RPSBLAST alignment for GI: 254781123 and conserved domain: cd03248
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226
Score = 65.4 bits (159), Expect = 5e-11
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 20/184 (10%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL------- 347
D LV++D S +H GE +VGP+G+GK+T++ LL +P G + L G +
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85
Query: 348 ---KIATIDQKREDIDPDKSLA---SY-LTGSSGDSLMVRGESRHVAGYIKDFLFHPD-Q 399
K++ + Q E + +SL +Y L S + + + H +I + D +
Sbjct: 86 LHSKVSLVGQ--EPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ--LQGTIL 457
LSGG+K R +AR L + LI+DE T+ LD E+ +++ + + T+L
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203
Query: 458 IVSH 461
+++H
Sbjct: 204 VIAH 207