RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781123|ref|YP_003065536.1| putative ABC transporter,
ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
(610 letters)
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 423 bits (1091), Expect = e-119
Identities = 224/649 (34%), Positives = 341/649 (52%), Gaps = 56/649 (8%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
MSL + + + LL + L I+ ER+CLVG NG+GKSTL+KI G G
Sbjct: 1 MSL--ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDG 58
Query: 61 NVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIK-------------DTIEAPYSPYSLL 107
+ + L+Q+P + T+ ++ + I+ +E S +L
Sbjct: 59 RIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLN 118
Query: 108 KKFNLREQ----------DRIEN---------------LSVGQTRCVALMKMLISRPDIL 142
+ L+EQ +RI LS G R AL + L+S PD+L
Sbjct: 119 ELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVL 178
Query: 143 ILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGF 202
+LDEPTNHLD TI W+E L ++IF+SHDR F+ ++T V LDRG L +
Sbjct: 179 LLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNY 238
Query: 203 -AYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQE 261
Y K+ L+ E+++ +K E+ W+R G+ ARR RN RV+ L K L+
Sbjct: 239 DQYLLE-KEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRAL----KALRR 293
Query: 262 ---QKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGP 318
+++ T + ++ SGK+V E + + Q D + +VKDFS ++ G+ I ++GP
Sbjct: 294 ERSERREVMGTAKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGP 353
Query: 319 NGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLM 378
NG GKTTLLKL+ G+++ D G I GT L++A DQ R ++DP+K++ L +M
Sbjct: 354 NGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNL-AEGKQEVM 412
Query: 379 VRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
V G RHV GY++DFLFHP +A + +K LSGGE+ R ++AR+ +P N LI+DEPTNDLD
Sbjct: 413 VNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
Query: 439 FETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLV 498
ETL+ LE + QGT+L+VSHDR F+D TVT I + NG +Y GGY D
Sbjct: 473 VETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECW----IFEGNGKIGRYVGGYHDARQ 528
Query: 499 QQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITE 558
QQ + Q + + K E ++ +LSY + LE+LPQ + ++ +I
Sbjct: 529 QQAQYLALKQPAVKKKE--EAAAPKAETVKRSSKKLSYKLQRELEQLPQLLEDLEAEIEA 586
Query: 559 KEQQINDQNLISNEGKEIHQLYHDLDQMYQDVKEKEEQWLTLEIMQEEE 607
+ Q+ D + S ++ ++ DL Q+++ E+W LE ++
Sbjct: 587 LQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEALKNGG 635
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 311 bits (800), Expect = 3e-85
Identities = 172/535 (32%), Positives = 283/535 (52%), Gaps = 85/535 (15%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL 79
+L+D+ LS P +I ++G NG+GKSTLL+I AG+ + +G ++GYL Q P L
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQL 79
Query: 80 SHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN----------------LREQDRIE---- 119
T+ + +++ + + +A L +FN L EQ ++
Sbjct: 80 DPTKTVRENVEEGVAEIKDA-------LDRFNEISAKFAEPDADMDALLAEQAELQEIID 132
Query: 120 ----------------------------NLSVGQTRCVALMKMLISRPDILILDEPTNHL 151
LS G+ R VAL ++L+S+PD+L+LDEPTNHL
Sbjct: 133 AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHL 192
Query: 152 DFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAY---FESW 208
D ++ W+EQ L + ++ V+HDR FL+ ++ + LDRG +G + + SW
Sbjct: 193 DAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG------RGIPWEGNYSSW 246
Query: 209 ---KKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQKKS 265
K+ L+QE+ +K + E EW+R AR+ ++ R+ E+ Q + QK++
Sbjct: 247 LEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQ-EFQKRN 305
Query: 266 FHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTT 325
T + ++ G V+EA+ ++K + D+L++ D S ++ G +G++GPNGAGK+T
Sbjct: 306 --ETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKST 363
Query: 326 LLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGE--- 382
L +++TG+ +PD G I +G +K+A +DQ R+ +DP+K++ + S G ++ G+
Sbjct: 364 LFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTV--WEEISGGLDIIQLGKREV 421
Query: 383 -SRHVAGYIKDFLFH-PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
SR Y+ F F DQ + LSGGE+ R +A+ L N L++DEPTNDLD E
Sbjct: 422 PSR---AYVGRFNFKGSDQ-QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVE 477
Query: 441 TLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSD 495
TL LE + + G +++SHDR FLDR T +A + D + W + G YS+
Sbjct: 478 TLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEG--DSHVEW--FEGNYSE 528
Score = 93.1 bits (232), Expect = 2e-19
Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 31/241 (12%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
++ +++S G L+ D+ + P + ++G NG+GKSTL ++ G +P SG + +
Sbjct: 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381
Query: 65 HSSSRLGYLEQ-----NPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLR---EQD 116
+ +L Y++Q +P+ + + IS +D E P Y + +FN + +Q
Sbjct: 382 GETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY--VGRFNFKGSDQQK 439
Query: 117 RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHD 176
++ LS G+ V L K L S ++L+LDEPTN LD T+ +E+ LL+ + +SHD
Sbjct: 440 KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHD 499
Query: 177 RRFLETLSTTTVWLDRGCLHHL-----------DQGFAYFESWKKNILQQEQIRYHNLKK 225
R F LDR H L + ++ +E KK L ++ + H +K
Sbjct: 500 RWF----------LDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGEDADQPHRIKY 549
Query: 226 K 226
K
Sbjct: 550 K 550
Score = 83.0 bits (206), Expect = 2e-16
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 406 HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDF 465
LSGGE+ R + R+L + L++DEPTN LD E++ +LE+ + + GT++ V+HDR F
Sbjct: 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYF 220
Query: 466 LDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQ-SLQEE---- 520
LD V I +E G I + G YS L Q++K +K+ Q +L+ E
Sbjct: 221 LD-NVAGWI----LELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWV 275
Query: 521 -TVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKI 556
+ K ++ K K RL+ ++LL + + ++ I
Sbjct: 276 RSSPKARQAKSKARLARYEELLSQEFQKRNETAEIYI 312
Score = 53.8 bits (130), Expect = 1e-07
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 282 KLVLEADKITKQYD-DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
+ + ++++K + ++KD SL G IG++G NGAGK+TLL+++ G K G
Sbjct: 2 QYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGE 61
Query: 341 ITLGTNLKIATIDQKREDIDPDKS 364
+K+ + Q+ + +DP K+
Sbjct: 62 ARPAPGIKVGYLPQEPQ-LDPTKT 84
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 305 bits (785), Expect = 2e-83
Identities = 170/534 (31%), Positives = 271/534 (50%), Gaps = 85/534 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLS 80
L+D+ LS P +I ++G NG+GKSTLL+I AG+ + G ++GYL Q P L
Sbjct: 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82
Query: 81 HFSTISQYIDDTIKDTIEAPYSPYSLLKKFN----------------LREQ--------- 115
T+ + +++ + + A L +FN EQ
Sbjct: 83 PEKTVRENVEEGVAEVKAA-------LDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA 135
Query: 116 ------DR-----------------IENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
D + LS G+ R VAL ++L+ +PD+L+LDEPTNHLD
Sbjct: 136 ADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Query: 153 FRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAY---FESW- 208
++ W+EQ L ++ V+HDR FL+ ++ + LDRG +G + + SW
Sbjct: 196 AESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRG------RGIPWEGNYSSWL 249
Query: 209 --KKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQKKSF 266
K L QE+ + +K + E EW+R AR+ ++ R+ E+ + + QK++
Sbjct: 250 EQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSE-EYQKRN- 307
Query: 267 HSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTL 326
T + + G V+EA+ ++K + DRL++ D S + G +GI+GPNGAGK+TL
Sbjct: 308 -ETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTL 366
Query: 327 LKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGE---- 382
K++TG+ +PD G I +G +K+A +DQ R+ +DP+K++ + S G ++ G
Sbjct: 367 FKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTV--WEEISGGLDIIKVGNREIP 424
Query: 383 SRHVAGYIKDFLFH-PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET 441
SR Y+ F F DQ + LSGGE+ R +A+ L Q N L++DEPTNDLD ET
Sbjct: 425 SR---AYVGRFNFKGGDQ-QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480
Query: 442 LDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSD 495
L LE + + G +++SHDR FLDR T +A + + + G + +
Sbjct: 481 LRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEG----DSQVEWFEGNFQE 530
Score = 80.5 bits (200), Expect = 1e-15
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 33/210 (15%)
Query: 37 VGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQN-----PDLSHFSTISQYIDD 91
+G NG+GKSTL K+ G +P SG + + + +L Y++Q+ P+ + + IS D
Sbjct: 356 IGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGG-LD 414
Query: 92 TIK-DTIEAPYSPYSLLKKFNLR---EQDRIENLSVGQTRCVALMKMLISRPDILILDEP 147
IK E P Y + +FN + +Q ++ LS G+ + L K L ++L+LDEP
Sbjct: 415 IIKVGNREIPSRAY--VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472
Query: 148 TNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLD-------- 199
TN LD T+ +E+ LL+ + +SHDR F LDR H L
Sbjct: 473 TNDLDVETLRALEEALLEFPGCAVVISHDRWF----------LDRIATHILAFEGDSQVE 522
Query: 200 --QG-FAYFESWKKNILQQEQIRYHNLKKK 226
+G F +E KK L + R H +K K
Sbjct: 523 WFEGNFQEYEEDKKRRLGADAARPHRIKYK 552
Score = 52.0 bits (126), Expect = 5e-07
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 289 KITKQYD-DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNL 347
+++K + ++KD SL G IG++G NGAGK+TLL+++ G K G +
Sbjct: 11 RVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI 70
Query: 348 KIATIDQKREDIDPDKS 364
K+ + Q+ + +DP+K+
Sbjct: 71 KVGYLPQEPQ-LDPEKT 86
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 208 bits (531), Expect = 5e-54
Identities = 134/384 (34%), Positives = 206/384 (53%), Gaps = 32/384 (8%)
Query: 129 VALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTV 188
V L + L S PDIL+LDEPTN+LD TI W+E L + NS +I +SHDR FL ++ T
Sbjct: 164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMA 223
Query: 189 WLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKNE-AE-KEWL-RYGVTARR-KR 244
LD G L + G Y E +E++ N KKK + AE + ++ R+ A + K+
Sbjct: 224 DLDYGEL-RVYPG-NYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQ 281
Query: 245 NVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKL---VLEADKITKQYDDRLVVK 301
R K++ +I +L+E K S S ++ Q KL LE + +TK +D+ + K
Sbjct: 282 ATSRAKQIDKI--KLEEVKPS--SRQNPFIRFEQDK-KLHRNALEVENLTKGFDNGPLFK 336
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRE-DID 360
+ +L + GE + I+G NG GKTTLL+ L G+++PD G + N I Q D +
Sbjct: 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFE 396
Query: 361 PDKSLASYL---TGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIV 417
D +L ++ D VR G + LF D +K LSGGEK R +
Sbjct: 397 NDLTLFDWMSQWRQEGDDEQAVR-------GTLGRLLFSQDDIKKSVKVLSGGEKGRMLF 449
Query: 418 ARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQ 477
+++ Q N L+MDEPTN +D E+++ L + + +GT++ VSHDR+F+ S++A +
Sbjct: 450 GKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV-----SSLATR 504
Query: 478 NIE-DPNGYWIKYAGGYSDMLVQQ 500
IE P+G + ++G Y + L Q
Sbjct: 505 IIEITPDGV-VDFSGTYEEYLRSQ 527
Score = 97.3 bits (243), Expect = 1e-20
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L +++++ L +++ L ++ ER+ ++G NG GK+TLL+ G EP SG V
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379
Query: 66 SSSRLGYLEQNP------DLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRI- 118
++ +GY Q+ DL+ F +SQ+ D +A L L QD I
Sbjct: 380 ENANIGYYAQDHAYDFENDLTLFDWMSQW--RQEGDDEQAVRGTLGRL----LFSQDDIK 433
Query: 119 ---ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSH 175
+ LS G+ + K+++ +P++L++DEPTNH+D +I + L K LIFVSH
Sbjct: 434 KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSH 493
Query: 176 DRRFLETLST 185
DR F+ +L+T
Sbjct: 494 DREFVSSLAT 503
Score = 55.7 bits (135), Expect = 3e-08
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 33 RICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQN 76
R L+G NG GKST +KI G EP +GNV L + RLG L Q+
Sbjct: 29 RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQD 72
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 314 GIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQ 354
G++G NG GK+T +K+L G ++P G ++L N ++ + Q
Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 179 bits (456), Expect = 2e-45
Identities = 166/637 (26%), Positives = 284/637 (44%), Gaps = 66/637 (10%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL 79
LL + +I P +++ LVG NG GKSTLL + G+ + +L ++ Q
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 80 SHFSTISQYID-------------------------------DTIKD-TIEAPYSPYSLL 107
+ ID D I TI + + SLL
Sbjct: 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAA--SLL 133
Query: 108 KKFNLRE---QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL 164
+ + + S G + L + LI R D+L+LDEPTNHLD + W+E+ L
Sbjct: 134 HGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLK 193
Query: 165 KINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLK 224
LI +SHDR FL+ + + +++ L ++ FE + L Q+Q Y + +
Sbjct: 194 SYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQQ 253
Query: 225 KKNEAEKEWL-RYGVTARR-KRNVRRVKELHEIQKQLQEQ-KKSFHSTIQTHLQTTQSSG 281
++ + ++ R+ A + K+ R+K L ++ FH + + +S
Sbjct: 254 ERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFS----FRAPESLP 309
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
+L+ +K++ Y DR+++ L + G IG++G NGAGK+TL+KLL G++ P G I
Sbjct: 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
Query: 342 TLGTNLKIATIDQKR-EDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQA 400
L +K+ Q + E + D+S +L L + + + Y+ F F D+
Sbjct: 370 GLAKGIKLGYFAQHQLEFLRADESPLQHLA-----RLAPQELEQKLRDYLGGFGFQGDKV 424
Query: 401 HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVS 460
+ SGGEK R ++A ++ Q N L++DEPTN LD + L + +G +++VS
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVS 484
Query: 461 HDRDFLDRTVTST---IAAQNIEDPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQSL 517
HDR L R+ T + +E +G Y SD VQ++++ K A S
Sbjct: 485 HDRHLL-RSTTDDLYLVHDGKVEPFDGDLEDYQQWLSD--VQKQENQTDEAPKENNANSA 541
Query: 518 QEETVKKEKKQKRKNRLSYSQKLL--LERLPQEIHKIQLKITEKEQQINDQNLISNEGK- 574
Q +K++K++ + +Q L + RL +E+ K+ ++ + E+++ D L K
Sbjct: 542 QA---RKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKA 598
Query: 575 EIHQLYHDLDQMYQDVKEKEEQWL----TLEIMQEEE 607
E+ ++E E WL LE M E
Sbjct: 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLLEG 635
Score = 95.2 bits (237), Expect = 5e-20
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 25/196 (12%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L+++ +SA G +L + L++ P RI L+G NG+GKSTL+K+ AG P SG +
Sbjct: 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG 370
Query: 64 LHSSSRLGYLEQN------PD---LSHFSTIS-QYIDDTIKDTIEAPYSPYSLLKKFNLR 113
L +LGY Q+ D L H + ++ Q ++ ++D L F +
Sbjct: 371 LAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRD----------YLGGFGFQ 420
Query: 114 EQ---DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL 170
+ S G+ + L ++ RP++L+LDEPTNHLD + + L+ AL
Sbjct: 421 GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL 480
Query: 171 IFVSHDRRFLETLSTT 186
+ VSHDR L STT
Sbjct: 481 VVVSHDRHLLR--STT 494
Score = 90.2 bits (224), Expect = 1e-18
Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 44/283 (15%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIA------ 350
R+++ + + I+ G+ +G+VG NG GK+TLL LL +I D G T N ++A
Sbjct: 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQET 73
Query: 351 ----------TIDQKREDIDPDKSLASYLTGSSGDSL-MVRGE----------SRHVAGY 389
ID RE + L + G ++ + G+ SR A
Sbjct: 74 PALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSR-AASL 132
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
+ F +Q + SGG +MR +A+ L + L++DEPTN LD + + +LE+ +
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192
Query: 450 TQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDM-------LVQQKK 502
QGT++++SHDRDFLD V I +IE + + +Y G YS L QQ+
Sbjct: 193 KSYQGTLILISHDRDFLDPIVDKII---HIEQQSLF--EYTGNYSSFEVQRATRLAQQQA 247
Query: 503 SHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLERL 545
+ + Q++ QS + + + + K + + S+ +LER+
Sbjct: 248 MYESQQERVAHLQSY----IDRFRAKATKAKQAQSRIKMLERM 286
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 115 bits (290), Expect = 3e-26
Identities = 96/355 (27%), Positives = 162/355 (45%), Gaps = 29/355 (8%)
Query: 129 VALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTV 188
+AL + L PD+L+LDEPTNHLD + W+E LLK I VSH R FL T+ T +
Sbjct: 353 IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL 412
Query: 189 WLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKNEAEKEWL--RYGVTARRKRNV 246
L L + FE ++ L+ +Q + +++ + + ++ A+R V
Sbjct: 413 HLHGQKLVTYKGDYDTFERTREEQLKNQQ-KAFESNERSRSHMQAFIDKFRYNAKRASLV 471
Query: 247 R-RVKELHEIQKQLQ-----EQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVV 300
+ R+K L + + K F + + ++ +D L+
Sbjct: 472 QSRIKALDRLGHVDAVVNDPDYKFEFPTP------DDRPGPPIISFSDASFGYPGGPLLF 525
Query: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED-- 358
K+ + I I +VGPNG GK+T+LKL++G+++P G + +++A Q D
Sbjct: 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGL 585
Query: 359 ---IDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRA 415
+P + G L S V G + A M LSGG+K R
Sbjct: 586 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL---------ALQPMYTLSGGQKSRV 636
Query: 416 IVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTV 470
A++ + + L++DEP+N LD + ++ L + + QG +L+VSHD + +V
Sbjct: 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSV 691
Score = 79.1 bits (195), Expect = 3e-15
Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQ 75
GG L +++ I RI +VG NG GKST+LK+ +G +P SG VF + R+ Q
Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQ 579
Query: 76 NP----DLSHFSTISQYIDDTIKDTIEAPYSPY--SLLKKFNLREQDRIENLSVGQTRCV 129
+ DLS S Y+ E + S NL Q + LS GQ V
Sbjct: 580 HHVDGLDLS--SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-MYTLSGGQKSRV 636
Query: 130 ALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHD 176
A K+ +P IL+LDEP+NHLD + + Q L+ ++ VSHD
Sbjct: 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHD 683
Score = 77.2 bits (190), Expect = 1e-14
Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 63/302 (20%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT----GKIKPDCGFI----------- 341
R ++ D S+ + +G G+VG NG GKTT L+ + I +C +
Sbjct: 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249
Query: 342 -----TLGTNLK--------IATIDQKREDIDPD---KSLASYLTGSSGDSLMVR----- 380
L T+++ + Q+RE K + G D++ R
Sbjct: 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIY 309
Query: 381 ----------GESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIM 430
E+R A + F P+ K SGG +MR +AR L + L++
Sbjct: 310 KRLELIDAYTAEAR-AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLL 368
Query: 431 DEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYA 490
DEPTN LD + +LE + + T ++VSH R+FL+ VT + + + Y
Sbjct: 369 DEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQK-----LVTYK 423
Query: 491 GGY-------SDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLE 543
G Y + L Q+K+ + ++ Q+ + K + ++ L S+ L+
Sbjct: 424 GDYDTFERTREEQLKNQQKAFESNERSRSHMQAF----IDKFRYNAKRASLVQSRIKALD 479
Query: 544 RL 545
RL
Sbjct: 480 RL 481
Score = 40.2 bits (94), Expect = 0.002
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAA 52
+ +++ S ++GG DL+ D +++ LVG NG+GK+T L+ A
Sbjct: 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA 224
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 103 bits (258), Expect = 1e-22
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
L +++ RL+V + G G++GPNG+GK+TLL+LL G ++PD G + L
Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61
Query: 344 GTNL----------KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDF 393
G +L ++A ++Q + P G + G+S H A +
Sbjct: 62 GVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA 121
Query: 394 LFHPDQAH---SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLE 446
L + +H M LSGGE+ R VAR LAQ L++DEPTN LD ETL +
Sbjct: 122 LARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV- 180
Query: 447 RTITQLQGTILIVSHD 462
R + T++ HD
Sbjct: 181 RELAATGVTVVAALHD 196
Score = 75.2 bits (185), Expect = 5e-14
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
LRL +S + GG ++ V ++ P L+G NGSGKSTLL++ AG P +G V L
Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61
Query: 66 SSSRLGYLEQNPDLSHFSTISQYIDD----TIKDTIEAPYSPYSLLKKFNLREQDRI--- 118
G L + + + Q D T++D + P+ L + +
Sbjct: 62 GVDLHG-LSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120
Query: 119 ---------------ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR 154
LS G+ + V + + L P +L+LDEPTNHLD R
Sbjct: 121 ALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 98.0 bits (244), Expect = 6e-21
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 14/191 (7%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
++ + K+Y D+LVV S + GEC G++GPNGAGKTT L++L G PD G I+L
Sbjct: 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66
Query: 344 ----------GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDF 393
++ + Q +++DPD ++ L + +R + + +F
Sbjct: 67 CGEPVPSRARHARQRVGVVPQ-FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEF 125
Query: 394 LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL-ERTITQL 452
++A + + LSGG K R +AR L + L++DEPT LD + + ER + L
Sbjct: 126 AKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185
Query: 453 QG--TILIVSH 461
TIL+ +H
Sbjct: 186 ARGKTILLTTH 196
Score = 72.1 bits (177), Expect = 4e-13
Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
MS+ + ++ G ++ + ++ E L+G NG+GK+T L++ G+T P +G
Sbjct: 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62
Query: 61 NVFL----------HSSSRLGYLEQ----NPDLS---HFSTISQYIDDTIKDTIEAPYSP 103
++ L H+ R+G + Q +PD + + +Y + A P
Sbjct: 63 SISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA-AARALVPP 121
Query: 104 YSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
K + ++ LS G R + L + L++ PD+L+LDEPT LD + H M + L
Sbjct: 122 LLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERL 181
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 97.6 bits (244), Expect = 8e-21
Identities = 70/209 (33%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
Query: 272 THLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLR-----IHYGECIGIVGPNGAGKTTL 326
+S + ++E +TK+ D FSL I+ GE IGIVGPNG GKTT
Sbjct: 328 ERPPRDESERETLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTF 381
Query: 327 LKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHV 386
KLL G +KPD G + LKI+ Q + D D ++ L S D L G S
Sbjct: 382 AKLLAGVLKPDEGEVD--PELKISYKPQYIKP-DYDGTVEDLL-RSITDDL---GSS--- 431
Query: 387 AGYIKDFLFHPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE-- 440
Y K + P Q L+ K LSGGE R +A L++ + ++DEP+ LD E
Sbjct: 432 --YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 489
Query: 441 --TLDFLERTITQLQGTILIVSHDRDFLD 467
+ R + + T L+V HD +D
Sbjct: 490 LAVAKAIRRIAEEREATALVVDHDIYMID 518
Score = 61.4 bits (150), Expect = 8e-10
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 21/169 (12%)
Query: 28 IKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF--LHSSSRLGYLEQNPDLSHFSTI 85
I E I +VG NG GK+T K+ AG+ +P G V L S + Y++ + D T+
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDG----TV 417
Query: 86 SQYIDDTIKDTIEAPYSPYSLLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILI 143
+ I D + + Y ++K L +++LS G+ + VA+ L D+ +
Sbjct: 418 EDLLRS-ITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL 476
Query: 144 LDEPTNHLDF-------RTI-HWMEQELLKINSALIFVSHDRRFLETLS 184
LDEP+ HLD + I E+ + + V HD ++ +S
Sbjct: 477 LDEPSAHLDVEQRLAVAKAIRRIAEER----EATALVVDHDIYMIDYIS 521
Score = 59.4 bits (145), Expect = 2e-09
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 41/188 (21%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTGKIKPDCG--------------FITLGTNL-------- 347
G+ GI+GPNG GKTT +K+L+G++ P+ G F GT L
Sbjct: 99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRF--RGTELQNYFKKLY 156
Query: 348 --KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSL-- 403
+I + K + +D + G + L + + R + + L + L
Sbjct: 157 NGEIKVV-HKPQYVD---LIPKVFKGKVRELLK-KVDERGKLDEVVERL---GLENILDR 208
Query: 404 -MKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD-FETLDFLERTITQLQG--TILIV 459
+ LSGGE R +A L + +F DEPT+ LD + L+ + R I +L +L+V
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLN-VARLIRELAEGKYVLVV 267
Query: 460 SHDRDFLD 467
HD LD
Sbjct: 268 EHDLAVLD 275
Score = 47.9 bits (115), Expect = 8e-06
Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 60/184 (32%)
Query: 36 LVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPD-------------LSHF 82
++G NG GK+T +KI +G P LG E+ P ++F
Sbjct: 104 ILGPNGIGKTTAVKILSGELIPN-----------LGDYEEEPSWDEVLKRFRGTELQNYF 152
Query: 83 STIS----------QYID-----------DTIKDTIEAPYSPYSLLKKFNLRE-QDR-IE 119
+ QY+D + +K E ++++ L DR I
Sbjct: 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDE-VVERLGLENILDRDIS 211
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLDF-------RTIHWMEQELLKINSALIF 172
LS G+ + VA+ L+ D DEPT++LD R I +EL + ++
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI----RELAE-GKYVLV 266
Query: 173 VSHD 176
V HD
Sbjct: 267 VEHD 270
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 96.5 bits (241), Expect = 2e-20
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 50/209 (23%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL--------HSS---SR 69
L +V L+I+P E++ ++G GSGKSTLLK+ G+ +P G+V L +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540
Query: 70 LGYLEQNPDLSHFSTISQYIDDTIKD--TIEAPY-SPYSLL----------------KKF 110
+GY+ Q+P L + T++D + APY +L
Sbjct: 541 IGYVPQDPRLFY---------GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGL 591
Query: 111 NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA- 169
+++ +R +LS GQ + VAL + L+ P IL+LDEPT+ +D R+ E+
Sbjct: 592 DMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS----EERFKDRLKRW 647
Query: 170 -----LIFVSHDRRFLETLSTTTVWLDRG 193
L+ V+H L+ L + +D G
Sbjct: 648 LAGKTLVLVTHRTSLLD-LVDRIIVMDNG 675
Score = 75.7 bits (187), Expect = 4e-14
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 46/215 (21%)
Query: 285 LEADKITKQY--DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+E ++ Y + + + SL I GE + I+G G+GK+TLLKLL G +P G +
Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523
Query: 343 LGTNLKIATID------------QK--------REDIDPDKSLASYLTGSSGDSLMVRG- 381
L + I ID Q R++I A D ++R
Sbjct: 524 LD-GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD-------DEEILRAA 575
Query: 382 ESRHVAGYIKDFLFHPD----QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDL 437
E V +++ HPD Q + LSGG++ +AR L + L++DEPT+ +
Sbjct: 576 ELAGVTEFVRR---HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632
Query: 438 DFET----LDFLERTITQLQG-TILIVSHDRDFLD 467
D + D L+R L G T+++V+H LD
Sbjct: 633 DNRSEERFKDRLKRW---LAGKTLVLVTHRTSLLD 664
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 88.1 bits (219), Expect = 6e-18
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 30/217 (13%)
Query: 284 VLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+LE + ++K Y + + +K+ +L I+ GE + I+GP+GAGK+TLL+ + ++P G I
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 343 L-GTNL-------------KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRG------- 381
L GT++ +I I Q I+ L + L G G R
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 382 ESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET 441
E + A + + D+A+ LSGG++ R +AR LAQ + ++ DEP LD +T
Sbjct: 121 EDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT 180
Query: 442 ----LDFLERTITQLQGTILIVSHD----RDFLDRTV 470
+D+L+R + T++I H + + DR V
Sbjct: 181 SKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV 217
Score = 67.3 bits (165), Expect = 1e-11
Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 31/193 (16%)
Query: 5 ILRLDHISATIG-GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+L ++++S G L+++ L+I P E + ++G +G+GKSTLL+ + EP SG++
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 64 LH--------------SSSRLGYLEQNPDLSHFSTISQYI-------DDTIKDTIEAPYS 102
L R+G + Q+ +L T+ + + T + ++ +S
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWR-SLLGRFS 119
Query: 103 P------YSLLKKFNLREQ--DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR 154
S L++ L ++ R + LS GQ + VA+ + L +PD+++ DEP LD +
Sbjct: 120 EEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179
Query: 155 TIHWMEQELLKIN 167
T + L +IN
Sbjct: 180 TSKQVMDYLKRIN 192
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 87.8 bits (218), Expect = 7e-18
Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 37/204 (18%)
Query: 3 LPILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
P L L +S G +L V L + P ER+ ++G +GSGKSTLL + G+ +P G
Sbjct: 332 KPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE 391
Query: 62 VFLHS----------SSRLGYLEQNPDLSHF-STISQYI--------DDTIKDTIE---- 98
V L R+ Q+ L F +T+ + D+ + +E
Sbjct: 392 VTLDGVSVSSLQDELRRRISVFAQDAHL--FDTTVRDNLRLGRPDATDEELWAALERVGL 449
Query: 99 APYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHW 158
A + SL + + LS G+ + +AL + L++ IL+LDEPT HLD T
Sbjct: 450 ADW-LRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT--- 505
Query: 159 MEQELLK-INSAL-----IFVSHD 176
E ELL+ + +AL + ++H
Sbjct: 506 -ESELLEDLLAALSGKTVVVITHH 528
Score = 84.4 bits (209), Expect = 7e-17
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 280 SGKLVLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC 338
GK LE ++ Y V+ SL + GE + I+GP+G+GK+TLL LLTG + P
Sbjct: 330 LGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389
Query: 339 GFITLGTNLKIATIDQKREDI-----DP---DKSLASYL----TGSSGDSLMVRGESRHV 386
G +TL + D+ R I D D ++ L ++ + L E +
Sbjct: 390 GEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGL 449
Query: 387 AGYIKDFLFHPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442
A +++ PD +++ LSGGE+ R +AR L L++DEPT LD T
Sbjct: 450 ADWLRSL---PDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506
Query: 443 DFLERTITQ-LQG-TILIVSHD 462
L + L G T+++++H
Sbjct: 507 SELLEDLLAALSGKTVVVITHH 528
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 84.5 bits (209), Expect = 8e-17
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 261 EQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNG 320
E+K S + + + S+ + ++ ++K Y D+ VV S + GEC G++GPNG
Sbjct: 20 ERKHQGISEAKASIPGSMST--VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNG 77
Query: 321 AGKTTLLKLLTGKIKPDCGFIT-LGTNL---------KIATIDQKREDIDPDKSLASYLT 370
AGK+T+ +++ G PD G IT LG + +I + Q +++D + ++ L
Sbjct: 78 AGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ-FDNLDLEFTVRENLL 136
Query: 371 GSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIM 430
M E V + +F +A + + LSGG K R +AR L LI+
Sbjct: 137 VFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196
Query: 431 DEPTNDLD-------FETLDFLERTITQLQGTILIVSH 461
DEPT LD +E L R++ TIL+ +H
Sbjct: 197 DEPTTGLDPHARHLIWERL----RSLLARGKTILLTTH 230
Score = 61.8 bits (150), Expect = 4e-10
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
MS + L +S + G ++ + ++ E L+G NG+GKST+ ++ G+T P +G
Sbjct: 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAG 96
Query: 61 NVFL----------HSSSRLGYLEQNPDLSHFSTI-------SQYIDDTIKDTIEAPYSP 103
+ + + +R+G + Q +L T+ +Y + ++ IEA
Sbjct: 97 KITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTRE-IEAVIPS 155
Query: 104 YSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
+ + R+ +LS G R + L + LI+ P +LILDEPT LD H + + L
Sbjct: 156 LLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 83.9 bits (208), Expect = 1e-16
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 37/198 (18%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH-------SSSRL 70
+L+ V LSI E + +VG +GSGKSTLL + G+ P SG V + SS+
Sbjct: 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNER 77
Query: 71 GYLEQNPDLSHFSTISQY----IDDTI------------KDTIEAPYSPYSLLKKFNLRE 114
L I Q+ D T K EA Y +L+K L
Sbjct: 78 AKLRN----KKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-- 131
Query: 115 QDRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS-- 168
+ RI + LS G+ + VA+ + L+++P +++ DEPT +LD + +L++N
Sbjct: 132 EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191
Query: 169 --ALIFVSHDRRFLETLS 184
+ + V+HD + L
Sbjct: 192 NTSFLVVTHDLELAKKLD 209
Score = 49.3 bits (118), Expect = 3e-06
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 284 VLEADKITKQYDDR----LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
+L+ + + K+Y + V+K SL I GE + IVG +G+GK+TLL LL G P G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 340 FITL 343
+
Sbjct: 61 EVLF 64
Score = 47.7 bits (114), Expect = 8e-06
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL---QGT-ILIVSHD 462
LSGGE+ R +AR L + ++ DEPT +LD + + +L T L+V+HD
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201
Query: 463 RDFLDRT 469
+ +
Sbjct: 202 LELAKKL 208
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 83.9 bits (208), Expect = 1e-16
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 283 LVLEADKITKQYDDR--LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
LE ++ Y R ++ S + GE + +VGP+GAGK+TLL LL G + P G
Sbjct: 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 341 ITL-GTNLKIATIDQKREDID--------PDKSLAS--YLTGSSGDSLMVRGESRHVAGY 389
I + G L A D R+ I ++A L +R + AG
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIR-RALERAG- 436
Query: 390 IKDFLFHPDQAHSLMKH---------LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
+ +F+ A LSGG+ R +AR + L++DEPT LD E
Sbjct: 437 LDEFV----AALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
Query: 441 TLDFLERTITQL-QG-TILIVSHDRDFL---DRTVT 471
T + + L QG T+L+V+H DR V
Sbjct: 493 TEALVTEALRALAQGRTVLLVTHRLALAERADRIVV 528
Score = 82.4 bits (204), Expect = 3e-16
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 37/211 (17%)
Query: 2 SLPILRLDHISATIGGIDL--LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
P L +S G L+ V ++ P ER+ LVG +G+GKSTLL + G +P
Sbjct: 317 PAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 60 GNVFL-----------HSSSRLGYLEQNPDLSHFS-TISQYI--------DDTIKDTIEA 99
G++ + ++ ++ Q+P L F+ TI++ I D I+ +E
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHPFL--FAGTIAENIRLARPDASDAEIRRALER 434
Query: 100 PYSPY---SLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTI 156
+L + + + LS GQ + +AL + + +L+LDEPT HLD T
Sbjct: 435 AGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET- 493
Query: 157 HWMEQELLKI------NSALIFVSHDRRFLE 181
E + + ++ V+H E
Sbjct: 494 ---EALVTEALRALAQGRTVLLVTHRLALAE 521
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 83.9 bits (208), Expect = 1e-16
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 20/196 (10%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L D I K++ +KD SL + GE + ++GP+G GKTTLL+++ G + G I G
Sbjct: 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64
Query: 345 TNLKIATIDQKRE------------DIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKD 392
QKR+ ++ ++A L R E + D
Sbjct: 65 GRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG----RAEVAERVAELLD 120
Query: 393 FLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL 452
+ P LSGG++ R +AR LA L++DEP + LD + L I QL
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 453 QG----TILIVSHDRD 464
Q T ++V+HD++
Sbjct: 181 QRRLGVTTIMVTHDQE 196
Score = 72.8 bits (179), Expect = 2e-13
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 53/211 (25%)
Query: 2 SLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
S P L +D+I G L+D+ LS+K E +CL+G +G GK+TLL+I AG+ +G
Sbjct: 1 SSPYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT 60
Query: 62 VFLHSS--SRL-------GYLEQN----PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLK 108
++ +RL G + Q+ P+L T+ D I Y L
Sbjct: 61 IYQGGRDITRLPPQKRDYGIVFQSYALFPNL------------TVADNIA-----YGLKN 103
Query: 109 KFNLREQ--DRIE-----------------NLSVGQTRCVALMKMLISRPDILILDEPTN 149
+ R + +R+ LS GQ + VAL + L + P +L+LDEP +
Sbjct: 104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163
Query: 150 HLDFRTIHWMEQELLKINSAL----IFVSHD 176
LD R + E+ ++ L I V+HD
Sbjct: 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 83.2 bits (206), Expect = 2e-16
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL------ 347
V+K + GE + ++G NGAGK+TLL L G ++P G + + G L
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 348 ------KIATIDQKRED------IDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF 395
++ + Q +D +D D + G S + R A
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGL-- 120
Query: 396 HPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--Q 453
LSGGEK R +A +A + L++DEPT LD + + + +L +
Sbjct: 121 ----RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 454 GTILIVS-HDRD 464
G +++S HD D
Sbjct: 177 GMTVVISTHDVD 188
Score = 80.2 bits (198), Expect = 2e-15
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 31/188 (16%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL------HSSS- 68
GG ++L+ + + + E + L+G NG+GKSTLL G+ PQSG V + +S
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 69 ------RLGYLEQNPDLSHFS-TISQYI----------DDTIKDTIEAPYSPYSLLKKFN 111
R+G + Q+PD F+ + Q + + ++ + + +
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR---EALTAVGASG 119
Query: 112 LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA-- 169
LRE+ LS G+ + VA+ + RPD+L+LDEPT LD M L ++ +
Sbjct: 120 LRERP-THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGM 178
Query: 170 -LIFVSHD 176
++ +HD
Sbjct: 179 TVVISTHD 186
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 83.0 bits (206), Expect = 2e-16
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 32/163 (19%)
Query: 11 ISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRL 70
++ GG L + ++ E + L G NGSGK+TLL++ AG+ P +G + L
Sbjct: 8 LACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD----- 62
Query: 71 GYLEQNPDLSHFSTISQYI--DDTIKDTI--------------EAPYSPYSLLKKFNLRE 114
+ D + Y+ + +K + + L+ L
Sbjct: 63 ---GGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL-- 117
Query: 115 QDRIEN-----LSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+ + LS GQ R VAL ++L+S I ILDEPT LD
Sbjct: 118 -APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159
Score = 67.2 bits (165), Expect = 1e-11
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 28/195 (14%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+LE + + R++ S + GE + + GPNG+GKTTLL+L+ G + P G I L
Sbjct: 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61
Query: 344 GTNLKIATIDQKREDIDPDKSLAS-YLTGSSG--DSLMVR-----------GESRHVAGY 389
+ DPD + A YL + +L V GE +A
Sbjct: 62 ----------DGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAA 111
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
++ P AH +LS G+K R +AR+L I+DEPT LD + I
Sbjct: 112 LEAVGLAP-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
Query: 450 -TQLQ--GTILIVSH 461
L G ++ +H
Sbjct: 171 RAHLAQGGIVIAATH 185
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 82.7 bits (204), Expect = 3e-16
Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+ ++ ++K Y D++VV D S I GEC G++GPNGAGK+T+ ++L G I PD G IT
Sbjct: 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 343 -LG---------TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKD 392
LG + I + Q +++DP+ ++ L M E V + +
Sbjct: 63 VLGEPVPSRARLARVAIGVVPQ-FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLE 121
Query: 393 FLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD-------FETLDFL 445
F +A + LSGG K R +AR L LI+DEPT LD +E L
Sbjct: 122 FARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL--- 178
Query: 446 ERTITQLQGTILIVSHDRDFLDR 468
R++ TIL+ +H + +R
Sbjct: 179 -RSLLARGKTILLTTHFMEEAER 200
Score = 58.0 bits (140), Expect = 7e-09
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 21/207 (10%)
Query: 8 LDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL--- 64
L +S + G ++ D+ +I E L+G NG+GKST+ ++ G+ P G + +
Sbjct: 7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE 66
Query: 65 -------HSSSRLGYLEQNPDLSHFSTISQ-------YIDDTIKDTIEAPYSPYSLLKKF 110
+ +G + Q +L T+ + Y + + IEA +
Sbjct: 67 PVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR-EIEAVIPSLLEFARL 125
Query: 111 NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH--WME-QELLKIN 167
+ R+ LS G R + L + LI+ P +LILDEPT LD H W + LL
Sbjct: 126 ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185
Query: 168 SALIFVSHDRRFLETLSTTTVWLDRGC 194
++ +H E L L+ G
Sbjct: 186 KTILLTTHFMEEAERLCDRLCVLESGR 212
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 82.6 bits (204), Expect = 3e-16
Identities = 54/201 (26%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG----TNLKIATIDQ 354
V+ L + G +G+VGPNGAGKTTLL+ + G + P G + + L +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 355 KREDIDPDKSLASYLTG-----------------------SSGDSLMVRGESRHVAGYIK 391
+ + D SL+ ++ + M R A
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA---- 133
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLER 447
D+ + LSGGE+ R ++AR LAQ L++DEPT LD TL+ L R
Sbjct: 134 ------DRP---VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE-LVR 183
Query: 448 TITQLQGTILIVSHDRDFLDR 468
+ T + HD D R
Sbjct: 184 RLVDDGKTAVAAIHDLDLAAR 204
Score = 57.2 bits (138), Expect = 1e-08
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 44/207 (21%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P++ + +S G +L V LS++ + LVG NG+GK+TLL+ G P +G V
Sbjct: 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 64 L-----HSSS------RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN- 111
+ + S R+ + Q+ LS + ++ +E +P+ +F+
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLS--------FEFDVRQVVEMGRTPH--RSRFDT 111
Query: 112 LREQDR-------------------IENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
E DR + +LS G+ + V L + L +L+LDEPT LD
Sbjct: 112 WTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
Query: 153 F-RTIHWME--QELLKINSALIFVSHD 176
+ +E + L+ + HD
Sbjct: 172 INHQVRTLELVRRLVDDGKTAVAAIHD 198
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 80.4 bits (199), Expect = 1e-15
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 19/204 (9%)
Query: 284 VLEADKITKQYD-DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
++E ++K Y + D SL I GE + + GP+GAGKTTLLKLL G + P G +
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 343 L-GTNL------KIATIDQKREDIDPDKSLASYLT--GSSGDSLMVRG----ESRHVAGY 389
+ G ++ ++ + ++ + D L T + L VRG E + G
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFL 445
+ +A + + LSGGE+ R +AR + L+ DEPT +LD + LD L
Sbjct: 121 ALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL 180
Query: 446 ERTITQLQGTILIVSHDRDFLDRT 469
+R + + T+++ +HD +DR
Sbjct: 181 KR-LNKRGTTVIVATHDLSLVDRV 203
Score = 69.2 bits (170), Expect = 3e-12
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 5 ILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
++ ++S GG+ L DV L I+ E + L G +G+GK+TLLK+ G P G V
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 64 L-------HSSSRLGYLEQN-----------PDLSHFSTISQYIDDTIKDTIEAPYSPYS 105
+ +L L + PD + + ++ ++ K E +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 106 LLKKFNLREQDRI--ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT---IHWME 160
L++ L + E LS G+ + VA+ + +++ P +L+ DEPT +LD I +
Sbjct: 121 ALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL 180
Query: 161 QELLKINSALIFVSHDRRFLETLSTTTVWLDRG 193
+ L K + +I +HD ++ ++ + LD G
Sbjct: 181 KRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 80.2 bits (199), Expect = 1e-15
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+LEA ++ + R ++ D SL + GE + I+GPNGAGK+TLL+ L+G++ PD G + L
Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 344 G 344
Sbjct: 62 N 62
Score = 65.2 bits (160), Expect = 4e-11
Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 59/216 (27%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+L ++S +GG LL DV L+++P E + ++G NG+GKSTLL+ +G P SG V
Sbjct: 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
Query: 64 LH-----------SSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNL 112
L+ + R L Q+ LS F T+++ + +P+ L +
Sbjct: 61 LNGRPLADWSPAELARRRAVLPQHSSLS-FPF-------TVEEVVAMGRAPHGLSRA--- 109
Query: 113 REQDRIEN-----------------LSVG-QTRCVALMKML--ISRPD----ILILDEPT 148
+ + LS G Q R V L ++L + PD L+LDEPT
Sbjct: 110 EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQR-VQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 149 NHLDFRTIHWMEQELLKI--------NSALIFVSHD 176
+ LD H + +L++ A+I V HD
Sbjct: 169 SALDLA--H--QHHVLRLARQLAHERGLAVIVVLHD 200
Score = 46.3 bits (111), Expect = 2e-05
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQ------PFNFLIMDEPTNDLDF----ETLDFLERTI 449
A LSGGE+ R +ARVLAQ P +L++DEPT+ LD L +
Sbjct: 128 AGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA 187
Query: 450 TQLQGTILIVSHD 462
+ +++V HD
Sbjct: 188 HERGLAVIVVLHD 200
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 80.0 bits (197), Expect = 2e-15
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 35/211 (16%)
Query: 278 QSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD 337
+ G + ++ ++ Y V+ D SL I GE + ++G +G GKTTLL+ + G +K
Sbjct: 1 GACGGIRIDHLRV--AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA 58
Query: 338 CGFITLGTNLKIATIDQKREDIDPDK----------SLASYLTGSSGDSLMVRGE----- 382
G +IA D+ P K +L +L + +R +
Sbjct: 59 ------GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKA 112
Query: 383 --SRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD-- 438
+ VA +K + D A L LSGG + R +AR +A + L++DEP + LD
Sbjct: 113 DIAERVADALK-LVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN 171
Query: 439 -----FETLDFLERTITQLQGTILIVSHDRD 464
E + L + +L TIL V+HD+D
Sbjct: 172 IRANMREEIAALHEELPEL--TILCVTHDQD 200
Score = 73.9 bits (181), Expect = 1e-13
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+R+DH+ G +L D+ L I+ E + L+G +G GK+TLL+ AG + +
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65
Query: 66 SSSR-----------LGYLEQNPDL-SHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLR 113
+ R L L QN L H ++D + + A P + + R
Sbjct: 66 IADRDLTHAPPHKRGLALLFQNYALFPHLK-----VEDNVAFGLRAQKMPKADI---AER 117
Query: 114 EQDRIE-------------NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME 160
D ++ LS G + +A+ + + PD+L+LDEP + LD M
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177
Query: 161 QELLKINSAL-----IFVSHDR 177
+E+ ++ L + V+HD+
Sbjct: 178 EEIAALHEELPELTILCVTHDQ 199
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 79.4 bits (196), Expect = 2e-15
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 16/182 (8%)
Query: 288 DKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNL 347
+ ++ + R V+ D SL + G+ + ++GPNGAGK+TL++++ G + PD G I L
Sbjct: 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL 67
Query: 348 KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSL---M 404
+I + QK +D L + L +R ++ I L H + M
Sbjct: 68 RIGYVPQKLY-LDTTLPL------TVNRFLRLRPGTK--KEDILPALKRVQAGHLIDAPM 118
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVS 460
+ LSGGE R ++AR L L++DEPT +D D +++ +L +L+VS
Sbjct: 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178
Query: 461 HD 462
HD
Sbjct: 179 HD 180
Score = 77.5 bits (191), Expect = 1e-14
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 37/194 (19%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
++ L+++S + G +L DV L +KP + + L+G NG+GKSTL+++ G+ P G +
Sbjct: 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK 62
Query: 64 LHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIE-----------APYSPYSLLKKFN- 111
+ R+GY+ Q Y+D T+ T+ P LK+
Sbjct: 63 RNGKLRIGYVPQK----------LYLDTTLPLTVNRFLRLRPGTKKEDILP--ALKRVQA 110
Query: 112 --LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD-------FRTIHWMEQE 162
L + ++ LS G+T+ V L + L++RP +L+LDEPT +D + I + +E
Sbjct: 111 GHLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169
Query: 163 LLKINSALIFVSHD 176
L + A++ VSHD
Sbjct: 170 L---DCAVLMVSHD 180
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 78.6 bits (194), Expect = 5e-15
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L + ++K+Y +R V+ L I G+ + +VG +G GK+TLL+LL G P G + G
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 345 TNLKIATIDQKREDID---PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAH 401
T A + + RED D L + L ++G+ R A + D+A+
Sbjct: 73 T----APLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN 128
Query: 402 SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTIL 457
LSGG+K R +AR L L++DEP LD E D +E Q T+L
Sbjct: 129 EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVL 188
Query: 458 IVSHD 462
+V+HD
Sbjct: 189 LVTHD 193
Score = 52.8 bits (127), Expect = 3e-07
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 38/178 (21%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L L+ +S G +L + L I + + +VG +G GKSTLL++ AG+ P +G +
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL--- 69
Query: 66 SSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPY-------SLLKKFNLREQ--- 115
L+ + +++ +DT +A P+ L K R+
Sbjct: 70 -------------LAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ 116
Query: 116 --------DRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ 161
DR LS GQ + VAL + LI RP +L+LDEP LD T M+
Sbjct: 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD 174
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 78.1 bits (193), Expect = 6e-15
Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 29/204 (14%)
Query: 284 VLEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
++ + I+ +Y D +KD S ++ GE + IVG NG+GK+TL KLL G + P+ G I
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 342 TL-GTNLKIATIDQKREDI-----DPDKS---------LASYL--TGSSGDSLMVRGESR 384
T+ G L T+ R + +PD +A L G + ++ R +
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 385 HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FE 440
++DFL + H LSGG+K R +A VLA + +I+DE T+ LD E
Sbjct: 125 LRQVGMEDFLNR--EPH----RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178
Query: 441 TLDFLERTITQLQGTILIVSHDRD 464
L+ + + Q T+L ++HD D
Sbjct: 179 VLETVRQLKEQKGITVLSITHDLD 202
Score = 73.1 bits (180), Expect = 2e-13
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 50/213 (23%)
Query: 1 MSLPILRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ 58
M I+R++HIS L+DV S+ E + +VG NGSGKSTL K+ G+ P+
Sbjct: 1 MKEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60
Query: 59 SGNVFLHS-----------SSRLGYLEQNPDLSHFSTISQYIDDTIKDTI----EAPYSP 103
+G + + ++G + QNPD +Q++ T++D + E P
Sbjct: 61 AGTITVGGMVLSEETVWDVRRQVGMVFQNPD-------NQFVGATVQDDVAFGLENIGVP 113
Query: 104 YSLLKK-------------FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNH 150
+ + F RE R LS GQ + VA+ +L +PDI+ILDE T+
Sbjct: 114 REEMVERVDQALRQVGMEDFLNREPHR---LSGGQKQRVAIAGVLALQPDIIILDEATSM 170
Query: 151 LDFR-------TIHWMEQELLKINSALIFVSHD 176
LD R T+ ++++ ++ ++HD
Sbjct: 171 LDPRGRREVLETVRQLKEQK---GITVLSITHD 200
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 77.6 bits (192), Expect = 9e-15
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 39/219 (17%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
PIL L+ +S + G L D+ L + P E ++G NG+GK+T++ + G T P G+V
Sbjct: 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60
Query: 64 LHSSSRLGYLEQNPDLSH------FSTISQYIDDTIKDTIE----APYSPYSLL-KKFNL 112
+ G E ++ F + + + T+ + +E S ++ L + +
Sbjct: 61 FGGTDLTGLPE--HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSA 118
Query: 113 REQDRIE-----------------NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
E+DRIE LS GQ + + + +L+ P +L+LDEP + T
Sbjct: 119 EEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---T 175
Query: 156 IHWMEQ--ELLKI---NSALIFVSHDRRFLETLSTT-TV 188
E+ ELLK +++ V HD F+ +++ TV
Sbjct: 176 DEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTV 214
Score = 75.7 bits (187), Expect = 3e-14
Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 46/223 (20%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+L + ++ +D + D SL + GE I+GPNGAGKTT++ ++TGK +PD G +
Sbjct: 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61
Query: 344 -GTNL------KIAT--IDQK------------REDID----PDKS-LASYLTGSSGDSL 377
GT+L +IA I +K E+++ DKS AS S +
Sbjct: 62 GGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAE-- 119
Query: 378 MVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDL 437
+ V I L D+A L LS G+K + +L Q L++DEP +
Sbjct: 120 -EKDRIEEVLETI--GL--ADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
Query: 438 -DFETLDFLERT---ITQLQG--TILIVSHDRDF---LDRTVT 471
D ET E+T + L G ++++V HD +F + VT
Sbjct: 175 TDEET----EKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVT 213
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 77.2 bits (190), Expect = 1e-14
Identities = 60/206 (29%), Positives = 90/206 (43%), Gaps = 32/206 (15%)
Query: 305 LRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG------TNLKIATIDQKRE- 357
L GE +G++GPNGAGKTTLL+ + G I P G + + I + Q+ E
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 358 ----DIDPDKSLASYLTGSSGDSLMVR-GESRHVAGYIKDFLFHPDQAH---SLMKHLSG 409
I ++ S TG G + R + A ++D L + LSG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIG--WLRRPCVADFAA--VRDALRRVGLTELADRPVGELSG 116
Query: 410 GEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG---TILIVSHDRD-- 464
G++ R +VAR LA + L++DEP LD T + L +L G IL+ +HD
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176
Query: 465 --------FLDRTVTSTIAAQNIEDP 482
L+ V + Q ++DP
Sbjct: 177 MATCDRVVLLNGRVIADGTPQQLQDP 202
Score = 56.0 bits (135), Expect = 3e-08
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 37/180 (20%)
Query: 26 LSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS------RLGYLEQNPDL 79
LS E + L+G NG+GK+TLL+ G+ P G V + +S +GY+ Q +
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 80 SHFSTISQY------------------IDDTIKDTIEAPYSPYSLLKKFNLRE-QDR-IE 119
+ IS + D +A L++ L E DR +
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA-VRDA-------LRRVGLTELADRPVG 112
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME---QELLKINSALIFVSHD 176
LS GQ + V + + L +RP +L+LDEP LD T + EL +A++ +HD
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 76.7 bits (189), Expect = 2e-14
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 43/205 (20%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L+L ++ G +L ++ S++ E + G +G GKSTLLKI A + P SG +
Sbjct: 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65
Query: 64 LHSS-----------SRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPY-------SPYS 105
++ Y Q P L DT+ D + P+ P
Sbjct: 66 FEGEDISTLKPEIYRQQVSYCAQTPTL---------FGDTVYDNLIFPWQIRNQQPDPAI 116
Query: 106 L---LKKFNLRE---QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD------- 152
L++F L + I LS G+ + ++L++ L P +L+LDE T+ LD
Sbjct: 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
Query: 153 FRTIHWMEQELLKINSALIFVSHDR 177
IH +E N A+++V+HD+
Sbjct: 177 NEIIHRYVREQ---NIAVLWVTHDK 198
Score = 53.6 bits (129), Expect = 1e-07
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 12/195 (6%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
+L+ + D ++ + S + GE I GP+G GK+TLLK++ I P G +
Sbjct: 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 342 TL-GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQ- 399
G ++ + R+ + + + D+L+ + R+ FL ++
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERF 124
Query: 400 ---AHSLMKH---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL----DFLERTI 449
L K+ LSGGEK R + R L L++DE T+ LD + + R +
Sbjct: 125 ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184
Query: 450 TQLQGTILIVSHDRD 464
+ +L V+HD+D
Sbjct: 185 REQNIAVLWVTHDKD 199
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 76.5 bits (189), Expect = 2e-14
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 281 GKL--VLEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
GKL +E D++T +Y L++ D SL+I GE + IVGP+G+GK+TLL+LL G P
Sbjct: 446 GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505
Query: 337 DCGFITL-GTNLKIATIDQKRED---------IDPDKSLASYLTGSSGDSLMVRGESRHV 386
+ G + G +L + R + S+ + G + +L E+ +
Sbjct: 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARM 564
Query: 387 AGYIKDFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442
AG +D P H+++ LSGG++ R ++AR L + L+ DE T+ LD T
Sbjct: 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624
Query: 443 DFLERTITQLQGTILIVSH 461
+ ++ +L+ T ++++H
Sbjct: 625 AIVSESLERLKVTRIVIAH 643
Score = 67.3 bits (165), Expect = 1e-11
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 48/196 (24%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS-----------SR 69
L DV L I+P E + +VG +GSGKSTLL++ G P+SG+VF +
Sbjct: 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528
Query: 70 LGYLEQNPDLSHFSTISQYIDDTIKDTI--EAPYSP---YSLLKKFNLREQDRIE----- 119
LG + QN + + +I + I AP + + + L +D I
Sbjct: 529 LGVVLQN---------GRLMSGSIFENIAGGAPLTLDEAWEAARMAGL-AED-IRAMPMG 577
Query: 120 ----------NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA 169
LS GQ + + + + L+ +P IL+ DE T+ LD RT + + L ++
Sbjct: 578 MHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVT 637
Query: 170 LIFVSHDRRFLETLST 185
I ++H R LST
Sbjct: 638 RIVIAH-R-----LST 647
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 76.5 bits (189), Expect = 2e-14
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 31/207 (14%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
L +TK Y R +D S ++ GE +GIVG +G+GKTTLL L+ ++ PD G +
Sbjct: 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR 66
Query: 344 ---GTNLKIATIDQK------REDI-----DPDKSLASYLT--GSSGDSLMVRGESRHVA 387
G + + + R + P L ++ G+ G+ LM G RH
Sbjct: 67 MRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHY- 124
Query: 388 GYIK----DFLFH----PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF 439
G I+ D+L + L SGG + R +AR L + MDEPT LD
Sbjct: 125 GDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDV 184
Query: 440 ET----LDFLERTITQLQGTILIVSHD 462
LD L + +L ++IV+HD
Sbjct: 185 SVQARLLDLLRGLVRELGLAVVIVTHD 211
Score = 54.2 bits (131), Expect = 9e-08
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
M P+L + ++ G +DV + P E + +VG +GSGK+TLL + P +G
Sbjct: 2 MDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61
Query: 61 NV 62
V
Sbjct: 62 EV 63
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 76.0 bits (187), Expect = 2e-14
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 36/207 (17%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
M+ P + + I + G + L+ V L++ P E L+G NG+GKSTL+K+ +GI EP G
Sbjct: 1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG 60
Query: 61 NVFLHSSSRLGYLEQNPDLSH---FSTISQ---YIDD------------TIKDTIEAPYS 102
+ +++ + Y + + L+ I Q ID+ K
Sbjct: 61 TITINNIN---YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNII 117
Query: 103 PYS--------LLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+ +L + L+ +++ NLS+ + + + K L+ ++I+DEPT+ L
Sbjct: 118 DWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177
Query: 153 FRTIHW----MEQELLKINSALIFVSH 175
+ + + M Q L K +A++++SH
Sbjct: 178 NKEVDYLFLIMNQ-LRKEGTAIVYISH 203
Score = 62.1 bits (151), Expect = 3e-10
Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT-- 342
+ I K + +K +L ++ GE ++G NGAGK+TL+K+L+G +P G IT
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 343 ----------LGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGY-IK 391
L L I I Q+ ID L + G R ++ V G I
Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG--------RHLTKKVCGVNII 117
Query: 392 DFLFHPDQAHSLMK-------------HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
D+ +A ++ +LS K +A+ L +IMDEPT+ L
Sbjct: 118 DWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177
Query: 439 FETLDFLERTITQLQG---TILIVSH 461
+ +D+L + QL+ I+ +SH
Sbjct: 178 NKEVDYLFLIMNQLRKEGTAIVYISH 203
Score = 43.6 bits (103), Expect = 1e-04
Identities = 55/229 (24%), Positives = 87/229 (37%), Gaps = 63/229 (27%)
Query: 276 TTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIK 335
+ + + V E +T + DR V+D S + GE +G G G+G+T L+ L G K
Sbjct: 257 VSNLAHETVFEVRNVTSR--DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK 314
Query: 336 PDCGFITL-GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDF- 393
G I L G ++ R +D K +Y+T ESR G+ +F
Sbjct: 315 RAGGEIRLNGKDISP------RSPLDAVKKGMAYIT-----------ESRRDNGFFPNFS 357
Query: 394 ---------------------LFHP-------DQAHSLMK-----------HLSGGEKMR 414
LFH + L+ LSGG + +
Sbjct: 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQK 417
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QG-TILIVS 460
++++ L +I DEPT +D + + + QL G IL+VS
Sbjct: 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS 466
Score = 30.1 bits (68), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
I LS G + V + K L P+++I DEPT +D
Sbjct: 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGID 441
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 75.9 bits (187), Expect = 3e-14
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E + K++ + V+ L + GE + I+GP+G+GKTTLL+ + +P+ G I +G
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSG--------------------DSLMVRGESR 384
TID R + K L L G ++V+GE +
Sbjct: 64 D----ITIDTARS-LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK 118
Query: 385 HVAGYIKDFLFH----PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
A L + S + LSGG++ R +AR LA ++ DEPT+ LD E
Sbjct: 119 EEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE 178
Query: 441 TLDFLERTITQL---QGTILIVSHD----RDFLDRTV 470
+ + TI QL + T++IV+H+ RD DR +
Sbjct: 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI 215
Score = 54.4 bits (131), Expect = 9e-08
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 45/220 (20%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG-----NVFLHSSSRL- 70
GIDL +KP E + ++G +GSGK+TLL+ + +P++G ++ + ++ L
Sbjct: 21 GIDL------EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74
Query: 71 -------------GYLEQNPDL-SHFSTISQYIDDTI----KDTIEAPYSPYSLLKKFNL 112
G++ QN +L H + + I+ + + EA LL K L
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL 134
Query: 113 --REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD-------FRTIHWMEQEL 163
+E LS GQ + VA+ + L RP++++ DEPT+ LD TI + QE
Sbjct: 135 AGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE- 193
Query: 164 LKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFA 203
++ V+H+ F ++ +++D+G + ++QG A
Sbjct: 194 ---KRTMVIVTHEMSFARDVADRAIFMDQGRI--VEQGPA 228
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 75.5 bits (186), Expect = 3e-14
Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 24/194 (12%)
Query: 6 LRLDHISATIG-GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+ ++ +S + G G ++L D+ L+IK + +VG +GSGKSTL K+ G + +SG + L
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 65 HSSS-----------RLGYLEQNPDLSHFSTISQYI----DDTIKDTIEAPYSPYSL--- 106
+ S + YL Q P + S + + ++ +D I A +
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDD 593
Query: 107 LKKFNLREQDRIE----NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162
++ L Q + ++S GQ + +AL + L++ +LILDE T++LD T +
Sbjct: 594 IENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN 653
Query: 163 LLKIN-SALIFVSH 175
LL + +IFV+H
Sbjct: 654 LLNLQDKTIIFVAH 667
Score = 67.1 bits (164), Expect = 1e-11
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 19/195 (9%)
Query: 285 LEADKITKQYD-DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+ + ++ Y ++ D SL I IVG +G+GK+TL KLL G + G I L
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 344 -GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVA----------GYIKD 392
G +LK R+ I+ +GS ++L++ G +V+ IKD
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL-GAKENVSQDEIWAACEIAEIKD 592
Query: 393 FLFHPDQAH--SLMKH---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
+ + + L + +SGG+K R +AR L LI+DE T++LD T +
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652
Query: 448 TITQLQ-GTILIVSH 461
+ LQ TI+ V+H
Sbjct: 653 NLLNLQDKTIIFVAH 667
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 75.4 bits (186), Expect = 4e-14
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-----------HSSS 68
L++V I E + ++G NGSGKST+ KI G+ +PQSG + +
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83
Query: 69 RLGYLEQNPDLSHFSTISQYIDDTIKDTI------------EAPYSPYSLLKKFNLREQD 116
++G + QNPD +Q+I T++D I + L KK + +
Sbjct: 84 KIGIIFQNPD-------NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL 136
Query: 117 RIE--NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NSAL 170
E NLS GQ + VA+ +L P+I+I DE T+ LD + +++ ++ + L
Sbjct: 137 DKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTL 196
Query: 171 IFVSHD 176
I ++HD
Sbjct: 197 ISITHD 202
Score = 61.9 bits (151), Expect = 4e-10
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 23/189 (12%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATID 353
+ +K+ S I+ GE + I+G NG+GK+T+ K+LTG +KP G I + G + +
Sbjct: 20 SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLK 79
Query: 354 QKREDI-----DPDKSLASYLTGSSGD-----SLMVRGESRHVAGYIKDFLFHPDQAHSL 403
+ R+ I +PD + G++ + L + I D L
Sbjct: 80 EIRKKIGIIFQNPD----NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY 135
Query: 404 MKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----T 455
+ LSGG+K R +A VLA +I DE T+ LD + +++ + L+ T
Sbjct: 136 LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKT 195
Query: 456 ILIVSHDRD 464
++ ++HD D
Sbjct: 196 LISITHDMD 204
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 74.9 bits (184), Expect = 6e-14
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 42/223 (18%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
L A + K Y R VV+D SL ++ GE +G++GPNGAGKTT ++ G + D G I
Sbjct: 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-- 60
Query: 344 GTNLKIATIDQKREDIDPDKSLASYLTG------------SSGDSLMVRGESRHVAGYIK 391
ID + + P + A G S D+LM + R +
Sbjct: 61 -------IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ 113
Query: 392 DFLFHPDQAHSLMKH-------------LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
D+A+ LM+ LSGGE+ R +AR LA F+++DEP +D
Sbjct: 114 ----REDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
Query: 439 FETLDFLERTITQLQGT---ILIVSHD-RDFLDRTVTSTIAAQ 477
++ ++R I L+ + +LI H+ R+ L + I +Q
Sbjct: 170 PISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQ 212
Score = 49.1 bits (117), Expect = 3e-06
Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 23/171 (13%)
Query: 3 LPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
+ L +++ G +++DV L++ E + L+G NG+GK+T + GI +GN+
Sbjct: 1 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 63 F----------LHSSSR--LGYLEQNPD----LSHFSTISQYIDDTIKDTIEAPYS---P 103
LH+ +R +GYL Q LS + + + I+D + A
Sbjct: 61 IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ--IRDDLSAEQREDRA 118
Query: 104 YSLLKKFNLRE-QDRI-ENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
L+++F++ +D + ++LS G+ R V + + L + P ++LDEP +D
Sbjct: 119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 74.6 bits (184), Expect = 6e-14
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 8 LDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL--- 64
L +IS G +L D+ L+I+ + ++G +GSGKSTLL I + + SG V+L
Sbjct: 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60
Query: 65 -----HSS-------SRLGYLEQNPDLSHFSTISQ-------YIDDTIKDTIEAPYSPYS 105
+S +LGYL QN L T+ + Y + K+ E
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREK---KKE 117
Query: 106 LLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
L+K L + + +I LS G+ + VAL + ++ P +++ DEPT LD + + L
Sbjct: 118 ALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 164 LKINSA---LIFVSHD 176
L++N +I V+HD
Sbjct: 178 LELNDEGKTIIIVTHD 193
Score = 72.6 bits (179), Expect = 2e-13
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 37/200 (18%)
Query: 290 ITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLK 348
I+K++ D++++ D +L I G+ I+G +G+GK+TLL ++ K D G + L G
Sbjct: 4 ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63
Query: 349 IATIDQKR-------------------EDIDPDKSLA---SYLTGSSGDSLMVRG-ESRH 385
+ E ++ + L L+ E
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 386 VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL 445
+ +K ++ LSGGE+ R +AR + + ++ DEPT LD + D +
Sbjct: 124 LNLKLKQKIY----------ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEV 173
Query: 446 ERTITQL--QG-TILIVSHD 462
+ +L +G TI+IV+HD
Sbjct: 174 LDLLLELNDEGKTIIIVTHD 193
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 74.5 bits (183), Expect = 8e-14
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF--------LHSSSR- 69
D+L +V SI E + +VG +GSGKSTLL + G+ P SG+V L S+++
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82
Query: 70 ------LGYLEQN----PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNL--REQDR 117
LG++ Q PD + ++ + K E +L L R R
Sbjct: 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR 142
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKIN----SALIFV 173
LS G+ + VA+ + L++ P +++ DEPT +LD R + Q L ++N +A + V
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVV 202
Query: 174 SHDRRFLETLS 184
+HD + + +S
Sbjct: 203 THDLQLAKRMS 213
Score = 44.0 bits (104), Expect = 1e-04
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL---QGT-ILIVSHD 462
LSGGE+ R +AR L ++ DEPT +LD D + + + +L QGT L+V+HD
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
Query: 463 RDFLDR 468
R
Sbjct: 206 LQLAKR 211
Score = 42.1 bits (99), Expect = 4e-04
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 280 SGKLVLEADKITKQYDD----RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIK 335
K++L+ D + K+Y + V+ + S I GE + IVG +G+GK+TLL LL G
Sbjct: 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60
Query: 336 PDCG 339
P G
Sbjct: 61 PTSG 64
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 73.9 bits (182), Expect = 1e-13
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 48/211 (22%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG--NVF---LHSSS------- 68
L D+ L I P E + L G +GSGK+TLL + G+ Q G V L+ +S
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 69 --RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLRE------------ 114
+GY+ Q +L F T Q ++ +E L + +E
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQ----NVQMALE-------LQPNLSYQEARERARAMLEAV 129
Query: 115 --QDRI----ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT----IHWMEQELL 164
D + NLS GQ + VA+ + L+ RP +++ DEPT LD ++ + M++
Sbjct: 130 GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 165 KINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
+ ++ V+HD R L+ ++ V ++ G L
Sbjct: 190 EQGCTILIVTHDNRILD-VADRIVHMEDGKL 219
Score = 56.2 bits (136), Expect = 3e-08
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT-LGTNLKIAT---I 352
+ V+ D +L I+ GE + + GP+G+GKTTLL L+ G G + LG L A+ +
Sbjct: 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77
Query: 353 DQKREDID---PDKSLASYLTGSSGDSL-------MVRGESRHVAGYIKDFLFHPDQAHS 402
Q R +I +L +LT + + E+R A + + + D
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY 137
Query: 403 LMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET-LDFLE--RTITQLQG-TILI 458
+LSGG+K R +AR L ++ DEPT LD ++ D +E + + + QG TILI
Sbjct: 138 YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197
Query: 459 VSHDRDFLD 467
V+HD LD
Sbjct: 198 VTHDNRILD 206
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 73.7 bits (181), Expect = 1e-13
Identities = 66/239 (27%), Positives = 102/239 (42%), Gaps = 41/239 (17%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+L+ ++K Y +D S ++ GE +GIVG +G+GK+TLL L G++ PD G T
Sbjct: 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 344 ----GTNLKIATIDQKREDI-----------DPDKSLASYLT--GSSGDSLMVRGESRH- 385
G L++ + + +P L ++ + G+ LM G RH
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGA-RHY 121
Query: 386 --VAGYIKDFL----FHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF 439
+ D+L P + L + SGG + R +AR L + MDEPT LD
Sbjct: 122 GNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181
Query: 440 ET----LDFLERTITQLQGTILIVSHD----RDFLDRT--------VTSTIAAQNIEDP 482
LD L + L ++IV+HD R R V S + Q ++DP
Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDP 240
Score = 61.4 bits (149), Expect = 6e-10
Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 34/224 (15%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L++ +S + GG +DV + P E + +VG +GSGKSTLL AG P G
Sbjct: 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
Query: 64 LHSSSRL--------------------GYLEQNPDLSHFSTISQ--YIDDTIKDTIEAPY 101
S G++ QNP +S I + + Y
Sbjct: 62 YIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHY 121
Query: 102 SPYSLLKKFNLRE----QDRIENL----SVGQTRCVALMKMLISRPDILILDEPTNHLDF 153
L E RI++L S G + + + + L++RP ++ +DEPT LD
Sbjct: 122 GNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181
Query: 154 ----RTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRG 193
R + + + + A+I V+HD L+ + + +G
Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 73.6 bits (181), Expect = 1e-13
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LE ++K++ + V + SL + G++GPNGAGK+TLLK++TG ++P G I
Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI--- 57
Query: 345 TNLKIATIDQKREDIDPDKSL----ASYLTGSSGDSLMVRGESRHVA-GYIKDFLFHPDQ 399
R+D+ SL Y ++ ++L V + I + L D
Sbjct: 58 ---IFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL 114
Query: 400 AHSLMK---HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD---FETLDFLERTITQLQ 453
++ K S G K R +A L LI+DEPTN LD + L L R+ +
Sbjct: 115 TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG 174
Query: 454 GTILIVSH 461
T+++ SH
Sbjct: 175 ITVILSSH 182
Score = 67.4 bits (165), Expect = 9e-12
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
L ++S G + ++ L++ L+G NG+GKSTLLK+ GI P SG +
Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60
Query: 65 -HSSSR-----LGYLEQNPDLSHFSTISQYIDDTIKDTIEA-PYSPY-SLLKKFNLR--E 114
H +R +G L ++P L + ++ + + T+ P S +L +L
Sbjct: 61 GHPWTRKDLHKIGSLIESPPL--YENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG 118
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166
+ + + S+G + + + L++ P +LILDEPTN LD I QEL ++
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGI----QELREL 166
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 73.3 bits (180), Expect = 2e-13
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 41/216 (18%)
Query: 4 PILRLD-----HISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ 58
PI+++ +IS G + + +V L +K E +VG +G+GK+TL KI AG+ EP
Sbjct: 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT 337
Query: 59 SGNVFL------------------HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAP 100
SG V + + +G L Q DL T+ + + I +E P
Sbjct: 338 SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI--GLELP 395
Query: 101 YSPYSLLKKFNLR----EQDRIEN--------LSVGQTRCVALMKMLISRPDILILDEPT 148
+ L+ ++++ E LS G+ VAL ++LI P I+ILDEPT
Sbjct: 396 DELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455
Query: 149 NHLDFRTIHWMEQELLK----INSALIFVSHDRRFL 180
+D T + +LK + I VSHD F+
Sbjct: 456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV 491
Score = 71.4 bits (175), Expect = 7e-13
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 30/216 (13%)
Query: 281 GKLVLEADKITKQY--DDRLVVK---DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIK 335
G+ +++ ++K+Y DR VVK + SL + GE GIVG +GAGKTTL K++ G ++
Sbjct: 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE 335
Query: 336 P-----------------DCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLM 378
P G G + I + D+ P +++ LT + G L
Sbjct: 336 PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELP 395
Query: 379 VRGESRHVAGYIKDFLFHPDQAHSLMK----HLSGGEKMRAIVARVLAQPFNFLIMDEPT 434
+K F ++A ++ LS GE+ R +A+VL + +I+DEPT
Sbjct: 396 DELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455
Query: 435 NDLDFETLDFLERTI----TQLQGTILIVSHDRDFL 466
+D T + +I +++ T +IVSHD DF+
Sbjct: 456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV 491
Score = 71.4 bits (175), Expect = 7e-13
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 58/250 (23%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG------------ 332
+E +TK++D + V+K+ S I GE +GI+G +GAGK+ L+ +L G
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 333 ---KIKPDCGFIT----LGTNLKIATIDQKREDID---PDKSL----------------A 366
+ CG++ +G + + E++D L A
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 367 SYLTGSSGDSLMVRGESRHVAGY--------IKDFLFHPDQAHSLM---KHLSGGEKMRA 415
Y + D+++ E+ GY D + +H + + LSGGEK R
Sbjct: 121 LYGDDTVLDNVL---EALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRV 177
Query: 416 IVARVLA-QPFNFLIMDEPTNDLDFETLDF----LERTITQLQGTILIVSHDRDFLDRTV 470
++AR LA +PF FL DEPT LD +T LE + ++++ SH + ++
Sbjct: 178 VLARQLAKEPFLFL-ADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236
Query: 471 TSTIAAQNIE 480
I +N E
Sbjct: 237 DKAIWLENGE 246
Score = 63.3 bits (154), Expect = 2e-10
Identities = 60/288 (20%), Positives = 119/288 (41%), Gaps = 67/288 (23%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGIT--EPQSGNVF 63
+ + +++ G ++L+++ +I+ E + ++G +G+GKS L+ + G+ EP SG +
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 64 LHSS--SRLGYLEQ-----------------------NPDLSHFS------------TIS 86
H + + GY+E+ N T +
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 87 QYIDDTIKDTI-----EAPYSPYSLLKK-FNLREQDRIE--------NLSVGQTRCVALM 132
Y DDT+ D + E Y + + +L E ++ +LS G+ + V L
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180
Query: 133 KMLISRPDILILDEPTNHLDFRT---IHWMEQELLKINS-ALIFVSHDRRFLETLSTTTV 188
+ L P + + DEPT LD +T +H +E +K + +++ SH +E LS +
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
Query: 189 WLDRGCLHHLD----------QGFAYFESWKKNILQQEQIRYHNLKKK 226
WL+ G + +G + E + + + I+ N+ K+
Sbjct: 241 WLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKR 288
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 72.8 bits (179), Expect = 3e-13
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 14/184 (7%)
Query: 292 KQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIAT 351
K Y D V + ++ GE G +GPNGAGKTT +++LT ++P G + +
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 352 IDQKREDID---PDKSLASYLTGSSGDSLMVR------GESRHVAGYIKDFLFHPDQAHS 402
+ R I S+ LTG +M R E+ A + + + A
Sbjct: 61 PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120
Query: 403 LMKHLSGGEKMR-AIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG---TILI 458
+ SGG + R I A ++ QP + L +DEPT LD T + I L+ TIL+
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQP-DVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 459 VSHD 462
+H
Sbjct: 180 TTHY 183
Score = 56.2 bits (136), Expect = 3e-08
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 26/161 (16%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGY-LE 74
G + V ++ E +G NG+GK+T +++ + P SG + GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV-----AGYDVV 58
Query: 75 QNPDLSH------FSTISQYIDDTIKDTIEAPYSPY------------SLLKKFNLRE-- 114
+ P S D T ++ +E Y LL+ F L E
Sbjct: 59 REPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
+ S G R + + LI +PD+L LDEPT LD RT
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 72.5 bits (178), Expect = 3e-13
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 10/178 (5%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATID 353
+ ++KD S++ G IVGP+GAGK+TL+KL+ I P G I + G ++K +
Sbjct: 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI 73
Query: 354 QKREDIDPDKSLASYLTGSSGDSL----MVRGESR-HVAGYIKDFLFHPDQAHSLMKHLS 408
R I G+ D++ M++GE V Y+ + + A +K+LS
Sbjct: 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLS 133
Query: 409 GGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----TILIVSHD 462
GGE R +AR LA L++DEPT+ LD + + +E I +L+ T++ ++H+
Sbjct: 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191
Score = 59.1 bits (143), Expect = 3e-09
Identities = 53/227 (23%), Positives = 111/227 (48%), Gaps = 45/227 (19%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS-------- 68
G ++L+D+ + + +VG +G+GKSTL+K+ + +P G++ +
Sbjct: 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID 74
Query: 69 ---RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPY----------------SLLKK 109
++G + Q P L + T+KD IE Y P L K+
Sbjct: 75 LRRKIGMVFQQPHL---------FEGTVKDNIE--YGPMLKGEKNVDVEYYLSIVGLNKE 123
Query: 110 FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL----K 165
+ R+ ++NLS G+ + V++ + L + P++L+LDEPT+ LD + +E+ ++ K
Sbjct: 124 YATRD---VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180
Query: 166 INSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNI 212
+N +I+++H+ + + T +L++G L + + +F + + +
Sbjct: 181 MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEV 227
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 72.6 bits (178), Expect = 3e-13
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 32/216 (14%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
+ +TK++ V+ + + GE + ++GP+G+GK+T+L++L D G I +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 344 --------GTNLKIATIDQK-----REDID---------PDKSLASYLTGSSGDSL-MVR 380
G N + D+K R I P K++ +T + L M R
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 381 GESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD-- 438
E+ A + D + D+A + LSGG++ R +AR LA ++ DE T+ LD
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 439 --FETLDFLERTITQLQGTILIVSHD----RDFLDR 468
E L+ + R ++ T+L+V+H+ R+F DR
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADR 216
Score = 54.1 bits (130), Expect = 1e-07
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 37/227 (16%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIA---AGITEPQ---S 59
+R ++ G + +L + S+ E++ L+G +GSGKST+L+I I E Q
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 60 GNVFLHSSSRLGYLEQNPDLSHFSTISQYID------------DTIKDTIEAPY------ 101
G H R G L D H + I + + EAP
Sbjct: 61 GEQLYHMPGRNGPLVP-ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMA 119
Query: 102 ------SPYSLLKKFNLREQDRI--ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF 153
LL L ++ LS GQ + VA+ + L RP +++ DE T+ LD
Sbjct: 120 RAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179
Query: 154 RTIHWMEQELLKINS----ALIFVSHDRRFLETLSTTTVWLDRGCLH 196
+ + + ++ S ++ V+H+ F + + D+G +
Sbjct: 180 ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 72.2 bits (178), Expect = 3e-13
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 44/234 (18%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL- 79
L+ + L IK E++ L+G G GKSTLL++ +PQ G + L+ Y E L
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEA--ALR 413
Query: 80 SHFSTISQYID---DTIKD--TIEAPYSP----YSLLKKFNLR---EQDRIEN------- 120
S +SQ + T++D + AP + +L++ L E D+ N
Sbjct: 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473
Query: 121 --LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI------NSALIF 172
LS G+ R + + + L+ +L+LDEPT LD T E+++L++ N ++
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET----ERQILELLAEHAQNKTVLM 529
Query: 173 VSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKK 226
++H LE DR C+ +D G E L +Q RY+ LK++
Sbjct: 530 ITHRLTGLEQ-------FDRICV--MDNG-QIIEQGTHQELLAQQGRYYQLKQR 573
Score = 52.5 bits (127), Expect = 3e-07
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 258 QLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDR--LVVKDFSLRIHYGECIGI 315
++ EQK + Q S L + ++ Y D+ V+K SL+I GE + +
Sbjct: 316 EITEQKPEVTFPTTSTAAADQVS----LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVAL 371
Query: 316 VGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLK 348
+G G GK+TLL+LLT P G I L G +
Sbjct: 372 LGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405
Score = 48.7 bits (117), Expect = 5e-06
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 10/61 (16%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-----QG-TILIVS 460
LSGGE+ R +AR L L++DEPT LD ET ER I +L Q T+L+++
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET----ERQILELLAEHAQNKTVLMIT 531
Query: 461 H 461
H
Sbjct: 532 H 532
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 72.2 bits (177), Expect = 4e-13
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 28/184 (15%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLK---------- 348
V D S G+ + IVGP GAGKTTL+ LL P G I + G ++
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410
Query: 349 IATIDQK--------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPD-Q 399
IAT+ Q RE+I + G++ + + ++ +I D
Sbjct: 411 IATVFQDAGLFNRSIRENIRLGR------EGATDEEVYEAAKAAAAHDFILKRSNGYDTL 464
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TIL 457
LSGGE+ R +AR + + L++DE T+ LD ET ++ I L+ T
Sbjct: 465 VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTF 524
Query: 458 IVSH 461
I++H
Sbjct: 525 IIAH 528
Score = 42.6 bits (100), Expect = 3e-04
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 23 DVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHF 82
DV K + + +VG G+GK+TL+ + + +P G + + + + +
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID-INTVTRESLRKSI 411
Query: 83 STISQ---YIDDTIKDTI----------------EAPYSPYSLLKKFNLREQ---DRIEN 120
+T+ Q + +I++ I +A + +LK+ N + +R
Sbjct: 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR 471
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
LS G+ + +A+ + ++ IL+LDE T+ LD T
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVET 506
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 71.7 bits (176), Expect = 4e-13
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 32/210 (15%)
Query: 284 VLEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
++ ++++K Y + + + + I GE + +VG +GAGK+T LKL+ G KP G I
Sbjct: 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60
Query: 342 TLG----TNLKIATIDQKREDID---PDKSLASYLT------------GSSGDSLMVRGE 382
T L+ I R I D L S T G +
Sbjct: 61 RFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPR------D 114
Query: 383 SRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET- 441
+ + + +AH+L LSGGE+ R +AR + L+ DEPT +LD E
Sbjct: 115 ANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174
Query: 442 ---LDFLERTITQLQGTILIVSHDRDFLDR 468
+ E + T+L+ +HD + ++
Sbjct: 175 RDIMRLFEE-FNRRGTTVLVATHDINLVET 203
Score = 66.3 bits (162), Expect = 2e-11
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 35/221 (15%)
Query: 5 ILRLDHISATI-GGIDL-LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
++R + +S GG L ++ I E + LVG +G+GKST LK+ GI +P G +
Sbjct: 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60
Query: 63 FLH-------SSSRLGYLEQNPDLSHFSTISQ----YIDDTIKDTI------------EA 99
+ + +L + H + Q D T+ D + +A
Sbjct: 61 RFNGQDLTRLRGREIPFLRR-----HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDA 115
Query: 100 PYSPYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD---FR 154
+ L+K L + LS G+ + VA+ + ++ +P +L+ DEPT +LD R
Sbjct: 116 NERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175
Query: 155 TIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
I + +E + + ++ +HD +ET T+ L RG L
Sbjct: 176 DIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 71.5 bits (176), Expect = 6e-13
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 37/162 (22%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSR---------- 69
L+++ L+++P +R+ LVG +GSGKST+ K+ AG+ +P SG + R
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553
Query: 70 -LGYLEQNPDLSHFS-TISQYI---DDT--------------IKDTIEAPYSPYSLLKKF 110
+ ++Q D+ F T+ + D T I D I + Y
Sbjct: 554 SVAMVDQ--DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYD----A 607
Query: 111 NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
L E NLS GQ + + + + L+ P ILILDE T+ LD
Sbjct: 608 ELAEGGA--NLSGGQRQRLEIARALVRNPSILILDEATSALD 647
Score = 63.4 bits (155), Expect = 2e-10
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 36/213 (16%)
Query: 276 TTQSSGKLV--LEADKITKQY--DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT 331
++ S +L +E IT Y + ++++FSL + G+ + +VG +G+GK+T+ KL+
Sbjct: 467 GSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA 526
Query: 332 GKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESR------- 384
G +P G I RE+I P + LA+ + D + G R
Sbjct: 527 GLYQPWSGEILFD--------GIPREEI-PREVLANSVAMVDQDIFLFEGTVRDNLTLWD 577
Query: 385 ------HVAGYIKDFLFH------PDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFL 428
+ KD H P + + +LSGG++ R +AR L + + L
Sbjct: 578 PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSIL 637
Query: 429 IMDEPTNDLDFETLDFLERTITQLQGTILIVSH 461
I+DE T+ LD ET ++ + + T +IV+H
Sbjct: 638 ILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 71.4 bits (175), Expect = 7e-13
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 11 ISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS-- 68
IS G L DV L + + L+G +GSGKSTLL+I AG+ +P SG + L+
Sbjct: 6 ISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT 65
Query: 69 -------RLGYLEQNPDLSHFSTISQYIDDTIK----DTIEAPYSPYSLLKKFNLRE-QD 116
++G++ Q+ L T+ I ++ + LL+ L D
Sbjct: 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD 125
Query: 117 RIEN-LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH----WMEQELLKINSALI 171
R N LS GQ + VAL + L P +L+LDEP LD + W+ + +++ +
Sbjct: 126 RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 172 FVSHD 176
FV+HD
Sbjct: 186 FVTHD 190
Score = 66.0 bits (161), Expect = 3e-11
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 26/199 (13%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
+E I+K++ + D +L + G + ++GP+G+GK+TLL+++ G +PD G I L
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 344 ---GTNLKIATIDQKRED--IDPDKSLASYLTGSSGDS--LMVRGESRHVAGYIK---DF 393
T + + R+ + +L +LT + L +R +H IK +
Sbjct: 61 GQDATRVHA----RDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEE 113
Query: 394 LFHPDQ----AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
L Q LSGG++ R +AR LA L++DEP LD + L +
Sbjct: 114 LLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173
Query: 450 TQLQG----TILIVSHDRD 464
+L T + V+HD++
Sbjct: 174 RKLHDEVHVTTVFVTHDQE 192
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 71.3 bits (175), Expect = 7e-13
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQ 354
D+ + +L + GE + +VGP+GAGK+TL +LL P G I L G +L+ +
Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411
Query: 355 KREDI-----DPDKSLASYLTG-------SSGDSLMVRGESRHVAGYIKDFLFHPDQAHS 402
R + DP AS + ++ + + + H +I P+ +
Sbjct: 412 LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISAL---PEGYDT 468
Query: 403 LM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-QG-TI 456
+ LSGG++ R +AR + + L++DE T+ LD E+ +++ + L +G T
Sbjct: 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTT 528
Query: 457 LIVSH 461
LI++H
Sbjct: 529 LIIAH 533
Score = 51.2 bits (123), Expect = 7e-07
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 23/165 (13%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS-----------SSR 69
L + L+++P E + LVG +G+GKSTL ++ +PQSG + L +R
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415
Query: 70 LGYLEQNPDL---SHFSTISQY--IDDTIKDTIEAPYSPYS------LLKKFNLREQDRI 118
+ + Q+P L S I +Y D T ++ A + ++ L + ++ +R
Sbjct: 416 MALVPQDPVLFAASVMENI-RYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERG 474
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
LS GQ + +A+ + ++ IL+LDE T+ LD + ++Q L
Sbjct: 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 71.0 bits (174), Expect = 9e-13
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 23/179 (12%)
Query: 36 LVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS---------RLGYLEQN----PDLSHF 82
L+G +G GK+TLL++ AG +P SG++ L + + Q+ P ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 83 STIS--QYIDDTIKDTIEAPYSPYSLLKKFNLRE--QDRIENLSVGQTRCVALMKMLISR 138
++ + + I+ L+ L E + LS GQ + VAL + L+ +
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVL--EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFK 118
Query: 139 PDILILDEPTNHLDFRTIHWMEQELLKINSAL----IFVSHDRRFLETLSTTTVWLDRG 193
P IL+LDEP + LD + M+ EL I L +FV+HD+ T+S + +G
Sbjct: 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177
Score = 51.7 bits (124), Expect = 5e-07
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID---PDKSLASYLTG 371
++GP+G GKTTLL+LL G +PD G I L + + I+ +L ++T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLD-GEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 372 SSGDS--LMVRGESR-HVAGYIKDFLFH---PDQAHSLMKHLSGGEKMRAIVARVLAQPF 425
+ L +R R + + + L + A LSGG++ R +AR L
Sbjct: 60 EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKP 119
Query: 426 NFLIMDEPTNDLDFETLDFLERTITQLQG----TILIVSHDR 463
L++DEP + LD + D ++ + +Q T + V+HD+
Sbjct: 120 KILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 70.5 bits (173), Expect = 1e-12
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 27/200 (13%)
Query: 285 LEADKITKQY--DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+E +T +Y DR + SL I GE + +VG +G+GK+TL+ L+ +PD G I
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 343 L-GTNLKIATIDQKREDIDP--------DKSLASYLT-GSSGDSLMVRGESRHVAGYIKD 392
L G +L T+ R + + ++A+ + G + + E A Y +D
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQD 450
Query: 393 FLFH-PDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
F+ P + + LSGG++ R +AR L + LI+DE T+ LD E+ ER
Sbjct: 451 FVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES----ER 506
Query: 448 TITQ-----LQG-TILIVSH 461
+ +QG T L+++H
Sbjct: 507 LVQAALERLMQGRTTLVIAH 526
Score = 62.8 bits (153), Expect = 2e-10
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 32/175 (18%)
Query: 6 LRLDHISATIGG--IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+ +++ G L + L I+P E + LVG +GSGKSTL+ + EP SG +
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 64 LHSSSRLGYLEQNPDL-SHFSTISQYI---DDTIKDTIEAPYSPYSLLKKFNLRE----- 114
L Y L + +SQ + +DTI + I Y + +
Sbjct: 391 LDGHDLADYTLA--SLRRQVALVSQDVVLFNDTIANNIA--YGRTEQADRAEIERALAAA 446
Query: 115 --QDRIE---------------NLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
QD ++ LS GQ + +A+ + L+ ILILDE T+ LD
Sbjct: 447 YAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 69.7 bits (171), Expect = 2e-12
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 16/188 (8%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+L++ H+ A GG L+D+ L+++ E + ++G +G GK+TLL + AG Q G++ L
Sbjct: 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60
Query: 65 HS------SSRLGYLEQNPDLSHFSTISQYIDDTIK----DTIEAPYSPYSLLKKFNLR- 113
+ G + QN L + + + ++ + ++ + +LKK L
Sbjct: 61 DGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG 120
Query: 114 -EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NS 168
E+ I LS GQ + V + + L + P +L+LDEP LD T M+ LLK+
Sbjct: 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGK 180
Query: 169 ALIFVSHD 176
++ ++HD
Sbjct: 181 QVLLITHD 188
Score = 68.2 bits (167), Expect = 7e-12
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 11/188 (5%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L+ + Y + ++D +L + GE + ++GP+G GKTTLL L+ G + G ITL
Sbjct: 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSL------MVRGESRHVAGYIKDFLFHPD 398
+ +R + ++ L + + + + + +A + +
Sbjct: 62 -GKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG 120
Query: 399 QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-QGT-- 455
+ LSGG++ R +AR LA L++DEP LD T + ++ + +L Q T
Sbjct: 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGK 180
Query: 456 -ILIVSHD 462
+L+++HD
Sbjct: 181 QVLLITHD 188
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 69.7 bits (170), Expect = 2e-12
Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 30/211 (14%)
Query: 280 SGKLVLEADKITKQY---DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT----- 331
+GK + I++ Y +D+ ++KD +++I GI+GP+G+GK+TLLK+L
Sbjct: 3 AGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI 62
Query: 332 --GKIKPDCGFITLGTNL-KIATIDQKRE------DIDPDKSLASYLTGSSGDSLMVRG- 381
KIK D + G ++ +I I ++E +P L+ Y + L G
Sbjct: 63 YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIY--DNIAYPLKSHGI 120
Query: 382 -ESRHVAGYIKDFLFHP-------DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEP 433
E R + +++ L D+ +S LSGG++ R +AR LA L+MDEP
Sbjct: 121 KEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180
Query: 434 TNDLDFETLDFLERTITQLQG--TILIVSHD 462
T+ +D +E+ IT+L+ I+IVSH+
Sbjct: 181 TSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211
Score = 45.0 bits (106), Expect = 6e-05
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 30/226 (13%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS------------ 67
+L+D+ + I ++G +GSGKSTLLK+ + E + +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 68 -----SRLGYLEQNPD----LSHFSTI-----SQYIDDT--IKDTIEAPYSPYSLLKKFN 111
+G + Q P+ LS + I S I + IK +E L K+
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 112 LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSA 169
R LS GQ + + + + L +P +L++DEPT+ +D +E+ + LK A
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204
Query: 170 LIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQ 215
++ VSH+ + + ++ +L G L F S K + ++
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 69.5 bits (170), Expect = 2e-12
Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 5 ILRLDHIS-ATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
++R +H+S A +GG LQ V ++P E L G +G+GKSTLLK+ GI P +G ++
Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 64 L--HSSSRLGYLEQNPDLSHFSTISQ----YIDDTIKDTIEAPY------------SPYS 105
H +RL E I Q +D T+ D + P +
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA 120
Query: 106 LLKKFNLREQDRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHW 158
L K L D+ +N LS G+ + V + + ++++P +L+ DEPT +LD I
Sbjct: 121 ALDKVGL--LDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178
Query: 159 MEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLH 196
+ +E ++ ++ +HD + S + L G LH
Sbjct: 179 LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
Score = 56.8 bits (137), Expect = 2e-08
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG----TNLKIATIDQKRE 357
F +R GE + G +GAGK+TLLKL+ G +P G I T LK + R
Sbjct: 22 TFHMRP--GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79
Query: 358 DID---------------PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHS 402
I + ++ + G+SGD + R V+ + D + D+A +
Sbjct: 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDI-----RRRVSAAL-DKVGLLDKAKN 133
Query: 403 LMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG---TILIV 459
LSGGE+ R +AR + L+ DEPT +LD + + R + T+L+
Sbjct: 134 FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMA 193
Query: 460 SHDRDFLDR 468
+HD + R
Sbjct: 194 THDIGLISR 202
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 69.4 bits (170), Expect = 2e-12
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 22/176 (12%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS--SRLG----YLE 74
L+ V L+I+ E I L+G +G GKSTLL + +G+ +P SG V L + G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 75 QNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKF--------NLRE--QDRIENLSVG 124
QN L + T+ + I + + P S + L E R LS G
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVL--PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGG 118
Query: 125 QTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NSALIFVSHD 176
+ VA+ + L RP +L+LDEP LD T +++EL++I ++ V+HD
Sbjct: 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
Score = 62.9 bits (153), Expect = 2e-10
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 23/193 (11%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED- 358
+K +L I GE I ++G +G GK+TLL L++G +P G G L+ I + D
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG----GVILEGKQITEPGPDR 56
Query: 359 --IDPDKSLASYLTGSSGDSLMV--------RGESRHVAGYIKDFLFHPDQAHSLMKHLS 408
+ + SL +LT +L V + E R + + + A LS
Sbjct: 57 MVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLS 116
Query: 409 GGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL----QGTILIVSHDRD 464
GG K R +AR L+ L++DEP LD T L+ + Q+ + T+L+V+HD D
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176
Query: 465 ---FL-DRTVTST 473
L DR V T
Sbjct: 177 EALLLSDRVVMLT 189
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 69.5 bits (170), Expect = 2e-12
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 39/206 (18%)
Query: 279 SSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC 338
+ +L A + ++ V + GE + + G NGAGKTTLL++L G + +
Sbjct: 6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES 65
Query: 339 GFITLGTNLKIATIDQKR------------EDIDPDKSLASYLTG--------SSGDSLM 378
G I + D+ R D+ ++L +L G G +L
Sbjct: 66 GQIQIDGK-TATRGDRSRFMAYLGHLPGLKADLSTLENL-HFLCGLHGRRAKQMPGSALA 123
Query: 379 VRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
+ G +AGY +L++ LS G+K R +AR+ P ++DEP +LD
Sbjct: 124 IVG----LAGY----------EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
Query: 439 FETLDFLERTIT---QLQGTILIVSH 461
E + + R I+ + G L+ +H
Sbjct: 170 LEGITLVNRMISAHLRGGGAALVTTH 195
Score = 51.0 bits (122), Expect = 8e-07
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 28 IKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL--HSSSRLGYLEQNPDLSHFSTI 85
+ E + + G NG+GK+TLL++ AG+ +SG + + +++R L H +
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 86 SQYIDDTIKDTIE------------APYSPYSLLKKFNL--REQDRIENLSVGQTRCVAL 131
+ T+E A P S L L E + LS GQ + +AL
Sbjct: 94 KADL-----STLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLAL 148
Query: 132 MKMLISRPDILILDEPTNHLDFRTI 156
++ +S + +LDEP +LD I
Sbjct: 149 ARLWLSPAPLWLLDEPYANLDLEGI 173
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 69.1 bits (169), Expect = 3e-12
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+LE +TK +D + V D SL I+ GE ++G +G GK+TLL++L G +P G I L
Sbjct: 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78
Query: 344 -GTNLKIATIDQKREDID---PDKSLASYLT-------GSSGDSLMVRGESRHVAGYIKD 392
G +L + + + I+ +L ++T G D L + E +
Sbjct: 79 DGVDL--SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLG 135
Query: 393 FLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD--------FETLDF 444
+ + A LSGG++ R +AR LA+ L++DEP LD E +D
Sbjct: 136 LVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195
Query: 445 LERTITQLQGTILIVSHDRD 464
LER + T ++V+HD++
Sbjct: 196 LER----VGVTCVMVTHDQE 211
Score = 66.8 bits (163), Expect = 1e-11
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 41/220 (18%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L + +++ + G + DV L+I E L+G +G GKSTLL++ AG +P +G +
Sbjct: 18 PLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
Query: 64 LHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRI----- 118
L DLSH + I+ + P+ F L+ QD++
Sbjct: 78 LDGV----------DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLK-QDKLPKAEI 126
Query: 119 ---------------------ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
LS GQ + VAL + L RP +L+LDEP LD +
Sbjct: 127 ASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186
Query: 158 WMEQELLKI----NSALIFVSHDRRFLETLSTTTVWLDRG 193
M+ E++ I + V+HD+ T++ ++RG
Sbjct: 187 RMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 69.1 bits (169), Expect = 3e-12
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 56/257 (21%)
Query: 5 ILRLDHISATIG-GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
IL+++ ++ G L+ + ++IK E ++G NG+GKSTL + GI +P SG +
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 64 LHSS----SRLGYLE---------QNPDLSHFSTISQYIDDTIKDTIEAPYSPYSL-LKK 109
SR G ++ Q+PD FS S Y D + +L L +
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA-SVYQD--------VSFGAVNLKLPE 115
Query: 110 FNLREQDRIEN-----------------LSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+R+ R++N LS GQ + VA+ +L+ P +L+LDEPT LD
Sbjct: 116 DEVRK--RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 153 FRTIHWMEQELLKINSAL----IFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESW 208
+ + + L+++ L I +HD + ++ D + + +G +
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHD------IDIVPLYCDNVFV--MKEGRVILQGN 225
Query: 209 KKNIL-QQEQIRYHNLK 224
K + ++E +R NL+
Sbjct: 226 PKEVFAEKEMLRKVNLR 242
Score = 65.6 bits (160), Expect = 3e-11
Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 30/205 (14%)
Query: 284 VLEADKITKQYDDRL-VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+L+ +++ Y D +K ++ I GE I+G NGAGK+TL + L G +KP G I
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 343 LGTNLKIATIDQKREDI------------DPDKSL--ASYLTGSSGDSLMVRGESRHVAG 388
ID R+ + DPD L AS S ++ ++ V
Sbjct: 65 FDGK----PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 389 YIKDFLFHPDQAHSLMKH-----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----F 439
+ + L H +K LS G+K R +A VL L++DEPT LD
Sbjct: 121 RVDNALKRTGIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 440 ETLDFLERTITQLQGTILIVSHDRD 464
E + L +L TI+I +HD D
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHDID 203
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 69.0 bits (169), Expect = 3e-12
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 42/198 (21%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI---TLGTNLKIATIDQK 355
V+K+ SL ++ GEC+ + GP+GAGK+TLLK L PD G I G + +A
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP- 81
Query: 356 REDIDPDKSLASYLTG--------SSGD----SLMVRGESRHVAGYIKDFLFHPDQAHSL 403
RE ++ + Y++ S+ + L+ RG R A +A L
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAAR---------ARAREL 132
Query: 404 MKHL--------------SGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
+ L SGGE+ R +AR + L++DEPT LD + I
Sbjct: 133 LARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 450 TQL--QGTILI-VSHDRD 464
+ +G LI + HD +
Sbjct: 193 AEAKARGAALIGIFHDEE 210
Score = 46.2 bits (110), Expect = 3e-05
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 37/204 (18%)
Query: 16 GGIDL--LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF-LHSSS---- 68
GG+ L L++V L++ E + L G +G+GKSTLLK P SG + H +
Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76
Query: 69 --------------RLGYLEQN----PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKF 110
+GY+ Q P +S +++ + + A LL +
Sbjct: 77 AQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARL 136
Query: 111 NLREQDRIENL-----SVGQTRCVALMKMLISRPDILILDEPTNHLD----FRTIHWMEQ 161
N+ E R+ +L S G+ + V + + I+ IL+LDEPT LD + +
Sbjct: 137 NIPE--RLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI-A 193
Query: 162 ELLKINSALIFVSHDRRFLETLST 185
E +ALI + HD E ++
Sbjct: 194 EAKARGAALIGIFHDEEVRELVAD 217
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 68.9 bits (169), Expect = 3e-12
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 32/169 (18%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
L +++ + G L + + ++ E + + G NG GK+TLL+I AG+ P SG V
Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60
Query: 65 ---HSSSRLGYLEQ----------NPDLS-----HF-STISQYIDDTIKDTIEAPYSPYS 105
+ R P+LS HF + I TI+D
Sbjct: 61 GTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIED---------- 110
Query: 106 LLKKFNLR--EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
L L E LS GQ R +AL ++ +SR + ILDEPT LD
Sbjct: 111 ALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
Score = 68.5 bits (168), Expect = 5e-12
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 18/190 (9%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L A + +R++ + S ++ GE + + GPNG GKTTLL++L G ++PD G +
Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQA---- 400
D+ +I +L G + L A + A
Sbjct: 61 GTALAEQRDEPHRNI----LYLGHLPGLKPE-LSALENLHFWAAIHGGAQRTIEDALAAV 115
Query: 401 ------HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTIT---Q 451
LS G++ R +AR+ I+DEPT LD + L +
Sbjct: 116 GLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175
Query: 452 LQGTILIVSH 461
G +L+ +H
Sbjct: 176 RGGIVLLTTH 185
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 68.5 bits (168), Expect = 5e-12
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L + +T Y + ++ D SL + G+ ++GPNG GK+TLLK + P G + LG
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 345 TNLKIATIDQKREDIDPDKSLASYLT----------GSSGDSLMVRGESRHVAGYIKDFL 394
I+ + + LA L G + L+ G S ++ + + L
Sbjct: 63 DK-PISMLS--------SRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR--L 111
Query: 395 FHPDQAH---------------SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF 439
D A + LSGG++ RA +A VLAQ +++DEPT LD
Sbjct: 112 SAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
Query: 440 ETLDFLERTITQLQG---TILIVSHD 462
L R + +L T++ V HD
Sbjct: 172 NHQVELMRLMRELNTQGKTVVTVLHD 197
Score = 63.9 bits (156), Expect = 1e-10
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 48/208 (23%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
LR ++++ G +L D+ LS+ + L+G NG GKSTLLK A + PQSG VFL
Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61
Query: 65 HSSSRLGYLEQNPDLSHFST--ISQYI-----------DDTIKDTIEAPYSPY-SLLKKF 110
+S S+ +++ + T+++ + SP+ SL +
Sbjct: 62 GDK----------PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL 111
Query: 111 NLREQD-----------------RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF 153
+ + R+ +LS GQ + L +L +++LDEPT +LD
Sbjct: 112 SAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
Query: 154 RTIHWME-----QELLKINSALIFVSHD 176
H +E +EL ++ V HD
Sbjct: 172 N--HQVELMRLMRELNTQGKTVVTVLHD 197
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 68.2 bits (167), Expect = 5e-12
Identities = 65/202 (32%), Positives = 97/202 (48%), Gaps = 30/202 (14%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
MS+ I +I + G +L D+ L I + + L+G +GSGK+TLL+I AG+ SG
Sbjct: 1 MSIEI---ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG 57
Query: 61 NVFLHSS--SRL-------GYLEQNPDLSHFSTISQYI--DDTIKDTIEAPYSPYSLLKK 109
++ H + SRL G++ Q+ L T+ I T+ E P + K
Sbjct: 58 HIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV 117
Query: 110 FNLREQDRIEN--------LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT----IH 157
L E ++ + LS GQ + VAL + L P IL+LDEP LD +
Sbjct: 118 TQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRR 177
Query: 158 WMEQ--ELLKINSALIFVSHDR 177
W+ Q E LK S +FV+HD+
Sbjct: 178 WLRQLHEELKFTS--VFVTHDQ 197
Score = 50.5 bits (121), Expect = 1e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
+E I K + V+ D SL I G+ + ++GP+G+GKTTLL+++ G
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50
Score = 39.7 bits (93), Expect = 0.002
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----TILIVSHD 462
LSGG+K R +AR LA L++DEP LD + L R + QL T + V+HD
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196
Query: 463 RD 464
++
Sbjct: 197 QE 198
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 68.2 bits (167), Expect = 6e-12
Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKREDID 360
D + I G +G+GKTTL++L+ G +PD G I L G L + +K +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDS---RKGIFLP 71
Query: 361 PDKSLASYL--TGSSGDSLMVRGESRHVAGY----IKDFLFHPDQAHSLM---------- 404
P+K Y+ L VRG R+ G + ++ L+
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRY--GMKRARPSERRISFERVIELLGIGHLLGRLP 129
Query: 405 KHLSGGEKMRAIVAR-VLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIV 459
LSGGEK R + R +L+ P L+MDEP LD +E L +LER + IL V
Sbjct: 130 GRLSGGEKQRVAIGRALLSSP-RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 460 SHDRD 464
SH
Sbjct: 189 SHSLQ 193
Score = 59.7 bits (145), Expect = 2e-09
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 27/207 (13%)
Query: 11 ISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH----- 65
S +G L D ++ + + G +GSGK+TL+++ AG+T P G + L+
Sbjct: 5 FSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF 62
Query: 66 SSS----------RLGYLEQNPDL-SHFSTISQ----YIDDTIKDTIEAPYSPYSLLKKF 110
S R+GY+ Q L H S + + LL
Sbjct: 63 DSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG 122
Query: 111 NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD----FRTIHWMEQELLKI 166
+L + LS G+ + VA+ + L+S P +L++DEP LD + + ++E+ +
Sbjct: 123 HLLGR-LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 167 NSALIFVSHDRRFLETLSTTTVWLDRG 193
+++VSH + + L+ V L+ G
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDG 208
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 66.9 bits (164), Expect = 1e-11
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT-L 343
LE ++ Y R + D S + GE + ++GPNGAGK+TL LLT G I+
Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 344 GTNLK---------IATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFL 394
G +L+ + + Q+ +D D S+ L + + R E+R + L
Sbjct: 62 GHDLRRAPRAALARLGVVFQQPT-LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL 120
Query: 395 FHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL 452
++A ++ L+GG + R +AR L L++DEPT LD + + + L
Sbjct: 121 GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRAL 178
Score = 59.6 bits (145), Expect = 2e-09
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L + +S G L DV +++P E + L+G NG+GKSTL + + Q G + +
Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 66 SSS----------RLGYLEQNP----DLSHFSTISQYID------DTIKDTIEAPYSPYS 105
RLG + Q P DLS + + ++ I A
Sbjct: 62 GHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAA------ 115
Query: 106 LLKKFNLREQ--DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
LL + L E+ D++ L+ G R V + + L+ RP +L+LDEPT LD
Sbjct: 116 LLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 66.7 bits (163), Expect = 1e-11
Identities = 60/209 (28%), Positives = 86/209 (41%), Gaps = 37/209 (17%)
Query: 283 LVLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
++E + + +Y D +K SL I G ++GPNGAGK+TLL L G P G +
Sbjct: 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 342 T-LGTNLKIATIDQKREDI-----DPDKSLASYLT-----------GSSGDSLMVRGESR 384
+G + R + DPD + S G D + R E
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 385 HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD------ 438
A + DF HLS G+K R +A VLA + +++DEP LD
Sbjct: 123 LKAVRMWDF------RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 439 -FETLDFLERTITQLQG-TILIVSHDRDF 465
E LD L QG T+++ +HD D
Sbjct: 177 LMEILDRLHN-----QGKTVIVATHDVDL 200
Score = 61.3 bits (149), Expect = 8e-10
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 25/183 (13%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS--------- 67
G L+ + LSI + L+G NG+GKSTLL GI PQ G V +
Sbjct: 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKW 76
Query: 68 --SRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN-----LREQDRIE- 119
S++G + Q+PD FS S DD + + ++ +R D +
Sbjct: 77 VRSKVGLVFQDPDDQVFS--STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK 134
Query: 120 ---NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR---TIHWMEQELLKINSALIFV 173
+LS GQ + VA+ +L PD+++LDEP +LD R T+ + L +I
Sbjct: 135 PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVA 194
Query: 174 SHD 176
+HD
Sbjct: 195 THD 197
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 66.6 bits (163), Expect = 2e-11
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 45/194 (23%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLK--------- 348
++ S R+ GE + I+GP+G+GK+TL +L+ G P G + L G +LK
Sbjct: 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392
Query: 349 ---------------IA-TIDQKREDIDPDKSL-ASYLTGSSGDSLMVRGESRHVAGYIK 391
+A I + E+ DP+K + A+ L G L++R GY
Sbjct: 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVH--ELILRLPD----GY-- 444
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVL-AQPFNFLIMDEPTNDLDFETLDFLERTIT 450
D + P A LSGG++ R +AR L P +++DEP ++LD E L I
Sbjct: 445 DTVIGPGGA-----TLSGGQRQRIALARALYGDPK-LVVLDEPNSNLDEEGEQALANAIK 498
Query: 451 QLQ---GTILIVSH 461
L+ T+++++H
Sbjct: 499 ALKARGITVVVITH 512
Score = 65.1 bits (159), Expect = 6e-11
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 1 MSLP----ILRLDHISAT--IGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGI 54
M LP L +++++ G L+ + ++ E + ++G +GSGKSTL ++ GI
Sbjct: 308 MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI 367
Query: 55 TEPQSGNVFLHSSS-----------RLGYLEQNPDLSHFS-TISQYI---DDTIKD--TI 97
P SG+V L + +GYL Q+ +L F T+++ I + I
Sbjct: 368 WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL--FPGTVAENIARFGENADPEKII 425
Query: 98 EAPYSP------YSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHL 151
EA L ++ LS GQ + +AL + L P +++LDEP ++L
Sbjct: 426 EAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485
Query: 152 D 152
D
Sbjct: 486 D 486
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 66.8 bits (164), Expect = 2e-11
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 36/169 (21%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
L + +++ G +L+ V L + E C++G NG GK+TLLK G+ +SG++ L
Sbjct: 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60
Query: 65 ---------HSSSR--LGYLEQN----PDLS----------HFSTISQYIDDTIKDTIEA 99
H +R + Y+ Q P L+ S+ I D I
Sbjct: 61 GEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEI------ 114
Query: 100 PYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPT 148
Y + +LK+ R R +LS GQ + +A+ + L++RP +L+LDEPT
Sbjct: 115 -YELFPVLKEMLGR---RGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
Score = 61.8 bits (151), Expect = 5e-10
Identities = 60/209 (28%), Positives = 90/209 (43%), Gaps = 43/209 (20%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
LE + Y +++ SL + GE ++G NG GKTTLLK L G + G I L
Sbjct: 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60
Query: 344 GTNLK-----------IATIDQKREDIDPDKSLASYL-TGSSGDSLMVRGESRHVAGYIK 391
G ++ IA + Q RE I P ++ L TG + + SR +
Sbjct: 61 GEDITKLPPHERARAGIAYVPQGRE-IFPRLTVEENLLTGLAA----LPRRSRKI----- 110
Query: 392 DFLFHPDQAHSL------MKH-----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
PD+ + L M LSGG++ + +AR L L++DEPT +
Sbjct: 111 -----PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS 165
Query: 441 TLDFLERTITQL--QG--TILIVSHDRDF 465
+ + R I +L +G IL+V DF
Sbjct: 166 IIKDIGRVIRRLRAEGGMAILLVEQYLDF 194
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 66.7 bits (163), Expect = 2e-11
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 33/205 (16%)
Query: 5 ILRLDHISATIGG----IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
I+ + H+ ++G + +L V L +K E I L+G +GSGKSTLL I AG+ + SG
Sbjct: 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG 65
Query: 61 NVFL--HSSSRL-------------GYLEQN----PDLSHFSTISQYIDDTIKDTIEAPY 101
V L ++ G++ Q+ P L+ + + + ++
Sbjct: 66 EVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRN 125
Query: 102 SPYSLLKKFNLREQDRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
+LL++ L + R+++ LS G+ + VAL + RPD+L DEPT +LD +T
Sbjct: 126 GAKALLEQLGLGK--RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183
Query: 158 WMEQELLKIN----SALIFVSHDRR 178
+ L +N + LI V+HD +
Sbjct: 184 KIADLLFSLNREHGTTLILVTHDLQ 208
Score = 42.5 bits (100), Expect = 3e-04
Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 39/190 (20%)
Query: 298 LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKR 356
LVVK GE I ++G +G+GK+TLL +L G G ++L G L + +
Sbjct: 31 LVVKR-------GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83
Query: 357 EDIDPDKSLASYLTGSSGDSLMV----------------RGE----SRHVAGYIKDFLFH 396
+ L + G S M+ RGE SR+ A + + L
Sbjct: 84 K-------LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGL 136
Query: 397 PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL---Q 453
+ L LSGGE+ R +AR + L DEPT +LD +T D + + L
Sbjct: 137 GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH 196
Query: 454 GTILI-VSHD 462
GT LI V+HD
Sbjct: 197 GTTLILVTHD 206
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 66.8 bits (163), Expect = 2e-11
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 30/161 (18%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----------LH 65
G + L ++ RI ++G NG+GKSTL + GI +P SG+V +
Sbjct: 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR 74
Query: 66 SSSR-LGYLEQNPDLSHFS-TISQYI----------DDTIKDTIEAPYSPYSLLKKFNLR 113
+ +G + QNPD FS T+ Q I ++T+ + S L L
Sbjct: 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVS------SALHMLGLE 128
Query: 114 E-QDRI-ENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
E +DR+ +LS G+ + VA+ ++ P +L+LDEPT LD
Sbjct: 129 ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
Score = 58.3 bits (141), Expect = 6e-09
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKREDI-----DPDKSLA 366
I ++GPNGAGK+TL + G +KP G + + G + I + R+ + +PD +
Sbjct: 33 IAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF 92
Query: 367 SYLT-----------GSSGDSLMVRGESR-HVAGYIKDFLFHPDQAHSLMKHLSGGEKMR 414
S G +++ R S H+ G +++ + HLSGGEK R
Sbjct: 93 SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLG-LEELR------DRVPHHLSGGEKKR 145
Query: 415 AIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVSHDRDFL 466
+A V+A L++DEPT LD E +DFL T++ +H D +
Sbjct: 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 66.0 bits (162), Expect = 3e-11
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 39/202 (19%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+LEA + + D+R++ S ++ GE + I GPNGAGKT+LL++L G +PD G +
Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60
Query: 344 -GTNLKIATIDQKRED-------------IDPDKSLASYLTGSSGDSLMVRGESRHVA-- 387
G I ++R++ I + + L E+ A
Sbjct: 61 QGEP-----IRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALA 115
Query: 388 -----GYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442
G+ ++ LS G++ R +AR+ I+DEP +D + +
Sbjct: 116 QVGLAGF----------EDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165
Query: 443 DFLERTITQ-LQ--GTILIVSH 461
LE + Q + G +++ +H
Sbjct: 166 ARLEALLAQHAEQGGMVILTTH 187
Score = 62.5 bits (153), Expect = 3e-10
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 35/157 (22%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSR---------- 69
L + ++ E + + G NG+GK++LL+I AG+ P +G V
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 70 ---LGYL---------EQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNL--REQ 115
LG+ +N L + + DD + EA L + L E
Sbjct: 76 LLYLGHQPGIKTELTALEN--LRFYQRLHGPGDD--EALWEA-------LAQVGLAGFED 124
Query: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+ LS GQ R VAL ++ ++R + ILDEP +D
Sbjct: 125 VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 65.7 bits (161), Expect = 3e-11
Identities = 55/187 (29%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 303 FSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL---KIATIDQKR-- 356
S + GE + +VGPNGAGK+TLL + G + P G I G L A + + R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 357 --EDIDPDKSLA--SYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEK 412
+ P ++ YLT D + + L D+ + LSGGE
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRT-EAVASALNEVAEALGLDDKLGRSVNQLSGGEW 132
Query: 413 MRAIVARVLAQ------PF-NFLIMDEPTNDLDF---ETLDFLERTITQLQGTILIVSHD 462
R +A V+ Q P L++DEP N LD LD L + Q +++ SHD
Sbjct: 133 QRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192
Query: 463 RDFLDRT 469
L+ T
Sbjct: 193 ---LNHT 196
Score = 51.1 bits (123), Expect = 8e-07
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 51/191 (26%)
Query: 24 VCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS-----------RLGY 72
+ ++ E + LVG NG+GKSTLL AG+ P SG++ Y
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 73 L--EQNP----DLSHFSTISQY-------IDDTIKDTIEAPYSPYSLLKKFNLREQDR-- 117
L +Q P + + T+ Q + + + EA L D+
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEA------------LGLDDKLG 121
Query: 118 --IENLSVGQTRCVALMKMLIS-RPDI------LILDEPTNHLDFRTIHWMEQELLKINS 168
+ LS G+ + V L +++ PDI L+LDEP N LD +++ L ++
Sbjct: 122 RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181
Query: 169 ALIFV---SHD 176
I V SHD
Sbjct: 182 QGIAVVMSSHD 192
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 65.5 bits (160), Expect = 3e-11
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 36/184 (19%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL---------HSSSRLG 71
LQ++ LS+ + + LVG GSGKSTL + G G + L HS R G
Sbjct: 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG 416
Query: 72 --YLEQNPDL---SHFSTIS---QYIDDTIKDTIEA----------PYSPYSLLKKFNLR 113
++Q+P + + + ++ ++ + +E P Y+ L
Sbjct: 417 VAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG----- 471
Query: 114 EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--NSALI 171
EQ NLSVGQ + +AL ++L+ P ILILDE T ++D T ++Q L + ++ L+
Sbjct: 472 EQG--NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLV 529
Query: 172 FVSH 175
++H
Sbjct: 530 VIAH 533
Score = 52.4 bits (126), Expect = 4e-07
Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 34/207 (16%)
Query: 279 SSGKLVLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD 337
SG++ + D ++ Y DD LV+++ +L + + +VG G+GK+TL LL G
Sbjct: 337 QSGRI--DIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT 394
Query: 338 CGFITL-GTNLK----------IATIDQKREDIDP----DKSLASYLTGS--SGDSLMVR 380
G I L G L +A + Q DP D LA+ G S + +
Sbjct: 395 EGEIRLDGRPLSSLSHSVLRQGVAMVQQ-----DPVVLADTFLANVTLGRDISEEQVWQA 449
Query: 381 GESRHVAGYIKDFLFHPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
E+ +A + PD ++ + +LS G+K +ARVL Q LI+DE T +
Sbjct: 450 LETVQLAELARSL---PDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN 506
Query: 437 LDFETLDFLERTITQL--QGTILIVSH 461
+D T +++ + + T+++++H
Sbjct: 507 IDSGTEQAIQQALAAVREHTTLVVIAH 533
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 65.4 bits (160), Expect = 4e-11
Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 24/177 (13%)
Query: 303 FSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDP- 361
F L + GE + I+GP+GAGK+TLL L+ G + P G +TL T +R P
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRR----PV 73
Query: 362 -----DKSLASYLTGSSG------DSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGG 410
+ +L S+LT + L + R I + D L LSGG
Sbjct: 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGG 133
Query: 411 EKMRAIVARVLA--QPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVSH 461
++ R +AR L QP L++DEP + LD E L + + + Q T+L+VSH
Sbjct: 134 QRQRVALARCLVREQP--ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188
Score = 53.0 bits (128), Expect = 2e-07
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 53/186 (28%)
Query: 26 LSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL----HSSSR-----LGYLEQN 76
L+++ ER+ ++G +G+GKSTLL + AG P SG++ L H+++ + L Q
Sbjct: 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79
Query: 77 PDL-SHFSTISQYI----------DDTIKDTIEAPYSPYSLLKKFNLREQDRIEN----- 120
+L SH T++Q I + ++ + A + Q IE+
Sbjct: 80 NNLFSHL-TVAQNIGLGLNPGLKLNAAQREKLHA------------IARQMGIEDLLARL 126
Query: 121 ---LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--------NSA 169
LS GQ + VAL + L+ IL+LDEP + LD + QE+L +
Sbjct: 127 PGQLSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRQEMLTLVSQVCQERQLT 182
Query: 170 LIFVSH 175
L+ VSH
Sbjct: 183 LLMVSH 188
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 65.5 bits (160), Expect = 4e-11
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 37/192 (19%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTT----LLKLLTGKIKPDCGFITL-GTNL------- 347
V+D +L + GE + +VG +G+GK+ +L LL + G I L G L
Sbjct: 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG 61
Query: 348 -KIATIDQK-REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFH-------PD 398
IATI Q R +P ++ ++ ++L G+ A + + PD
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAI----ETLRSLGKLSKQA---RALILEALEAVGLPD 114
Query: 399 QAHSLMKH---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQ 451
L K+ LSGG R ++A L FLI DEPT DLD L L + Q
Sbjct: 115 PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE-LRQ 173
Query: 452 LQGT-ILIVSHD 462
L GT IL+++HD
Sbjct: 174 LFGTGILLITHD 185
Score = 49.3 bits (118), Expect = 3e-06
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 32/187 (17%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ----------SGNVFLHSSSR 69
L+QD+ LS+K E + LVG +GSGKS G+ P G L S R
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 70 ---LGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYS--------LLKKFNLREQDRI 118
+ + QNP + F+ + + + +T+ + L+ L + + +
Sbjct: 61 GRHIATIMQNP-RTAFNPLFT-MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 119 EN-----LSVGQTRCVALMKMLISRPDILILDEPTNHLD----FRTIHWMEQELLKINSA 169
LS G + V + L+ P LI DEPT LD R + + + +
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG 178
Query: 170 LIFVSHD 176
++ ++HD
Sbjct: 179 ILLITHD 185
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 64.8 bits (158), Expect = 6e-11
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 38/160 (23%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS-----------SR 69
L DV +K E + ++G NGSGKST +++ G+ E +SG + + +
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82
Query: 70 LGYLEQNPDLSHFSTISQYIDDTIKDTI----EAPYSPYSLLKK-------------FNL 112
+G + QNPD +Q++ T++D + E P+ +K+ F
Sbjct: 83 IGMVFQNPD-------NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE 135
Query: 113 REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
RE R LS GQ + VA+ + RP I+ILDE T+ LD
Sbjct: 136 REPAR---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Score = 56.7 bits (137), Expect = 2e-08
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 284 VLEADKITKQYD---DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG- 339
++E +T +Y ++ + D S + GE + I+G NG+GK+T ++L+ G ++ + G
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 340 FITLGTNLKIATIDQKREDI-----DPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFL 394
I G L + R I +PD ++ + D + E++ + ++
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDN---QFVGATVEDDVAFGLENKGIP--HEEMK 118
Query: 395 FHPDQAHSLM----------KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDF 444
++A L+ LSGG+K R +A +A +I+DE T+ LD E
Sbjct: 119 ERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178
Query: 445 LERTIT----QLQGTILIVSHDRD 464
L +TI Q T++ ++HD D
Sbjct: 179 LIKTIKGIRDDYQMTVISITHDLD 202
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 64.5 bits (157), Expect = 8e-11
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS------- 68
GG + D L+I E ++G +GSGKST +++ + EP +G +F+ +
Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV 63
Query: 69 --------RLGYLEQNPDLSHFSTISQYIDDTIK----DTIEAPYSPYSLLKKFNLRE-Q 115
++G + Q L TI Q + E LLK L E +
Sbjct: 64 ELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE 123
Query: 116 DRI-ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NSAL 170
R + LS G + V L + L + PDIL++DE + LD M+ EL K+ +
Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 171 IFVSHD 176
+F++HD
Sbjct: 184 VFITHD 189
Score = 63.7 bits (155), Expect = 1e-10
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL-------- 347
+ V D L I GE I+G +G+GK+T +++L I+P G I + G N+
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVEL 65
Query: 348 ------KIATIDQK-----REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFH 396
KI + Q+ I + SL L G E + A + +
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQ------ERKEKALELLKLVGL 119
Query: 397 PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG-- 454
+ H LSGG + R +AR LA + L+MDE + LD D ++ + +LQ
Sbjct: 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 455 --TILIVSHDRD 464
TI+ ++HD D
Sbjct: 180 QKTIVFITHDLD 191
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 64.5 bits (157), Expect = 8e-11
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 26/212 (12%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L DK+ Y+ + +F L + GE + I+GP+GAGK+TLL L+ G I+P G I +
Sbjct: 1 LALDKVR--YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN 58
Query: 345 --TNLKIATIDQKREDIDPDKSLASYLTGSSGDSL---------MVRGESRHVAGY---I 390
++ +A + + + +L ++LT L + E A I
Sbjct: 59 DQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGI 118
Query: 391 KDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLE 446
D+L L + LSGG++ R +AR L +P L++DEP + LD E L ++
Sbjct: 119 ADYL------DRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVK 172
Query: 447 RTITQLQGTILIVSHDRDFLDRTVTSTIAAQN 478
+ ++ Q T+L+V+H +
Sbjct: 173 QLCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204
Score = 54.5 bits (131), Expect = 7e-08
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 51/203 (25%)
Query: 26 LSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLG----------YLEQ 75
L++ E + ++G +G+GKSTLL + AG EP SG++ ++ S G ++
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78
Query: 76 NPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRI----------------- 118
N +H T+ Q I + + K N +Q+++
Sbjct: 79 NNLFAHL-TVRQNIGLGLHPGL-----------KLNAEQQEKVVDAAQQVGIADYLDRLP 126
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS--------AL 170
E LS GQ + VAL + L+ IL+LDEP + LD + +E+L + L
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL----LREEMLALVKQLCSERQRTL 182
Query: 171 IFVSHDRRFLETLSTTTVWLDRG 193
+ V+H +++ + +G
Sbjct: 183 LMVTHHLSDARAIASQIAVVSQG 205
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 63.8 bits (156), Expect = 1e-10
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 286 EADKITKQYDD-RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
E D ++ YD+ R V+D S G+ + IVGP GAGK+TL+ LL P G I +
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 344 GTNLKIATIDQKREDI-----DP---DKSLASYL-TGSSG--DSLMVRGESRHVAGYIKD 392
GT+++ T R +I D ++S+ + G D M R A D
Sbjct: 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQA---HD 452
Query: 393 FLFHPDQAHSLM-----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
F+ + + + LSGGE+ R +AR L + LI+DE T+ LD ET E
Sbjct: 453 FIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET----EA 508
Query: 448 TITQLQGTILIVSHDR 463
+++ + + R
Sbjct: 509 ---KVKAALDELMKGR 521
Score = 47.6 bits (114), Expect = 9e-06
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 32/180 (17%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH---------SSSR-- 69
++DV KP + + +VG G+GKSTL+ + + +PQSG + + +S R
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410
Query: 70 LGYLEQNPDLSHFS-TISQYI--------DDTIKDTIEAPYSPYSLLKK---FNLREQDR 117
+ + Q+ L F+ +I I D+ ++ E + + +K ++ +R
Sbjct: 411 IAVVFQDAGL--FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGER 468
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDR 177
LS G+ + +A+ + L+ P ILILDE T+ LD T E K+ +AL + R
Sbjct: 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVET----EA---KVKAALDELMKGR 521
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 63.8 bits (156), Expect = 1e-10
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 274 LQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333
L SS ++E I+K +D + V+ + L I+ GE + ++GP+G GKTT+L+L+ G
Sbjct: 4 LNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63
Query: 334 IKPDCGFITL 343
PD G I L
Sbjct: 64 ETPDSGRIML 73
Score = 47.2 bits (113), Expect = 1e-05
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL----LKINSAL 170
Q + LS GQ + VA+ + ++++P +L+LDE + LD++ M+ EL K+
Sbjct: 139 QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITF 198
Query: 171 IFVSHDR 177
+FV+HD+
Sbjct: 199 VFVTHDQ 205
Score = 46.1 bits (110), Expect = 3e-05
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
P++ L IS + G +++ ++ L+I E + L+G +G GK+T+L++ AG P SG
Sbjct: 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69
Query: 61 NVFL 64
+ L
Sbjct: 70 RIML 73
Score = 31.5 bits (72), Expect = 0.75
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 405 KHLSGGEKMRAIVAR-VLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----TILIV 459
LSGG++ R +AR V+ +P L++DE + LD++ ++ + LQ T + V
Sbjct: 143 HQLSGGQQQRVAIARAVVNKP-KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFV 201
Query: 460 SHDR 463
+HD+
Sbjct: 202 THDQ 205
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 63.5 bits (155), Expect = 1e-10
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L IS G+++L+ + ++ E L+G NG+GKSTL+KI AGI P SG +
Sbjct: 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE 69
Query: 64 LHSSSR----------LG-YL-EQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN 111
+ + LG YL Q P L ++ + I + + LL
Sbjct: 70 IGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALG 129
Query: 112 --LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD-------FRTIHWMEQE 162
L +L V + V +++ L+ ILILDEPT L F I +E
Sbjct: 130 CQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI----RE 185
Query: 163 LLKINSALIFVSH 175
LL ++F+SH
Sbjct: 186 LLAQGVGIVFISH 198
Score = 55.8 bits (135), Expect = 3e-08
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 274 LQTTQSSGKLVLEADKITKQYDDRLVVK--DFSLRIHYGECIGIVGPNGAGKTTLLKLLT 331
+QT+ ++ +L A I+KQY V+K DF+L H GE ++G NGAGK+TL+K++
Sbjct: 1 MQTSDTTAPPLLCARSISKQYSGVEVLKGIDFTL--HAGEVHALLGGNGAGKSTLMKIIA 58
Query: 332 GKIKPDCGFITLG 344
G + PD G + +G
Sbjct: 59 GIVPPDSGTLEIG 71
Score = 47.7 bits (114), Expect = 9e-06
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 36/214 (16%)
Query: 277 TQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
Q++G VL + +T + ++ SL + GE +G+ G GAG+T L + L G
Sbjct: 261 QQAAGAPVLTVEDLTGEG-----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315
Query: 337 DCGFITLG----TNLKIATI----------DQKREDIDPDKSLA----SYLTGSSGDSLM 378
G I L L A D++ + D LA + G +
Sbjct: 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIK 375
Query: 379 VRGESRHVAGY-----IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEP 433
E+ + Y IK H +QA + LSGG + + ++A+ L LI+DEP
Sbjct: 376 PARENAVLERYRRALNIK--FNHAEQA---ARTLSGGNQQKVLIAKCLEASPQLLIVDEP 430
Query: 434 TNDLDFET---LDFLERTITQLQGTILIVSHDRD 464
T +D + L R+I +L +S D +
Sbjct: 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464
Score = 37.3 bits (87), Expect = 0.012
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 109 KFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT---IHWMEQELLK 165
KFN EQ LS G + V + K L + P +LI+DEPT +D I+ + + +
Sbjct: 393 KFNHAEQA-ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451
Query: 166 INSALIFVSHD 176
N A++F+S D
Sbjct: 452 QNVAVLFISSD 462
Score = 30.4 bits (69), Expect = 1.3
Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L ++ ++ + +++ L ++ E + L G G+G++ L + G+ + G +
Sbjct: 267 PVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM 321
Query: 64 L 64
L
Sbjct: 322 L 322
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 63.3 bits (154), Expect = 2e-10
Identities = 65/214 (30%), Positives = 89/214 (41%), Gaps = 35/214 (16%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKL----LTGKIKPDCG 339
+L AD + R +++D SLRI G ++G NGAGK+TLLK LTG P
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 340 FITLGTNLK---IATIDQKR----EDIDPDKSLASYLTGSSGDSLMVR-------GESRH 385
+T L +A ID R + P + ++ + L+ R G H
Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTH 120
Query: 386 VAGYIKDFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQ---------PFNFLIMDE 432
G I A +L+ LSGGE R ARVLAQ P +L++DE
Sbjct: 121 RDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 433 PTNDLDF----ETLDFLERTITQLQGTILIVSHD 462
PT LD LD + R +L + HD
Sbjct: 181 PTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214
Score = 44.0 bits (104), Expect = 1e-04
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAG-ITEPQSGN 61
+L DH+ +L+D+ L I+P L+G NG+GKSTLLK AG +T +
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPR 58
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 63.2 bits (154), Expect = 2e-10
Identities = 60/223 (26%), Positives = 88/223 (39%), Gaps = 67/223 (30%)
Query: 284 VLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+LE + Y D +K + + GE + ++GPNGAGK+TL G +KP G +
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 343 LGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYI----KDFLFHP- 397
+ K E I DK SL+ E R G + D LF P
Sbjct: 61 I-----------KGEPIKYDKK-----------SLL---EVRKTVGIVFQNPDDQLFAPT 95
Query: 398 ---DQAHSLMK------------------------------HLSGGEKMRAIVARVLAQP 424
D A + HLSGG+K R +A +LA
Sbjct: 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155
Query: 425 FNFLIMDEPTNDLDFETLDFLERTITQL--QG-TILIVSHDRD 464
+++DEPT+ LD + + + L +G TI+I +HD D
Sbjct: 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198
Score = 57.4 bits (139), Expect = 1e-08
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF------------- 63
G + L+ + + E + L+G NG+GKSTL GI +P SG V
Sbjct: 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSL 73
Query: 64 LHSSSRLGYLEQNPDLSHFS-TISQYI-----------DDTIKDTIEAPYSPYSLLKKFN 111
L +G + QNPD F+ T+ + + ++ K EA LK
Sbjct: 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEA-------LKAVG 126
Query: 112 LR--EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+ E +LS GQ + VA+ +L +P+I++LDEPT+ LD
Sbjct: 127 MEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 62.7 bits (153), Expect = 3e-10
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 24 VCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-----HSSSRLGYLEQNPD 78
+ L+IK E + L+G NGSGKSTL + G+ +PQSG + L + Y
Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDY------ 395
Query: 79 LSHFSTI-------SQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN-------LSVG 124
FS + Q + K A + L++ + + +E+ LS G
Sbjct: 396 RKLFSAVFTDFHLFDQLLGPEGKPANPALVEKW--LERLKMAHKLELEDGRISNLKLSKG 453
Query: 125 QTRCVALMKMLISRPDILILDEPTNHLD--FRTIHWMEQELL---KINSALIF-VSHD 176
Q + +AL+ L DIL+LDE D FR + Q LL + IF +SHD
Sbjct: 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFY--QVLLPLLQEMGKTIFAISHD 509
Score = 48.0 bits (115), Expect = 8e-06
Identities = 58/197 (29%), Positives = 84/197 (42%), Gaps = 17/197 (8%)
Query: 285 LEADKITKQYDDR-LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
LE +T Y D V +L I GE + ++G NG+GK+TL LLTG +P G I L
Sbjct: 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 344 -GTNLKIATIDQKREDIDP---DKSLASYLTGSSG---DSLMVRGESRHVAGYIKDFLFH 396
G + + R+ D L L G G + +V + + L
Sbjct: 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLK--MAHKLEL 440
Query: 397 PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD--FETLDFLERTITQLQG 454
D S +K LS G+K R + LA+ + L++DE D D F F + + LQ
Sbjct: 441 EDGRISNLK-LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE-FYQVLLPLLQE 498
Query: 455 ---TILIVSHDRDFLDR 468
TI +SHD +
Sbjct: 499 MGKTIFAISHDDHYFIH 515
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 61.9 bits (150), Expect = 5e-10
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
L +++T Y V ++ ++ I G I+GPNG GK+TLL+ L+ + P G + L
Sbjct: 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67
Query: 344 GTNLKIATIDQKREDIDPDKSLASYLTGSSGD----SLMVRGESRHVAGYIKDFLFHPDQ 399
G +++ + I L + + GD L+ RG H + + +
Sbjct: 68 GEHIQHYASKEVARRI----GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEA 123
Query: 400 AHSLMKH-------------LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF-ETLDFL 445
M+ LSGG++ RA +A VLAQ +++DEPT LD +D L
Sbjct: 124 VTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL 183
Query: 446 E--RTITQLQG-TILIVSHDRDFLDRTVTSTIA 475
E + + +G T+ V HD + R + IA
Sbjct: 184 ELLSELNREKGYTLAAVLHDLNQACRYASHLIA 216
Score = 45.4 bits (107), Expect = 5e-05
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 35/175 (20%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
LR + ++ G + +++ + I ++G NG GKSTLL+ + + P G+V+L
Sbjct: 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67
Query: 66 S-----------SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLRE 114
+ R+G L QN T+ + + P+ P L ++ +
Sbjct: 68 GEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARG-----RYPHQP--LFTRWRKED 120
Query: 115 QD-----------------RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
++ ++ LS GQ + + +L I++LDEPT LD
Sbjct: 121 EEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 61.7 bits (150), Expect = 5e-10
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+R+ ++ G + L +V + + +G NG+GKST +KI G P SG+V +
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 66 SSSRL----------GYL-EQNP---------DLSHFSTISQYIDDTIKDTIEAPYSPYS 105
L GYL E NP L + I +K +E
Sbjct: 63 GEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE------ 116
Query: 106 LLKKFNLR-EQ-DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+++ LR EQ +I LS G + V L + LI P +LILDEPT LD
Sbjct: 117 MIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
Score = 59.4 bits (144), Expect = 2e-09
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD------C 338
+ +TK Y + + + S G +G +GPNGAGK+T +K++TG + PD C
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 339 GFITLGTNLKIATIDQKREDIDP---DKSLASYLTGSSGDSLM-VRGESRHVAGYIKDFL 394
G L ++ + +P D + YL +G M + + V I+
Sbjct: 63 GEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG 122
Query: 395 FHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
P+Q H + LS G + R +A+ L LI+DEPT LD
Sbjct: 123 LRPEQ-HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 61.1 bits (149), Expect = 7e-10
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 21/157 (13%)
Query: 303 FSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATI--------- 352
S + GE +G+ G GAG++ L+KLL G + G + L G + I +
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 353 ----DQKREDIDPDKSLASYLTGSS-------GDSLMVRGESRHVAGYIKDFLFHPDQAH 401
D+K E I P S+A + S+ G + R E+ + +I+
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391
Query: 402 SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
L+ +LSGG + +AI+ R L++ +++DEPT +D
Sbjct: 392 QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
Score = 60.7 bits (148), Expect = 1e-09
Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 56/214 (26%)
Query: 2 SLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
S P L D I T G+ L D+ + + L+G NG+GKSTLLKI +G +P +G+
Sbjct: 1 SSPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Query: 62 VFLH------SSSRLG--------YLEQN--PDLS--------HFSTISQYIDDTIKDTI 97
+ + +S+ Y E + P+++ ++
Sbjct: 61 ILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVN------- 113
Query: 98 EAPYSPYSLLKKFNLREQDRI----------ENLSVGQTRCVALMKMLISRPDILILDEP 147
LL + + + + LS+GQ + V + K L ++ DEP
Sbjct: 114 ------RRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167
Query: 148 TNHLDFRTIHWMEQ------ELLKINSALIFVSH 175
T+ L R I EQ EL +++VSH
Sbjct: 168 TSSLSAREI---EQLFRVIRELRAEGRVILYVSH 198
Score = 58.4 bits (142), Expect = 5e-09
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L D I K + + D S G+ ++G NGAGK+TLLK+L+G +PD G I +
Sbjct: 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64
Query: 345 ------TNLK------IATIDQKREDIDPDKSLASYL--------TGSSGDSLMVRGESR 384
+ +A I Q+ + P+ ++A L G L+
Sbjct: 65 GQEMRFASTTAALAAGVAIIYQELHLV-PEMTVAENLYLGQLPHKGGIVNRRLLNYEARE 123
Query: 385 HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDF 444
+ D PD +K+LS G++ +A+ LA+ + DEPT+ L ++
Sbjct: 124 QLEHLGVD--IDPDTP---LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
Query: 445 LERTITQL--QGT-ILIVSH 461
L R I +L +G IL VSH
Sbjct: 179 LFRVIRELRAEGRVILYVSH 198
Score = 33.7 bits (78), Expect = 0.13
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 55/212 (25%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
LRLD + G L + + S++ E + L G G+G+S L+K+ G T +G V+L
Sbjct: 258 LRLDGLK----GPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLD 313
Query: 66 S----------SSRLGYL-----------------EQNPDLS---HFSTISQYIDDTIKD 95
+ R G + N ++S H I++ +
Sbjct: 314 GKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA 373
Query: 96 TIEAPYSPYSLLKKFNL----REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHL 151
+ ++ N+ REQ I NLS G + L + L +++LDEPT +
Sbjct: 374 ENADRF-----IRSLNIKTPSREQL-IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427
Query: 152 D-------FRTIHWMEQELLKINSALIFVSHD 176
D + I+ EL A++FVS D
Sbjct: 428 DVGAKHEIYNVIY----ELAAQGVAVLFVSSD 455
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 60.9 bits (148), Expect = 1e-09
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 21/198 (10%)
Query: 284 VLEADKITKQY--DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
++ ++ QY D +KD S I G+ IVG NG+GK+T+ KL+ G K G I
Sbjct: 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 342 TLGTNLKIATIDQK--REDI-----DPDK----SLASYLTGSSGDSLMVRGESRH--VAG 388
N I + + R+ I +PD S+ Y ++ V + H V+
Sbjct: 67 -FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSE 125
Query: 389 YIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
+K ++A LSGG+K R +A VLA + +I+DE T+ LD + L
Sbjct: 126 ALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL 184
Query: 449 ITQLQG----TILIVSHD 462
+ +++ TI+ ++HD
Sbjct: 185 VRKVKSEHNITIISITHD 202
Score = 60.5 bits (147), Expect = 1e-09
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 34/184 (18%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS-----------SR 69
L+DV +I + +VG NGSGKST+ K+ GI + +SG +F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 70 LGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPY--------SLLKKFNLREQDRIE-- 119
+G + QNPD +I +Y + +E PY LK+ ++ E+ E
Sbjct: 85 IGIVFQNPDNQFVGSIVKY---DVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPN 141
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLD-------FRTIHWMEQELLKINSALIF 172
LS GQ + VA+ +L P ++ILDE T+ LD + ++ E N +I
Sbjct: 142 ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH---NITIIS 198
Query: 173 VSHD 176
++HD
Sbjct: 199 ITHD 202
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 60.4 bits (146), Expect = 1e-09
Identities = 68/251 (27%), Positives = 120/251 (47%), Gaps = 50/251 (19%)
Query: 5 ILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
++RL+++S + G L+++ L IK E I ++G NGSGKSTL G+ PQ G V
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 64 LH-----SSSRL-------GYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSL-LKKF 110
+ S+L G + QNP+ +Q++ T+++ + + P +L L
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPE-------TQFVGRTVEEDL--AFGPENLCLPPI 111
Query: 111 NLREQ-DRI--------------ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
+R++ DR + LS GQ +CVAL +L P+ LI DE T+ LD +
Sbjct: 112 EIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 156 IHWMEQELLKIN---SALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNI 212
+ + + K++ +++++H+ LE L DR + +D+G E +N+
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHN---LEELHDA----DRIIV--MDRGKIVLEGEPENV 222
Query: 213 LQQEQIRYHNL 223
L ++ L
Sbjct: 223 LSDVSLQTLGL 233
Score = 38.0 bits (88), Expect = 0.007
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 288 DKITKQYDDRL-VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTN 346
+ ++ Y D +++ +L I GE IGI+G NG+GK+TL L G ++P G + +
Sbjct: 5 ENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVS-- 62
Query: 347 LKIATID-QKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHP-------D 398
I T D K + I + L + + + R +A ++ P D
Sbjct: 63 -GIDTGDFSKLQGI---RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD 118
Query: 399 QA----------HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
+A H K LSGG+ +A +L LI DE T+ LD ++ +
Sbjct: 119 RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER 178
Query: 449 ITQLQ---GTILIVSHD 462
I +L TI+ ++H+
Sbjct: 179 IKKLHEKGKTIVYITHN 195
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 60.5 bits (147), Expect = 1e-09
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 285 LEADKITKQY----DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG- 339
LE I + Y + V+K SL I+ GE + IVG +G+GK+TL+ +L KP G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 340 FITLGTNLKIATIDQ------KRED---IDPDKSLASYLTGSSGDSL------MVRGESR 384
+ G + +AT+D +RE I L S+LT + + + R +
Sbjct: 65 YRVAGQD--VATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRL 122
Query: 385 HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDF 444
A + L D+ LSGG++ R +AR L ++ DEPT LD + +
Sbjct: 123 LRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE 182
Query: 445 LERTITQL--QG-TILIVSHDRDFLDRTVTSTIAAQ 477
+ + QL +G T++IV+HD +AAQ
Sbjct: 183 VMAILHQLRDRGHTVIIVTHD---------PQVAAQ 209
Score = 50.5 bits (121), Expect = 1e-06
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 42/192 (21%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG-------NVFLHSSSRL 70
+++L+ + L I E + +VG +GSGKSTL+ I + +P SG +V + L
Sbjct: 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
Query: 71 GYLEQNPDLSHFSTISQYI----DDTIKDTIEAPYSPYSLLKKFNLREQ----------- 115
L + HF I Q T +E P + Y+ L++ +
Sbjct: 81 AQLRR----EHFGFIFQRYHLLSHLTAAQNVEVP-AVYAGLERKQRLLRAQELLQRLGLE 135
Query: 116 DRIE----NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL- 170
DR+E LS GQ + V++ + L++ +++ DEPT LD + +E++ I L
Sbjct: 136 DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS----GEEVMAILHQLR 191
Query: 171 ------IFVSHD 176
I V+HD
Sbjct: 192 DRGHTVIIVTHD 203
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 60.1 bits (146), Expect = 2e-09
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 38/187 (20%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-------------HSS 67
L +V + I+ E + L+G GSGKSTL++ G+ +P SG + +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 68 SRLGYLEQNPDLSHFS-TISQYI----------DDTIKDTIEAPYSPYSLLKKFNLREQD 116
++G + Q P+ F TI + I ++ I++ ++ + L + +++
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL-DYEDYKDKS 141
Query: 117 RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL--------KINS 168
E LS GQ R VA+ ++ P ILILDEPT LD + E+L + N
Sbjct: 142 PFE-LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG----RDEILNKIKELHKEYNM 196
Query: 169 ALIFVSH 175
+I VSH
Sbjct: 197 TIILVSH 203
Score = 54.3 bits (131), Expect = 9e-08
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 29/186 (15%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL------GTNLKIATID 353
+ + ++ I GE +G++G G+GK+TL++ L G +KP G I + +K++ I
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 354 QK-------------REDIDPDKSLASYLTGSSGDSLMVR-GESRHVAGYIKDFLFHPDQ 399
+K E I+ D + G S + + R + ++ G D+ + D+
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL--DYEDYKDK 140
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----T 455
+ LSGG+K R +A V+A LI+DEPT LD + D + I +L T
Sbjct: 141 SPF---ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT 197
Query: 456 ILIVSH 461
I++VSH
Sbjct: 198 IILVSH 203
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 59.7 bits (145), Expect = 2e-09
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT-LGTNL-KIATIDQK- 355
V+ + SL + GE + ++G +G GK+TL +LL G P G ++ G L K+ +K
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 356 -REDI-----------DPDKSLAS-------YLTGSSGDSLMVRGESRHVAGYIKDFLFH 396
R DI +P K++ +L SL + ++
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL-----SLDKAERLARASEMLRAVDLD 141
Query: 397 PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLERTITQL 452
LSGG+ R +AR LA LI+DE ++LD + L++ Q
Sbjct: 142 DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQF 201
Query: 453 QGTILIVSHD 462
L ++HD
Sbjct: 202 GTACLFITHD 211
Score = 58.9 bits (143), Expect = 4e-09
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 36/207 (17%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLS 80
L +V LS+K E + L+G +G GKSTL ++ G+ P GNV L L + +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEP-LAKLNRAQRKA 86
Query: 81 HFSTISQYIDD---------TIKDTIEAPYSPY-------------SLLKKFNLREQD-- 116
I D T+++ I P +L+ +L +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 117 -RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ--ELLK-----INS 168
R LS GQ + V L + L P +LILDE ++LD + LLK +
Sbjct: 147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD---LVLQAGVIRLLKKLQQQFGT 203
Query: 169 ALIFVSHDRRFLETLSTTTVWLDRGCL 195
A +F++HD R +E + +D G +
Sbjct: 204 ACLFITHDLRLVERFCQRVMVMDNGQI 230
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 59.8 bits (145), Expect = 2e-09
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 40/196 (20%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQK 355
R ++ SL G+ G++G NG+GK+TLLK+L P G I L Q
Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD--------AQP 74
Query: 356 REDIDPDKSLA---SYLTGS--SGDSLMVR-------------------GESRHVAGYIK 391
E K+ A +YL + + + VR + V I
Sbjct: 75 LESWS-SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLER 447
P AH L+ LSGGE+ RA +A ++AQ L++DEPT+ LD + L + R
Sbjct: 134 LVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 448 TITQLQG-TILIVSHD 462
++Q +G T++ V HD
Sbjct: 193 -LSQERGLTVIAVLHD 207
Score = 47.9 bits (114), Expect = 9e-06
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 39/178 (21%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERIC-LVGCNGSGKSTLLKIAAGITEPQSGNVF 63
L ++S + G LL + L+ P ++ L+G NGSGKSTLLK+ P G +
Sbjct: 11 TFALRNVSFRVPGRTLLHPLSLTF-PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69
Query: 64 LHS-----------SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNL 112
L + + ++ YL Q + T+ + + Y + L +F
Sbjct: 70 LDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELV-------AIGRYPWHGALGRFGA 122
Query: 113 REQDRIE-----------------NLSVGQTRCVALMKMLISRPD-ILILDEPTNHLD 152
+++++E +LS G+ R A + ML+++ L+LDEPT+ LD
Sbjct: 123 ADREKVEEAISLVGLKPLAHRLVDSLSGGE-RQRAWIAMLVAQDSRCLLLDEPTSALD 179
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 59.4 bits (144), Expect = 3e-09
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 25/164 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV-------------FLHSS 67
L+ + ++ P E + LVG +GSGKST+ + + +P G V +LH
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556
Query: 68 SRLGYLEQNPDL---SHFSTISQYIDDTIKDTIEAPYSP-------YSLLKKFNLREQDR 117
L + Q P L S I+ + DT + I A ++ ++
Sbjct: 557 VAL--VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ 161
LS GQ + +A+ + L+ +P +LILDE T+ LD +++
Sbjct: 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658
Score = 57.8 bits (140), Expect = 7e-09
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 32/189 (16%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL------- 347
D V+K + +H GE + +VGP+G+GK+T+ LL +P G + L G L
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552
Query: 348 ---KIATIDQK--------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFH 396
++A + Q+ RE+I A LT + + +M ++ + +I +F
Sbjct: 553 LHRQVALVGQEPVLFSGSVRENI------AYGLTDTPDEEIMAAAKAANAHDFIMEF--- 603
Query: 397 PDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL 452
P+ + + LSGG+K R +AR L + LI+DE T+ LD E L+ + ++
Sbjct: 604 PNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRA 663
Query: 453 QGTILIVSH 461
T+L+++H
Sbjct: 664 SRTVLLIAH 672
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 58.7 bits (142), Expect = 4e-09
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 284 VLEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD---- 337
++E ++ Y D + + D S I G ++G NG+GK+T+ KL+ G + PD
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 338 CGFITLGTNLKIATIDQKREDI-----DPDKSLASYLTGSSGDSLMVRGESRHVA----- 387
G L T+ RE + +PD ++ + GD + E+R V
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQ---FVGATVGDDVAFGLENRAVPRPEMI 121
Query: 388 GYIKDFLFH---PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FE 440
++D L D S +LSGG+K R +A +LA +I+DE T+ LD +
Sbjct: 122 KIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
Query: 441 TLDFLERTITQLQGTILIVSHDRD 464
L + + + T++ ++HD D
Sbjct: 182 ILKLIRKLKKKNNLTVISITHDID 205
Score = 51.3 bits (123), Expect = 6e-07
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 41/210 (19%)
Query: 1 MSLPILRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ 58
M I+ H+S T L D+ SI L+G NGSGKST+ K+ G+ P
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 59 SGN--------VFLHSSS------RLGYLEQNPDLSHFSTISQYIDDTIKDTI----EAP 100
+ L + + ++G + QNPD +Q++ T+ D + E
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPD-------NQFVGATVGDDVAFGLENR 113
Query: 101 YSPYSLLKKF---NLREQDRIE-------NLSVGQTRCVALMKMLISRPDILILDEPTNH 150
P + K L + ++ NLS GQ + VA+ +L P I+ILDE T+
Sbjct: 114 AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 151 LD----FRTIHWMEQELLKINSALIFVSHD 176
LD + + + + K N +I ++HD
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHD 203
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 58.7 bits (142), Expect = 4e-09
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 32/210 (15%)
Query: 284 VLEADKITKQYDDRL---------VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKI 334
+LE +T Y V+ + SL I GE +G++G +G GK+TL +LL G
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 335 KPDCGFITLG----TNLKIATIDQKREDI-----------DPDKSLASYLTGSSGDSLMV 379
KP G ++ L R D+ +P + + G L
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMT-VRQIIGEPLRHLTS 120
Query: 380 RGESRH---VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
ES +A + + A L + LSGG+ R +AR LA +++DE ++
Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
Query: 437 LDFETLDFLERTITQLQ---GT-ILIVSHD 462
LD + + +LQ GT L ++HD
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHD 210
Score = 57.9 bits (140), Expect = 8e-09
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 36/206 (17%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF--------LHSSSRLG 71
+L +V LSI+ E + L+G +G GKSTL ++ G+ +P G V L R
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 72 YLEQ------------NPDLSHFSTISQYIDDTIK-----DTIEAPYSPYSLLKKFNLRE 114
+ NP T+ Q I + ++ D E LL LR
Sbjct: 86 FRRDVQLVFQDSPSAVNPR----MTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 115 QD---RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS--- 168
+D LS GQ + + + + L +P +++LDE ++LD + + L K+
Sbjct: 142 EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201
Query: 169 -ALIFVSHDRRFLETLSTTTVWLDRG 193
A +F++HD R +++ +D+G
Sbjct: 202 TAYLFITHDLRLVQSFCQRVAVMDKG 227
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 59.0 bits (143), Expect = 4e-09
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 22/210 (10%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL-------TGKIKP 336
++E ++K + V+ + L I GE + I+GP+G+GK+TLL+ + +G +
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 337 DCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLM-----VRGESRHVAGYI- 390
D G + I Q+ + L +LT +++M VRG S+ A
Sbjct: 61 D-GLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL--ENVMFGPLRVRGASKEEAEKQA 117
Query: 391 KDFLFH---PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
++ L ++AH LSGG++ R +AR LA ++ DEPT+ LD E + +
Sbjct: 118 RELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK 177
Query: 448 TITQL--QG-TILIVSHDRDFLDRTVTSTI 474
+ L +G T++IV+H+ F ++ + I
Sbjct: 178 VMQDLAEEGMTMVIVTHEIGFAEKVASRLI 207
Score = 50.5 bits (121), Expect = 1e-06
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 41/215 (19%)
Query: 11 ISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL------ 64
+S G +L ++ L+I E + ++G +GSGKSTLL+ + E SG++ +
Sbjct: 7 VSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN 66
Query: 65 --HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTI-------------EAPYSPYSLLKK 109
RL E F T + + EA LL K
Sbjct: 67 DPKVDERLIRQEAGMVFQQFYLFPHL---TALENVMFGPLRVRGASKEEAEKQARELLAK 123
Query: 110 FNLREQDRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK 165
L E R + LS GQ + VA+ + L +P +++ DEPT+ LD + E+LK
Sbjct: 124 VGLAE--RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE----LRHEVLK 177
Query: 166 INSAL-------IFVSHDRRFLETLSTTTVWLDRG 193
+ L + V+H+ F E +++ +++D+G
Sbjct: 178 VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 58.8 bits (143), Expect = 4e-09
Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 54/215 (25%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGI------ 54
M +L + +I+ T GG+ L +V L ++ E + L G NG+GKSTL+K+ +G+
Sbjct: 1 MMEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY 60
Query: 55 ------------------TEPQSGNVFLHSS----SRLGYLEQNPDLSHFSTISQYIDDT 92
TE ++G +H L LE N L + T +D
Sbjct: 61 EGEIIFEGEELQASNIRDTE-RAGIAIIHQELALVKELSVLE-NIFLGNEITPGGIMDYD 118
Query: 93 IKDTIEAPYSPYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNH 150
+ A LL + L + NL +GQ + V + K L + +LILDEPT
Sbjct: 119 -AMYLRA----QKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS 173
Query: 151 LDFRTIHWMEQE---LLKI-------NSALIFVSH 175
L E E LL I A I++SH
Sbjct: 174 L-------TESETAVLLDIIRDLKAHGIACIYISH 201
Score = 53.4 bits (129), Expect = 2e-07
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 34/187 (18%)
Query: 281 GKLVLEADKITKQYD----DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
G+++LE +T +D V D S + GE +GI G GAG+T L++ L G
Sbjct: 256 GEVILEVRNLT-AWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314
Query: 337 DC-GFITL-GTNLKIATI-------------DQKREDIDPDKSLASYLTGSSGDSLMVRG 381
G I + G +KI D+KR+ I P + +T ++ D
Sbjct: 315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGS 374
Query: 382 ESRHVA--GYIKDFL-------FHPDQAHSLMKHLSGGEKMRAIVAR-VLAQPFNFLIMD 431
A I + + P+ A + LSGG + +A++A+ +L P LI+D
Sbjct: 375 RIDDAAELKTILESIQRLKVKTASPELA---IARLSGGNQQKAVLAKCLLLNP-KILILD 430
Query: 432 EPTNDLD 438
EPT +D
Sbjct: 431 EPTRGID 437
Score = 51.1 bits (123), Expect = 9e-07
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
+LE ITK + + + SL++ GE + + G NGAGK+TL+K+L+G
Sbjct: 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53
Score = 42.6 bits (101), Expect = 3e-04
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 117 RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
I LS G + L K L+ P ILILDEPT +D
Sbjct: 402 AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 58.9 bits (142), Expect = 4e-09
Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLK----LLTGKIKPDCG 339
++ +K+ K ++ + L IH+GE + ++GP+G+GK+TLL+ L+TG
Sbjct: 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH 63
Query: 340 FITLGTNLKIA---------------TIDQKREDIDPDKSLASYLTGSSGDSLMVRG--- 381
LG ++ I Q+ ++ L + L G+ G + R
Sbjct: 64 IELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFS 123
Query: 382 ------ESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTN 435
+ R + + + H AH + LSGG++ R +AR L Q ++ DEP
Sbjct: 124 WFTREQKQRALQALTRVGMVH--FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIA 181
Query: 436 DLDFET----LDFLERTITQLQG-TILIVSHDRDFLDRTVTSTIA 475
LD E+ +D L R I Q G T+++ H D+ R +A
Sbjct: 182 SLDPESARIVMDTL-RDINQNDGITVVVTLHQVDYALRYCERIVA 225
Score = 38.5 bits (89), Expect = 0.006
Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 45/239 (18%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGI----TEPQSG 60
I+R++ ++ T L V L+I E + L+G +GSGKSTLL+ +G+ S
Sbjct: 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH 63
Query: 61 NVFL---------------HSSSRLGYLEQNPDLSHFSTISQYI------DDTIKDTIEA 99
L S + GY+ Q +L + ++ + + T +
Sbjct: 64 IELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFS 123
Query: 100 PYSP------YSLLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHL 151
++ L + + R+ LS GQ + VA+ + L+ + +++ DEP L
Sbjct: 124 WFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 152 DFRTIHWMEQELLKINS--------ALIFVSHDRRFLE---TLSTTTVWLDRGCLHHLD 199
D + + L IN L V + R+ E L V+ D G D
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD-GSSQQFD 241
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 58.7 bits (142), Expect = 4e-09
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
M +L D +SA G I L +V L I E + L+G NG+GK+TLL G SG
Sbjct: 1 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG 60
Query: 61 NVFLHSS-------------------------SRLGYLEQNPDLSHFSTISQYIDDTIKD 95
+ SR+ +E+N + F + IK
Sbjct: 61 RIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT-VEENLAMGGFFAERDQFQERIKW 119
Query: 96 TIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD--- 152
Y L + + R R +S G+ + +A+ + L+S+P +L+LDEP+ L
Sbjct: 120 V-------YELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
Query: 153 ----FRTIHWMEQELLKI 166
F TI + ++ + I
Sbjct: 173 IQQIFDTIEQLREQGMTI 190
Score = 50.3 bits (120), Expect = 1e-06
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 31/203 (15%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
K++L DK++ Y + + SL I+ GE + ++G NGAGKTTLL L G + G I
Sbjct: 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 342 TLG----TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKD----- 392
T+ + A I RE + A G S M E+ + G+ +
Sbjct: 63 VFDGKDITDWQTAKI--MREAV------AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQ 114
Query: 393 ------FLFHP---DQAHSLMKHLSGGE-KMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442
+ P ++ +SGGE +M AI +++QP L++DEP+ L +
Sbjct: 115 ERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP-RLLLLDEPSLGLAPIII 173
Query: 443 DFLERTITQLQG---TILIVSHD 462
+ TI QL+ TI +V +
Sbjct: 174 QQIFDTIEQLREQGMTIFLVEQN 196
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 58.5 bits (141), Expect = 4e-09
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 44/214 (20%)
Query: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL------------ 330
L+L A + Y D+ VK+ +L + G ++GP+G GKTT L+ +
Sbjct: 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARV 62
Query: 331 TGKIKPDC------GFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSG---------D 375
TG+I D + ++ + QK +P +++ + +G D
Sbjct: 63 TGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP---NPFPTMSVFDNVVAGLKLAGIRDRD 119
Query: 376 SLMVRGESRHVAGY-----IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIM 430
LM E R + G +KD L P LSGG++ R +AR LA L+M
Sbjct: 120 HLMEVAE-RSLRGAALWDEVKDRLKTPATG------LSGGQQQRLCIARALAVEPEILLM 172
Query: 431 DEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
DEPT+ LD + +E +T L+ TI+IV+H+
Sbjct: 173 DEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
Score = 40.4 bits (94), Expect = 0.002
Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 39/219 (17%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKI------------- 50
+L ++ G +++V L ++ L+G +G GK+T L+
Sbjct: 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARV 62
Query: 51 -------AAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYID------------- 90
I P+ V + R+G + Q P+ F T+S + +
Sbjct: 63 TGRILLDGQDIYGPRVDPVAMRR--RVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDR 118
Query: 91 DTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNH 150
D + + E +L + R + LS GQ + + + + L P+IL++DEPT+
Sbjct: 119 DHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA 178
Query: 151 LDFRTIHWMEQEL--LKINSALIFVSHDRRFLETLSTTT 187
LD + +E + LK + +I V+H+ +S TT
Sbjct: 179 LDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTT 217
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 58.6 bits (142), Expect = 5e-09
Identities = 63/230 (27%), Positives = 99/230 (43%), Gaps = 39/230 (16%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL 79
+L ++ L IKP E I +VG +GSGKSTL K+ + PQ G V L L +
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV-LVDGVDLAIADPAWLR 530
Query: 80 SHFSTISQ---YIDDTIKDTIEA--PYSPYS-----------------LLKKFNLREQDR 117
+ Q +I+D I P +P+ L + +N ++
Sbjct: 531 RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--NSALIFVSH 175
NLS GQ + +A+ + L+ P ILI DE T+ LD+ + + + + +I +I ++H
Sbjct: 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH 650
Query: 176 DRRFLETLSTTTVWLDRGC--LHHLDQGFAYFESWKKNILQQEQIRYHNL 223
LST R C + L++G ES + L Q Y L
Sbjct: 651 ------RLSTV-----RACDRIIVLEKG-QIAESGRHEELLALQGLYARL 688
Score = 57.4 bits (139), Expect = 9e-09
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 16/179 (8%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKRE 357
V+ + +L I GE IGIVGP+G+GK+TL KLL P G + + G +L IA R
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531
Query: 358 DIDPDKSLASYLTGSSGDSL------MVRGESRHVAGY--IKDFLFHPDQAHS--LMKH- 406
+ + S D++ H A DF+ Q ++ + +
Sbjct: 532 QMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591
Query: 407 --LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-QG-TILIVSH 461
LSGG++ R +AR L LI DE T+ LD+E+ + R + ++ +G T++I++H
Sbjct: 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH 650
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 58.5 bits (142), Expect = 5e-09
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 48/203 (23%)
Query: 290 ITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKI 349
+TK Y D ++ KD +L IH GE + VGP+G GK+TLL+++ G IT G +L I
Sbjct: 9 VTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSG-DLFI 62
Query: 350 ATIDQKREDIDPDK--------SLASY--------------LTGSSGDSLMVRGESRHVA 387
+++ D+ P + S A Y L G+ + + R VA
Sbjct: 63 G--EKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVN--QVA 118
Query: 388 GYIKDFLFHPDQAHSLM---KHLSGGEKMRAIVARVL-AQPFNFLIMDEPTNDLDFETLD 443
++ AH L K LSGG++ R + R L A+P FL +DEP ++LD
Sbjct: 119 EVLQ-------LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPLSNLDAALRV 170
Query: 444 FLERTIT----QLQGTILIVSHD 462
+ I+ +L T++ V+HD
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHD 193
Score = 55.8 bits (135), Expect = 3e-08
Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 35/213 (16%)
Query: 8 LDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF---- 63
L +++ G + + +D+ L I E + VG +G GKSTLL++ AG+ + SG++F
Sbjct: 6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEK 65
Query: 64 ----LHSSSR-LGYLEQN----PDLSHFSTIS----------QYIDDTIKDTIEAPYSPY 104
+ + R +G + Q+ P LS +S + I+ + E
Sbjct: 66 RMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE------ 119
Query: 105 SLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL 164
+L+ +L ++ + + LS GQ + VA+ + L++ P + +LDEP ++LD M E+
Sbjct: 120 -VLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
Query: 165 K----INSALIFVSHDRRFLETLSTTTVWLDRG 193
+ + +I+V+HD+ TL+ V LD G
Sbjct: 178 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 58.4 bits (141), Expect = 6e-09
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 29/218 (13%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L + K+Y + V+K SL+ + G+ I I+G +G+GK+T L+ + KP G I +
Sbjct: 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65
Query: 345 T-----------NLKIATIDQKR------EDIDPDKSLASYLTGSSG---DSLMVRGESR 384
LK+A +Q R + +L S++T + V G S+
Sbjct: 66 GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 125
Query: 385 HVAG-----YIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF 439
A Y+ HLSGG++ R +AR LA L+ DEPT+ LD
Sbjct: 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP 185
Query: 440 ETLDFLERTITQLQ---GTILIVSHDRDFLDRTVTSTI 474
E + + R + QL T+++V+H+ F R V+S +
Sbjct: 186 ELVGEVLRIMQQLAEEGKTMVVVTHEMGFA-RHVSSHV 222
Score = 54.2 bits (130), Expect = 1e-07
Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 35/235 (14%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS-------- 67
G ++L+ V L + I ++G +GSGKST L+ + +P G++ ++
Sbjct: 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDK 75
Query: 68 ----------------SRLGYLEQNPDL-SHFSTISQYIDDTIK----DTIEAPYSPYSL 106
+RL + Q+ +L SH + + ++ I+ EA
Sbjct: 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKY 135
Query: 107 LKKFNLREQDRIE---NLSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWME 160
L K + E+ + + +LS GQ + V++ + L P++L+ DEPT+ LD + +
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Query: 161 QELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQ 215
Q+L + ++ V+H+ F +S+ ++L +G + F + + LQQ
Sbjct: 196 QQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQ 250
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 58.2 bits (141), Expect = 6e-09
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 28/190 (14%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQ 354
+R + + SL + G+ I+GP+G GKTTLL+L+ G+I PD G I G N I + +
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN--IPAMSR 76
Query: 355 KREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQA-HS--LMK------ 405
R + + +G+ + V +VA +++ P HS +MK
Sbjct: 77 SRLYTVRKRMSMLFQSGALFTDMNV---FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL 133
Query: 406 ---------HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG-- 454
LSGG RA +AR +A + ++ DEP D T+ L + I++L
Sbjct: 134 RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL 193
Query: 455 --TILIVSHD 462
T ++VSHD
Sbjct: 194 GVTCVVVSHD 203
Score = 39.0 bits (91), Expect = 0.004
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 11 ISATIGGIDLLQDVCLSIKPKERI-CLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS-- 67
+S T G + ++ L++ P+ +I ++G +G GK+TLL++ G P G +
Sbjct: 13 VSFTRGNRCIFDNISLTV-PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENI 71
Query: 68 ---SRLGYLEQNPDLSH-FSTISQYIDDTIKDTIEAPYS-----PYSLLKK--------F 110
SR +S F + + + D + D + P P LL
Sbjct: 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV 131
Query: 111 NLREQDRI--ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS 168
LR ++ LS G R AL + + PD+++ DEP D T+ + + + ++NS
Sbjct: 132 GLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS 191
Query: 169 AL----IFVSHD 176
AL + VSHD
Sbjct: 192 ALGVTCVVVSHD 203
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 58.0 bits (141), Expect = 7e-09
Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 36/174 (20%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSG 374
I G +GAGKT+L+ ++G +P G I L + +K + P+K Y
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDA--EKGICLPPEKRRIGY------ 80
Query: 375 DSLMVRGESR-----HVAGYIKDFLFHPDQAH-----------SLMKH----LSGGEKMR 414
V ++R V G ++ + A L+ LSGGEK R
Sbjct: 81 ----VFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQR 136
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLERTITQLQGTILIVSHDRD 464
+ R L L+MDEP LD E L +LER ++ IL VSH D
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD 190
Score = 46.4 bits (111), Expect = 2e-05
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 71/202 (35%)
Query: 21 LQDVCLSIK---PKERICLV-GCNGSGKSTLLKIAAGITEPQSGNVFLHSSS-------- 68
L D+CL++ P + I + G +G+GK++L+ +G+T PQ G + L+
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69
Query: 69 -------RLGYLEQ-------------------NPDLSHFSTISQYIDDTIKDTIEAPYS 102
R+GY+ Q ++ F I + IE
Sbjct: 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG------IEP--- 120
Query: 103 PYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF-RTIHWMEQ 161
LL ++ LS G+ + VA+ + L++ P++L++DEP LD R ++
Sbjct: 121 ---LLDRYPGS-------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR-----KR 165
Query: 162 ELL--------KINSALIFVSH 175
ELL +IN +++VSH
Sbjct: 166 ELLPYLERLAREINIPILYVSH 187
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 57.9 bits (141), Expect = 8e-09
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 50/251 (19%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN-----VFLHSSS--- 68
G L + ++ +RI LVG +G+GK++LL G P G+ + L
Sbjct: 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPES 420
Query: 69 ---RLGYLEQNPDLSHFSTISQYI--------DDTIKDTIEAPYSP---YSLLKKFNLRE 114
L ++ QNP L H T+ + D+ ++ +E + L + +
Sbjct: 421 WRKHLSWVGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVS 174
D+ LSVGQ + +AL + L+ +L+LDEPT LD + EQ + AL S
Sbjct: 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS----EQ---LVMQALNAAS 532
Query: 175 HDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQI----RYHNLKKKNEAE 230
+ TL T H L+ + + W ++Q QI Y L +
Sbjct: 533 RRQ---TTLMVT---------HQLEDLAQWDQIW---VMQDGQIVQQGDYAELSQAGGLF 577
Query: 231 KEWLRYGVTAR 241
L +
Sbjct: 578 ATLLAHRQEEI 588
Score = 57.9 bits (141), Expect = 8e-09
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 44/224 (19%)
Query: 275 QTTQSSGKLVLEA-DKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333
+ S+ + +EA D D + + + + G+ I +VGP+GAGKT+LL L G
Sbjct: 340 KELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG- 398
Query: 334 IKPDCGFITLGTNLKIATIDQKREDIDPD---KSLA------SYLTGSSGDSLMVRGESR 384
F+ +LKI I+ + ++DP+ K L+ G+ D++++
Sbjct: 399 ------FLPYQGSLKINGIELR--ELDPESWRKHLSWVGQNPQLPHGTLRDNVLL---GN 447
Query: 385 HVAG-----------YIKDFLFHPDQAHSL-------MKHLSGGEKMRAIVARVLAQPFN 426
A ++ +FL P L LS G+ R +AR L QP
Sbjct: 448 PDASDEQLQQALENAWVSEFL--PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505
Query: 427 FLIMDEPTNDLDFETLDFLERTITQL--QGTILIVSHDRDFLDR 468
L++DEPT LD + + + + + T L+V+H + L +
Sbjct: 506 LLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ 549
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 57.6 bits (139), Expect = 9e-09
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS-------RLGYL 73
L D+ ++ P + G NG GKS+LL++ AGI +P SGN++ + + Y+
Sbjct: 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYI 75
Query: 74 EQNPDLSHFSTISQYID--DTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVAL 131
N L T+ + + I ++ E Y+ K +L ++ + +LS G + VA+
Sbjct: 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-KCYSLSSGMQKIVAI 134
Query: 132 MKMLISRPDILILDEPTNHLD 152
+++ + D+ +LDE +L
Sbjct: 135 ARLIACQSDLWLLDEVETNLS 155
Score = 31.4 bits (71), Expect = 0.66
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSG 374
I G NG GK++LL+++ G ++P G I N I I K +L L +
Sbjct: 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYY-KNCNINNI-AKPYCTYIGHNLGLKLEMTVF 88
Query: 375 DSLMVRGESRHVAGYIKDFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIM 430
++L E + A + H + H L+ LS G + +AR++A + ++
Sbjct: 89 ENLKFWSEIYNSAETL-YAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147
Query: 431 DEPTNDLDFETLDFLERTI---TQLQGTILIVSH 461
DE +L E D L I G +L+ SH
Sbjct: 148 DEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 57.6 bits (139), Expect = 9e-09
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 21/206 (10%)
Query: 284 VLEADKITKQYD--DRLV--VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
+++ ITK + + + + + SL + G+ G++G +GAGK+TL++ + +P G
Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 340 FITLG----TNLKIATIDQKREDIDPDKSLASYLT-----GSSGDSLMVRGESR-HVAGY 389
+ + T L + + + R I + L+ G+ L + + +
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK 120
Query: 390 IKDFLFH---PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----L 442
+ + L D+ S +LSGG+K R +AR LA L+ DE T+ LD T L
Sbjct: 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180
Query: 443 DFLERTITQLQGTILIVSHDRDFLDR 468
+ L+ +L TIL+++H+ D + R
Sbjct: 181 ELLKEINRRLGLTILLITHEMDVVKR 206
Score = 53.0 bits (127), Expect = 2e-07
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 18 IDLLQDVCLSIKPKERIC-LVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQN 76
I L +V L + P +I ++G +G+GKSTL++ + P SG+V + L L N
Sbjct: 18 IQALNNVSLHV-PAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIV-DGQDLTTL-SN 74
Query: 77 PDLS-----------HFSTISQY-----------IDDTIKDTIEAPYSPYSLLKKFNLRE 114
+L+ HF+ +S +D+T KD I+ + L +
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH 134
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL 170
NLS GQ + VA+ + L S P +L+ DE T+ LD T + + L +IN L
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 57.3 bits (138), Expect = 1e-08
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 58/250 (23%)
Query: 246 VRRVKELHEIQK----QLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVK 301
V R+KE E +K Q+QE G++ + + D LV++
Sbjct: 1253 VERLKEYSETEKEAPWQIQETAPP---------SGWPPRGRVEFRNYCLRYREDLDLVLR 1303
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTL-------LKLLTGKIKPDCGFITLGTNL------- 347
++ IH GE +GIVG GAGK++L + G+I D G N+
Sbjct: 1304 HINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIID------GLNIAKIGLHD 1357
Query: 348 ---KIATIDQK--------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIK---DF 393
KI I Q R ++DP + Y S + + E H+ ++ D
Sbjct: 1358 LRFKITIIPQDPVLFSGSLRMNLDP---FSQY----SDEEVWWALELAHLKTFVSALPDK 1410
Query: 394 LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI-TQL 452
L H + ++LS G++ +AR L + L++DE T +D ET + ++ TI TQ
Sbjct: 1411 LDH--ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468
Query: 453 QG-TILIVSH 461
+ T+L ++H
Sbjct: 1469 EDCTVLTIAH 1478
Score = 54.2 bits (130), Expect = 9e-08
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 31/165 (18%)
Query: 17 GIDL-LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----------LH 65
+DL L+ + ++I E++ +VG G+GKS+L I E G + LH
Sbjct: 1297 DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH 1356
Query: 66 S-SSRLGYLEQNPDL------SHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRI 118
++ + Q+P L + SQY D+ + +E + LK F D++
Sbjct: 1357 DLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAH-----LKTFVSALPDKL 1411
Query: 119 --------ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
ENLSVGQ + V L + L+ + IL+LDE T +D T
Sbjct: 1412 DHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456
Score = 34.9 bits (80), Expect = 0.056
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLS 80
L + SI + +VG G GKS+LL + G+V + S + Y+ Q +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--VAYVPQQAWIQ 711
Query: 81 HFSTISQYI------DDTIKDTIEAPYSPYSLLKKFN-LREQDRIE------NLSVGQTR 127
+ S + + + +EA +LL L DR E NLS GQ +
Sbjct: 712 NDSLRENILFGKALNEKYYQQVLEA----CALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 767
Query: 128 CVALMKMLISRPDILILDEPTNHLD 152
V+L + + S DI + D+P + +D
Sbjct: 768 RVSLARAVYSNADIYLFDDPLSAVD 792
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 56.3 bits (136), Expect = 2e-08
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 21/156 (13%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-----------HS 66
++ ++ + +++ + + ++G NGSGKSTL K+ AG+ EP SG + + +
Sbjct: 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYR 85
Query: 67 SSRLGYLEQNP--DLSHFSTISQYID-----DTIKDTIEAPYSPYSLLKKFNLREQDRI- 118
S R+ + Q+P L+ ISQ +D +T + + L++ L
Sbjct: 86 SQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY 145
Query: 119 --ENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
L+ GQ + + L + LI RP ++I DE LD
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
Score = 39.4 bits (92), Expect = 0.002
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
VK S + G+ + I+G NG+GK+TL K+L G I+P G +
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL 70
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 56.1 bits (135), Expect = 3e-08
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS----RLGYLEQ 75
LLQ + + + L G NG+GK+TLLK+ AG+ P+ G + S Y +Q
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 76 NPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN-----------LSVG 124
+ H S I+ Y+ T+++ Y + + E R+ + LS G
Sbjct: 76 LCFVGHRSGINPYL--TLREN--CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSG 131
Query: 125 QTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME---QELLKINSALIFVSHDR 177
Q R VAL+++ +S+ + +LDEP LD ++ + QE A++ SH
Sbjct: 132 QKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187
Score = 44.6 bits (105), Expect = 8e-05
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLK--IA 350
Y D+ +++ S + G + + G NGAGKTTLLKL+ G + P+ G I ++K +
Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLC 70
Query: 351 TIDQK------REDIDPDKSLASY----LTGSSGDSLMVRGESRHVAGYIKDFLFHPDQA 400
T ++ R I+P +L + S G + ++ D+
Sbjct: 71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY------- 123
Query: 401 HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ------G 454
LS G+K + + R+ ++DEP LD + L IT++Q G
Sbjct: 124 --PCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS---LLTIITKIQEHRAKGG 178
Query: 455 TILIVSHDRDFLDRT 469
+L+ SH L++
Sbjct: 179 AVLLTSHQDLPLNKA 193
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 55.9 bits (135), Expect = 3e-08
Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 37/160 (23%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS------------SS 68
L DV L +K E + ++G NGSGKST+ K + P G V++ +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85
Query: 69 RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSL--------------LKKFNLRE 114
+ G + QNPD +TI + + + P +L LKK + E
Sbjct: 86 KAGMVFQNPDNQIVATIVEE---------DVAFGPENLGIPPEEIRERVDESLKKVGMYE 136
Query: 115 QDRIEN--LSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
R LS GQ + VA+ +L RP+ +I DEPT LD
Sbjct: 137 YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Score = 38.1 bits (89), Expect = 0.006
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 284 VLEADKITKQYDD------RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD 337
+++ ++ +Y+ +L + D +L + GE + I+G NG+GK+T+ K + + P
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 338 CG 339
G
Sbjct: 64 EG 65
Score = 34.7 bits (80), Expect = 0.075
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----TILIVSH 461
LSGG+K R +A +LA +I DEPT LD + TI +L TI++++H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 56.0 bits (135), Expect = 3e-08
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 52/222 (23%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGI---------- 54
+L + I T GG+ L + L ++P E + L G NG+GKSTL+KI +G+
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 55 --------------TEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAP 100
TE ++G V +H L P+LS I + T+ A
Sbjct: 61 YWSGSPLKASNIRDTE-RAGIVIIHQE-----LTLVPELSVAENIFLGNEITLPGGRMA- 113
Query: 101 YSPYSLLKKFNLREQDRIE---------NLSVGQTRCVALMKMLISRPDILILDEPTNHL 151
L+ NL + +++ + GQ + V + K L + +LILDEP++ L
Sbjct: 114 -YNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
Query: 152 DFRTIHWMEQELLKI-------NSALIFVSHDRRFLETLSTT 186
+ + LL I A +++SH ++ + T
Sbjct: 173 TEKET----EILLDIIRDLKAHGVACVYISHKLNEVKAVCDT 210
Score = 54.8 bits (132), Expect = 6e-08
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 32/208 (15%)
Query: 281 GKLVLEADKITKQYDD---RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD 337
G ++LEA +T R V D S + GE +G+ G GAG+T L++ L G
Sbjct: 254 GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK 313
Query: 338 C-GFITL-GTNLKIATI-------------DQKREDIDPDKSLASYLTGSSGDSLMVRG- 381
G + + G + I D+KR I P + +T S S +
Sbjct: 314 FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMR 373
Query: 382 -----ESRHVAGYIKDF---LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEP 433
E + + I+ P + LSGG + +A++A++L LI+DEP
Sbjct: 374 IDAAAELQIIGSAIQRLKVKTASPFLP---IGRLSGGNQQKAVLAKMLLTNPRVLILDEP 430
Query: 434 TNDLDFETLDFLERTITQL--QGTILIV 459
T +D + + I QL +G +IV
Sbjct: 431 TRGVDVGAKYEIYKLINQLAQEGVAIIV 458
Score = 53.3 bits (128), Expect = 2e-07
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 38/198 (19%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP----DCG 339
+LE I K + + L + GEC+G+ G NGAGK+TL+K+L+G + P D
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGE 59
Query: 340 FITLGTNLKIATI-DQKREDID---------PDKSLASYLTGSSGDSLMVRGESRHVAGY 389
G+ LK + I D +R I P+ S+A + G+ + + G
Sbjct: 60 IYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIF--LGNEITLPGGRMAYNAM 117
Query: 390 IKDFLFHPDQAHSLMKHLS--------------GGEKMRAIVARVLAQPFNFLIMDEPTN 435
+A +L++ L GG++ +A+ L + LI+DEP++
Sbjct: 118 YL-------RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSS 170
Query: 436 DLDFETLDFLERTITQLQ 453
L + + L I L+
Sbjct: 171 SLTEKETEILLDIIRDLK 188
Score = 37.9 bits (88), Expect = 0.008
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
I LS G + L KML++ P +LILDEPT +D
Sbjct: 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 55.5 bits (134), Expect = 4e-08
Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 14/192 (7%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
+ ITK++ V+ + +L I G + ++GP+G GKTT+L+L+ G KP G I +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 344 GTNLKIATIDQKREDIDPDKSLASYLTGSSGDS----LMVRGESR-HVAGYIKDFLFHPD 398
G ++ +I Q+R+ +S A + S G++ L + G + +K+ L D
Sbjct: 67 GEDVTHRSI-QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD 125
Query: 399 QA---HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG- 454
A + +SGG++ R +AR L L+ DEP ++LD + I +LQ
Sbjct: 126 LAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ 185
Query: 455 ---TILIVSHDR 463
T L V+HD+
Sbjct: 186 FNITSLYVTHDQ 197
Score = 53.2 bits (128), Expect = 2e-07
Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 33/198 (16%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+ L +I+ G ++ ++ L+IK + L+G +G GK+T+L++ AG+ +P G +F+
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 66 SSSRLGYLEQNPDLSH-FSTISQYIDDTIKDTIEAPYSPYSL----LKKFNLREQ----- 115
Q D+ F + + + ++ + + Y L + K +++
Sbjct: 67 GEDVTHRSIQQRDICMVFQSYALFPHMSLGENVG-----YGLKMLGVPKEERKQRVKEAL 121
Query: 116 ---------DR-IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME----- 160
DR ++ +S GQ + VAL + LI +P +L+ DEP ++LD M
Sbjct: 122 ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRE 181
Query: 161 -QELLKINSALIFVSHDR 177
Q+ I S ++V+HD+
Sbjct: 182 LQQQFNITS--LYVTHDQ 197
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 55.4 bits (133), Expect = 4e-08
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 30/197 (15%)
Query: 293 QYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI----------- 341
+Y D V+K +L G+VG NG GK+TL L+G ++P G +
Sbjct: 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK 69
Query: 342 --TLGTNLKIATIDQKRE------DIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDF 393
L ++AT+ Q E DID D + + G + R + + F
Sbjct: 70 RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF 129
Query: 394 LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTI 449
P Q LS G+K R +A L +L++DEPT LD + + + R +
Sbjct: 130 RHQPIQC------LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
Query: 450 TQLQGTILIVSHDRDFL 466
Q ++I SHD D +
Sbjct: 184 AQ-GNHVIISSHDIDLI 199
Score = 49.6 bits (118), Expect = 3e-06
Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 47/209 (22%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS----SRLGYLE- 74
+L+ + L LVG NG GKSTL +G+ PQ G V S+ G L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 75 --------QNPDLSHFST-------------------ISQYIDDTIKDTIEAPYSPYSLL 107
Q+P+ F T I++ +D+ + +L+
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEAL-----------TLV 124
Query: 108 KKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI- 166
+ R Q I+ LS GQ + VA+ L+ + L+LDEPT LD M + +I
Sbjct: 125 DAQHFRHQP-IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
Query: 167 --NSALIFVSHDRRFLETLSTTTVWLDRG 193
+ +I SHD + +S L +G
Sbjct: 184 AQGNHVIISSHDIDLIYEISDAVYVLRQG 212
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 54.9 bits (132), Expect = 6e-08
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 36/215 (16%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT---------LGTNLKIA 350
++D S + G +VG NG+GK+TL K L G ++ G I+ L NL +A
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL-VA 81
Query: 351 TIDQKREDID---PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQA---HSLM 404
+ Q E++D P + G G +R + + L D H +
Sbjct: 82 YVPQS-EEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI 140
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET---LDFLERTITQLQGTILIVSH 461
LSGG+K R +AR +AQ +++DEP +D +T + L R + T+L+ +H
Sbjct: 141 GELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
Query: 462 D----RDFLDRTVT------------STIAAQNIE 480
+ +F D TV +T A+N+E
Sbjct: 201 NLGSVTEFCDYTVMVKGTVLASGPTETTFTAENLE 235
Score = 44.1 bits (104), Expect = 9e-05
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 1 MSLPILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
M + ++ ++ T G L+D ++ LVG NGSGKSTL K G S
Sbjct: 2 MQQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 60 GNVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIE-----APYSPYSLLKKFNLRE 114
G + + L++N L + S+ +D + +E Y L++ R+
Sbjct: 62 GKISILGQPTRQALQKN--LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD 119
Query: 115 QDRIE-----------------NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
+ + LS GQ + V L + + + +++LDEP +D +T
Sbjct: 120 RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 54.3 bits (131), Expect = 1e-07
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKT----TLLKLLTGKIKPDCG 339
+E I Q + +V SL + G + +VG +G+GK+ L +L ++ G
Sbjct: 4 QIELRNIALQ-AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAG 62
Query: 340 FITL-GTNL--------KIATIDQK-REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGY 389
+ L G + KIATI Q R +P ++ ++ + ++ + G+ A
Sbjct: 63 RVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTH----ARETCLALGKPADDATL 118
Query: 390 IK--DFLFHPDQAHSLMKH---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----E 440
+ + + A L + +SGG R ++A L F+I DEPT DLD
Sbjct: 119 TAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQAR 178
Query: 441 TLDFLERTITQLQGT-ILIVSHD 462
LD LE I Q + +L+V+HD
Sbjct: 179 ILDLLES-IVQKRALGMLLVTHD 200
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 54.0 bits (130), Expect = 1e-07
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 43/191 (22%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL---------------H 65
+ DV + + +VG GSGKSTL++ + +P +G V +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 66 SSSRLGYLEQNPDLSHFSTISQYIDDTIKDTI------------EAPYSPYSLLKKF--- 110
R+G + Q P+ SQ +DT++ I E + LL
Sbjct: 83 VRKRIGMVFQFPE-------SQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFS 135
Query: 111 -NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD----FRTIHWMEQELLK 165
++ Q + +S GQ R +A++ +L PDI++LDEPT LD + + ++
Sbjct: 136 RDVMSQSPFQ-MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 166 INSALIFVSHD 176
N +I VSHD
Sbjct: 195 ENKTIILVSHD 205
Score = 44.0 bits (104), Expect = 1e-04
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 26/188 (13%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDI 359
+ D + G+ IVG G+GK+TL++ + +KP G +T+ ++ I T K + I
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD-DITI-THKTKDKYI 80
Query: 360 DPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQ----AHSLMKHL-------- 407
P + + L R + K+F + D+ AH L+ L
Sbjct: 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMS 140
Query: 408 ------SGGEKMRAI-VARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ----GTI 456
SGG+ MR I + +LA + +++DEPT LD ++ + R + LQ TI
Sbjct: 141 QSPFQMSGGQ-MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTI 199
Query: 457 LIVSHDRD 464
++VSHD +
Sbjct: 200 ILVSHDMN 207
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 54.0 bits (130), Expect = 1e-07
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 42/167 (25%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS-----------SS 68
+L + I P E++ +VG G+GKS++L I E + G + +
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313
Query: 69 RLGYLEQNPDLSHFS-TISQYIDDTIKDTIEAPYSPYS------LLKKFNLREQDRI--- 118
LG + Q P L FS T+ +D P++ ++ L++ +L++ R
Sbjct: 1314 VLGIIPQAPVL--FSGTVRFNLD---------PFNEHNDADLWESLERAHLKDVIRRNSL 1362
Query: 119 ----------ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
EN SVGQ + ++L + L+ R IL+LDE T +D RT
Sbjct: 1363 GLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
Score = 37.0 bits (86), Expect = 0.013
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 30/151 (19%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS-GNVFLHSSSRLGYLEQNPDL 79
L ++ L + + +VG G GK++L+ G P+S +V + + + Y+ Q
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT--VAYVPQ---- 686
Query: 80 SHFSTISQYIDDTIKDTI--EAPYSP---------------YSLLKKFNLRE-QDRIENL 121
+S + T++D I +P+ P LL +L E +R N+
Sbjct: 687 -----VSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741
Query: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLD 152
S GQ + V++ + + S D+ I D+P + LD
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Score = 35.5 bits (82), Expect = 0.046
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 33/160 (20%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP--DCGFITLGTNLKIATID 353
+R + + +L + G + IVG G GKT+L+ + G++ P D + GT +A +
Sbjct: 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT---VAYVP 685
Query: 354 Q--------KREDIDPDKSLASYLTGSSGDSLMVRGESR-HVAGYIKDFLFHPDQAHSLM 404
Q R++I L GS D R E V D P L
Sbjct: 686 QVSWIFNATVRDNI---------LFGSPFDP--ERYERAIDVTALQHDLDLLP--GGDLT 732
Query: 405 K------HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
+ ++SGG+K R +AR + + I D+P + LD
Sbjct: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Score = 31.6 bits (72), Expect = 0.56
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
V+ S I E +GIVG GAGK+++L L ++ + G I +
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 53.9 bits (130), Expect = 1e-07
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 31/151 (20%)
Query: 26 LSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG---NVFLHSSSRLGYLEQ------- 75
L++ + VG NGSGKS L + AG SG + F +RL EQ
Sbjct: 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQF-SHITRLS-FEQLQKLVSD 81
Query: 76 -----NPDLSHFSTISQYIDDT-------IKDTIEAPYSPYSLLKKFNLRE--QDRIENL 121
N D+ +S DDT I+D ++ P L ++F + R + L
Sbjct: 82 EWQRNNTDM-----LSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYL 136
Query: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLD 152
S G+TR L + L+S PD+LILDEP + LD
Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLD 167
Score = 49.6 bits (119), Expect = 2e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 293 QYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
Y+DR ++ + S +++ GE IVGPNGAGK+TLL L+TG
Sbjct: 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
Score = 38.1 bits (89), Expect = 0.007
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLD--FRTI--HWMEQELLKINSALIFVSH 175
LS GQ R +++ L+ P +LILDEP LD R + +++ + + + L+FVSH
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
Score = 37.3 bits (87), Expect = 0.011
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 46/179 (25%)
Query: 304 SLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP-----DCGFITLGTNL------KIATI 352
SL ++ G+ VG NG+GK+ L + L G++ F + T L K+ +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI-TRLSFEQLQKLVSD 81
Query: 353 DQKREDIDPDKSLASYLTGSSGDSLMVRGES---RHVAGYIKDFLFHPDQAHSL------ 403
+ +R + D ++ GE R A I+D + P + L
Sbjct: 82 EWQRNNTD----------------MLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGI 125
Query: 404 -------MKHLSGGEKMRAIVARVL-AQPFNFLIMDEPTNDLDFETLDFLERTITQLQG 454
K+LS GE + ++ + L ++P + LI+DEP + LD + L + L
Sbjct: 126 TALLDRRFKYLSTGETRKTLLCQALMSEP-DLLILDEPFDGLDVASRQQLAELLASLHQ 183
Score = 31.5 bits (72), Expect = 0.60
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 28 IKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
+ P E +VG NG+GKSTLL + G PQ
Sbjct: 283 VNPGEHWQIVGPNGAGKSTLLSLITG-DHPQG 313
Score = 30.4 bits (69), Expect = 1.6
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLD------FLERTITQLQGTILIVS 460
LS G++ A++ R L + LI+DEP LD L+ F++ I++ + +L VS
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLD--PLNRQLVRRFVDVLISEGETQLLFVS 459
Query: 461 H 461
H
Sbjct: 460 H 460
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 53.8 bits (130), Expect = 1e-07
Identities = 51/241 (21%), Positives = 93/241 (38%), Gaps = 65/241 (26%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAG-----IT----- 55
L++ + ++ ++L+ V L++K E ++G NGSGKSTL K AG +T
Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL 60
Query: 56 ---------EPQ--------------------SGNVFLHSS--SRLGYLEQNP-DLSHFS 83
EP S FL S+ +R + P DL F
Sbjct: 61 FKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL 120
Query: 84 TISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILI 143
+ + + ++ + S+ + F+ E+ R E +++M + P + I
Sbjct: 121 KLLKAKLALLG--MDEEFLNRSVNEGFSGGEKKRNE-----------ILQMALLEPKLAI 167
Query: 144 LDEPTNHLD---FRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQ 200
LDE + LD + + L + + + + ++H +R L + V H L
Sbjct: 168 LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYV-------HVLLD 220
Query: 201 G 201
G
Sbjct: 221 G 221
Score = 53.4 bits (129), Expect = 1e-07
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 45/208 (21%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC----GFITL-GTNLKI 349
+D+ ++K +L + GE I+GPNG+GK+TL K + G P G I G +L
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLE 68
Query: 350 ATID-----------QKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPD 398
D Q E+I P S +L + RGE + F
Sbjct: 69 LEPDERARAGLFLAFQYPEEI-PGVSNLEFLRSALNARRSARGEEP-----LDLLDFL-K 121
Query: 399 QAHSLMKHL---------------SGGEKMR-AIVARVLAQPFNFLIMDEPTNDLDFETL 442
+ + L SGGEK R I+ L +P I+DE + LD + L
Sbjct: 122 LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP-KLAILDEIDSGLDIDAL 180
Query: 443 DFLERTITQLQG---TILIVSHDRDFLD 467
+ I +L+ + LI++H + L+
Sbjct: 181 KIVAEGINRLREPDRSFLIITHYQRLLN 208
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 53.6 bits (129), Expect = 1e-07
Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 5 ILRLDHIS-ATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGI--------T 55
++ ++I T G L++ + + + + G NG GKS+L +I + T
Sbjct: 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT 510
Query: 56 EPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYI-DDTIKDTIEAPYSPYSLLKKFNL-- 112
+P G +F Y+ Q P ++ + Q I D+ +D S L + +
Sbjct: 511 KPAKGKLF--------YVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQ 562
Query: 113 ------RE------QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME 160
RE QD ++ LS G+ + +A+ ++ +P ILDE T+ + +M
Sbjct: 563 LTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY 622
Query: 161 QELLKINSALIFVSH 175
+ + L VSH
Sbjct: 623 RLCREFGITLFSVSH 637
Score = 44.4 bits (105), Expect = 8e-05
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 38/186 (20%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG---------KIKPDCG--------FI 341
+++ S + G + I GPNG GK++L ++L ++
Sbjct: 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYM 526
Query: 342 TLGTNLKIATI------DQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF 395
TLGT L+ I D KR + DK L L ++ R ++D+
Sbjct: 527 TLGT-LRDQIIYPDSSEDMKRRGLS-DKDLEQILDNVQLTHILEREGGWSA---VQDW-- 579
Query: 396 HPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGT 455
M LSGGEK R +AR+ F I+DE T+ + + ++ R + T
Sbjct: 580 --------MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGIT 631
Query: 456 ILIVSH 461
+ VSH
Sbjct: 632 LFSVSH 637
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 53.4 bits (128), Expect = 2e-07
Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 39/210 (18%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT------------ 331
+LE ++ Y ++ V D S+ I ++GP+G GK+T L+ +
Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 332 GKIKPDCGFITLGTNLKIATIDQKREDI-----DPD---KSLASYLTGSSGDSLMVRGES 383
G+I + G L +N+ + + R +I P+ KS+ + +T +L GE
Sbjct: 81 GEILYE-GLNILDSNINVVNL---RREIGMVFQKPNPFPKSIYNNIT----HALKYAGER 132
Query: 384 RHVA-------GYIKDFLFH--PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPT 434
R K L+ D+ HS LSGG++ R +AR LA L++DEP
Sbjct: 133 RKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192
Query: 435 NDLDFETLDFLERTITQLQG--TILIVSHD 462
+ LD + +E IT+L+ +I+IV+H+
Sbjct: 193 SALDPISNAKIEELITELKEEYSIIIVTHN 222
Score = 39.9 bits (93), Expect = 0.002
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 30/236 (12%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLK--------IAAGITE 56
IL + +S G + D+ + I+ L+G +G GKST L+ I + +E
Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 57 PQ---------SGNVFLHSSSR-LGYLEQNPD---LSHFSTISQYID-------DTIKDT 96
+ N+ + + R +G + Q P+ S ++ I+ + + +
Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI 140
Query: 97 IEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTI 156
+E + +L + R +LS GQ + + + + L +P +L+LDEP + LD +
Sbjct: 141 VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 157 HWMEQEL--LKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKK 210
+E+ + LK ++I V+H+ + +S T + G L DQ F S K+
Sbjct: 201 AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQ 256
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 53.2 bits (127), Expect = 2e-07
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDP 361
D L + G ++G G+GK+TLL+ L G ++P G +T+G + +T QK +I P
Sbjct: 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK--EIKP 81
Query: 362 DKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKH--------------- 406
+ + L + VA ++F ++A +
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS 141
Query: 407 ---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIV 459
LSGG+ R +A +LA L++DEPT LD E + E +I Q T+++V
Sbjct: 142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE-SIHQSGQTVVLV 200
Query: 460 SHDRD 464
+H D
Sbjct: 201 THLMD 205
Score = 46.7 bits (110), Expect = 2e-05
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 53/189 (28%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEP-----QSGNVFLHSSSR------ 69
L D+ L +K L+G GSGKSTLL+ G+ +P G++ + S+S+
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 70 ----LGYLEQNPDLSHFSTISQYIDDTI-KDTIEAPYS-----------------PYSLL 107
+G + Q P+ SQ ++T+ KD P + L
Sbjct: 82 VRKKVGVVFQFPE-------SQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA 134
Query: 108 KKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD----------FRTIH 157
+F E+ E LS GQ R VA+ +L P++L+LDEPT LD F +IH
Sbjct: 135 DEF--WEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191
Query: 158 WMEQELLKI 166
Q ++ +
Sbjct: 192 QSGQTVVLV 200
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 52.7 bits (126), Expect = 2e-07
Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 43/230 (18%)
Query: 264 KSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGK 323
+ F T Q S E +K+ Y +K+ ++ +H + ++GP+G GK
Sbjct: 2 QIFKPAGDVS-PTQQKS-----EVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGK 55
Query: 324 TTLLKLLT------------GKI--KPDCGFI------TLGTNLKIATIDQKREDIDPDK 363
+T L+ G+I PD I + ++I+ + QK P
Sbjct: 56 STFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPF-PKS 114
Query: 364 SLASYLTGSSGDSLMVRGESRH--VAGYIKDFLFHP-------DQAHSLMKHLSGGEKMR 414
+ G L +RG R + +++ L + D+ L +LSGG++ R
Sbjct: 115 IFENVAYG-----LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
+AR LA L+ DEPT+ LD +E I+ L+ TILIV+H+
Sbjct: 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN 219
Score = 39.6 bits (92), Expect = 0.002
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 32/210 (15%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITE--PQS---GNVFLHSSS-- 68
GG L+++ + + K+ L+G +G GKST L+ + + P + G + LH +
Sbjct: 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86
Query: 69 -------------RLGYLEQNPD---LSHFSTISQYID-------DTIKDTIEAPYSPYS 105
R+ + Q P+ S F ++ + +++ +E +
Sbjct: 87 ILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA 146
Query: 106 LLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL-- 163
L + R D NLS GQ + + + + L + P+IL+ DEPT+ LD +E+ +
Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206
Query: 164 LKINSALIFVSHDRRFLETLSTTTVWLDRG 193
LK ++ V+H+ + +S T ++ G
Sbjct: 207 LKNKVTILIVTHNMQQAARVSDYTAYMYMG 236
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 52.7 bits (127), Expect = 3e-07
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 23/161 (14%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL------------GTNL 347
V D S + GE +G+ G GAG+T L+K+L G + G++TL G
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 348 KIATI--DQKRE------DIDPDKSLAS--YLTGSSGDSLMVRGESRHVAGYIKDFLFHP 397
I I D+KR+ + + SL + Y + + G SL E + V+ +I+ F
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGG-SLKHADEQQAVSDFIRLFNIKT 386
Query: 398 DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
+ LSGG + + +AR L LI+DEPT +D
Sbjct: 387 PSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
Score = 51.5 bits (124), Expect = 6e-07
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 49/209 (23%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+L+L I G+ L L++ P + LVG NG+GKST++K+ GI +G++
Sbjct: 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL 62
Query: 64 LHSSSRLGYLEQN-----PDLSHFSTIS------QYIDD-TIKDTI---EAPYSPY---- 104
YL + P S + I I TI + I + +
Sbjct: 63 --------YLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRID 114
Query: 105 ---------SLLKKFNLR--EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD- 152
LL + NLR + LS+G+ + V + K+L ++I+DEPT+ L
Sbjct: 115 WKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174
Query: 153 ------FRTIHWMEQELLKINSALIFVSH 175
FR I EL ++++SH
Sbjct: 175 TETESLFRVIR----ELKSQGRGIVYISH 199
Score = 50.4 bits (121), Expect = 1e-06
Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 48/191 (25%)
Query: 304 SLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT-LGTNLK-----------IAT 351
+L ++ G + +VG NGAGK+T++K+LTG D G I LG + I
Sbjct: 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83
Query: 352 IDQKREDIDPDKSLAS--YL----TGSSG-----------DSLMVRGESRHVAGYIKDFL 394
I Q+ I P ++A +L G D L+ R R
Sbjct: 84 IHQELNLI-PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF--------- 133
Query: 395 FHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDL-DFETLDFLERTITQL- 452
+ L+ LS GE+ +A+VL+ +IMDEPT+ L D ET L R I +L
Sbjct: 134 ----SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES-LFRVIRELK 188
Query: 453 -QGT-ILIVSH 461
QG I+ +SH
Sbjct: 189 SQGRGIVYISH 199
Score = 42.7 bits (101), Expect = 3e-04
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 16/78 (20%)
Query: 110 FNL----REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD-------FRTIHW 158
FN+ EQ I LS G + VA+ + L++RP +LILDEPT +D ++ I+
Sbjct: 382 FNIKTPSMEQ-AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
Query: 159 MEQELLKINSALIFVSHD 176
+ E L I I VS +
Sbjct: 441 FKAEGLSI----ILVSSE 454
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 52.5 bits (126), Expect = 3e-07
Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL--------HSSSRLGY 72
L ++ ++ + LVG GSGKSTL++ + +P SG + + + L
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 73 LEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSL--------------LKKFNLREQDRI 118
L + L +Q ++T+ +E + P + LKK L E D I
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVE--FGPKNFGFSEDEAKEKALKWLKKVGLSE-DLI 139
Query: 119 E----NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA---LI 171
LS GQ R VA+ ++ P+IL LDEP LD M Q A +I
Sbjct: 140 SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVI 199
Query: 172 FVSHD 176
V+H+
Sbjct: 200 LVTHN 204
Score = 38.7 bits (90), Expect = 0.005
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 25/185 (13%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKREDID 360
+ S + G + +VG G+GK+TL++ +KP G IT+ G ++ T ++ + +
Sbjct: 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84
Query: 361 PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQA--------------HSLMKH 406
SL + L + V K+F F D+A L+
Sbjct: 85 KKVSLVFQFPEA---QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK 141
Query: 407 ----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG---TILIV 459
LSGG+ R +A V+A L +DEP LD E + + Q T+++V
Sbjct: 142 SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILV 201
Query: 460 SHDRD 464
+H+ D
Sbjct: 202 THNMD 206
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 52.4 bits (125), Expect = 3e-07
Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 47/184 (25%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYL 369
GE I IVGP G+GKTTL + L ++ P G + ID + L L
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY---------------IDGEDILEEVL 46
Query: 370 TGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLI 429
+ + S SG ++R +A + LI
Sbjct: 47 DQLLLIIVGGKKAS-----------------------GSGELRLRLALALARKLKPDVLI 83
Query: 430 MDEPTNDLDFET---------LDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIE 480
+DE T+ LD E L L ++ T+++ ++D L + + I
Sbjct: 84 LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIV 143
Query: 481 DPNG 484
Sbjct: 144 LLLI 147
Score = 51.2 bits (122), Expect = 8e-07
Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 40/160 (25%)
Query: 30 PKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYI 89
P E I +VG GSGK+TL + A P G V
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID----------------------G 38
Query: 90 DDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTN 149
+D +++ ++ KK + + R+ AL +PD+LILDE T+
Sbjct: 39 EDILEEVLDQLLLIIVGGKKASGSGELRLRL---------ALALARKLKPDVLILDEITS 89
Query: 150 HLDFRT---------IHWMEQELLKINSALIFVSHDRRFL 180
LD + + + N +I ++D + L
Sbjct: 90 LLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 52.4 bits (126), Expect = 4e-07
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 41/164 (25%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS------------ 68
L DV L+I+ +G GSGKST++++ G+ P G+V + +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 69 ---RLGYLEQNPDLSHFSTISQYIDDTI-KDTIEAPYSPYSLLKKF-------------- 110
++G + Q P+ SQ ++T+ KD P + + + ++
Sbjct: 83 IRKKVGLVFQFPE-------SQLFEETVLKDVAFGPQN-FGVSQEEAEALAREKLALVGI 134
Query: 111 --NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+L E++ E LS GQ R VA+ +L P IL+LDEPT LD
Sbjct: 135 SESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Score = 42.4 bits (100), Expect = 3e-04
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDP 361
D +L I G +G G+GK+T+++LL G P G + + + T K +DI
Sbjct: 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDD--TLITSTSKNKDIKQ 82
Query: 362 DKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKH--------------- 406
+ + L + VA ++F ++A +L +
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKN 142
Query: 407 ---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD---FETLDFLERTITQLQGTILIVS 460
LSGG+ R +A +LA L++DEPT LD + L L + + Q TI++V+
Sbjct: 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202
Query: 461 HDRD 464
H D
Sbjct: 203 HLMD 206
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 52.3 bits (125), Expect = 4e-07
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 30/193 (15%)
Query: 26 LSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH-----SSSRLGYLEQNPDLS 80
L I + + +VG NG GKSTL K+ G+ PQ G + L + SR Y +
Sbjct: 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL----- 417
Query: 81 HFSTI-SQY--IDDTIK-DTIEAPY--SPYSLLKKFNLREQDRIEN--------LSVGQT 126
FS I + + DD I D E + L++ + ++ +IE+ LS GQ
Sbjct: 418 -FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQ 476
Query: 127 RCVALMKMLISRPDILILDEPTNHLD--FRTIHWME--QELLKINSALIFVSHDRRFLET 182
+ +AL+ + IL+ DE D F+ + E +L + +I +SHD ++ E
Sbjct: 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE- 535
Query: 183 LSTTTVWLDRGCL 195
L+ + L GC+
Sbjct: 536 LADQIIKLAAGCI 548
Score = 47.6 bits (113), Expect = 8e-06
Identities = 54/177 (30%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 305 LRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED------ 358
LRI G+ + IVG NG GK+TL KL G P G I L A R+D
Sbjct: 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGA---AVSADSRDDYRDLFS 419
Query: 359 -IDPDKSLASYLTG-SSGDSLMVRGESRHVAGY-IKDFLFHPDQAHSLMKHLSGGEKMRA 415
I D L L G G+ + +++ I D + D S LS G++ R
Sbjct: 420 AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479
Query: 416 IVARVLAQPFNFLIMDEPTNDLD--FETLDFLERTITQL--QG-TILIVSHDRDFLD 467
+ + L+ DE D D F+ F E + L QG TI+I+SHD + +
Sbjct: 480 ALICAWLEDRPILLFDEWAADQDPAFKRF-FYEELLPDLKRQGKTIIIISHDDQYFE 535
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 52.3 bits (126), Expect = 4e-07
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 28/215 (13%)
Query: 274 LQTTQSSGKLVLEADK-------ITKQYD--DRLVVKDFSLRIHYGECIGIVGPNGAGKT 324
L+ + GK V+E K +T Y + +++ + +I G+ + +VG +G+GK+
Sbjct: 324 LEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKS 383
Query: 325 TLLKLLTGKIKPDCGFITL-GTNLKIATIDQKREDIDP--------DKSLASYLTGSSGD 375
T+ LLT D G I L G +L+ T+ R + + ++A+ + + +
Sbjct: 384 TIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE 443
Query: 376 SLMVRGESRHVA--GYIKDFLFHPDQAHSLM-----KHLSGGEKMRAIVARVLAQPFNFL 428
R + A Y DF+ D + LSGG++ R +AR L + L
Sbjct: 444 QY-SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPIL 502
Query: 429 IMDEPTNDLDFETLDFLERTITQLQG--TILIVSH 461
I+DE T+ LD E+ ++ + +LQ T L+++H
Sbjct: 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Score = 45.0 bits (107), Expect = 6e-05
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 41/184 (22%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGIT---EPQSGNVFLHSSS----RLGYL 73
L+++ I + + LVG +GSGKST IA +T + G + L L L
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKST---IANLLTRFYDIDEGEILLDGHDLRDYTLASL 415
Query: 74 EQNPDLSHFSTISQYI---DDTIKDTI----EAPYSPYSLLKK---------FNLREQ-- 115
+ +SQ + +DTI + I YS + + N +
Sbjct: 416 RN-----QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGL 470
Query: 116 DRI--EN---LSVGQTRCVALMKMLISRPDILILDEPTNHLDF---RTIHWMEQELLKIN 167
D + EN LS GQ + +A+ + L+ ILILDE T+ LD R I EL K
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 168 SALI 171
++L+
Sbjct: 531 TSLV 534
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 52.0 bits (124), Expect = 4e-07
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 48/194 (24%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS--------- 68
++ L V SI E + ++G NGSGKST ++ G+ E G V +
Sbjct: 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNL 79
Query: 69 --RLGYLEQNPDLSHFSTISQYIDDTIKDTI----EAPYSPYSLLKK------------- 109
++G + QNPD +Q++ T++D + E P + K
Sbjct: 80 RRKIGMVFQNPD-------NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD 132
Query: 110 FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD-------FRTIHWMEQE 162
F RE R LS GQ + VA+ ++ RP+I+ILDE T+ LD R IH +++
Sbjct: 133 FKTREPAR---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE- 188
Query: 163 LLKINSALIFVSHD 176
K ++ ++HD
Sbjct: 189 --KYQLTVLSITHD 200
Score = 45.9 bits (108), Expect = 3e-05
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 30/205 (14%)
Query: 284 VLEADKITKQYDDRLVVKDF---SLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
+LE + + +Y+ V S I GE + I+G NG+GK+T +L+ G + G
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 341 ITL-GTNL----------KIATIDQKRED------IDPDKSLASYLTGSSGDSLMVRGES 383
+ + G L KI + Q ++ ++ D + G + ++ R +
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123
Query: 384 RHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLD 443
+A + DF LSGG+K R VA ++A +I+DE T+ LD
Sbjct: 124 ALLAVNMLDFKTREP------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 444 FLERTITQLQG----TILIVSHDRD 464
+ R I +++ T+L ++HD D
Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLD 202
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 52.1 bits (125), Expect = 4e-07
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 35/216 (16%)
Query: 275 QTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT--G 332
+ S +++ +T Y VK+ I G+ ++GP+G GK+T+L+ L
Sbjct: 4 TNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN 63
Query: 333 KIKPDC---GFITL-GTNLKIATID--QKREDI-----DPD---KSL------ASYLTGS 372
+ C G + GT+L +D + R I P+ KS+ + + G
Sbjct: 64 DLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY 123
Query: 373 SGD-SLMVRGESRHVAGY--IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLI 429
+GD +V R A + KD L + +SL SGG++ R +AR +A ++
Sbjct: 124 TGDMDELVERSLRKAAVWDECKDKL--NESGYSL----SGGQQQRLCIARTIAIEPEVIL 177
Query: 430 MDEPTNDLD-FETLDFLERTITQLQG--TILIVSHD 462
MDEP + LD TL +E T+ +L+ TI+IV+H+
Sbjct: 178 MDEPCSALDPISTLK-IEETMHELKKNFTIVIVTHN 212
Score = 29.8 bits (67), Expect = 2.1
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSALIFVSHD 176
LS GQ + + + + + P+++++DEP + LD + +E+ + LK N ++ V+H+
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
Score = 27.5 bits (61), Expect = 9.5
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLK 49
I+ L +++ + G + +++V I + L+G +G GKST+L+
Sbjct: 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLR 57
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 52.0 bits (124), Expect = 5e-07
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 20/199 (10%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L ++I ++ L VKD SL I GE I+G +G+GK+T+++LL I+P G + +
Sbjct: 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI- 87
Query: 345 TNLKIATI-DQKREDIDPDK--------SLASYLTGSSGDSL------MVRGESRHVAGY 389
+ IA I D + ++ K +L ++T + + E R A
Sbjct: 88 DGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALD 147
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFL 445
+ + AHS LSGG + R +AR LA + L+MDE + LD E D L
Sbjct: 148 ALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL 207
Query: 446 ERTITQLQGTILIVSHDRD 464
+ + Q TI+ +SHD D
Sbjct: 208 VKLQAKHQRTIVFISHDLD 226
Score = 47.7 bits (113), Expect = 8e-06
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 25/181 (13%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH-------SSSRLGYL 73
++D L+I+ E ++G +GSGKST++++ + EP G V + S + L +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 74 EQNPDLSHFSTISQYIDDTIKDT------IEAPYSPYSLLKKFNLREQDRIEN------- 120
+ F + + T+ D + + K + Q +EN
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163
Query: 121 -LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS----ALIFVSH 175
LS G + V L + L PDIL++DE + LD M+ EL+K+ + ++F+SH
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 176 D 176
D
Sbjct: 224 D 224
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 51.3 bits (123), Expect = 6e-07
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 37/208 (17%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKL------LTGKIKPD 337
VL + + Y L VK+ L I + +GP+G GK+T+L+ L + +
Sbjct: 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVE 69
Query: 338 CGFITLGTNLKIATID------------QK----REDIDPDKSLASYLTGSSGD-SLMVR 380
G NL +D QK + I + + + + G GD +V
Sbjct: 70 GKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVE 129
Query: 381 GESRHVAGY--IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLA-QPFNFLIMDEPTNDL 437
R A + +KD L + LSGG++ R +AR +A QP ++MDEP + L
Sbjct: 130 RSLRQAALWDEVKDKLKQSGLS------LSGGQQQRLCIARAIAVQP-EVILMDEPCSAL 182
Query: 438 D-FETLDFLERTITQL--QGTILIVSHD 462
D TL +E + +L Q TI+IV+H+
Sbjct: 183 DPISTLR-IEELMHELKEQYTIIIVTHN 209
Score = 32.4 bits (74), Expect = 0.36
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 60/216 (27%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERI-CLVGCNGSGKSTLLK--------IAAGIT 55
+LR ++++ G +++V L I PK +I +G +G GKST+L+ I
Sbjct: 10 VLRTENLNVYYGSFLAVKNVWLDI-PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 56 EPQSGNVFLHSSS-------------RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYS 102
E G V H + R+G + Q P+ F +I D I Y
Sbjct: 69 E---GKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN--PFPK-------SIYDNI--AYG 114
Query: 103 PYSLLKKFNLRE---------------QDRIE----NLSVGQTRCVALMKMLISRPDILI 143
K ++ E +D+++ +LS GQ + + + + + +P++++
Sbjct: 115 ARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVIL 174
Query: 144 LDEPTNHLD---FRTIHWMEQELLKINSALIFVSHD 176
+DEP + LD I + E LK +I V+H+
Sbjct: 175 MDEPCSALDPISTLRIEELMHE-LKEQYTIIIVTHN 209
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 51.1 bits (122), Expect = 8e-07
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL------TGKIKPDCGFITLGTNL 347
Y +K+ +L I E I+GP+G GK+T +K L +K G+N+
Sbjct: 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81
Query: 348 KIATID--QKREDID---------PDKSLASYLTG------SSGDSLMVRGESRHVAGYI 390
+D + R++I P + G + L E +
Sbjct: 82 LKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVAL 141
Query: 391 KDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTIT 450
D + D+ H+ LSGG++ R +AR LA + L+MDEPT+ LD + +E I
Sbjct: 142 WDEV--KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 451 QLQG--TILIVSHD 462
+L+ TI+IV+H+
Sbjct: 200 KLKEKYTIVIVTHN 213
Score = 36.8 bits (85), Expect = 0.018
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS--ALIFVSHDRR 178
LS GQ + + + + L + PD+L++DEPT+ LD + +E+ +LK+ ++ V+H+ +
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ 215
Query: 179 FLETLSTTTVWLDRGCL 195
+S T + G L
Sbjct: 216 QAARVSDQTAFFYMGEL 232
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.9 bits (122), Expect = 9e-07
Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 34/207 (16%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKI---------- 50
M+ PIL++ +S L V L P E L+G +GSGKSTLL+
Sbjct: 1 MTEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
Query: 51 ----------AAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYI---------DD 91
I P++ V L +G + Q P+ S + D
Sbjct: 61 VTITGSIVYNGHNIYSPRTDTVDLR--KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDK 118
Query: 92 TIKD-TIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNH 150
+ D +E S+ + R D LS GQ + V + ++L + P I++LDEPT+
Sbjct: 119 QVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178
Query: 151 LDFRTIHWMEQEL--LKINSALIFVSH 175
LD + +E+ L LK + ++ V+
Sbjct: 179 LDPISAGKIEETLLGLKDDYTMLLVTR 205
Score = 48.6 bits (116), Expect = 5e-06
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 49/214 (22%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT--GKIKPDC--- 338
+L+ ++ Y+ + + SL + E ++GP+G+GK+TLL+ + + P+
Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 339 GFITL-GTNLKIATID--QKREDI-------DP-------------------DKSLASYL 369
G I G N+ D R++I +P DK +
Sbjct: 65 GSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA 124
Query: 370 TGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLI 429
S ++G S + +KD L H LSGG++ R +ARVLA ++
Sbjct: 125 VEKS-----LKGAS--IWDEVKDRL------HDSALGLSGGQQQRVCIARVLATSPKIIL 171
Query: 430 MDEPTNDLDFETLDFLERTITQL--QGTILIVSH 461
+DEPT+ LD + +E T+ L T+L+V+
Sbjct: 172 LDEPTSALDPISAGKIEETLLGLKDDYTMLLVTR 205
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 50.9 bits (122), Expect = 9e-07
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 40/197 (20%)
Query: 11 ISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL------ 64
IS + G+ L +V L ++P L+G NG+GKSTLLK GI + SG++
Sbjct: 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63
Query: 65 -HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSP-----------YSLLKK--- 109
SS LE + H ++ + ++ D + P Y K
Sbjct: 64 FKSSKEA--LENGISMVH-QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD 120
Query: 110 ---FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPT--------NHLDFRTIHW 158
++ + ++ LSV Q + + + K I+I+DEPT NHL F I
Sbjct: 121 ELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL-FTII-- 177
Query: 159 MEQELLKINSALIFVSH 175
++L + ++++SH
Sbjct: 178 --RKLKERGCGIVYISH 192
Score = 35.5 bits (82), Expect = 0.044
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT---IHWMEQELLKINSALI 171
+ +I +LS G + V + + L+++P+IL+LDEPT +D I+ + EL K + +I
Sbjct: 386 RTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
Query: 172 FVS 174
+S
Sbjct: 446 IIS 448
Score = 32.8 bits (75), Expect = 0.30
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFI 341
++G NGAGK+TLLK L G + D G I
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSI 55
Score = 30.9 bits (70), Expect = 1.1
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 401 HSLMKHLSGGEKMRAIVAR-VLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGT 455
+ + LSGG + + I+ R +L QP L++DEPT +D FE + + +G
Sbjct: 386 RTQIGSLSGGNQQKVIIGRWLLTQP-EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGI 444
Query: 456 ILIVS 460
I+I S
Sbjct: 445 IIISS 449
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 50.8 bits (121), Expect = 1e-06
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 31/228 (13%)
Query: 5 ILRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
ILRL+ ++ G + +C+ ++P E L+G NG+GK+T K+ G T SG+
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 63 FLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLS 122
+ S L + + IDD + T Y+ L+ E +++ N S
Sbjct: 1997 TVAGKSILTNISDVHQNMGYCPQFDAIDDLL--TGREHLYLYARLRGVPAEEIEKVANWS 2054
Query: 123 V------------------GQTRCVALMKMLISRPDILILDEPTNHLD--FRTIHW-MEQ 161
+ G R ++ LI P +++LDEPT +D R + W
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114
Query: 162 ELLKINSALIFVSHDRRFLETLSTTTVWLDRG---CL---HHLDQGFA 203
+++ A++ SH E L T + +G CL HL F
Sbjct: 2115 SIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162
Score = 50.0 bits (119), Expect = 2e-06
Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 24/197 (12%)
Query: 284 VLEADKITKQYD-------DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
+L +++TK Y DRL V + GEC G++G NGAGKTT K+LTG
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVG-----VRPGECFGLLGVNGAGKTTTFKMLTGDTTV 1991
Query: 337 DCGFITLGTNLKIATIDQKREDID--PD-KSLASYLTGSSGDSLMVR------GESRHVA 387
G T+ + I +++ P ++ LTG L R E VA
Sbjct: 1992 TSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVA 2051
Query: 388 GYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
+ L A L SGG K + A L +++DEPT +D + L
Sbjct: 2052 NWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWN 2111
Query: 448 TITQL---QGTILIVSH 461
TI + +++ SH
Sbjct: 2112 TIVSIIREGRAVVLTSH 2128
Score = 43.1 bits (101), Expect = 2e-04
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 26/162 (16%)
Query: 36 LVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS----------SRLGYLEQNPDLSHFSTI 85
+G NG+GK+T L I G+ P SG V + LG Q+ L H T+
Sbjct: 961 FLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020
Query: 86 SQYI----------DDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKML 135
+++I + + +EA L K N QD LS G R +++
Sbjct: 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQD----LSGGMQRKLSVAIAF 1076
Query: 136 ISRPDILILDEPTNHLDFRTIHWMEQELLKINSA--LIFVSH 175
+ +++LDEPT+ +D + + LLK S +I +H
Sbjct: 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
Score = 40.0 bits (93), Expect = 0.002
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 31/192 (16%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR 356
R V ++ + + +G NGAGKTT L +LTG + P G + +G +D R
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
Query: 357 EDID--PDKSLA-------------SYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAH 401
+ + P ++ + L G S + + E+ ++D H + +
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEA-----MLEDTGLH-HKRN 1056
Query: 402 SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL------QGT 455
+ LSGG + + VA +++DEPT+ +D + R+I L T
Sbjct: 1057 EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD----PYSRRSIWDLLLKYRSGRT 1112
Query: 456 ILIVSHDRDFLD 467
I++ +H D D
Sbjct: 1113 IIMSTHHMDEAD 1124
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 50.0 bits (119), Expect = 2e-06
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 23/207 (11%)
Query: 279 SSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT------G 332
+ ++E + + Y D + + +++I ++GP+G GK+T L+ L
Sbjct: 2 PKNEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVE 61
Query: 333 KIKPDCGFITLGTNLKIATID--QKREDI-----DPDKSLAS-YLTGSSGDSLMVRGESR 384
IK + I G N+ D + R I P+ L S Y S G + + +
Sbjct: 62 GIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKK 121
Query: 385 HV-----AGYIKDFLFH--PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDL 437
+ K L++ D+ ++ LSGG++ R +AR LA N ++MDEPT+ L
Sbjct: 122 KLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSAL 181
Query: 438 DFETLDFLERTITQLQG--TILIVSHD 462
D + +E I L+ TI+IV+H+
Sbjct: 182 DPISTGKIEELIINLKESYTIIIVTHN 208
Score = 36.9 bits (85), Expect = 0.015
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 30/210 (14%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITE-----PQSGNVFLHSSS------- 68
L ++ + I L+G +G GKST L+ + + GNV +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 69 ------RLGYLEQNPD---LSHFSTIS-----QYIDDTIK--DTIEAPYSPYSLLKKFNL 112
++G + Q P+ +S + IS D K + +E +L +
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 113 REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSAL 170
+ +LS GQ + + + + L P+++++DEPT+ LD + +E+ + LK + +
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202
Query: 171 IFVSHDRRFLETLSTTTVWLDRGCLHHLDQ 200
I V+H+ + +S T + GC+
Sbjct: 203 IIVTHNMQQAGRISDRTAFFLNGCIEEESS 232
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.0 bits (119), Expect = 2e-06
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 288 DKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL------------TGKIK 335
+++ + VKD S+ I+GP+G GK+T+L+ + TGKI
Sbjct: 8 EQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL 67
Query: 336 PDCGFI------TLGTNLKIATIDQKREDIDP----DKSLASY-LTG----SSGDSLMVR 380
D I + ++ + QK D +A Y L G S D + V
Sbjct: 68 LDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI-VE 126
Query: 381 GESRHVAGY--IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
+ VA + +KD L +++++ LSGG++ R +AR +A ++MDEP + LD
Sbjct: 127 SSLKRVALWDEVKDRL----KSNAME--LSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
Query: 439 FETLDFLERTITQLQG--TILIVSHD 462
+ +E I +L+ TI+IV+H+
Sbjct: 181 PISTLKIEELIEELKEKYTIIIVTHN 206
Score = 37.7 bits (87), Expect = 0.010
Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 45/228 (19%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKI---------AAGITE 56
++L+ ++ G ++DV + ++G +G GKST+L+ +A +T
Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVT- 63
Query: 57 PQSGNVFLHSSS-------------RLGYLEQNPDLSHFSTISQYIDDTIK--------D 95
G + L + R+G + Q P+ F +S Y D+ I +
Sbjct: 64 ---GKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN--PFPAMSIY-DNVIAGYKLNGRVN 117
Query: 96 TIEAPYSPYSLLKKFNLREQ--DRIEN----LSVGQTRCVALMKMLISRPDILILDEPTN 149
EA S LK+ L ++ DR+++ LS GQ + + + + + +P+++++DEP +
Sbjct: 118 RSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS 177
Query: 150 HLDFRTIHWMEQ--ELLKINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
LD + +E+ E LK +I V+H+ + +S T + G L
Sbjct: 178 ALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDL 225
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 49.7 bits (119), Expect = 2e-06
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEP---QSGNVFLHS--------SS 68
LL++V KP E + ++G +G+GK+TL+ A + SG+V L+ +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 69 RLGYLEQNPDL--------------SHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLRE 114
Y++Q+ DL +H + ++ ++ L K N R
Sbjct: 100 ISAYVQQD-DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRI 158
Query: 115 QD--RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
R++ LS G+ + +A L++ P +L DEPT+ LD
Sbjct: 159 GVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
Score = 43.9 bits (104), Expect = 1e-04
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 39/158 (24%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIA---TIDQKREDIDPDKSLA 366
GE + ++G +GAGKTTL+ L + +K + ++ D ++++
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSP---------KGVKGSGSVLLNGMPIDAKEMRAIS 101
Query: 367 SYL--------TGSSGDSLMVRGESRHVAGYIKDFLFH-----------PDQAHSL---- 403
+Y+ T + + LM + R K A++
Sbjct: 102 AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP 161
Query: 404 --MKHLSGGEKMR-AIVARVLAQPFNFLIMDEPTNDLD 438
+K LSGGE+ R A + +L P L DEPT+ LD
Sbjct: 162 GRVKGLSGGERKRLAFASELLTDP-PLLFCDEPTSGLD 198
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 49.6 bits (119), Expect = 2e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 298 LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
L V + +L + E + ++GPNGAGKTT+ LTG KP G I L
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64
Score = 48.1 bits (115), Expect = 6e-06
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 33/180 (18%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
MS P+L + + GG+ + +V L ++ +E + L+G NG+GK+T+ G +P G
Sbjct: 1 MSQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60
Query: 61 NVFL----------HSSSRLGYLE--QNPDL-------------SHFSTISQYIDDTIKD 95
+ L H +R+G + Q+ L H + +K
Sbjct: 61 TILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKT 120
Query: 96 TI------EAPYSPYSLLKKFNLREQDRIE--NLSVGQTRCVALMKMLISRPDILILDEP 147
EA + L++ L E + NL+ GQ R + + + ++++P+IL+LDEP
Sbjct: 121 PAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 49.2 bits (118), Expect = 3e-06
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 20/202 (9%)
Query: 290 ITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT------- 342
I Y + D +L GE + ++GP+GAGK++LL++L P G +
Sbjct: 8 INCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD 67
Query: 343 LGTNLKIATIDQKREDID---------PDKSLASYLTGSSGDSL-MVRGESRHVAGYIKD 392
I + R ++ P ++ L + L + + ++ A + +
Sbjct: 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLE 127
Query: 393 FLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL 452
L A HLSGG++ R +AR L L+ DEPT LD E + I +L
Sbjct: 128 RLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
Query: 453 QGT---ILIVSHDRDFLDRTVT 471
T +IV+H+ + +T +
Sbjct: 188 AETGITQVIVTHEVEVARKTAS 209
Score = 47.7 bits (114), Expect = 9e-06
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
++L+ I+ G L D+ L E + L+G +G+GKS+LL++ + P+SG L+
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT--LN 60
Query: 66 SSSRLGYLEQNPDLS--------------------HFSTISQYIDDTIK----DTIEAPY 101
+ + P H + I+ + +A
Sbjct: 61 IAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA 120
Query: 102 SPYSLLKKFNLRE-QDRIE-NLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
LL++ L+ DR +LS GQ + VA+ + L+ P +L+ DEPT LD
Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 49.4 bits (118), Expect = 3e-06
Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 27/208 (12%)
Query: 280 SGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT--GKIKPD 337
+ +++L + Y ++ + D ++ I ++GP+G GK+TLL+ + P
Sbjct: 2 TMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG 61
Query: 338 C---GFITL-GTNLKIATID--QKREDI-----DPD---KSLASYLTGSSGDSLMVRGES 383
C G I G N+ + D R I P+ KS+ Y + G +
Sbjct: 62 CRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSI--YENVAYGPRIHGEKNK 119
Query: 384 RHVAGYIKDFLFHP-------DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
+ + ++ L D+ H LSGG++ R +AR LA ++MDEP +
Sbjct: 120 KTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA 179
Query: 437 LDFETLDFLERTITQL--QGTILIVSHD 462
LD +E I L + T++IV+H+
Sbjct: 180 LDPIATAKIEDLIEDLKKEYTVIIVTHN 207
Score = 36.0 bits (83), Expect = 0.027
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 30/232 (12%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS----- 59
IL +++ G L D+ +SI L+G +G GKSTLL+ + +
Sbjct: 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT 65
Query: 60 GNVFLHSSS-------------RLGYLEQNP---------DLSHFSTISQYIDDTIKDTI 97
G++ + + ++G + Q P ++++ I + DTI
Sbjct: 66 GDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI 125
Query: 98 -EAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTI 156
E +L + R D +LS GQ + + + + L P+++++DEP + LD
Sbjct: 126 VEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 157 HWMEQ--ELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFE 206
+E E LK +I V+H+ + +S T ++ G L D+ FE
Sbjct: 186 AKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 48.7 bits (116), Expect = 5e-06
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHDRD 464
LSGG++ R VAR LA L++DEPT+ LD + +E I +L+G TI+IV+H+
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
Query: 465 FLDRTVTSTI 474
R T+
Sbjct: 243 QASRVSDYTM 252
Score = 35.3 bits (81), Expect = 0.046
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 116 DRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ--ELLKINSA 169
DR++ LS GQ + + + + L P+IL+LDEPT+ LD + +E + L+ +
Sbjct: 174 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 233
Query: 170 LIFVSHDRRFLETLSTTTVWLDRGCL 195
++ V+H+ + +S T++ G L
Sbjct: 234 IMIVTHNMQQASRVSDYTMFFYEGVL 259
Score = 28.7 bits (64), Expect = 4.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 17/58 (29%)
Query: 286 EADKITKQYDDRLVVKDFSLRIHYGE---------------CIGIVGPNGAGKTTLLK 328
E K++ +V K+FS I+YGE I+GP+G GK+T L+
Sbjct: 28 ERKKVSGGGKPHVVAKNFS--IYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLR 83
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 48.4 bits (116), Expect = 5e-06
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 398 DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--T 455
D+ H LSGG++ R +AR LA L++DEPT+ LD +E I +L+ T
Sbjct: 136 DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYT 195
Query: 456 ILIVSH 461
I+IV+H
Sbjct: 196 IVIVTH 201
Score = 41.1 bits (97), Expect = 8e-04
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 40/226 (17%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLK--------------- 49
+ +++++ G + L+++ L I + L+G +G GKSTLL+
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 50 ---IAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTI---------KDTI 97
+ G + R+G + Q P+ S I D I KD
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMS-----IYDNIAYGPRLHGIKDKK 115
Query: 98 EAPYSPYSLLKKFNLREQ--DRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHL 151
E LKK L ++ DR+ + LS GQ + + + + L P++L+LDEPT+ L
Sbjct: 116 ELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 152 DFRTIHWMEQEL--LKINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
D +E+ + LK ++ V+H+ + +S T + G L
Sbjct: 176 DPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
Score = 38.8 bits (91), Expect = 0.004
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
+E + + Y ++ +K+ +L I + ++GP+G GK+TLL+ L
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL 47
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.5 bits (115), Expect = 5e-06
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 37/208 (17%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKL------------LTG 332
++A + Y D +K S+ I + +GP+G GK+T L+L L G
Sbjct: 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63
Query: 333 KIKPDCGFITLGTNL--KIATIDQKREDID---------PDKSLASYLTGSSGDSLMVRG 381
+I+ D G N+ K +D+ R+++ P + G + +
Sbjct: 64 EIRID------GRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNA 117
Query: 382 ESRH-VAGYIKDFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
R V +K D+ +K LSGG++ R +AR +A + L+MDEP +
Sbjct: 118 FIRQRVEETLKGAALW-DEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176
Query: 437 LDFETLDFLERTITQLQG--TILIVSHD 462
LD + +E I +L+ TI+IV+H+
Sbjct: 177 LDPISTAKVEELIHELKKDYTIVIVTHN 204
Score = 37.7 bits (87), Expect = 0.008
Identities = 46/235 (19%), Positives = 97/235 (41%), Gaps = 30/235 (12%)
Query: 10 HISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLK--------IAAGITEPQ--- 58
++ G L+ + + I+ K + +G +G GKST L+ I A E +
Sbjct: 8 DVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRI 67
Query: 59 -SGNVFLHS------SSRLGYLEQNPD---LSHFSTISQYI-------DDTIKDTIEAPY 101
N++ +G + Q P+ S F ++ + + I+ +E
Sbjct: 68 DGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETL 127
Query: 102 SPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ 161
+L + + ++ LS GQ + + + + + P +L++DEP + LD + +E+
Sbjct: 128 KGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187
Query: 162 EL--LKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQ 214
+ LK + ++ V+H+ + +S T + G + D F + +K Q
Sbjct: 188 LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQ 242
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 48.5 bits (115), Expect = 5e-06
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT------GKIKPDCGFITLGTNL 347
YD + +++ S+ I+ + I+GP+G GK+T LK L +++ + N+
Sbjct: 17 YDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNI 76
Query: 348 --KIATIDQKREDID---PDKSL---ASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPD- 398
+ +++ R + P +L + Y + G ++ + ++ L D
Sbjct: 77 YERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL 136
Query: 399 ------QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL 452
+ H LSGG++ R +AR LA L+MDEP LD +E I L
Sbjct: 137 WDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSL 196
Query: 453 ----QGTILIVSHD 462
+ T++IVSH+
Sbjct: 197 RLRSELTMVIVSHN 210
Score = 36.2 bits (83), Expect = 0.027
Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 32/220 (14%)
Query: 3 LPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS--- 59
+P ++++++S +L+ V + I + ++G +G GKST LK + E +S
Sbjct: 5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 60 --GNVFLHSSS-------------RLGYLEQNPDLSHFST----------ISQYIDDTIK 94
G V + + ++ + P+L S + I
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 95 DTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD-- 152
D +E+ L + + +LS GQ + + + + L +P +L++DEP LD
Sbjct: 125 DIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184
Query: 153 --FRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWL 190
+ ++ L+ ++ VSH+ + LS T +
Sbjct: 185 ASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 48.3 bits (115), Expect = 5e-06
Identities = 58/258 (22%), Positives = 93/258 (36%), Gaps = 71/258 (27%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS-----------SSR 69
L D+ L + I LVG NGSGKSTL I G P G V + S +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99
Query: 70 LGYLEQ------------------NPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN 111
L +E P + FS + ++I Y P
Sbjct: 100 LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQP-------- 140
Query: 112 LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----- 166
++ S G + + PDIL++DE L + ++ L KI
Sbjct: 141 ------VKKYSSGMRAKLGFSINITVNPDILVIDEA---LSVGDQTFAQKCLDKIYEFKE 191
Query: 167 -NSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKK 225
N + FVSH+ + T W++ G L + ++L + + ++ KK
Sbjct: 192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE--------LDDVLPKYEAFLNDFKK 243
Query: 226 KNEAEKEWLRYGVTARRK 243
K++AE++ R + R
Sbjct: 244 KSKAEQKEFRNKLDESRF 261
Score = 40.6 bits (95), Expect = 0.001
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
D SL+ + G+ IG+VG NG+GK+TL ++ G + P G +
Sbjct: 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 48.4 bits (115), Expect = 5e-06
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS--SRLGYLEQNP 77
+L + + P E++ +VG G+GKS++L I E + G + + ++ G +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310
Query: 78 DLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRI------------------- 118
LS T++ I+ P+S ++ + E+ I
Sbjct: 1311 VLSIIPQSPVLFSGTVRFNID-PFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
EN SVGQ + ++L + L+ R IL+LDE T +D RT
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
Score = 39.6 bits (92), Expect = 0.003
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 29/185 (15%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL-------TGKIK-PDCGFITLG-TNLK- 348
V+ S + E +G+VG GAGK+++L L G+I DC G T+L+
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310
Query: 349 -IATIDQK--------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPD- 398
++ I Q R +IDP + + L E H+ I F D
Sbjct: 1311 VLSIIPQSPVLFSGTVRFNIDP-------FSEHNDADLWEALERAHIKDVIDRNPFGLDA 1363
Query: 399 QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ--LQGTI 456
+ ++ S G++ +AR L + L++DE T +D T ++RTI + T+
Sbjct: 1364 EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423
Query: 457 LIVSH 461
L+++H
Sbjct: 1424 LVIAH 1428
Score = 35.0 bits (80), Expect = 0.066
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 31/153 (20%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP--DCGFITLGTNLKIATIDQK---- 355
D +L I G + IVG G GKT+L+ + G++ + G+ +A + Q
Sbjct: 635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGS---VAYVPQVSWIF 691
Query: 356 ----REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMK------ 405
RE+I L GS +S + V D P L +
Sbjct: 692 NATVRENI---------LFGSDFESERY-WRAIDVTALQHDLDLLP--GRDLTEIGERGV 739
Query: 406 HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
++SGG+K R +AR + + I D+P + LD
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
Score = 33.8 bits (77), Expect = 0.14
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 30/156 (19%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAG-ITEPQSGNVFLHSSSRLGYLEQNPDL 79
L D+ L I + +VG G GK++L+ G ++ ++ +V + S + Y+ Q
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGS--VAYVPQ---- 686
Query: 80 SHFSTISQYIDDTIKDTI--EAPYSPYSLLKKFN----------LREQDRIE------NL 121
+S + T+++ I + + + + L +D E N+
Sbjct: 687 -----VSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741
Query: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
S GQ + V++ + + S DI I D+P + LD H
Sbjct: 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAH 777
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 48.1 bits (114), Expect = 6e-06
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----TILIVS 460
K LSGG+K R +AR L + L++DE T+ LD + +E+TI ++ TI+ ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 461 HDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQ 500
H + R + I N D G +++ G + ++L Q
Sbjct: 1417 HRIASIKR--SDKIVVFNNPDRTGSFVQAHGTHEELLSVQ 1454
Score = 41.9 bits (98), Expect = 5e-04
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 390 IKDFLFH-PDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDF 444
I DF+ PD+ +L+ LSGG+K R +AR + + LI+DE T+ LD ++
Sbjct: 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617
Query: 445 LERTITQLQGT----ILIVSH 461
+++TI L+G +I++H
Sbjct: 618 VQKTINNLKGNENRITIIIAH 638
Score = 38.9 bits (90), Expect = 0.004
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 23/101 (22%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS---------- 67
+++ +D+ ++ + VG +G GKST+LK+ + +P G++ ++ S
Sbjct: 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKW 457
Query: 68 --SRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSL 106
S++G + Q+P L FS ++IK+ I+ YS YSL
Sbjct: 458 WRSKIGVVSQDPLL--FS-------NSIKNNIK--YSLYSL 487
Score = 36.2 bits (83), Expect = 0.025
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 56 EPQSGNVFLHSSSRLG----YLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN 111
EP N+ ++ + + G E F+ I ++I+ ++ + + PY
Sbjct: 1304 EPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIE-SLPNKYDTNVGPYG------ 1356
Query: 112 LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----N 167
++LS GQ + +A+ + L+ P IL+LDE T+ LD + +E+ ++ I +
Sbjct: 1357 -------KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD 1409
Query: 168 SALIFVSH 175
+I ++H
Sbjct: 1410 KTIITIAH 1417
Score = 33.1 bits (75), Expect = 0.22
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 91 DTIKDTIEAPYSPYSLLKKFNLREQDRIENL--------SVGQTRCVALMKMLISRPDIL 142
TIKD+ S L+ F D+ E L S GQ + +++ + +I P IL
Sbjct: 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL 601
Query: 143 ILDEPTNHLDFRTIHWMEQELLKI----NSALIFVSH 175
ILDE T+ LD ++ + +++ + + N I ++H
Sbjct: 602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638
Score = 31.2 bits (70), Expect = 0.86
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 293 QYDDRL---VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKI 349
YD R + KD + + G+ VG +G GK+T+LKL+ P G I + + +
Sbjct: 391 HYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNL 450
Query: 350 ATIDQK 355
I+ K
Sbjct: 451 KDINLK 456
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 48.0 bits (114), Expect = 7e-06
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 291 TKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC--GFITLGTNLK 348
T+Q +R ++ + GE + ++GP+G+GK+TLL L G+I+ + G I L N K
Sbjct: 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI-LANNRK 133
Query: 349 IATIDQKRED-IDPDKSLASYLTGSSG----------DSLMVRGESRHVAGYIKDFLFHP 397
KR + D L +LT SL + + I +
Sbjct: 134 PTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193
Query: 398 DQ----AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
+ +S ++ +SGGE+ R +A + + LI+DEPT+ LD
Sbjct: 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
Score = 40.6 bits (95), Expect = 0.001
Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 48/227 (21%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS--GNVFLHSSS-------RL 70
+L V P E + ++G +GSGKSTLL AG + + G + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 71 GYLEQNPDLSHFSTISQYIDDTIKDTI---EAPYSPYSLLKKFNLREQDRI--------- 118
G++ Q+ L Y T+++T+ P SL K+ + + +
Sbjct: 143 GFVTQDDIL--------YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194
Query: 119 ENLSVGQT-----------RCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LK 165
EN +G + R +MLI+ P +LILDEPT+ LD + + L L
Sbjct: 195 ENTIIGNSFIRGISGGERKRVSIAHEMLIN-PSLLILDEPTSGLDATAAYRLVLTLGSLA 253
Query: 166 INSALIFVSHDR---RFLETLSTTTVWLDRGCLH--HLDQGFAYFES 207
I S + R + + V + CL AYFES
Sbjct: 254 QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFES 300
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 47.7 bits (113), Expect = 8e-06
Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 35/246 (14%)
Query: 267 HSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTL 326
+S+ T + V E + + Y L + D L+I + I +GP+G GK+TL
Sbjct: 3 YSSRSQSDSATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTL 62
Query: 327 LK-------LLTGKIKPDCGFITLGTNL---KIATIDQKRE-------------DIDPDK 363
L+ L+ G K + + N+ +I ++ +R+ I +
Sbjct: 63 LRCFNRMNDLIPGA-KVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENI 121
Query: 364 SLASYLTGSSGD-SLMVRGESRHVAGY--IKDFLFHPDQAHSLMKHLSGGEKMRAIVARV 420
+ A G G+ +V R A + +KD L A LSGG++ R +AR
Sbjct: 122 AFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTA------LSGGQQQRLCIARA 175
Query: 421 LAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QGTILIVSHDRDFLDRTVTSTIAAQN 478
+A + L+MDEP + LD + +E +L Q TI++V+H+ R T
Sbjct: 176 IAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNT 235
Query: 479 IEDPNG 484
D G
Sbjct: 236 EIDEYG 241
Score = 41.2 bits (96), Expect = 8e-04
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 34/203 (16%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+ ++ + GG L DV L I K+ I +G +G GKSTLL+ + + G
Sbjct: 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG---A 76
Query: 65 HSSSRLGYLEQNPDLSHFSTIS---------QYIDDTIKDTIE-APYSPYSLLKKFNLRE 114
RL Y ++N S +++ Q + K E ++P + K NL E
Sbjct: 77 KVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDE 136
Query: 115 ---------------QDRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
+D+++ LS GQ + + + + + +PD+L++DEP + LD +
Sbjct: 137 LVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIS 196
Query: 156 IHWMEQELLKINSA--LIFVSHD 176
+E+ L++ +I V+H+
Sbjct: 197 TRQVEELCLELKEQYTIIMVTHN 219
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 47.8 bits (114), Expect = 9e-06
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 55/213 (25%)
Query: 292 KQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKT----TLLKLLTGK--IKPDCGFITLGT 345
+Q R VV D SL+I GE + +VG +G+GK+ ++L+LL + P G
Sbjct: 17 QQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGE 76
Query: 346 NL--------------KIATIDQK-REDIDP----DKSLASYLT---GSSGDSLMVRGES 383
+L KIA I Q+ ++P +K L L+ G ++ RGE
Sbjct: 77 SLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREA--ARGEI 134
Query: 384 ---------RHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVAR-VLAQPFNFLIMDEP 433
R A + D+ P Q LSGGE+ R ++A +L +P LI DEP
Sbjct: 135 LNCLDRVGIRQAAKRLTDY---PHQ-------LSGGERQRVMIAMALLTRP-ELLIADEP 183
Query: 434 TNDLDF----ETLDFLERTITQLQGTILIVSHD 462
T LD + L L +L +L ++H+
Sbjct: 184 TTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Score = 47.8 bits (114), Expect = 9e-06
Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 42/208 (20%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKST----LLKIAAGITEPQSGNVFLHSSSRLGYLE-- 74
++++ +++P E + LVG +GSGKST LL++ E LH+ +R L
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVR 361
Query: 75 -------QNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENL------ 121
Q+P+ S ++ + I++ + S + REQ I +
Sbjct: 362 HRIQVVFQDPNSSLNPRLN--VLQIIEEGLRVHQPTLSAAQ----REQQVIAVMEEVGLD 415
Query: 122 -----------SVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI---- 166
S GQ + +A+ + LI +P ++ILDEPT+ LD +T+ LLK
Sbjct: 416 PETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD-KTVQAQILALLKSLQQK 474
Query: 167 -NSALIFVSHDRRFLETLSTTTVWLDRG 193
A +F+SHD + L + L +G
Sbjct: 475 HQLAYLFISHDLHVVRALCHQVIVLRQG 502
Score = 43.9 bits (104), Expect = 1e-04
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTT----LLKLLT--GKIKPDCGFITLGTNLK 348
D +VVK+ S + GE +G+VG +G+GK+T LL+L+ G+I D G L
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFD------GQPLH 350
Query: 349 IATIDQK---REDI-----DPDKSLASYLTGSS---------GDSLMVRGESRHVAGYIK 391
Q R I DP+ SL L +L + V ++
Sbjct: 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME 410
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLER 447
+ P+ H SGG++ R +AR L + +I+DEPT+ LD + L L+
Sbjct: 411 EVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470
Query: 448 TITQLQGTILIVSHD 462
+ Q L +SHD
Sbjct: 471 LQQKHQLAYLFISHD 485
Score = 40.5 bits (95), Expect = 0.001
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 42/217 (19%)
Query: 1 MSLPILRLDHISATI--GGID--LLQDVCLSIKPKERICLVGCNGSGKS-TLLKIAAGIT 55
M+ P+L ++++S ++ DV L I+ E + LVG +GSGKS T L I +
Sbjct: 1 MTQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP 60
Query: 56 EPQ----SGNVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKD-----TIEAPYSPYSL 106
P SG++ H S L EQ + I+ + + T+E
Sbjct: 61 SPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS 120
Query: 107 LKKFNLREQDRIE----------------------NLSVGQTRCVALMKMLISRPDILIL 144
L + RE R E LS G+ + V + L++RP++LI
Sbjct: 121 LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180
Query: 145 DEPTNHLDFRTIHWMEQELLK-----INSALIFVSHD 176
DEPT LD ++ +LL+ +N L+F++H+
Sbjct: 181 DEPTTALDV-SVQAQILQLLRELQQELNMGLLFITHN 216
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 47.4 bits (112), Expect = 1e-05
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEP-----Q 58
P + +++ G +L V + + L+G GSGK+T L+ + +
Sbjct: 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRY 79
Query: 59 SGNVFLHSSS------------RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSL 106
SG+V L S R+G L Q P+ S + + + P +
Sbjct: 80 SGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKL-VPRKEFRG 138
Query: 107 LKKFNLRE-------QDRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
+ + L E +DR+ + LS GQ + + L + L P++L+LDEPT+ LD T
Sbjct: 139 VAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198
Query: 156 IHWMEQELLKINSAL--IFVSHD 176
+E+ + + L I V+H+
Sbjct: 199 TEKIEEFIRSLADRLTVIIVTHN 221
Score = 45.1 bits (106), Expect = 5e-05
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 36/207 (17%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+ A +T + + V+ S+ ++GP G+GKTT L+ L G+ G
Sbjct: 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81
Query: 345 TNL-----------------KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVA 387
L ++ + Q R + P + + L G L+ R E R VA
Sbjct: 82 DVLLGGRSIFNYRDVLEFRRRVGMLFQ-RPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA 140
Query: 388 ----------GYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDL 437
+KD L + S + LSGG++ +AR LA L++DEPT+ L
Sbjct: 141 QARLTEVGLWDAVKDRL-----SDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194
Query: 438 DFETLDFLERTITQLQG--TILIVSHD 462
D T + +E I L T++IV+H+
Sbjct: 195 DPTTTEKIEEFIRSLADRLTVIIVTHN 221
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 46.8 bits (111), Expect = 2e-05
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 29/184 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLK-------IAAGIT---------EPQSGNVFL 64
L+ + L I ++ L+G +G GKSTLL+ + G+ E GN+ +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 65 -HSSSRLGYLEQNPD---LSHFSTIS-----QYIDD--TIKDTIEAPYSPYSLLKKFNLR 113
++G + Q P+ +S + ++ Q I D + + +E +L + R
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDR 138
Query: 114 EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ--ELLKINSALI 171
+ LS GQ + + + + + PD++++DEPT+ LD H +E+ E LK N ++
Sbjct: 139 LKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIV 198
Query: 172 FVSH 175
V+H
Sbjct: 199 IVTH 202
Score = 42.9 bits (101), Expect = 3e-04
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 398 DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--T 455
D+ S LSGG++ R +AR +A + ++MDEPT+ LD +E + +L+ T
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196
Query: 456 ILIVSHD----RDFLDRT 469
I+IV+H R DRT
Sbjct: 197 IVIVTHSMQQARRISDRT 214
Score = 31.7 bits (72), Expect = 0.59
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
+ + Y + +K +L I + ++GP+G GK+TLL+ L
Sbjct: 4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCL 49
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 46.6 bits (110), Expect = 2e-05
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 27/217 (12%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLL--------KIAA--GITEPQSGNV----FLHS 66
L D+ + I+ + L+G +G GKST L KIA G+ E + +V +
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 67 SSRLGYLEQNPDL---SHFSTIS--QYIDDTIKDTIEAPYSPYSLLKKFNLREQ--DRIE 119
+G + Q P++ S + IS + IK+ E L+K L E+ D+++
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK 137
Query: 120 N----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSALIFV 173
LS GQ + + + + L +P +L+LDEPT+ LD + +E+ L L N ++I V
Sbjct: 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMV 197
Query: 174 SHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKK 210
+H+ + + ++ T + G L + +FE+ K+
Sbjct: 198 THNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQ 234
Score = 38.1 bits (88), Expect = 0.007
Identities = 44/189 (23%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKL---LTGKIKPDCGFITL-GTNLKI 349
Y + + D +++I + ++G +G GK+T L+ + KI G + + G ++K
Sbjct: 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKN 71
Query: 350 ATIDQKREDI-----DPD---KSLASYLTGSSGDSLMVRGESRHVAGYI----KDFLFH- 396
+ R+++ P+ KS+ ++ + M++ + A + K LF
Sbjct: 72 QDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE 131
Query: 397 -PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG- 454
D+ LSGG++ R +AR LA L++DEPT+ LD + +E + +L
Sbjct: 132 VKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 455 -TILIVSHD 462
++++V+H+
Sbjct: 192 LSMIMVTHN 200
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 46.4 bits (110), Expect = 2e-05
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 406 HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSH 461
+LSGG++ R ++AR LA L+MDEPT ++D +E + +L+ TI++V+H
Sbjct: 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
Score = 41.4 bits (97), Expect = 6e-04
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 32/192 (16%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ-----SGNVFLHSSS-- 68
G +++ V L I L+G +G GKSTLL+ + E G V L +
Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74
Query: 69 -----------RLGYLEQNPD-LSHFS-----TISQYIDDTIKDTIEAPYSPYSLLKKFN 111
+G + Q P+ H + I ++ +K E LKK
Sbjct: 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA 134
Query: 112 L------REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL-- 163
L R D NLS GQ + + + + L +P IL++DEPT ++D +E+ L
Sbjct: 135 LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
Query: 164 LKINSALIFVSH 175
LK ++ V+H
Sbjct: 195 LKKEYTIVLVTH 206
Score = 34.8 bits (80), Expect = 0.063
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLK 328
K +E + Y V+K L+I ++GP+G GK+TLL+
Sbjct: 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLR 48
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 46.2 bits (110), Expect = 2e-05
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 37/164 (22%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS------------- 67
L DV +SI + ++G GSGKSTLL+ G+ +P SG V +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 68 --SRLGYLEQNPDLSHFSTISQYIDDTIKDTI------------EAPYSPYSLLKKFNLR 113
++G + Q P+ Q ++T++ I +A +++ L
Sbjct: 83 LRKKVGIVFQFPE-------HQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLP 135
Query: 114 EQ--DRIE-NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR 154
E+ R LS GQ R VA+ +L P++L+LDEPT LD +
Sbjct: 136 EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
Score = 40.0 bits (94), Expect = 0.002
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQK 355
R + D ++ I G + I+G G+GK+TLL+ L G ++P G +T+G + A K
Sbjct: 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Score = 37.3 bits (87), Expect = 0.012
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVSHD 462
LSGG+ R +A VLA L++DEPT LD E ++ + + T ++V+H
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
Query: 463 RD 464
+
Sbjct: 206 ME 207
>gnl|CDD|183622 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 46.2 bits (110), Expect = 2e-05
Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 38/209 (18%)
Query: 192 RGCLHHLDQGFAYFESWKKNILQQE--------QIRYHNLKKKNEAEKEWLRYGVTAR-R 242
G L L GF + S ++N L IR NL+ + E R R
Sbjct: 20 LGVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGV-----ARPRER 74
Query: 243 KRNVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKD 302
R + RV ++ + ++ F H + +L LE + R+V D
Sbjct: 75 YRVLVRVDSVNGTDPEKLARRPHFDDLTPLHPRE-----RLRLETG--SDDLSMRVV--D 125
Query: 303 FSLRIHYGECIGIVGPNGAGKTTLLKLLTGKI---KPDCGFITLGTNLKIATIDQKREDI 359
I G+ IV P AGKT LL+ + + P+ + L ID++ E++
Sbjct: 126 LVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVL-------LIDERPEEV 178
Query: 360 -DPDKSLASYLTGSSGDSLMVRGESRHVA 387
D +S+ + S+ D R H+
Sbjct: 179 TDMRRSVKGEVYASTFD----RPPDEHIR 203
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.1 bits (109), Expect = 2e-05
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 30/190 (15%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITE--PQ---SGNVFLHSSS-- 68
G +++L V L I L+G +GSGKSTLL++ + E P+ SG V+L
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73
Query: 69 ---------RLGYLEQNPD----LSHFSTIS--QYIDDTIKDTIEAPYSPYSLLKKFNLR 113
R+ + Q P+ LS F ++ ++ +K E L+K L
Sbjct: 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLW 133
Query: 114 EQ--DRIE----NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKIN 167
++ DR++ LS GQ + + + + L +P++L+ DEPT +LD +E L++
Sbjct: 134 DEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK 193
Query: 168 S--ALIFVSH 175
++ V+H
Sbjct: 194 KDMTIVLVTH 203
Score = 42.6 bits (100), Expect = 3e-04
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSH 461
LSGG++ R +AR LA L+ DEPT +LD E +E +L+ TI++V+H
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
Score = 29.5 bits (66), Expect = 2.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
+E + + V+ +L I ++GP+G+GK+TLL++
Sbjct: 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF 49
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se.
Length = 1490
Score = 46.1 bits (109), Expect = 3e-05
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 14 TIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTL----LKIAAGITEPQSGNVFLHSSSR 69
T G +LQD+ S++ +R+ L+G GSGKSTL L++ + E Q V +S +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTL 1287
Query: 70 LGYLEQNPDLSHFSTISQYI---DDTIKDTIEAPYSPYS-------------------LL 107
+ + F I Q + T + ++ PY +S
Sbjct: 1288 QTWRKA------FGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGLKSVIEQFP 1340
Query: 108 KKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
K + D LS G + + L + ++S+ IL+LDEP+ HLD T+ + + L
Sbjct: 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396
Score = 46.1 bits (109), Expect = 3e-05
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL 79
+L+++ ++ + + + G GSGKS+LL + G EP G + S R+ + Q
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI--KHSGRISFSPQ---- 494
Query: 80 SHFSTISQYIDDTIKDTI--EAPYSPY---SLLKKFNLRE-------QDRIE------NL 121
S + TIKD I Y Y S++K L E +D+ L
Sbjct: 495 -----TSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITL 549
Query: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
S GQ ++L + + D+ +LD P HLD T
Sbjct: 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
Score = 44.5 bits (105), Expect = 8e-05
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 35/203 (17%)
Query: 273 HLQTTQSSGKLVLEADKITKQY--DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
H Q SG ++ +T +Y R V++D S + G+ +G++G G+GK+TLL L
Sbjct: 1207 HAQKCWPSGGQ-MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
Query: 331 ------TGKIKPD---CGFITLGTNLK-IATIDQK--------REDIDPDKSLASYLTGS 372
G+I+ D +TL T K I QK R+++DP +
Sbjct: 1266 LRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW------- 1318
Query: 373 SGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFL 428
S + + E + I+ F PD+ ++ LS G K +AR + L
Sbjct: 1319 SDEEIWKVAEEVGLKSVIEQF---PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375
Query: 429 IMDEPTNDLDFETLDFLERTITQ 451
++DEP+ LD TL + +T+ Q
Sbjct: 1376 LLDEPSAHLDPVTLQIIRKTLKQ 1398
Score = 41.4 bits (97), Expect = 8e-04
Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED 358
V+K+ S ++ G+ + + G G+GK++LL ++ G+++P G I + + +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSP---QTSW 497
Query: 359 IDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKH----LSGGEKMR 414
I P + + G S D + +D P++ +++ LSGG++ R
Sbjct: 498 IMPGTIKDNIIFGLSYDEYRYTSVIK-ACQLEEDIALFPEKDKTVLGEGGITLSGGQRAR 556
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFET-LDFLERTITQL 452
+AR + + + ++D P LD T + E + +L
Sbjct: 557 ISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 45.6 bits (109), Expect = 3e-05
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 290 ITKQYD-DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
+ K YD V+K L + GE I +VGP+G GK+TLL+++ G
Sbjct: 9 VRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52
Score = 39.8 bits (94), Expect = 0.002
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
G +++ + L + E I LVG +G GKSTLL++ AG+ SG
Sbjct: 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 45.5 bits (108), Expect = 4e-05
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVSHD 462
LSGG+K R +A +LA +FL+ DEPT LD E L+ + + + TI++V+HD
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD-NLNKQGKTIILVTHD 224
Query: 463 RD 464
D
Sbjct: 225 LD 226
Score = 44.3 bits (105), Expect = 9e-05
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI-------NSALIF 172
LS GQ R VAL +L PD L+ DEPT LD +E+L+I +I
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLD----PQGVKEILEIFDNLNKQGKTIIL 220
Query: 173 VSHD 176
V+HD
Sbjct: 221 VTHD 224
Score = 43.5 bits (103), Expect = 2e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 285 LEADKITKQYDDRL-----VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
++ I K ++ +L + + S+ I+ GE I I+G G+GKTT ++ L + PD G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 340 FI 341
I
Sbjct: 63 TI 64
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 45.2 bits (107), Expect = 5e-05
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 25/192 (13%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG----TNLKIATIDQK 355
V+ S + GE + +VG +G+GK+T + L ++ G I L +
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 356 REDI-----DPDKSLASYLTGSSGDSLM--------VRGES--RHVAGYIKDFLFHPDQA 400
R DI DP SL T GDS+M + G++ VA ++ P+ A
Sbjct: 400 RRDIQFIFQDPYASLDPRQT--VGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHA 457
Query: 401 HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTI---- 456
SGG++ R +AR LA +I DE + LD + + LQ
Sbjct: 458 WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAY 517
Query: 457 LIVSHDRDFLDR 468
L +SHD ++R
Sbjct: 518 LFISHDMAVVER 529
Score = 39.1 bits (91), Expect = 0.004
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 47/203 (23%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKST-------LLKIAAGITEPQSGNVFLHSSSR- 69
I ++++ S++ E + +VG +GSGKS LL+ A G Q + L SR
Sbjct: 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG--LVQCDKMLLRRRSRQ 86
Query: 70 -------------------LGYLEQNP--DLSHFSTISQYIDDTIK-----DTIEAPYSP 103
+ + Q P L+ T+ + I ++I+ EA
Sbjct: 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEA 146
Query: 104 YSLLKKFNLREQDRI-----ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHW 158
+L + + E I LS G + V + L RP +LI DEPT LD TI
Sbjct: 147 KRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDV-TIQA 205
Query: 159 MEQELLKI-----NSALIFVSHD 176
+L+K+ + +IF++HD
Sbjct: 206 QILQLIKVLQKEMSMGVIFITHD 228
Score = 33.3 bits (76), Expect = 0.20
Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 30/216 (13%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH-------SSSRLGYL 73
++ V + P E + LVG +GSGKST + + E Q G + + S +L L
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 74 EQNPDLSHFSTISQYID--DTIKDTIEAPYSPYSLLKKFNLREQ-----DRI-------- 118
++ F +D T+ D+I P + LL + +R+
Sbjct: 400 RRDIQFI-FQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW 458
Query: 119 ---ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS----ALI 171
S GQ + + + + L P ++I DE + LD + LL + A +
Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518
Query: 172 FVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFES 207
F+SHD +E +S + G + + A FE+
Sbjct: 519 FISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN 554
Score = 31.0 bits (70), Expect = 0.90
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ-----GTILIVSH 461
LSGG + R ++A L+ LI DEPT LD + + I LQ G I I +H
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFI-TH 227
Query: 462 D 462
D
Sbjct: 228 D 228
Score = 30.2 bits (68), Expect = 1.8
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKT-TLLKLL 330
V++ S + GE + IVG +G+GK+ T L L+
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALM 63
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 45.2 bits (107), Expect = 5e-05
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 43/232 (18%)
Query: 5 ILRLDHISA-----TIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
ILR+ ++ + L ++ + + + ++G +GSGKSTL+ G+ + +
Sbjct: 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY 80
Query: 60 GNVFL-------HSSSRLGYLEQNP-DLSHFSTISQYID--------DTIKDTIEAP--Y 101
G + + ++ + +F + + + KDTIE +
Sbjct: 81 GTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMF 140
Query: 102 SPYSL---------LKKFNLR----EQDRIE----NLSVGQTRCVALMKMLISRPDILIL 144
P +L L KF L + +E LS GQ R VA+ +L +P+ILI
Sbjct: 141 GPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIF 200
Query: 145 DEPTNHLDFRTIHWMEQELL---KINSALIFVSHDRRFLETLSTTTVWLDRG 193
DEPT LD + H M Q +L N + ++H + ++ + +D+G
Sbjct: 201 DEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252
Score = 39.8 bits (93), Expect = 0.002
Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 66/236 (27%)
Query: 280 SGKLVLEADKITKQYDDR-----LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKI 334
S ++L + +D++ + + + S + I+G +G+GK+TL+ G I
Sbjct: 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76
Query: 335 KPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYI---- 390
K G I +G I K+ +T + E R +
Sbjct: 77 KSKYGTIQVGDIY-----------IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP 125
Query: 391 ----------KDFLFHP-------DQAHSLMKH------------------LSGGEKMRA 415
KD +F P +A L K LSGG+K R
Sbjct: 126 EYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV 185
Query: 416 IVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-------QGTILIVSHDRD 464
+A +LA LI DEPT LD + E + QL T+ +++H +
Sbjct: 186 AIAGILAIQPEILIFDEPTAGLDPKG----EHEMMQLILDAKANNKTVFVITHTME 237
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 45.1 bits (107), Expect = 6e-05
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 48/225 (21%)
Query: 273 HLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL-- 330
++ ++ + A ++ Y ++ + D L I +GP+G GK+T L+ L
Sbjct: 8 AADKKATATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR 67
Query: 331 ----------TGKIKPDCGFITLGTNLKIATID--QKREDI-----DPD---KSL---AS 367
TGKI D G ++ +D + R + P+ KS+ +
Sbjct: 68 MNDTIDGCRVTGKITLD------GEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVA 121
Query: 368 Y------LTGSSGDSLMVRGESRHVAGY---IKDFLFHPDQAHSLMKHLSGGEKMRAIVA 418
Y L S + + S AG +KD L P LSGG++ R +A
Sbjct: 122 YGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTG------LSGGQQQRLCIA 175
Query: 419 RVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSH 461
R +A ++MDEP + LD +E I +L+ TI+IV+H
Sbjct: 176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220
Score = 28.5 bits (64), Expect = 5.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLK 49
L DV L I K +G +G GKST L+
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLR 63
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 45.1 bits (107), Expect = 6e-05
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
LSGG++ R +AR LA L+MDEPT+ LD + +E I +L+ TI+IV+H+
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN 204
Score = 33.9 bits (78), Expect = 0.11
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 44/193 (22%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLL-------------KIAAGI----TEPQSGNVF 63
L+ + L I+ + L+G +G GKST L KI + + ++
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 64 LHS-SSRLGYLEQNPDLSHFSTISQYIDDT---------IKDTIEAPYSPYSLLKKFNLR 113
++ R+G + Q P+ S I D IKD + LK L
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMS-----IYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW 133
Query: 114 EQ--DRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME-QEL--- 163
++ DR++ LS GQ + + + + L P++L++DEPT+ LD I ++ +EL
Sbjct: 134 DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD--PISTLKIEELIQE 191
Query: 164 LKINSALIFVSHD 176
LK + ++ V+H+
Sbjct: 192 LKKDYTIVIVTHN 204
Score = 32.0 bits (73), Expect = 0.42
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
Y D +K +L I + ++GP+G GK+T L+ L
Sbjct: 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTL 49
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 44.8 bits (106), Expect = 6e-05
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 14/67 (20%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ---------LQGTIL 457
LSGG + R +AR A + L+MDEP F LD L RT Q L TI+
Sbjct: 165 LSGGMQQRVGLARAFAMDADILLMDEP-----FSALDPLIRTQLQDELLELQAKLNKTII 219
Query: 458 IVSHDRD 464
VSHD D
Sbjct: 220 FVSHDLD 226
Score = 44.0 bits (104), Expect = 1e-04
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 37/187 (19%)
Query: 23 DVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNP----- 77
+ L I+ E L+G +GSGKS+LL+ G+ G+V + +
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDG----SIDVANCDA 97
Query: 78 -DLSHFST--ISQYIDD-------TIKDTI------------EAPYSPYSLLKKFNLRE- 114
L T +S T+++ + E L+ L +
Sbjct: 98 ATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW 157
Query: 115 QDR-IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL----KINSA 169
D+ LS G + V L + DIL++DEP + LD ++ ELL K+N
Sbjct: 158 ADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKT 217
Query: 170 LIFVSHD 176
+IFVSHD
Sbjct: 218 IIFVSHD 224
Score = 33.2 bits (76), Expect = 0.22
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 288 DKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
++I + + V + SL I GE ++G +G+GK++LL+ + G
Sbjct: 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNG 72
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 44.7 bits (106), Expect = 7e-05
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT-LGTNLKIATIDQ---K 355
V +LR++ GE +G+VG +G GK+T + + G +K G + LG +L D+
Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAV 96
Query: 356 REDI-----DPDKSLASYLTGSSGDSL----------MVRGESR-HVAGYIKDFLFHPDQ 399
R DI DP SL +T G+ + + R E + V + P+
Sbjct: 97 RSDIQMIFQDPLASLNPRMT--IGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL 154
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
+ SGG+ R +AR L +I DEP + LD
Sbjct: 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
Score = 34.7 bits (80), Expect = 0.064
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 37/187 (19%)
Query: 23 DVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHF 82
V L + E + +VG +G GKST + G+ + G V LG ++ + +
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG-MKDDEWRAVR 97
Query: 83 STISQYIDD---------TIKDTIEAP---YSPYSLLKKFNLREQDR--------IENL- 121
S I D TI + I P Y P L + ++++ + + NL
Sbjct: 98 SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPK--LSRQEVKDRVKAMMLKVGLLPNLI 155
Query: 122 -------SVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK-----INSA 169
S GQ + + + + LI P ++I DEP + LD +I LL+ + +
Sbjct: 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV-SIQAQVVNLLQQLQREMGLS 214
Query: 170 LIFVSHD 176
LIF++HD
Sbjct: 215 LIFIAHD 221
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 44.8 bits (107), Expect = 7e-05
Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 34/182 (18%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH-------SSS 68
I L +V L I E ++G +G+GKSTL++ + P SG V + S
Sbjct: 16 RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK 75
Query: 69 RL-------GYLEQNPDLSHFSTISQY-----------IDDTIKDTIEAPYSPYSLLKKF 110
L G + Q HF+ +S + T K I+A + LL+
Sbjct: 76 ELRKARRQIGMIFQ-----HFNLLSSRTVFDNVALPLELAGTPKAEIKARVTE--LLELV 128
Query: 111 NLREQ-DRI-ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS 168
L ++ DR LS GQ + VA+ + L S P +L+ DE T+ LD T + + L IN
Sbjct: 129 GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 169 AL 170
L
Sbjct: 189 EL 190
Score = 39.8 bits (94), Expect = 0.002
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 286 EADKITKQYD--DRLV--VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
E I+K + R + + + SL I GE G++G +GAGK+TL++ + +P G
Sbjct: 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60
Score = 37.9 bits (89), Expect = 0.007
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 398 DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQLQ 453
D+A LSGG+K R +AR LA L+ DE T+ LD T L+ L+ +L
Sbjct: 132 DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELG 191
Query: 454 GTILIVSHDRD 464
TI++++H+ D
Sbjct: 192 LTIVLITHEMD 202
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 44.6 bits (105), Expect = 7e-05
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 398 DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QGT 455
D H LSGG++ R +ARVLA + +++DEPT+ LD + +E + +L Q T
Sbjct: 140 DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYT 199
Query: 456 ILIVSHD 462
I++V+H
Sbjct: 200 IILVTHS 206
Score = 40.3 bits (94), Expect = 0.001
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 34/212 (16%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKI--------------------AAGIT 55
G + L+ + L E L+G +G GKST L+ I
Sbjct: 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75
Query: 56 EPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYI---------DDTIKD-TIEAPYSPYS 105
P V L ++G + Q P+ FS I D + D +E +
Sbjct: 76 APNEDVVQLRK--QVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA 133
Query: 106 LLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK 165
+ + + +LS GQ + V + ++L +PD+++LDEPT+ LD + +E LL+
Sbjct: 134 IWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193
Query: 166 INS--ALIFVSHDRRFLETLSTTTVWLDRGCL 195
+ +I V+H +S T + G L
Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
Score = 29.6 bits (66), Expect = 2.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 281 GKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
K ++ + + Y +K L + E ++GP+G GK+T L+ L
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTL 51
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 44.6 bits (105), Expect = 8e-05
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 34/216 (15%)
Query: 275 QTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT--- 331
+ Q+ + ++ + + Y ++ +K+ S++I ++GP+G GK+T ++ L
Sbjct: 3 EGVQNVAQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN 62
Query: 332 ---------GKI--------KPDCGFITLGTNLKIATIDQKRE----DIDPDKSLASYLT 370
GK+ +PD + L N + + QK I + + +
Sbjct: 63 DLIKNCRIEGKVSIEGEDIYEPDVDVVELRKN--VGMVFQKPNPFPMSIYDNVAYGPRIH 120
Query: 371 GSSGDSL--MVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFL 428
G++ L +V R A + + D+ S LSGG++ R +AR LA +
Sbjct: 121 GANKKDLDGVVENALRSAALWDET----SDRLKSPALSLSGGQQQRLCIARTLAVKPKII 176
Query: 429 IMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
+ DEPT+ LD + +E I L+ TI+IV+H+
Sbjct: 177 LFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
Score = 34.6 bits (79), Expect = 0.072
Identities = 47/239 (19%), Positives = 100/239 (41%), Gaps = 29/239 (12%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKI---------- 50
++ P +++++++ G L++V + I L+G +G GKST ++
Sbjct: 8 VAQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 51 ----------AAGITEPQSGNVFLHSSSRLGYLEQNP-------DLSHFSTISQYIDDTI 93
I EP V L + + + + NP ++++ I +
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 94 KDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF 153
+E +L + + R + +LS GQ + + + + L +P I++ DEPT+ LD
Sbjct: 128 DGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187
Query: 154 RTIHWMEQEL--LKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKK 210
+ +E + LK + ++ V+H+ + +S T + G L Q F + ++
Sbjct: 188 ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPRE 246
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 44.3 bits (105), Expect = 9e-05
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
LSGG++ R +AR +A + L+MDEP + LD + LE T+ +L+ TI+IV+H+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221
Score = 34.3 bits (79), Expect = 0.090
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSALIFVSHD 176
LS GQ + + + + + +PDIL++DEP + LD + +E+ + LK N +I V+H+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 44.1 bits (104), Expect = 1e-04
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 47/223 (21%)
Query: 281 GKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT---GKIKPD 337
G L + + Y D +K S+ I ++GP+G GK+T L+ L +IK
Sbjct: 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAA 101
Query: 338 C--GFITL--------GTNL-----KIATIDQK--------REDI--------DPDKSLA 366
G + L G NL ++ + Q RE+I D + L
Sbjct: 102 RIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLL 161
Query: 367 SYLTGSSGDSL---MVRGESRHVA--GYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVL 421
+ L G +V R A + D L D A L SGG++ R +AR L
Sbjct: 162 ARLLGRDDKDAEDELVERSLRQAALWDEVNDRL--DDNALGL----SGGQQQRLCIARCL 215
Query: 422 AQPFNFLIMDEPTNDLDFETLDFLERTITQL--QGTILIVSHD 462
A ++MDEP + LD +E I +L + T+++V+H+
Sbjct: 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN 258
Score = 30.2 bits (68), Expect = 1.6
Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 42/190 (22%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLK--------IAAGIT 55
L ++ + G L+ V + I K L+G +G GKST L+ I A
Sbjct: 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI 103
Query: 56 EP----------QSGNVFLHSSSRLGYLEQNPDLSHFSTISQYI---------------- 89
+ Q G + R+G + Q+P+ +I + I
Sbjct: 104 DGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN-PFPKSIRENISYGPRKHGDINTGLLA 162
Query: 90 -------DDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDIL 142
D + +E +L + N R D LS GQ + + + + L P+++
Sbjct: 163 RLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVI 222
Query: 143 ILDEPTNHLD 152
++DEP + LD
Sbjct: 223 LMDEPASALD 232
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 43.6 bits (103), Expect = 1e-04
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
IKD H D S L+ GE + ++A LA LI DEPTN ++ T + R +
Sbjct: 145 IKD---HKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLL 201
Query: 450 TQLQ----GTILIVSHD 462
T+L TIL++SHD
Sbjct: 202 TRLNQNNNTTILLISHD 218
Score = 33.6 bits (77), Expect = 0.17
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 47/189 (24%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGY-LEQN 76
IDLL+ + P+ER LVG N ++ EPQS L S R+G L QN
Sbjct: 73 IDLLR-----LSPRERRKLVGHN---------VSMIFQEPQS---CLDPSERVGRQLMQN 115
Query: 77 -PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN-----LSVGQTRCVA 130
P ++ Q + IE LL + +++ L+ G+ + V
Sbjct: 116 IPGWTYKGRWWQRFGWRKRRAIE-------LLHRVGIKDHKDAMRSFPYELTEGECQKVM 168
Query: 131 LMKMLISRPDILILDEPTNHLD-------FRTIHWMEQELLKINSALIFVSHDRRFLETL 183
+ L ++P +LI DEPTN ++ FR + + Q N+ ++ +SHD L+ L
Sbjct: 169 IAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ---NNNTTILLISHD---LQML 222
Query: 184 STTTVWLDR 192
S W D+
Sbjct: 223 SQ---WADK 228
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.7 bits (103), Expect = 1e-04
Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 41/214 (19%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLL-------------KIAA-------GIT 55
G +L D+ L I +E +G +G GKST L K+ +
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 56 EPQSGNVFLHSSSRLGYLEQNP-------------DLSHFSTISQYIDDTIKDTIEAPYS 102
+ V L + + + + NP L + + +D+ ++ ++ +
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSL----T 131
Query: 103 PYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME-- 160
L ++ R +D LS GQ + + + + + +P +L++DEP + LD + +E
Sbjct: 132 SVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL 191
Query: 161 -QELLKINSALIFVSHDRRFLETLSTTTVWLDRG 193
QE LK N +I V+H + + +S + G
Sbjct: 192 IQE-LKKNFTIIVVTHSMKQAKKVSDRVAFFQSG 224
Score = 40.6 bits (95), Expect = 0.001
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSH 461
LSGG++ R +AR +A L+MDEP + LD + +E I +L+ TI++V+H
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTH 206
Score = 30.2 bits (68), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLK 328
Y + ++ D +L I+ E +GP+G GK+T L+
Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLR 49
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 43.5 bits (102), Expect = 2e-04
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 33/206 (16%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT------GKIKPDC 338
++ ++ Y+ ++ S+ I+ + I+GP+G GK+T +K L G +K +
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67
Query: 339 GFITLGTNLKIATIDQKR--------------------EDIDPDKSLASYLTGSSGDSLM 378
G N+ I+ R E++ +++ L + D ++
Sbjct: 68 VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIV 127
Query: 379 VRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
ES + + D+ + LSGG++ R +AR LA L+MDEP + LD
Sbjct: 128 ---ESALKGAALWQEV--KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
Query: 439 FETLDFLERTITQLQG--TILIVSHD 462
+E I L+ TI IV+H+
Sbjct: 183 PIATMKVEELIHSLRSELTIAIVTHN 208
Score = 35.4 bits (81), Expect = 0.040
Identities = 38/204 (18%), Positives = 87/204 (42%), Gaps = 30/204 (14%)
Query: 3 LPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ---- 58
+P +++ +S ++ + + I + ++G +G GKST +K I+E +
Sbjct: 5 IPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 59 -SGNVFLHSSS-------------RLGYLEQNPD---LSHFSTISQYIDDTIK------- 94
G V + ++G + Q P+ +S + ++ + + K
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 95 DTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR 154
+ +E+ +L ++ + LS GQ + + + + L +P +L++DEP + LD
Sbjct: 125 EIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184
Query: 155 TIHWMEQELLKINSALI--FVSHD 176
+E+ + + S L V+H+
Sbjct: 185 ATMKVEELIHSLRSELTIAIVTHN 208
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.1 bits (101), Expect = 2e-04
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT------------GKIKPDCGFI 341
Y V+K+ ++ + I+GP+G GK+TLL+ L G + D I
Sbjct: 14 YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73
Query: 342 TLGTNLKIATIDQK-----------REDIDPDKSLASYLTGSSGDSLM--VRGESRHVAG 388
NL + + ++ + I + + + G++ S + V +S A
Sbjct: 74 -YSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAA 132
Query: 389 YIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
+ D H LSGG++ R +ARVLA ++MDEP + LD + +E
Sbjct: 133 LWDEV---KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL 189
Query: 449 ITQLQG--TILIVSHD 462
+ +L+ TI IV+H+
Sbjct: 190 MQELKQNYTIAIVTHN 205
Score = 31.2 bits (70), Expect = 0.72
Identities = 37/187 (19%), Positives = 82/187 (43%), Gaps = 30/187 (16%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG------------NVF---- 63
+L+++ + ++ ++G +G GKSTLL+ + + SG N++
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 64 --LHSSSRLGYLEQNPD---LSHFSTIS-------QYIDDTIKDTIEAPYSPYSLLKKFN 111
++ R+G + Q P+ S F ++ + + +E +L +
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 112 LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSA 169
LS GQ + + + ++L P+++++DEP + LD + +E+ + LK N
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYT 198
Query: 170 LIFVSHD 176
+ V+H+
Sbjct: 199 IAIVTHN 205
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 43.2 bits (102), Expect = 2e-04
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
LSGG++ R +AR LA L+MDEP + LD +E I +L+ TI+IV+H+
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207
Score = 32.8 bits (75), Expect = 0.26
Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 34/218 (15%)
Query: 10 HISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKI------------------- 50
+S G L D+ L + + L+G +G GKST L+
Sbjct: 11 GLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70
Query: 51 -AAGITEPQSGNVFLHSSSRLGYLEQNPD---LSHFSTISQYI-------DDTIKDTIEA 99
I +P V L R+G + Q P+ S F ++ + + + +E
Sbjct: 71 DGENIYDPHVDVVELRR--RVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVER 128
Query: 100 PYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWM 159
+L + R + LS GQ + + + + L P++L++DEP + LD +
Sbjct: 129 SLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI 188
Query: 160 EQ--ELLKINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
E+ LK +I V+H+ + +S T + G L
Sbjct: 189 EELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKL 226
Score = 32.4 bits (74), Expect = 0.33
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
+EA ++ Y D + D SL + ++GP+G GK+T L+ L
Sbjct: 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCL 52
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 43.2 bits (102), Expect = 2e-04
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD-FETLDFLERTITQL--QGTILIVSHD 462
LSGG++ R +AR +A + L+MDEP + LD TL +E I +L TI+IV+H+
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA-IEDLINELKQDYTIVIVTHN 206
Score = 35.5 bits (82), Expect = 0.043
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 51/187 (27%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLK--------IAAGITEP 57
+ + ++ G ++DV L+I+P+ +G +G GKST+L+ I E
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVE- 63
Query: 58 QSGNVFLHSS-------------SRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPY 104
G V L +G + Q P+ F T+S I+D + A
Sbjct: 64 --GEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN--PFPTMS------IRDNVVAGLKLN 113
Query: 105 SLLKKFNLRE---------------QDRIEN----LSVGQTRCVALMKMLISRPDILILD 145
+ K +L E +DR++ LS GQ + + + + + PD+L++D
Sbjct: 114 GVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 146 EPTNHLD 152
EP + LD
Sbjct: 174 EPCSALD 180
Score = 30.8 bits (70), Expect = 0.92
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
Y V+D +L I +GP+G GK+T+L+ L
Sbjct: 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL 50
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 42.7 bits (100), Expect = 3e-04
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 30/221 (13%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKI------------AA 52
I+ + + G + L + L + KE L+G +G GKST L+
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 53 GITEPQSGNVF------LHSSSRLGYLEQNPDLSHFST---------ISQYID-DTIKDT 96
G + + N++ + +G + Q P FS I+ D + I
Sbjct: 64 GEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR 123
Query: 97 IEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTI 156
+E ++ K+ + S GQ + + + + L RP +++LDEPT+ LD +
Sbjct: 124 VEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183
Query: 157 HWMEQEL--LKINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
+E+ L LK I V+H+ + +S T +L G L
Sbjct: 184 SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224
Score = 39.2 bits (91), Expect = 0.003
Identities = 63/265 (23%), Positives = 100/265 (37%), Gaps = 71/265 (26%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL----------- 330
+ ++ A + Y + + SL E ++GP+G GK+T L+ L
Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 331 -TGKIK-----------------PDCGFI-------------TLGTNLKIATIDQKREDI 359
TG+IK + G + + LKIA +
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVK------ 115
Query: 360 DPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVAR 419
DK L S + E+ KD L QA SGG++ R +AR
Sbjct: 116 --DKELIDQRVEESLKQAAIWKET-------KDNLDRNAQA------FSGGQQQRICIAR 160
Query: 420 VLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QGTILIVSHDRDFLDRTVTSTIAAQ 477
LA +++DEPT+ LD + +E T+ +L Q T ++V+H+ R I+ Q
Sbjct: 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR-----ISDQ 215
Query: 478 NIEDPNGYWIKYAGGYSDMLVQQKK 502
NG I+ G +M + KK
Sbjct: 216 TAFLMNGDLIEA-GPTEEMFIAPKK 239
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 42.5 bits (100), Expect = 3e-04
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 398 DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QGT 455
DQ S LSGG++ R +AR +A ++MDEP + LD +E I +L + T
Sbjct: 172 DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYT 231
Query: 456 ILIVSHD 462
++IV+H+
Sbjct: 232 VVIVTHN 238
Score = 37.5 bits (87), Expect = 0.012
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 265 SFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKT 324
+ T SSG+ V+EA + Y D + D S+ I + ++GP+G GK+
Sbjct: 20 TATDTTDPSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKS 79
Query: 325 TLLK 328
T L+
Sbjct: 80 TFLR 83
Score = 34.4 bits (79), Expect = 0.088
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 32/178 (17%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLK--------IAAGIT 55
++ ++ G L DV + I + ++G +G GKST L+ I A
Sbjct: 38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV 97
Query: 56 EPQSGNVFLHSSS-------------RLGYLEQNPD---LSHFSTIS-----QYIDDTIK 94
E G + + R+G + Q P+ S + ++ Q D I
Sbjct: 98 E---GELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154
Query: 95 DTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+ +E +L + + +LS GQ + + + + + P+++++DEP + LD
Sbjct: 155 ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 42.3 bits (99), Expect = 4e-04
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 277 TQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
+++ + + DKI Y + + V+D + I E G +GP+G GK+T+L+ L
Sbjct: 3 SEAPIVMDCKLDKIF--YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDL 60
Query: 337 DCGFIT------LGTNLKIATIDQK--REDIDPDKSLASYLTGSSGDSLMVRGESRHVAG 388
GF LG ++ +D R I + + S D++ G
Sbjct: 61 VKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKG 120
Query: 389 YIKDFLFHPDQAHSLMKH-----------LSGGEKMRAIVARVLAQPFNFLIMDEPTNDL 437
+ D + H Q +L LSGG++ R +AR +A L++DEP + L
Sbjct: 121 DLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL 180
Query: 438 DFETLDFLERTITQLQG--TILIVSHD 462
D +E + +L+ TI +V+H+
Sbjct: 181 DPIATRRVEELMVELKKDYTIALVTHN 207
Score = 31.5 bits (71), Expect = 0.70
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSALIFVSHD- 176
+LS GQ + + + + + + P++L+LDEP + LD +E+ + LK + + V+H+
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNM 208
Query: 177 ---RRFLETLSTTTVWLDRG 193
R +T + +V + +G
Sbjct: 209 QQAIRVADTTAFFSVDISQG 228
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 42.3 bits (100), Expect = 4e-04
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD-FETLDFLERTITQL--QGTILIVSH 461
LSGG++ R ++AR +A L++DEPT+ LD TL +E IT+L + TI+IV+H
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLK-IEELITELKSKYTIVIVTH 225
Score = 36.9 bits (86), Expect = 0.014
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLK 328
LE + Y D+ + D S+RI +GP+G GK+TLL+
Sbjct: 26 LEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLR 69
Score = 30.0 bits (68), Expect = 1.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLK 49
L + +++ G L D+ + I +G +G GKSTLL+
Sbjct: 24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLR 69
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 41.6 bits (97), Expect = 6e-04
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHDRD 464
LSGG++ R +AR +A L+MDEPT+ LD +E I +L+ +I+IV+H
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTH--- 282
Query: 465 FLDRTVTSTIAAQNIEDPNGY----WIKYAGGYSDMLVQQK 501
S AQ I D + WI+ AG + + K
Sbjct: 283 -------SMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK 316
Score = 39.3 bits (91), Expect = 0.003
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITE-----PQSGNVF----------- 63
+L D+ L IK + +G +G GKST L+ + + G ++
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 64 --LHSSSRLGYLEQNP---DLSHFSTIS-----QYIDD--TIKDTIEAPYSPYSLLKKFN 111
L +R+G + Q P ++S F ++ I+D ++ +E +L +
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 112 LREQDRIEN-LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS-- 168
+ D+ N LS GQ + + + + + P++L++DEPT+ LD +E+ +L++
Sbjct: 217 -DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKY 275
Query: 169 ALIFVSHDRRFLETLSTTTVWLDRG 193
++I V+H + +S TV+ +G
Sbjct: 276 SIIIVTHSMAQAQRISDETVFFYQG 300
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 41.0 bits (96), Expect = 9e-04
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKI------------AAGITEPQSGNVFLHSSS 68
L+++ L I E ++G +G GKST +K G + N+F S S
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 69 ------RLGYLEQNPD---------LSHFSTISQYIDDTIKDTI-EAPYSPYSLLKKFNL 112
+G + Q P+ +++ I D D I E ++ +
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD 159
Query: 113 REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ--ELLKINSAL 170
R D LS GQ + + + + L PD++++DEPT+ LD + +E+ + LK + ++
Sbjct: 160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSI 219
Query: 171 IFVSHDRRFLETLSTTTVWLDRGCLHHLD 199
I V+H+ + +S T + G ++ D
Sbjct: 220 IIVTHNMQQAARISDKTAFFLNGYVNEYD 248
Score = 40.6 bits (95), Expect = 0.001
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 398 DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD-FETLDFLERTITQLQG-- 454
D+ H LSGG++ R +AR LA + ++MDEPT+ LD TL +E + +L+
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLK-VEELVQELKKDY 217
Query: 455 TILIVSHD 462
+I+IV+H+
Sbjct: 218 SIIIVTHN 225
Score = 33.3 bits (76), Expect = 0.21
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 279 SSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
+ K+V + + Y + +K+ +L IH E I+GP+G GK+T +K L
Sbjct: 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTL 70
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 40.9 bits (96), Expect = 0.001
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS-----------S 67
L++V ++KP + + + G GSGKSTLL + + G++ H
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 68 SRLGYLEQNPDLSHFS-TISQYI----DDTIKDTIEAPYSPYS-------LLKKFNLREQ 115
SRL + Q P L FS T++ I D + IE S L + ++
Sbjct: 389 SRLAVVSQTPFL--FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446
Query: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
+R LS GQ + +++ + L+ +ILILD+ + +D RT H + L
Sbjct: 447 ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL 494
Score = 37.0 bits (86), Expect = 0.013
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
D +++ + + G+ +GI GP G+GK+TLL L+
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 40.7 bits (96), Expect = 0.001
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 38/189 (20%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLE------ 74
L V +++ + + +VG +G GKSTL ++ I P G ++ L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 75 --------QNP--DLSHFSTISQYIDDTIKDTIEAPYSP-------YSLLKKFNLREQ-- 115
QNP L+ + Q +++ + I S +++ K LR +
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLL--INTSLSAAERREKALAMMAKVGLRPEHY 148
Query: 116 DRIENL-SVGQTRCVALMKMLISRPDILILDEPTNHLDF----RTIHWM---EQELLKIN 167
DR ++ S GQ + +A+ + L+ PD+++ DEP + LD + ++ M +QEL
Sbjct: 149 DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL---G 205
Query: 168 SALIFVSHD 176
+ +F+SHD
Sbjct: 206 LSYVFISHD 214
Score = 38.8 bits (91), Expect = 0.005
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 65/205 (31%)
Query: 280 SGKLVLEADKITKQYD--------DRLV--VKDFSLRIHYGECIGIVGPNGAGKTTLLKL 329
S + +L+A + K Y +RLV + S + G+ + +VG +G GK+TL +L
Sbjct: 1 SQQPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARL 60
Query: 330 LTGKIKPDCGFITL-GTNLKIA---TIDQKREDI-----DPDKSLASYLTGSSGDSLMVR 380
LT P G + G +L A R+ I +P SL
Sbjct: 61 LTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL--------------- 105
Query: 381 GESRHVAGYIKDFLFHP-------------DQAHSLMKHL--------------SGGEKM 413
R G I L P ++A ++M + SGG++
Sbjct: 106 -NPRKKVGQI---LEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161
Query: 414 RAIVARVLAQPFNFLIMDEPTNDLD 438
R +AR L + ++ DEP + LD
Sbjct: 162 RIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 39.7 bits (93), Expect = 0.002
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 44/170 (25%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAG------ITEPQ--SGNVFLHSS--SR 69
+L +V +KP L+G +G+GK+TLL + A IT L SS
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837
Query: 70 LGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPY-SLLKKFNLREQDRI---------- 118
+GY++Q DL H T T+++++ +S Y K + E+
Sbjct: 838 IGYVQQQ-DL-HLPTS------TVRESLR--FSAYLRQPKSVSKSEKMEYVEEVIKLLEM 887
Query: 119 ------------ENLSVGQTRCVALMKMLISRPDILI-LDEPTNHLDFRT 155
E L+V Q + + + L+++P +L+ LDEPT+ LD +T
Sbjct: 888 ESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
Score = 37.0 bits (86), Expect = 0.014
Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 41/174 (23%)
Query: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGY--LEQN 76
D+L+ + IKP E ++G GSG STLLK A T+ V + Y +
Sbjct: 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGV----EGVITYDGITPE 130
Query: 77 PDLSHFSTISQYIDD--------TIKDTIE------APYSPYSLLKKFNLREQ------- 115
H+ Y + T+ +T++ P + + + +
Sbjct: 131 EIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMA 190
Query: 116 --------------DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
D + +S G+ + V++ + + I D T LD T
Sbjct: 191 TYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT 244
Score = 35.9 bits (83), Expect = 0.029
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 18/79 (22%)
Query: 408 SGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET-LDFLE--RTITQLQGTILIVSHDRD 464
SGGE+ R +A D T LD T L+F+ +T +
Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSA-------------N 257
Query: 465 FLDRTVTSTI--AAQNIED 481
LD T I +Q+ +
Sbjct: 258 ILDTTPLVAIYQCSQDAYE 276
Score = 33.9 bits (78), Expect = 0.13
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNL 347
+ R+++ + + G ++G +GAGKTTLL +L ++ G IT G L
Sbjct: 774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV--TTGVITGGDRL 824
Score = 32.4 bits (74), Expect = 0.36
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKI 334
L+ + TK +D ++K I GE ++G G+G +TLLK +
Sbjct: 65 LKKFRDTKTFD---ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNT 111
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 39.8 bits (93), Expect = 0.002
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 33/153 (21%)
Query: 20 LLQDVCLSIKPKERICLV-GCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPD 78
LL+DV +S+ P+ ++ +V G GSGKSTLL+ E G V+ S + Y+ Q
Sbjct: 675 LLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS--IAYVPQQAW 731
Query: 79 LSHFSTISQYIDDTIKDTI-----EAPYSPYSLLKKFNLREQDRIE-------------- 119
+ ++ T++ I E ++ L E D +
Sbjct: 732 I---------MNATVRGNILFFDEEDAARLADAVRVSQL-EADLAQLGGGLETEIGEKGV 781
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
NLS GQ V+L + + + D+ +LD+P + LD
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Score = 38.6 bits (90), Expect = 0.005
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 31/159 (19%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH----SSSRLGYLEQ 75
+L+ V I P+E++ +VG GSGKSTLL + E G + ++ + L L +
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 76 NPDLSHFSTISQ---YIDDTIKDTIE-----APYSPYSLLKKFNLREQDRIE-------- 119
FS I Q D T++ ++ + ++ L+ LRE+ E
Sbjct: 1385 -----QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRV 1439
Query: 120 -----NLSVGQTRCVALMKMLISRPDILIL-DEPTNHLD 152
N SVGQ + + + + L+ + IL DE T ++D
Sbjct: 1440 LEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478
Score = 37.1 bits (86), Expect = 0.014
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 298 LVVKDFSLRIHYGECIGIVGPNGAGKTTLL 327
LV++ S RI E +GIVG G+GK+TLL
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
Score = 28.6 bits (64), Expect = 4.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
LSGG+K R +AR + + ++D+P + LD
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 39.5 bits (92), Expect = 0.003
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
LSGG++ R +AR LA +++DEPT+ LD +E+ + +L TI+IV+H+
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
Score = 38.0 bits (88), Expect = 0.007
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLK 328
++E + + Y ++ VK+ +++I + I+GP+G GKTTLL+
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLR 47
Score = 34.5 bits (79), Expect = 0.075
Identities = 44/214 (20%), Positives = 92/214 (42%), Gaps = 50/214 (23%)
Query: 3 LPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITE-----P 57
PI+ +++ SA G +++V + I + ++G +G GK+TLL+ + +
Sbjct: 1 EPIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 58 QSGNVFLHSS-------------SRLGYLEQNP---DLSHFSTIS-----------QYID 90
G ++ ++G + Q P +S + ++ +D
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 91 DTIKDTIEAPYSPYSLLKKFNLREQDRIE------NLSVGQTRCVALMKMLISRPDILIL 144
++++ LKK L ++ + E LS GQ + + + + L P++++L
Sbjct: 121 RIVEES----------LKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILL 170
Query: 145 DEPTNHLDFRTIHWMEQ--ELLKINSALIFVSHD 176
DEPT+ LD +E+ E L N ++ V+H+
Sbjct: 171 DEPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 39.5 bits (92), Expect = 0.003
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 407 LSGGEKM------RAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQLQG-- 454
LSGGEK R VA+ L + LIMDEPT LD + D +E ++
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861
Query: 455 TILIVSHDRDFL 466
++++SH R+ L
Sbjct: 862 QVIMISHHRELL 873
Score = 28.3 bits (63), Expect = 5.6
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 525 EKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLISNEGKEIHQLYHDLD 584
EK K R Y + + + E +KI+ + D + NE K+ H Y ++
Sbjct: 497 EKIVDLKKRKEYLESEEINKSINEYNKIE----SARADLEDIKIKINELKDKHDKYEEIK 552
Query: 585 QMY-----QDVKEKEEQWLTL 600
Y +D+ K WL
Sbjct: 553 NRYKSLKLEDLDSKRTSWLNA 573
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 39.2 bits (91), Expect = 0.003
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
LSGG++ R +AR +A ++MDEP + LD + +E I +L+ TI+IV+H+
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
Score = 33.4 bits (76), Expect = 0.16
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
+E + + +DD ++K+ +L I ++GP+G GK+T ++ L
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49
Score = 28.8 bits (64), Expect = 4.8
Identities = 37/187 (19%), Positives = 81/187 (43%), Gaps = 30/187 (16%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITE-----PQSGNVFLHSS------- 67
+L++V L I L+G +G GKST ++ + + G+++L
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 68 ------SRLGYLEQNPD---------LSHFSTISQYID-DTIKDTIEAPYSPYSLLKKFN 111
++G + Q P+ +++ I D D I++ +E +L +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 112 LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSA 169
+ LS GQ + + + + + P+++++DEP + LD + +E + LK +
Sbjct: 138 DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYT 197
Query: 170 LIFVSHD 176
++ V+H+
Sbjct: 198 IVIVTHN 204
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 39.3 bits (92), Expect = 0.003
Identities = 60/200 (30%), Positives = 91/200 (45%), Gaps = 47/200 (23%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKT----TLLKLLT--GKIKPDCGF----ITLGTNLKI 349
V D + + GE +GIVG +G+GK+ L+ LL G+I F I NL
Sbjct: 32 VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL---NLPE 88
Query: 350 ATIDQKR-EDI-----DPDKSLASYLTGSSGDSLMV-----RGESRHVA--GYIK--DFL 394
+++ R E I DP SL Y+ G+ LM +G S+ A ++ D +
Sbjct: 89 KELNKLRAEQISMIFQDPMTSLNPYM--RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV 146
Query: 395 FHPDQAHSLMK----HLSGGEKMRAIVAR-VLAQPFNFLIMDEPTNDLD-------FETL 442
P +A MK SGG + R ++A +L +P LI DEPT LD L
Sbjct: 147 KMP-EARKRMKMYPHEFSGGMRQRVMIAMALLCRP-KLLIADEPTTALDVTVQAQIMTLL 204
Query: 443 DFLERTITQLQGTILIVSHD 462
+ L+R + I++++HD
Sbjct: 205 NELKR---EFNTAIIMITHD 221
Score = 35.5 bits (82), Expect = 0.038
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 135 LISRPDILILDEPTNHLDFRTIHWMEQELL-----KINSALIFVSHD 176
L+ RP +LI DEPT LD T+ LL + N+A+I ++HD
Sbjct: 176 LLCRPKLLIADEPTTALDV-TVQAQIMTLLNELKREFNTAIIMITHD 221
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 549
Score = 39.1 bits (91), Expect = 0.003
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRL 70
L ++ + E + ++G NGSGKSTL + AG+T P G V + S+ L
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL 89
Score = 35.3 bits (81), Expect = 0.049
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 304 SLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
S + GE +GI+G NG+GK+TL L+ G P+ G +
Sbjct: 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 39.2 bits (91), Expect = 0.003
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
LSGG++ R +AR +A + ++MDEPT+ LD + +E + +L+ TI+IV+H+
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205
Score = 31.5 bits (71), Expect = 0.67
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
K+ +E+ + Y ++ + D +L I+ + ++GP+G GK+T L+ L
Sbjct: 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCL 50
Score = 31.1 bits (70), Expect = 0.90
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSALIFVSHD 176
LS GQ + + + + + +PD++++DEPT+ LD + +E + LK ++ V+H+
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 38.8 bits (90), Expect = 0.004
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS------------ 68
L + L+ K + C++G GSGKST++++ G+ ++G + +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 69 ----RLGYLEQNPDLSHFS-TISQYID----DTIKDTIEAPYSPYSLLKKFNLREQDRIE 119
+G + Q P+ F TI + I + ++ EA LLK L E
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKR 146
Query: 120 N---LSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+ LS GQ R VAL ++ + L+LDEPT LD
Sbjct: 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
Score = 38.5 bits (89), Expect = 0.005
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVSHD 462
LSGG+K R +A ++A N L++DEPT LD + ++ ER + + I++V+H+
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 463 RDFLDRTVTSTI 474
D + R I
Sbjct: 211 MDQVLRIADEVI 222
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 38.8 bits (91), Expect = 0.004
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSHD 462
LSGG++ R +AR +A L++DEP + LD + +E IT+L+ T++IV+H+
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214
Score = 33.1 bits (76), Expect = 0.24
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL 330
Y +K+ +L I + +GP+G GK+TLL+
Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
Score = 30.7 bits (70), Expect = 0.99
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 121 LSVGQTR--CVALMKMLISRPDILILDEPTNHLD 152
LS GQ + C+A + + RP++L+LDEP + LD
Sbjct: 157 LSGGQQQRLCIA--RGIAIRPEVLLLDEPCSALD 188
Score = 28.1 bits (63), Expect = 6.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKI 50
L+++ L I + +G +G GKSTLL+
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 38.3 bits (89), Expect = 0.006
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 56/177 (31%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNP 77
+ LL++V + +P L+G +G+GK+TL+ + AG ++G GY+E +
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTG----------GYIEGDI 939
Query: 78 DLS-------HFSTISQYIDDTIKDTIEAP---------YSPYSLLKK------------ 109
+S F+ IS Y + I +P YS + L K
Sbjct: 940 RISGFPKKQETFARISGYCEQN---DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVD 996
Query: 110 --FNLREQDRIEN----------LSVGQTRCVALMKMLISRPDILILDEPTNHLDFR 154
L E D +++ LS Q + + + L++ P I+ +DEPT+ LD R
Sbjct: 997 EVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053
Score = 31.4 bits (71), Expect = 0.63
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 403 LMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILI 458
+++ +SGG+K R ++ P L MDE + LD ++ + L++ + + T+L+
Sbjct: 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392
Score = 30.2 bits (68), Expect = 1.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
++KD S I ++GP +GKTTLL L GK+ P
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDP 217
Score = 30.2 bits (68), Expect = 1.7
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 31/118 (26%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ---SGNVFLHSSSRL------ 70
+L+D IKP L+G SGK+TLL AG +P SG + ++ RL
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI-TYNGYRLNEFVPR 238
Query: 71 ---GYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSP--------YSLLKKFNLREQDR 117
Y+ QN D+ H + T+K+T++ +S Y LL + RE+D
Sbjct: 239 KTSAYISQN-DV-HVGVM------TVKETLD--FSARCQGVGTRYDLLSELARREKDA 286
Score = 28.7 bits (64), Expect = 4.7
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 295 DDRL-VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333
+DRL ++++ + G ++G +GAGKTTL+ +L G+
Sbjct: 890 EDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 37.8 bits (88), Expect = 0.009
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL-----KINSALIFVSH 175
LS G ++ V + + RP +LI DEPT LD TI ELL K N AL+ ++H
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDV-TIQAQIIELLLELQQKENMALVLITH 212
Query: 176 D 176
D
Sbjct: 213 D 213
Score = 32.8 bits (75), Expect = 0.29
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKT----TLLKLLT--GKIKPDCGFITLGTNLKIATID 353
V S + GE +GIVG +G+GK+ ++ L+ G++ + G +L+ +
Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE-KLEFNGQDLQRISEK 81
Query: 354 QKREDI---------DPDKSL-ASYLTGSS-GDSLMV-----RGESRHVAGYIKDFLFHP 397
++R + DP SL Y G +++ V + R A + + + P
Sbjct: 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIP 141
Query: 398 DQAHSL---MKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLERTIT 450
D A L LSGG R ++A +A LI DEPT LD + ++ L
Sbjct: 142 DPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201
Query: 451 QLQGTILIVSHD 462
+ +++++HD
Sbjct: 202 KENMALVLITHD 213
>gnl|CDD|184251 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 37.6 bits (88), Expect = 0.011
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPD----CGFITLG-------TNLKIATIDQKREDI 359
IGI GP G GKTTL+ + +K + GF T KI +D E I
Sbjct: 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGI 60
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 37.2 bits (86), Expect = 0.015
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 514 AQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQIN--DQNLISN 571
+++L++E + + K++ RK R Q+ ER QE+ +I+ ++TE+ ++ D+NL S
Sbjct: 66 SKALKKELLLEAKEEARKYREEIEQEFKSER--QELKQIESRLTERATSLDRKDENLSSK 123
Query: 572 EGKEIHQLYHDLDQMYQDVKEKEEQWLTLEIMQEEE 607
E K + L + + E+EEQ LE ++ E
Sbjct: 124 E-KTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAE 158
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 35.9 bits (83), Expect = 0.030
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333
+D+ +++ +L + GE I+GPNG+GK+TL L G+
Sbjct: 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50
Score = 35.2 bits (81), Expect = 0.046
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 46/216 (21%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ--SGNV 62
+L + + ++ +L+ + L ++P E ++G NGSGKSTL AG + + G V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 63 F--------LHSSSRLG--------YLEQNPDLS-HF------STISQYID--------- 90
L R G Y + P +S F + + Y
Sbjct: 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 91 -DTIKDTIEAPYSPYSLL-KKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPT 148
D +++ I P LL + N+ S G+ + +++M + P++ ILDE
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNV-------GFSGGEKKRNDILQMAVLEPELCILDESD 173
Query: 149 NHLDFRTIHWMEQ---ELLKINSALIFVSHDRRFLE 181
+ LD + + L + I V+H +R L+
Sbjct: 174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILD 209
Score = 28.6 bits (64), Expect = 4.6
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 408 SGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG---TILIVSHDRD 464
SGGEK R + ++ I+DE + LD + L + + L+ + +IV+H +
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206
Query: 465 FLD 467
LD
Sbjct: 207 ILD 209
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 35.4 bits (82), Expect = 0.046
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 130 ALMKMLISRPDILILDEPTNHLD----FRTIHWMEQELLKINSALIFVSHD 176
AL L +LILDEPT LD + + ME+ L KI +I VSHD
Sbjct: 804 ALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKI-PQVIIVSHD 853
Score = 31.2 bits (71), Expect = 0.79
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 524 KEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLISNEGKEIHQLYHDL 583
E+ + + L RL +EI+ I+ +I E E++ + + KE+ + +L
Sbjct: 302 YEEYLDELREI----EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
Query: 584 D---QMYQDVKEKEEQ 596
+ ++Y++ K K+E+
Sbjct: 358 EERHELYEEAKAKKEE 373
Score = 30.4 bits (69), Expect = 1.4
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 407 LSGGEKM------RAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQLQGTI 456
LSGGE++ R ++ LA LI+DEPT LD E +D +ER + ++ I
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVI 848
Query: 457 LIVSHDRDFLD 467
IVSHD + D
Sbjct: 849 -IVSHDEELKD 858
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 35.0 bits (81), Expect = 0.057
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 405 KHLSGGEK------MRAIVARVLAQ------PFNFLIMDEPTNDLDFETLDFLERTITQL 452
+ LSGGE+ +R + R+LA+ P LI+DEPT LD + L + +
Sbjct: 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESM 839
Query: 453 Q----GTILIVSHDRDFLD 467
+ I++VSHD + +
Sbjct: 840 RRLGVEQIVVVSHDDELVG 858
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 34.2 bits (79), Expect = 0.090
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 407 LSGGEKMRAIVARVLAQPFN---FLIMDEPTNDLDFET----LDFLERTITQLQGTILIV 459
LSGGE R +A+ L++ I+DEPT L F+ L+ L+R + Q T++++
Sbjct: 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVI 887
Query: 460 SHDRD 464
H+ D
Sbjct: 888 EHNLD 892
Score = 30.8 bits (70), Expect = 0.99
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLL 48
L+++ +SI C+ G +GSGKSTL+
Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTLI 650
>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component. Nup88 can be divided
into two structural domains; the N-terminal two-thirds
of the protein has no obvious structural motifs but is
the region for binding to Nup98, one of the components
of the nuclear pore. the C-terminal end is a predicted
coiled-coil domain. Nup88 is overexpressed in tumour
cells.
Length = 717
Score = 34.1 bits (78), Expect = 0.11
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Query: 501 KKSHPTPQKK----NPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKI 556
K S P P++ + Q +E+ + K L E + + +QL+
Sbjct: 528 KDSSPPPEECLQLLSRATQVFREQYLLK-------------HDLAREEFQRRVKLLQLQ- 573
Query: 557 TEKEQQINDQNLISNEGKEIHQLYHDLDQMYQDVKEKEE 595
KE+Q+ D E K + + L + +++ K +E
Sbjct: 574 --KEKQLEDIQDCREERKSLSERAEKLAEKFEEAKYNQE 610
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 33.9 bits (77), Expect = 0.14
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 309 YGECIGIVGPNGAGKTTLLKLLTGKIKPDCG-FITL 343
Y E IGI+ G+GKTTL +LL G PD G FI L
Sbjct: 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGL 47
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. Mutations have
also been found that do not phosphorylate the
periplasmic binding proteins, yet still allow transport.
The ATPase activity of this protein seems to be
necessary, however.
Length = 300
Score = 33.2 bits (76), Expect = 0.18
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 19/81 (23%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGS 372
+GI G GAGK+TLL+ L G LK+A I +DP +S TG
Sbjct: 37 VGITGTPGAGKSTLLEALG------MELRRRG--LKVAVI-----AVDP----SSPFTGG 79
Query: 373 S--GDSLMVRGESRHVAGYIK 391
S GD ++ + +I+
Sbjct: 80 SILGDRTRMQRLATDPGAFIR 100
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 33.4 bits (76), Expect = 0.20
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
E ++IT ++ + D L I G+ IGI +G GK+TLL ++ K D I+L
Sbjct: 131 FEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISL 189
>gnl|CDD|184357 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 33.0 bits (76), Expect = 0.23
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 303 FSLRIHYGECIG---IVGPNGAGKTTLLKLL 330
F L +H G+ +G +VGP GAGK+ LL L+
Sbjct: 432 FRLSLHVGD-VGHTLVVGPTGAGKSVLLALM 461
>gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 33.0 bits (76), Expect = 0.25
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 31 KERICLVGCNGSGKSTLLKIAA 52
+ RI L+G G+GKSTL ++ A
Sbjct: 133 RRRIALIGLRGAGKSTLGRMLA 154
>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 32.6 bits (75), Expect = 0.28
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 313 IGIVGPNGAGKTTLL-KLL--TGKI 334
IGI+ AGKTTL ++L TGKI
Sbjct: 11 IGILAHIDAGKTTLTERILFYTGKI 35
>gnl|CDD|172967 PRK14495, PRK14495, putative molybdopterin-guanine dinucleotide
biosynthesis protein MobB/unknown domain fusion protein;
Provisional.
Length = 452
Score = 32.3 bits (73), Expect = 0.36
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 314 GIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDK 363
GI+G AGKT L++ L I GF ++T+ D+DPD
Sbjct: 5 GIIGWKDAGKTGLVERLVAAIAAR-GF-------SVSTVKHSHHDVDPDP 46
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 32.2 bits (74), Expect = 0.45
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCG 339
+GI GP GAGK+TL + L ++ D
Sbjct: 36 VGIAGPPGAGKSTLAEFLEALLQQDGE 62
>gnl|CDD|163531 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 31.9 bits (73), Expect = 0.53
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPD 337
I G G+GKTTLL L + PD
Sbjct: 183 ISGGTGSGKTTLLSALLALVAPD 205
>gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. There are two conserved sequence
motifs: GKT and YLP.
Length = 1192
Score = 31.6 bits (72), Expect = 0.63
Identities = 18/87 (20%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 206 ESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQKKS 265
+ + L+Q ++ L+ + ++ K+ L+ + R+++ ++++L + KQL EQ+++
Sbjct: 642 VTEARTALKQARLTLQRLQNEQQSLKDKLQQALAERKQQAETQLRQLDQQLKQLLEQQQA 701
Query: 266 FHSTIQT---HLQTTQSSGKLVLEADK 289
F ++ L+T + + V+E+D
Sbjct: 702 FLEELKDDFRELRTERKAKWQVVESDL 728
Score = 29.6 bits (67), Expect = 2.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 315 IVGPNGAGKTTLLKLL 330
I G N AGKTTL +L+
Sbjct: 22 ICGTNAAGKTTLQRLI 37
>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 31.4 bits (72), Expect = 0.67
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 316 VGPNGAGKTTLL-KL---LTGKIKPD-CGFITLGTNLKIATIDQ 354
VGP G GKTT L KL ITL T +I ++Q
Sbjct: 227 VGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQ 269
>gnl|CDD|161745 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes.
Length = 155
Score = 31.6 bits (72), Expect = 0.68
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDK 363
+ IVGP +GKTTL++ L +K ++ATI D D DK
Sbjct: 2 LQIVGPKNSGKTTLIERL---VKALKAR-----GYRVATIKHDHHDFDIDK 44
>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model
represents UreG, a GTP hydrolase that acts in the
assembly of the nickel metallocenter of urease. It is
found only in urease-positive species, although some
urease-positive species (e.g. Bacillus subtilis) lack
this protein. A similar protein, hypB, is an accessory
protein for expression of hydrogenase, which also uses
nickel.
Length = 199
Score = 31.4 bits (71), Expect = 0.73
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPD 337
IG+ GP G+GKT L++ LT ++
Sbjct: 4 IGVAGPVGSGKTALIEALTRALRQK 28
>gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 31.2 bits (72), Expect = 0.78
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 287 ADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTT 325
+++ + + V K ++ I +VG NG GKTT
Sbjct: 93 KEELAEILEP--VEKPLNIEEKKPFVILVVGVNGVGKTT 129
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP.
Length = 180
Score = 30.9 bits (71), Expect = 1.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 315 IVGPNGAGKTTLLKLL 330
I GP+G GK+TL+K L
Sbjct: 6 ISGPSGVGKSTLVKAL 21
>gnl|CDD|163021 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 30.8 bits (70), Expect = 1.1
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 294 YDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
D + + L I + I I G G+GKTT LK L +I D IT+
Sbjct: 128 LDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI 177
>gnl|CDD|181981 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed.
Length = 364
Score = 30.4 bits (70), Expect = 1.4
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 313 IGIVG-PNGAGKTTLLKLLTG 332
GIVG PN GK+TL LT
Sbjct: 5 CGIVGLPN-VGKSTLFNALTK 24
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 30.4 bits (69), Expect = 1.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED 358
+G+ G +G GKTT L+ L + + +T+ I T D D
Sbjct: 11 LGVAGDSGCGKTTFLRGLADLLGEE--LVTV-----ICTDDYHSYD 49
>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 30.1 bits (69), Expect = 1.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 315 IVGPNGAGKTTLL 327
+VG NG GKT LL
Sbjct: 28 LVGENGQGKTNLL 40
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 315 IVGPNGAGKTTLLK 328
++GP G+GKTTLL+
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|172962 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 30.1 bits (68), Expect = 1.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATI--DQKREDID 360
+G+VG +G GKTTLL+ L ++ G+ +I I R DID
Sbjct: 208 LGVVGYSGTGKTTLLEKLIPELI-ARGY-------RIGLIKHSHHRVDID 249
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 30.1 bits (69), Expect = 1.8
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 315 IVGPNGAGKTTLLKLL 330
+ GP+GAGK+TL+K L
Sbjct: 10 LSGPSGAGKSTLVKAL 25
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 29.9 bits (68), Expect = 1.8
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 3 LPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTL 47
+P+L + + G+D+L + + L+G +G GKSTL
Sbjct: 172 VPVLAVS--ALDGEGLDVLAAWL---SGGKTVALLGSSGVGKSTL 211
>gnl|CDD|151058 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialized organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 30.1 bits (68), Expect = 1.8
Identities = 9/71 (12%), Positives = 33/71 (46%)
Query: 516 SLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLISNEGKE 575
+ + ++K + ++ L + +E+ +++ ++ E+ ++D + + +
Sbjct: 273 EARRTLSQVQEKYNQASQGVSELTRELNEISEELEQVKQEMEERGASMSDGSPLVKIKQA 332
Query: 576 IHQLYHDLDQM 586
I +L ++ QM
Sbjct: 333 ITKLKEEIKQM 343
>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 30.1 bits (69), Expect = 1.9
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 316 VGPNGAGKTTLL-KLL--TGKIK 335
VG +GAGKTTL +L TG I
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIH 23
>gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 29.8 bits (68), Expect = 1.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 315 IVGPNGAGKTTLLKLL 330
I GPN GK+T L+ +
Sbjct: 4 ITGPNMGGKSTYLRQV 19
>gnl|CDD|173195 PRK14733, coaE, dephospho-CoA kinase; Provisional.
Length = 204
Score = 30.0 bits (67), Expect = 1.9
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGS 372
IGI G +GK+T ++L K+ NL + D +I S+ +
Sbjct: 9 IGITGGIASGKSTATRILKEKL-----------NLNVVCADTISREITKKPSVIKKIAEK 57
Query: 373 SGDSL---------MVRG---ESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARV 420
GD + M+R ES+ +++D+L HP + K + + + IV
Sbjct: 58 FGDEIVMNKQINRAMLRAIITESKEAKKWLEDYL-HPVINKEIKKQVKESDTVMTIVDIP 116
Query: 421 LAQPFNF 427
L P+NF
Sbjct: 117 LLGPYNF 123
>gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.7 bits (68), Expect = 2.2
Identities = 18/93 (19%), Positives = 40/93 (43%)
Query: 206 ESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQKKS 265
E+ KK L + + H L+ + E E R + KR +++ + L + L+++++
Sbjct: 52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEE 111
Query: 266 FHSTIQTHLQTTQSSGKLVLEADKITKQYDDRL 298
+ Q Q K E +++ ++ L
Sbjct: 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
>gnl|CDD|148992 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases are
sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and tend
to undergo disruption to form pseudogenes. A unique
feature of all eukaryotic and certain bacterial KAP
NTPases is the presence of two or four transmembrane
helices inserted into the P-loop NTPase domain. These
transmembrane helices anchor KAP NTPases in the membrane
such that the P-loop domain is located on the
intracellular side.
Length = 301
Score = 29.7 bits (67), Expect = 2.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 312 CIGIVGPNGAGKTTLLKLLTGKIK 335
IG+ G G+GKT+ L LL ++K
Sbjct: 22 VIGLYGAWGSGKTSFLNLLEDELK 45
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 29.6 bits (67), Expect = 2.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 315 IVGPNGAGKTTLLKLL 330
I GP G+GKTTLL L
Sbjct: 439 IFGPTGSGKTTLLNFL 454
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 29.2 bits (66), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 33 RICLVGCNGSGKSTLLK 49
+I L+G GSGKSTL +
Sbjct: 3 KIILIGSGGSGKSTLAR 19
>gnl|CDD|118258 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.1 bits (65), Expect = 3.3
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 495 DMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQL 554
DML Q K + K QS+Q +++K K + +R++ ++L E+ ++ +
Sbjct: 458 DML--QTKLNSMVSAKQKDKQSMQ--SMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETA 513
Query: 555 KITEKEQQINDQNLISNEGKEIHQLYHDLDQMYQDVKEKEEQWLTLE-------IMQEEE 607
+ + + + + L ++ ++ D+K KEE+ LE QE E
Sbjct: 514 ARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESE 573
Query: 608 KN 609
K
Sbjct: 574 KE 575
>gnl|CDD|184707 PRK14491, PRK14491, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoeA;
Provisional.
Length = 597
Score = 29.2 bits (66), Expect = 3.3
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDK 363
+G +G GKTTLL+ L ++ L++A I + D D+
Sbjct: 13 LGFCAYSGTGKTTLLEQLIPELN--------QRGLRLAVIKHAHHNFDVDQ 55
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 29.2 bits (65), Expect = 3.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 310 GECIGIVGPNGAGKTT 325
G I +VGP GAGKTT
Sbjct: 350 GGVIALVGPTGAGKTT 365
>gnl|CDD|184709 PRK14494, PRK14494, putative molybdopterin-guanine dinucleotide
biosynthesis protein MobB/FeS domain-containing protein
protein; Provisional.
Length = 229
Score = 29.2 bits (66), Expect = 3.6
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID-PDK 363
IG++G +GKTTL++ + +K ++AT + D PD
Sbjct: 4 IGVIGFKDSGKTTLIEKILKNLK--------ERGYRVATAKHTHHEFDKPDT 47
>gnl|CDD|183360 PRK11889, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 436
Score = 28.9 bits (64), Expect = 3.6
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 311 ECIGIVGPNGAGKTTLLKLLTGKI---KPDCGFITLGTNLKIATIDQKREDIDPDKSLAS 367
+ I ++GP G GKTT L + + K GFIT + +I T+ Q ++ + K++
Sbjct: 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS-RIGTVQQLQDYV---KTIGF 297
Query: 368 YLTGSSGDSLMVR 380
+ ++ M R
Sbjct: 298 EVIAVRDEAAMTR 310
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University).
Length = 1311
Score = 28.9 bits (64), Expect = 3.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 129 VALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--------NSALIFVSHDRRFL 180
+AL + I+ LDEPT +LD I + L++I N L+ ++HD F+
Sbjct: 1214 LALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273
Query: 181 ETLS 184
E L
Sbjct: 1274 ELLG 1277
Score = 28.1 bits (62), Expect = 7.4
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 408 SGGEKMRA--IVARVLAQPF----NFLIMDEPTNDLDFETLDFLERTITQLQGT------ 455
S G+K+ A I+ LA+ F + +DEPT +LD E ++ L + ++ +
Sbjct: 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1260
Query: 456 --ILIVSHDRDFLDRTVTS 472
+L+++HD DF++ S
Sbjct: 1261 FQLLVITHDEDFVELLGRS 1279
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent.
Length = 1164
Score = 28.9 bits (65), Expect = 3.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 542 LERLPQEIHKIQLKITEKEQQIND-QNLISNEGKEIHQLYHDLDQMYQDVKEKEEQWLTL 600
L RL E ++ +I E ++Q D + I + KEI L +++ ++++E E L
Sbjct: 821 LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
Query: 601 E 601
E
Sbjct: 881 E 881
>gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1 and Miro-2), are atypical Rho GTPases. They have
a unique domain organisation, with tandem GTP-binding
domains and two EF hand domains (pfam00036), that may
bind calcium. They are also larger than classical small
GTPases. It has been proposed that they are involved in
mitochondrial homeostasis and apoptosis.
Length = 118
Score = 28.9 bits (65), Expect = 3.9
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDC---GFITLGTNLKIATIDQKREDI 359
+ ++G G+GK++LL L G P + +D E +
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELL 51
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in E.
coli shows considerable homology to guanylate kinases
(EC 2.7.4.8), and has actually been shown to act as a
ribose 1,5-bisphosphokinase (PRPP forming). This
suggests an analogous kinase reaction for phosphonate
metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 28.9 bits (65), Expect = 3.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 310 GECIGIVGPNGAGKTTLL 327
G I +VGP+GAGK TLL
Sbjct: 1 GRLIYVVGPSGAGKDTLL 18
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model
recognizes a large number of small GTP-binding proteins
and related domains in larger proteins. Note that the
alpha chains of heterotrimeric G proteins are larger
proteins in which the NKXD motif is separated from the
GxxxxGK[ST] motif (P-loop) by a long insert and are not
easily detected by this model.
Length = 161
Score = 28.9 bits (65), Expect = 4.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 313 IGIVGPNGAGKTTLLKLLTGK 333
I IVG GK+TLL L G
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGN 24
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 29.0 bits (65), Expect = 4.0
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 32/110 (29%)
Query: 487 IKYAGGYSDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLERLP 546
IK GY + L+Q KK+ K A+ +++ +++EKK+ +LL+++L
Sbjct: 707 IKVNNGYGNFLIQNKKA--LLADKENLAKIKKKKILEQEKKRN--------HELLMKKLK 756
Query: 547 QEIH--------------KIQLKITEKEQQINDQNLISNEGKEIHQLYHD 582
EI KI KIT K+ I E +IH + D
Sbjct: 757 SEIDNKKITLDIQLGPKGKIYGKITLKQ--------IVEEFHKIHNITID 798
>gnl|CDD|181948 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 28.9 bits (65), Expect = 4.2
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Query: 313 IGIVG-PNGAGKTTLLKLLTG 332
IG++G PN +GKTTL LTG
Sbjct: 6 IGLIGNPN-SGKTTLFNQLTG 25
>gnl|CDD|172375 PRK13851, PRK13851, type IV secretion system protein VirB11;
Provisional.
Length = 344
Score = 28.7 bits (64), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 317 GPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKI 349
GP G+GKTT+ K L I P IT+ L++
Sbjct: 169 GPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201
>gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal.
Length = 329
Score = 28.5 bits (65), Expect = 4.6
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 313 IGIVG-PNGAGKTTLLKLLTGKIKP---DCGFITLGTNLKIATIDQKRE----DI 359
+G+VG PN AGK+TL+ ++ KP D F TL NL + +D R DI
Sbjct: 160 VGLVGLPN-AGKSTLISAVS-AAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADI 212
>gnl|CDD|184708 PRK14493, PRK14493, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoaE;
Provisional.
Length = 274
Score = 28.4 bits (64), Expect = 4.9
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSL---ASYL 369
+ IVG GKTTL++ L ++ G +GT + T + D + A +
Sbjct: 4 LSIVGYKATGKTTLVERLVDRLS---GRGRVGTVKHMDTERLNPDGTDTGRHFDAGADVV 60
Query: 370 TGSSGDSLMVRGESRHVAGYIKD 392
G + + G R + + D
Sbjct: 61 YGLTDGEWVASGRDRSLDDALDD 83
>gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 28.4 bits (64), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTG 332
G+ IGI +G GK+TLL +L
Sbjct: 165 GQRIGIFAGSGVGKSTLLAMLAR 187
>gnl|CDD|161971 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair.
Length = 563
Score = 28.5 bits (64), Expect = 5.4
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 515 QSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLISNEGK 574
Q L++ K+++ +R + L + +L +E+ + L+ E E +Q +SN K
Sbjct: 175 QQLKDRQQKEQELAQRLDFLQF-------QL-EELEEADLQPGEDEALEAEQQRLSNLEK 226
Query: 575 EIHQLYHDLDQMYQDVKEKE 594
+ L + DV +E
Sbjct: 227 LRELSQNALAALRGDVDVQE 246
>gnl|CDD|185424 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 28.5 bits (64), Expect = 5.4
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 503 SHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEI 549
S +KK ++ KK ++RK R+ + ERL ++I
Sbjct: 253 SKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKI 299
>gnl|CDD|179638 PRK03731, aroL, shikimate kinase II; Reviewed.
Length = 171
Score = 28.4 bits (64), Expect = 5.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 313 IGIVGPNGAGKTTLLKLL 330
+ +VG G GKTT+ L
Sbjct: 5 LFLVGARGCGKTTVGMAL 22
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 28.4 bits (64), Expect = 5.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIK 335
+ I G +GKTT L +IK
Sbjct: 25 VAIDGITASGKTTFADELAEEIK 47
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 28.2 bits (63), Expect = 6.4
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 315 IVGPNGAGKTTLL 327
I GP GAGKTTLL
Sbjct: 35 ITGPTGAGKTTLL 47
>gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 28.3 bits (64), Expect = 6.6
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 313 IGIVG-PNGAGKTTLLKLLTGKIKP---DCGFITLGTNLKIATIDQKRE----DI 359
+G++G PN AGK+T ++ ++ KP D F TL NL + +D +R DI
Sbjct: 162 VGLLGLPN-AGKSTFIRAVS-AAKPKVADYPFTTLVPNLGVVRVDDERSFVVADI 214
>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 27.9 bits (62), Expect = 6.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 303 FSLRIHYGECIG---IVGPNGAGKTTLLKLLTGKIK 335
F L +H + +G I GP G+GK+TLL L+ + +
Sbjct: 447 FRLNLHVDD-VGHTLIFGPTGSGKSTLLALIAAQFR 481
>gnl|CDD|180665 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 28.0 bits (62), Expect = 7.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 508 QKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLK-ITEKEQQINDQ 566
Q+KN P +SL+E +K KR R+ Y Q L+ I K + + + + Q+ +
Sbjct: 400 QQKNVPVKSLEEIIAFNKKDSKR--RIKYGQTLIEASEKSAITKDEFEKVVQTSQENAKK 457
Query: 567 NL 568
L
Sbjct: 458 EL 459
>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 28.1 bits (63), Expect = 7.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 315 IVGPNGAGKTTLLKLLT 331
I G NGAGK+T+L+ LT
Sbjct: 32 ITGKNGAGKSTMLEALT 48
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 27.8 bits (62), Expect = 7.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 315 IVGPNGAGKTTLLKLL 330
I+GP GAGKT L+ L
Sbjct: 451 IIGPTGAGKTVLMNFL 466
>gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional.
Length = 182
Score = 27.8 bits (62), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 311 ECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
+ I I +G GKTTL + LT K+K
Sbjct: 4 KIITIAAVSGGGKTTLTERLTHKLKNSKAL 33
>gnl|CDD|179089 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 27.8 bits (63), Expect = 8.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 313 IGIVGPNGAGKTTLLKLL 330
I I G +GAGK+T ++LL
Sbjct: 6 ITIEGIDGAGKSTQIELL 23
>gnl|CDD|150186 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein modules with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 87
Score = 27.7 bits (62), Expect = 8.7
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 513 PAQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITE-KEQQINDQNLISN 571
P Q+ +++ KKE K+ +K R ++ L ++ P +I+ +I + KE + + L +
Sbjct: 6 PTQAYRKQAKKKELKKNKKERQKRREERLAKKNP---SQIKRQIDKLKEMESSGAKLDPH 62
Query: 572 EGKEIHQLYHDLDQMYQDVKEKEE 595
E +++ +L DL + VK+K E
Sbjct: 63 EKQKLKELEKDL----KAVKKKRE 82
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 27.7 bits (61), Expect = 9.2
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 18 IDLLQDVCLSIKPKERICLV-GCNGSGKSTLL 48
+DL + +I P+E I + G GSGKSTLL
Sbjct: 120 LDLPAAIIDAIAPQEGIVFITGATGSGKSTLL 151
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain.
Length = 499
Score = 27.5 bits (61), Expect = 9.5
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 245 NVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFS 304
N+ L E+ K L+ +K T S + L+ I Q + +
Sbjct: 149 NIYGADHLKEVVKFLEGSEKLPPRTNTKPKSIINKSYIIDLDLKDIKGQQHAK---RALE 205
Query: 305 LRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
+ G + + GP G+GKT L L G + P
Sbjct: 206 IAAAGGHNLLLFGPPGSGKTMLASRLQGILPP 237
>gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit
gamma. eIF-2 functions in the early steps of protein
synthesis by forming a ternary complex with GTP and
initiator tRNA.
Length = 406
Score = 27.7 bits (62), Expect = 9.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 313 IGIVGPNGAGKTTLLKLLTGK 333
IG+VG GKTTL K LTG
Sbjct: 7 IGMVGHVDHGKTTLTKALTGV 27
>gnl|CDD|181809 PRK09376, rho, transcription termination factor Rho; Provisional.
Length = 416
Score = 27.8 bits (63), Expect = 9.6
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 315 IVGPNGAGKTTLLKLLTGKI---KPDCGFITL 343
IV P AGKT LL+ + I P+ I L
Sbjct: 174 IVAPPKAGKTVLLQNIANSITTNHPEVHLIVL 205
>gnl|CDD|149392 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 322
Score = 27.7 bits (62), Expect = 9.9
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 515 QSLQEE-----TVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLI 569
Q+L+EE + E L +++ L L +I + + ++ E +Q++ + +
Sbjct: 186 QALKEEIANLRQLADELNLCDPLELEKARQELRS-LSVKISEKRKQLEELQQELQELTIA 244
Query: 570 SNEGKEIHQLYHDLDQMYQDVKEKEEQWLTLEIMQEEEK 608
G E + + + E+ W EI + + K
Sbjct: 245 IEAGTEQKSELLEEIAEAEKILEECRGWSAKEISKLKAK 283
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,936,678
Number of extensions: 652185
Number of successful extensions: 3144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2978
Number of HSP's successfully gapped: 908
Length of query: 610
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 511
Effective length of database: 3,855,281
Effective search space: 1970048591
Effective search space used: 1970048591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)