RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01189
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198
Score = 68.5 bits (168), Expect = 5e-12
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 18/190 (9%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L A + +R++ + S ++ GE + + GPNG GKTTLL++L G ++PD G +
Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQA---- 400
D+ +I +L G + L A + A
Sbjct: 61 GTALAEQRDEPHRNI----LYLGHLPGLKPE-LSALENLHFWAAIHGGAQRTIEDALAAV 115
Query: 401 ------HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTIT---Q 451
LS G++ R +AR+ I+DEPT LD + L +
Sbjct: 116 GLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175
Query: 452 LQGTILIVSH 461
G +L+ +H
Sbjct: 176 RGGIVLLTTH 185