RPSBLAST alignment for GI: 254781123 and conserved domain: cd03245
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220
Score = 78.3 bits (193), Expect = 6e-15
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 24/204 (11%)
Query: 285 LEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+E ++ Y + + + SL I GE + I+G G+GK+TLLKLL G KP G +
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 343 LGTNLKIATIDQK--REDIDPDKSLASYLTGSSGDSLMVRG---------ESRHVAGYIK 391
L I +D R +I + G+ D++ + + +AG +
Sbjct: 63 LD-GTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAG-VT 120
Query: 392 DFL-FHPDQAHSLM-----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL 445
DF+ HP+ L + LSGG++ +AR L L++DEPT+ +D + + L
Sbjct: 121 DFVNKHPN-GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 446 ERTITQLQG--TILIVSHDRDFLD 467
+ + QL G T++I++H LD
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLD 203