RPSBLAST alignment for GI: 254781123 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 90.5 bits (225), Expect = 1e-18
Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 26/211 (12%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
L +++++A G +L V L++ E + L+G NG+GK+TLLK G+ P+SG++
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 65 ---------HSSSRLG--YLEQNPDLSHFSTISQYI--------DDTIKDTIEAPYSPYS 105
H +R G Y+ + + T+ + + K +E Y +
Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP 120
Query: 106 LLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK 165
LK+ R + LS G+ + +A+ + L+SRP +L+LDEP+ L + + + + + +
Sbjct: 121 RLKE---RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177
Query: 166 INS---ALIFVSHDRRFLETLSTTTVWLDRG 193
+ ++ V + RF ++ L+RG
Sbjct: 178 LRDEGVTILLVEQNARFALEIADRAYVLERG 208