RPSBLAST alignment for GI: 254781123 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 45.6 bits (108), Expect = 4e-05
Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 31/172 (18%)
Query: 36 LVGCNGSGKSTL---LKIAAGITEPQSGNVFLHSSSRLG--------YLEQNPDLSHFST 84
+VG NG+GK+T+ LK A P + H + L T
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYT 86
Query: 85 ISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQT-------RCVALMKMLIS 137
I++ + +++ I + L + R S G+ R AL + S
Sbjct: 87 ITRSL-AILENVI---FCHQGESNWPLLDMRGR---CSGGEKVLASLIIRL-ALAETFGS 138
Query: 138 RPDILILDEPTNHLD-----FRTIHWMEQELLKINSALIFVSHDRRFLETLS 184
IL LDEPT +LD +E+ + N LI ++HD ++
Sbjct: 139 NCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190