BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781123|ref|YP_003065536.1| putative ABC transporter,
ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
(610 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 1260 bits (3260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/610 (100%), Positives = 610/610 (100%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG
Sbjct: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
Query: 61 NVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN 120
NVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN
Sbjct: 61 NVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN 120
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFL 180
LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFL
Sbjct: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFL 180
Query: 181 ETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTA 240
ETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTA
Sbjct: 181 ETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTA 240
Query: 241 RRKRNVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVV 300
RRKRNVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVV
Sbjct: 241 RRKRNVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVV 300
Query: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID 360
KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID
Sbjct: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID 360
Query: 361 PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARV 420
PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARV
Sbjct: 361 PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARV 420
Query: 421 LAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIE 480
LAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIE
Sbjct: 421 LAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIE 480
Query: 481 DPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKL 540
DPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKL
Sbjct: 481 DPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKL 540
Query: 541 LLERLPQEIHKIQLKITEKEQQINDQNLISNEGKEIHQLYHDLDQMYQDVKEKEEQWLTL 600
LLERLPQEIHKIQLKITEKEQQINDQNLISNEGKEIHQLYHDLDQMYQDVKEKEEQWLTL
Sbjct: 541 LLERLPQEIHKIQLKITEKEQQINDQNLISNEGKEIHQLYHDLDQMYQDVKEKEEQWLTL 600
Query: 601 EIMQEEEKNP 610
EIMQEEEKNP
Sbjct: 601 EIMQEEEKNP 610
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 247 bits (631), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 162/513 (31%), Positives = 263/513 (51%), Gaps = 53/513 (10%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
I + +S G +L D+ LS P +I ++G NG+GKST+L+I AGI + +G +L
Sbjct: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
Query: 65 HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN------------- 111
+ +GYL Q P L T+ + I IE ++L ++N
Sbjct: 66 ATGFTVGYLPQEPQLDLSKTVKENI-------IEGVAHKQAILDRYNELMMNYSEKTEEE 118
Query: 112 -LREQD----------------------------RIENLSVGQTRCVALMKMLISRPDIL 142
+ QD I +LS G+ R VAL K+L+S PD+L
Sbjct: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
Query: 143 ILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGF 202
+LDEPTNHLD TI WME+ L + + A++ V+HDR FL+ ++ + +DRG +
Sbjct: 179 LLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY 238
Query: 203 AYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQ 262
+ + K + QE + +K E E++W+ AR+ ++ R++ E+ ++
Sbjct: 239 SAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEEL---VESA 295
Query: 263 KKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAG 322
Q + + G +V+EA I+K Y+DRL++ + S ++ G +G++GPNGAG
Sbjct: 296 AHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAG 355
Query: 323 KTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGE 382
KTTL ++LTG PD G I +G + ++ +DQ R+ ++ +K++ ++G D + + G
Sbjct: 356 KTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGD-DIVKLNGH 414
Query: 383 SRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442
+ Y F F + LSGG++ R +A++L N +++DEPTNDLD ETL
Sbjct: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
Query: 443 DFLERTITQLQGTILIVSHDRDFLDRTVTSTIA 475
LE + G +I+SHDR FLDR T +A
Sbjct: 475 SALEDALENFAGCAVIISHDRMFLDRLATHILA 507
Score = 90.5 bits (223), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 19/224 (8%)
Query: 7 RLDHISATIGGID-------LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
RL H+ GI L+ ++ + P + ++G NG+GK+TL ++ G P S
Sbjct: 312 RLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371
Query: 60 GNVFLHSSSRLGYLEQNPD-LSHFSTISQYI---DDTIK-DTIEAPYSPYSLLKKFNLR- 113
G + + + L Y++Q+ D L T+ + I DD +K + E Y FN +
Sbjct: 372 GTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYC--SAFNFKG 429
Query: 114 --EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALI 171
+Q RI +LS GQ V L K+L S ++++LDEPTN LD T+ +E L +
Sbjct: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAV 489
Query: 172 FVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQ 215
+SHDR FL+ L+T + + H++ FE ++K+ L +
Sbjct: 490 IISHDRMFLDRLATHILAFEGNG--HVEWFEGNFEEYEKDKLSR 531
Score = 46.2 bits (108), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
K + ++K + + V+ D +L + IGI+GPNGAGK+T+L+++ G K G
Sbjct: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63
Query: 342 TLGTNLKIATIDQK 355
L T + + Q+
Sbjct: 64 WLATGFTVGYLPQE 77
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 80.9 bits (198), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 20/204 (9%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P++ L + S G +LQD+ +IKP E + L+G NGSGKST+ K+ GI +P G+V
Sbjct: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
Query: 64 LHSSSRLGYLEQNP--------DLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ 115
H +GY+ Q L F T+S + +D + +L+ K+N
Sbjct: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM---PSSRDDVLQILDRVNLIGKYN---- 121
Query: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NSALI 171
I++LS G+ + L K L+ +P++L+LDEP +DF + + + + ++
Sbjct: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
Query: 172 FVSHDRRFLETLSTTTVWL-DRGC 194
+SH+ + + T + L +R C
Sbjct: 182 LISHNLHMVMASTDTVICLNNRIC 205
Score = 75.1 bits (183), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 22/190 (11%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR-- 356
+++D + I E + ++GPNG+GK+T+ KL+TG IKP G + L + + QK
Sbjct: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
Query: 357 EDIDPDKSLASYLT----GSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEK 412
E+ P SL ++T S D L + + Y ++ +K LSGGE
Sbjct: 85 ENTLP-LSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN-----------IKDLSGGEF 132
Query: 413 MRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGT----ILIVSHDRDFLDR 468
RA++A+ L + N L++DEP +DF L IT ++ + IL++SH+ +
Sbjct: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
Query: 469 TVTSTIAAQN 478
+ + I N
Sbjct: 193 STDTVICLNN 202
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Query: 274 LQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333
Q ++S +L A +TK+Y+ VVK L + GE +G++GPNGAGKTT ++TG
Sbjct: 15 FQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
Query: 334 IKPDCGFITLGTN--LKIATIDQKREDIDPDKSLASYLTGSSGDSLMVR--------GES 383
I D G I + N K+ + R I AS G + + ++ +
Sbjct: 75 ICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK 134
Query: 384 RH--VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD--- 438
RH + +K+F H L LSGG++ R +AR L +++++DEP +D
Sbjct: 135 RHEKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
Query: 439 FETLDFLERTITQLQGTILIVSHD 462
+ L R + ILI H+
Sbjct: 194 ISDIHVLIRDLASRGIGILITDHN 217
Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV----------FLHSSSR 69
+++ V L +KP E + L+G NG+GK+T + G+ SG++ ++ +R
Sbjct: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
Query: 70 LG--YLEQNPDLSHFSTISQYIDDTI----KDTIEAPYSPYSLLKKFNLREQDRIEN--L 121
LG YL Q + T+ + I + KD + SLLK+FN+ + + L
Sbjct: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159
Query: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWMEQELLKINSALIFVSHDRR 178
S GQ R + + + L+S P ++LDEP +D IH + ++L ++ H+
Sbjct: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
Query: 179 FLETLSTTTVWLDRGCLHH 197
+ TL +DR + H
Sbjct: 220 EILTL------IDRAYIIH 232
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 58.5 bits (140), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+++ D + YD+ + F +++ E I I+GP+GAGK+TLL L+ G P G I L
Sbjct: 1 MIKLDHLIYCYDN--LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58
Query: 344 GTNLKIATIDQKR--EDIDPDKSLASYLTGSSGDSLMVRGESR---HVAGYIKDFL---F 395
+ KR + + +L S+LT +L + R + +K L F
Sbjct: 59 NGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF 118
Query: 396 HPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQ 451
D + +SGG++ R +AR L + L++DEP D E L L++ +
Sbjct: 119 LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDE 178
Query: 452 LQGTILIVSHD 462
Q T+L++SH+
Sbjct: 179 RQLTLLMISHN 189
Score = 54.7 bits (130), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+++LDH+ + + D + ERI ++G +G+GKSTLL + AG P G++FL
Sbjct: 1 MIKLDHLIYCYDNLKMQFD--FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58
Query: 65 H---------SSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ 115
+ S L L Q +L T+ Q I I + + ++ +K+ + E+
Sbjct: 59 NGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQ--MLEK 116
Query: 116 DRIEN--------LSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+E+ +S GQ + VAL + LI + IL+LDEP D
Sbjct: 117 VFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFD 161
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 58.2 bits (139), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS------------- 66
+L++V LS+K E + LV +G+GKST+L IA + P GNV + +
Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
Query: 67 --SSRLGYLEQNPD-LSHFSTISQYIDDTIKDTIE---APYSPYSLLKKFNLRE--QDRI 118
S++G++ Q L FS I I I I A LL ++ + R
Sbjct: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
++S G+ + VA+ + + ++P I++ DEPT +LD +T
Sbjct: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 21/194 (10%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED 358
V+++ L + GE + +V P+G GK+T+L + PD G + + L D K+
Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
Query: 359 IDPDKSLASY------LTGSSGDSLM---VRGESRHVAGYIK--DFLFHPDQ---AHSLM 404
+ K Y + S ++++ + H Y + D L + D A+
Sbjct: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQLQGTILIVS 460
+SGGE+ R + R +A ++ DEPT +LD +T L+ + + LI +
Sbjct: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204
Query: 461 HDRDF---LDRTVT 471
H+ D +DR +T
Sbjct: 205 HNHDLASQMDRQIT 218
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 55.1 bits (131), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKRE 357
V+ +L G+ +VGP+G+GK+T++ LL P G I + G N++ T RE
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
Query: 358 DID---PDKSLASYLTGSS---GDSLMVRGESRHVA--GYIKDFLFHPDQAHSLM----- 404
I D L S + G + E +A DF+ Q +
Sbjct: 428 RISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENG 487
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-QG-TILIVSH 461
+LSGG+K R +AR + + + L++DE T+ LD T + + + +++L QG T ++++H
Sbjct: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546
Score = 47.0 bits (110), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 25/170 (14%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV-----------FLHSSS 68
+L + L K + LVG +GSGKST++ + + +P SG++ F
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
Query: 69 RLGYLEQNPDLSHFSTISQY------IDDTIKDTIEAPYSP------YSLLKKFNLREQD 116
R+ Y+ Q D+ FS +Y T ++ IE S SL + ++ +
Sbjct: 428 RISYVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
Query: 117 RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166
NLS GQ + +A+ + ++ IL+LDE T+ LD T + + Q L ++
Sbjct: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 54.3 bits (129), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 37/226 (16%)
Query: 274 LQTTQSSGKLVLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
++T +S K LE I+ Y + ++D +L I ++G NGAGK+TL + + G
Sbjct: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
Query: 333 KIKPDCGFI-----TLGTNLK---IATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESR 384
I D G I T+ LK IA I Q E ID + + +++ G +
Sbjct: 61 LIPLDKGSISIFNQTVENALKADLIAYIPQT-ESIDWTFPILV-------EDVVMMGRYK 112
Query: 385 HV----AGYIKDFLFHPDQAHSL---------MKHLSGGEKMRAIVARVLAQPFNFLIMD 431
H+ D+ + ++ + LS G++ R +AR LAQ +IMD
Sbjct: 113 HMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMD 172
Query: 432 EPTNDLDFET---LDFLERTITQLQGTILIVSHDRD----FLDRTV 470
EP +DF+T + FL +++ IL+ +H+ + F DRT+
Sbjct: 173 EPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTI 218
Score = 53.5 bits (127), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 6 LRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
L L IS T G L+DV L I L+G NG+GKSTL + G+ G++ +
Sbjct: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
Query: 65 HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIE----------------APYSPYSLLK 108
+ + L+ DL + ++ ID T +E A + Y ++
Sbjct: 72 FNQTVENALK--ADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
Query: 109 K------FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT---IHWM 159
+ + Q +I LS+GQ + V L + L + ++I+DEP +DF+T + ++
Sbjct: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
Query: 160 EQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
+ LL + ++ +H+ + + T++L + L
Sbjct: 190 LKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVL 225
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQ 75
G + +L V ++ E + L+G +GSGKSTLL+I AG+ P SG V G +
Sbjct: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-----GKKIK 82
Query: 76 NP--DLS-HFSTISQYIDDTIKDTIEAPYSPYSL---------LKKFNLREQDRIEN--- 120
+P D+S F T + + T+ + +E + L +L D E+
Sbjct: 83 DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142
Query: 121 --LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166
+S G + V + + P +L++DEP + LD T + +L+ +
Sbjct: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
Score = 46.2 bits (108), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 34/188 (18%)
Query: 298 LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKR 356
LV+ + + GE +G++G +G+GK+TLL+++ G + P G + G +K
Sbjct: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-------- 82
Query: 357 EDIDPDK---------SLASYLTGSSGDSLMVRG------ESRHVAGYIKDFLFHPDQAH 401
DP K +L +LT L ++ E R A D +
Sbjct: 83 ---DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
Query: 402 SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QG----- 454
+ +SGG R AR + L+MDEP + LD T + L + L +G
Sbjct: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
Query: 455 TILIVSHD 462
++L+V+H+
Sbjct: 200 SMLMVTHN 207
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 51.2 bits (121), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 40/207 (19%)
Query: 287 ADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT--GKIKPDCGF---- 340
++K++ Y ++ + D +L+I ++GP+G GK+T L+ L + +C F
Sbjct: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
Query: 341 ITLGTNLKIATIDQKR---------EDIDP-DKSLASYLTGSSGDSLMVRGESR------ 384
I G N+ +++D R + +P KS+ Y + G + G ++
Sbjct: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSI--YDNVAYGPRIHGLGNNKADIDQI 126
Query: 385 --------HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
+ +KD LFH LSGG++ R +AR LA ++MDEP +
Sbjct: 127 VEMSLKKASLFNEVKDRLFHDASL------LSGGQQQRVCIARALAVNPEVILMDEPCSA 180
Query: 437 LDFETLDFLERTITQLQG--TILIVSH 461
LD +E I +L+ TI+IV+H
Sbjct: 181 LDPIATASVEELIHELRESLTIVIVTH 207
Score = 35.8 bits (81), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 31/198 (15%)
Query: 9 DHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----- 63
+ +S G L D+ L I L+G +G GKST L+ + E VF
Sbjct: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
Query: 64 -----LHSSS--------RLGYLEQNPD---------LSHFSTISQYIDDT--IKDTIEA 99
++ SS R+G + Q P+ +++ I ++ I +E
Sbjct: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
Query: 100 PYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWM 159
SL + R LS GQ + V + + L P+++++DEP + LD +
Sbjct: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
Query: 160 EQELLKINSAL--IFVSH 175
E+ + ++ +L + V+H
Sbjct: 190 EELIHELRESLTIVIVTH 207
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 20/208 (9%)
Query: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+E + K Y + ++D +L + GE + I GP+G+GK+TL++ + K G I
Sbjct: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75
Query: 343 LG---TNLKIATIDQKREDID---PDKSLASYLTGSSGDSL-------MVRGESRHVAGY 389
+ N I I + R D+ +L S L+ +L M + ++ +A +
Sbjct: 76 INGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMH 135
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
+ + D++H LSGGE RA +AR L ++ DEPT+ LD E + + +
Sbjct: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
Query: 450 TQL--QG-TILIVSHDRDF----LDRTV 470
+L +G T++ V+H+ F DR V
Sbjct: 196 IELAEEGMTMVCVTHEMGFARQVADRVV 223
Score = 47.8 bits (112), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL----------- 64
G L+D+ L++ ER+ + G +GSGKSTL++ I + Q+G + +
Sbjct: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87
Query: 65 -HSSSR-LGYLEQNPDLSHFSTISQYIDDTI----------KDTIEAPYSPYSLLKKFNL 112
H R +G + Q+ +L FS +S + T+ KD E + +K +
Sbjct: 88 IHEVRRDVGMVFQHFNL--FSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145
Query: 113 REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWMEQELLKINSA 169
+ R A+ + L +P I++ DEPT+ LD + + + EL +
Sbjct: 146 SHRSSSLLSGGESQRA-AIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204
Query: 170 LIFVSHDRRFLETLSTTTVWLDRG 193
++ V+H+ F ++ V++D+G
Sbjct: 205 MVCVTHEMGFARQVADRVVFMDQG 228
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 48.9 bits (115), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 307 IHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI-TLGTNLKIA------TIDQKREDI 359
I GE +G++G +G GK+ L++ + G I G + LG +L +A K +
Sbjct: 36 ILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVL 95
Query: 360 DPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFH---------PDQAHSLMKHLSGG 410
+L S +T S+ ++ E ++ + + + H P+ A+ + LSGG
Sbjct: 96 FQHGALFSSMTVQENISMPIK-EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGG 154
Query: 411 EKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----TILIVSHDRDFL 466
R +AR LA + L +DEPT+ LD + ++ + +L+ ++ +++HD + L
Sbjct: 155 MIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNL 214
Query: 467 DRTVTSTIAAQ-----------NIEDPNGYWIK 488
T Q +I D N WI+
Sbjct: 215 ISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 32 ERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS--------------SSRLGYLEQNP 77
E + ++G +G+GKS L++ G+ SG V + S++LG L Q+
Sbjct: 40 EILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHG 99
Query: 78 DLSHFSTISQYIDDTIKDTIEAP--------YSPYSLLKKFNLREQDRIENLSVGQTRCV 129
L T+ + I IK+ + P ++ +++ LS G + V
Sbjct: 100 ALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRV 159
Query: 130 ALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL----IFVSHD-RRFLETLS 184
+L + L PD+L LDEPT+ LD ++ L+K+ +L ++HD + T +
Sbjct: 160 SLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCN 219
Query: 185 TTTVWLDRGCL 195
V +G +
Sbjct: 220 RVAVIQKKGIM 230
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 41.6 bits (96), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 30/166 (18%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQK 355
R ++K+ + + GE I +VG +GAGKT++ L+ P G + + G +L++ ++++
Sbjct: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
Query: 356 REDIDPDKSLASYLTGSSGDSLMV------RGESRHVAGYIKDFLFHPDQAHSLMK---- 405
R I + S D++ + R E ++ A QAH +
Sbjct: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAA--------MLAQAHEFIGCLEN 414
Query: 406 -----------HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
HLS G+ R +AR + + L++DE + LD E
Sbjct: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
Score = 40.8 bits (94), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS-RLGYLEQNP 77
+L++V +++P E I LVG +G+GK+++ + +P SG+V + RL LE+
Sbjct: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIR 363
Query: 78 DL-----SHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ----------------- 115
H I+ + D I I P++ ++ + Q
Sbjct: 364 RFIAWVPQHPIMIAASVYDNI--AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILG 421
Query: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF----------------RTIHWM 159
D +LS GQ + +A+ + ++ IL+LDE + LD RT +
Sbjct: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFA 481
Query: 160 EQELLKINSA-LIFVSHDRRFLE 181
L I A ++FV HD+ +E
Sbjct: 482 SHRLSAIQDADMVFVLHDQVIVE 504
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 40.4 bits (93), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKRE 357
+ K S I + ++G +G GK+T+ KLL G IT+ G ++K T + R+
Sbjct: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
Query: 358 DID--PDKSLA-------SYLTGSSGDSLMVRGESRHVAGYIKDFLFH-PDQAHSLMKH- 406
I P ++ + L G+ S + VA +K F+ P+ +++
Sbjct: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQ-LKSFIMKLPNGYDTVVGER 490
Query: 407 ---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSH 461
LSGGEK R +AR + + +I DE T+ LD T ++ + L T L+++H
Sbjct: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAH 550
Score = 38.1 bits (87), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 52/245 (21%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG------------------- 60
+ + + I P ++ L+G +G GKST+ K+ + + + G
Sbjct: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
Query: 61 --------NVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLK---K 109
+ + + R L NP+ S D + +E ++K
Sbjct: 432 TIGIIPQDTILFNDTLRYNILYGNPNAS---------DQELCAAVEVAQLKSFIMKLPNG 482
Query: 110 FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA 169
++ +R LS G+ + V++ + ++ P I+I DE T+ LD T E+ I +A
Sbjct: 483 YDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT----ERH---IQTA 535
Query: 170 LIFVSHDRRFLET---LSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKK 226
L +S +R L LST T D + DQG +N++ Q I KK+
Sbjct: 536 LATLSKNRTTLVIAHRLSTIT---DADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
Query: 227 NEAEK 231
E+ K
Sbjct: 593 CESIK 597
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 40.0 bits (92), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 84/221 (38%), Gaps = 71/221 (32%)
Query: 288 DKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNL 347
DK++ +Y V +L + GE + ++G +GAGK+TLL+ + G
Sbjct: 34 DKVS-EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSING--------------- 77
Query: 348 KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYI----------------- 390
+A + + +D DK ++ + D+ ++R H +
Sbjct: 78 -LAPVVRGEVLVDTDKG---FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVE 133
Query: 391 --KDFLFHPDQ------------------AHSLMKHLSGGEKMRAIVARVLAQPFNFLIM 430
+FL PD A + LSGG K R AR A L+M
Sbjct: 134 LGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLM 193
Query: 431 DEPTNDLDFETLDFLERTITQ---------LQGTILIVSHD 462
DEP F +LD L R Q L+ TI+ VSHD
Sbjct: 194 DEP-----FSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229
Score = 40.0 bits (92), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 45/188 (23%)
Query: 26 LSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTI 85
L +K E + L+G +G+GKSTLL+ G+ G V + + G++ NP ++
Sbjct: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK--GFV--NP----YAAD 101
Query: 86 SQYIDDTIKDTIEAPYSPYSLL----------------------KKFNLREQDRIENL-- 121
+ + T+ + ++LL +K + E I NL
Sbjct: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
Query: 122 ---------SVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL----KINS 168
S G + V + + IL++DEP + LD ++ ELL K+
Sbjct: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
Query: 169 ALIFVSHD 176
++FVSHD
Sbjct: 222 TIVFVSHD 229
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 39.7 bits (91), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 46/209 (22%)
Query: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAG--ITEPQSGNVFLHSSSRLGYLEQN 76
++++ + L ++P E + ++G NGSGKSTL + +G E +G++ S L
Sbjct: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESIL------ 70
Query: 77 PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN---------------- 120
D S S+ I + +E P K L EQ + N
Sbjct: 71 -DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
Query: 121 ------------------LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162
S G+ + +++M + P + ILDE + LD + Q
Sbjct: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
Query: 163 LLKINS---ALIFVSHDRRFLETLSTTTV 188
+ + S + + ++H +R L + T+
Sbjct: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTI 218
Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
D +++ +L++ E + I+GPNG+GK+TL LL+G
Sbjct: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 37.7 bits (86), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 21/209 (10%)
Query: 270 IQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKL 329
I L + K ++ DK T RL+ ++ S I G C I GP+G GK+ L
Sbjct: 322 ISMRLSNNTITAKNIVFRDKKT----SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLC 377
Query: 330 LTGKIKPDCGFITLG-----------TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLM 378
+ G + + G I+ G + +I + Q + P + + +SL
Sbjct: 378 MLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQ-HCSLFPISITENIILSHDQNSLH 436
Query: 379 VRGESRHVAGYIKDFLFHPD--QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
+ ++ + G +D L + Q + + ++R++A L+MDEP
Sbjct: 437 IAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYH 496
Query: 437 LDFETLDFLERTITQL---QGTILIVSHD 462
LD E + + Q + TI+I+SHD
Sbjct: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHD 525
Score = 27.3 bits (59), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 129 VALMKMLISRPDILILDEPTNHLD 152
+ L +++ + P IL++DEP HLD
Sbjct: 475 IRLSRIIANNPAILLMDEPLYHLD 498
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 33.9 bits (76), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF---ITLGTNLKIATIDQKRED 358
DFS R H I +VG NG GKTT++ L+ K+ D G + G + A IDQ +
Sbjct: 106 DFSHRPH---VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLK-- 159
Query: 359 IDPDKSLASYLTGSSG 374
I D++ A ++ G
Sbjct: 160 IWADRTSADFVCSEIG 175
>gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 212
Score = 28.9 bits (63), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 385 HVAGYIKDFL---FHPDQAHSLMKHLS----GGEKMRAIVARVLAQPFNFLI 429
H+AG KD + + +Q H + S GGE +R VARVLA F++
Sbjct: 93 HIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFIL 144
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 27.7 bits (60), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
KDF C+ +VG AGK+TL+ G
Sbjct: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVG 44
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 27.7 bits (60), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIK---PDCGFITLGTNLKIATIDQKR 356
V D I G+ IV P GKT LL+ + IK P+C I L ID++
Sbjct: 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-------LIDERP 216
Query: 357 EDI-DPDKSLASYLTGSSGDSLMVRGESRHV 386
E++ D +S+ + S+ D +RHV
Sbjct: 217 EEVTDMQRSVQGEVISSTFDE----SAARHV 243
>gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 165
Score = 27.7 bits (60), Expect = 0.58, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 2 SLPILRLDHISATIGGID-LLQDVCLSIKPKERICLVGCNGSGKSTLLKIA 51
SLP+L + IS T+GGID LL V + +G +G+ ++LL +A
Sbjct: 82 SLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVA 132
>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 438
Score = 27.3 bits (59), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 289 KITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC 338
++ K + + V D + +G+ IG+ +G GK+TLL + + DC
Sbjct: 140 RVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA---RSDC 186
>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
Length = 335
Score = 26.9 bits (58), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKP---DCGFITLGTNLKI 349
IGI+G AGK+T L +T + KP D F TL NL I
Sbjct: 162 IGIIGLPNAGKSTFLASVT-RAKPKIADYPFTTLYPNLGI 200
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR----EDID 360
+ +VGP+G+GK+ L + + K + F + +L ID ++ EDID
Sbjct: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKSLDSILIDTRKPVLLEDID 117
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 25.8 bits (55), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
I G G+GKTTLL LT I D +T
Sbjct: 255 ISGGTGSGKTTLLNCLTRYIDKDERIVT 282
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 959
Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTL 47
LQ++ + + + I + G +GSGKS+L
Sbjct: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 24.6 bits (52), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 306 RIHYGECIGIVGPNGAGKTTLLKLLTGK 333
RI +G + +VGP G GKT L + + G+
Sbjct: 179 RIPHG--VLLVGPPGTGKTLLARAVAGE 204
>gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 23.9 bits (50), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 440 ETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNI 479
E DFLE L G + VS +DF D+ + +N+
Sbjct: 78 EKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENM 117
>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
psy62]
Length = 616
Score = 23.5 bits (49), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 106 LLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILD 145
+LKK N+ + I +++ G R + K + + + L+L+
Sbjct: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521
>gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62]
Length = 189
Score = 23.5 bits (49), Expect = 10.0, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 555 KITEKEQQINDQNLISNEGKEIHQLYHD 582
++T E+ I DQ + EG E+ L H+
Sbjct: 92 QVTVSEEVIGDQKVYFQEGMEVKLLIHE 119
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,077
Number of Sequences: 1233
Number of extensions: 16851
Number of successful extensions: 178
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 82
length of query: 610
length of database: 328,796
effective HSP length: 79
effective length of query: 531
effective length of database: 231,389
effective search space: 122867559
effective search space used: 122867559
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)