RPSBLAST alignment for GI: 254781123 and conserved domain: cd03240

>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 31/172 (18%)

Query: 36  LVGCNGSGKSTL---LKIAAGITEPQSGNVFLHSSSRLG--------YLEQNPDLSHFST 84
           +VG NG+GK+T+   LK A     P +     H    +          L          T
Sbjct: 27  IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYT 86

Query: 85  ISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQT-------RCVALMKMLIS 137
           I++ +   +++ I   +          L  + R    S G+        R  AL +   S
Sbjct: 87  ITRSL-AILENVI---FCHQGESNWPLLDMRGR---CSGGEKVLASLIIRL-ALAETFGS 138

Query: 138 RPDILILDEPTNHLD-----FRTIHWMEQELLKINSALIFVSHDRRFLETLS 184
              IL LDEPT +LD           +E+   + N  LI ++HD   ++   
Sbjct: 139 NCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190