RPSBLAST alignment for GI: 254781123 and conserved domain: cd03248

>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226
 Score = 65.4 bits (159), Expect = 5e-11
 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 20/184 (10%)

Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL------- 347
           D LV++D S  +H GE   +VGP+G+GK+T++ LL    +P  G + L G  +       
Sbjct: 26  DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85

Query: 348 ---KIATIDQKREDIDPDKSLA---SY-LTGSSGDSLMVRGESRHVAGYIKDFLFHPD-Q 399
              K++ + Q  E +   +SL    +Y L   S + +    +  H   +I +     D +
Sbjct: 86  LHSKVSLVGQ--EPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143

Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ--LQGTIL 457
                  LSGG+K R  +AR L +    LI+DE T+ LD E+   +++ +     + T+L
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203

Query: 458 IVSH 461
           +++H
Sbjct: 204 VIAH 207