RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR02857

>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

 Score = 83.9 bits (208), Expect = 1e-16
 Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 33/216 (15%)

Query: 283 LVLEADKITKQYDDR--LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
             LE   ++  Y  R    ++  S  +  GE + +VGP+GAGK+TLL LL G + P  G 
Sbjct: 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378

Query: 341 ITL-GTNLKIATIDQKREDID--------PDKSLAS--YLTGSSGDSLMVRGESRHVAGY 389
           I + G  L  A  D  R+ I            ++A    L         +R  +   AG 
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIR-RALERAG- 436

Query: 390 IKDFLFHPDQAHSLMKH---------LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
           + +F+     A               LSGG+  R  +AR   +    L++DEPT  LD E
Sbjct: 437 LDEFV----AALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492

Query: 441 TLDFLERTITQL-QG-TILIVSHDRDFL---DRTVT 471
           T   +   +  L QG T+L+V+H        DR V 
Sbjct: 493 TEALVTEALRALAQGRTVLLVTHRLALAERADRIVV 528