 NRLLCAIESCKVIAADG------GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
N+++ E + I D GI +Q+K+ P LW +F RT+L +
Sbjct: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 23.9 bits (50), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 24 NRLLCAIESCKVIAADG------GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
N+++ E + I D GI +Q+K+ P LW +F RT+L +
Sbjct: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
>537021.9.peg.75_1
Length = 136
Score = 23.5 bits (49), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
GI +Q+K+ P LW +F RT+L +
Sbjct: 22 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 51
>gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 125
Score = 23.1 bits (48), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
GI +Q+K+ P LW +F RT+L +
Sbjct: 11 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 40
>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 125
Score = 23.1 bits (48), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
GI +Q+K+ P LW +F RT+L +
Sbjct: 11 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 40
>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 357
Score = 22.3 bits (46), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 76 IFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFD 114
I +P++KD + K Q NIIL+G ++ QR +
Sbjct: 313 IVHPDNKD------CIIKKFQENNENIILIGEVT-QRSE 344
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,039
Number of Sequences: 1233
Number of extensions: 5693
Number of successful extensions: 19
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 11
length of query: 222
length of database: 328,796
effective HSP length: 71
effective length of query: 151
effective length of database: 241,253
effective search space: 36429203
effective search space used: 36429203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)