Query gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 101
No_of_seqs 2 out of 4
Neff 1.2
Searched_HMMs 33803
Date Wed Jun 1 21:50:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781124.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1p22_A F-BOX/WD-repeat protei 55.9 8.7 0.00026 19.9 2.5 31 7-37 30-60 (67)
2 >2pt7_G HP1451, hypothetical p 38.6 33 0.00096 16.6 3.2 42 31-73 2-45 (72)
3 >2ea9_A JW2626, hypothetical p 33.8 32 0.00096 16.6 2.6 21 21-41 46-66 (105)
4 >2inw_A Putative structural pr 31.2 38 0.0011 16.2 2.6 19 23-41 62-80 (133)
5 >1uqr_A 3-dehydroquinate dehyd 22.5 64 0.0019 14.9 2.5 30 51-82 124-153 (154)
6 >3czt_X Protein S100-B; EF-han 21.6 42 0.0013 15.9 1.4 52 7-58 17-70 (92)
7 >2drn_C 24-residues peptide fr 18.1 80 0.0024 14.4 2.5 21 34-54 3-23 (26)
8 >2vla_A Bpuji, restriction end 17.1 82 0.0024 14.3 2.1 27 65-91 38-67 (153)
9 >3cpt_A Mitogen-activated prot 15.6 82 0.0024 14.3 1.7 26 26-51 117-142 (143)
10 >2uyg_A 3-dehydroquinate dehyd 14.7 76 0.0022 14.5 1.4 25 51-77 123-147 (149)
No 1
>>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} (A:53-119)
Probab=55.85 E-value=8.7 Score=19.86 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.0
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2115578754632899998899999999987
Q gi|254781124|r 7 MYAPKEGNQYRPLRKEVRNAFPKILKSIEKA 37 (101)
Q Consensus 7 myapkegnqYRP~r~EVR~AFP~ilKsiEK~ 37 (101)
.+-|+.|++-+|...--|+-||+|+..||.-
T Consensus 30 LFk~~p~~~~~~~hsFyr~LyPKIiqDIe~I 60 (67)
T 1p22_A 30 LFKNKPPDGNAPPNSFYRALYPKIIQDIETI 60 (67)
T ss_dssp CC---------CCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 0036787887897643111157998889999
No 2
>>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} (G:81-152)
Probab=38.64 E-value=33 Score=16.59 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHH
Q ss_conf 9999987788999876288623354321--148999999999984
Q gi|254781124|r 31 LKSIEKALEPYVDPLIEPVEIGKEGMVD--EGYRLHICALIKLLE 73 (101)
Q Consensus 31 lKsiEK~L~~~VdPL~~PV~~~~~G~vd--E~Y~~HiC~LI~LL~ 73 (101)
||.-|..+..|+.|+++-|+..|+|-.. .|-..|| ||-+|-+
T Consensus 2 LknQee~i~~YL~~vie~v~~~Gr~qTKplDGvl~~I-AL~~LRe 45 (72)
T 2pt7_G 2 LQNQEKVMDTQLQSVIMTVHEVGKGQMKAPDGVLTYI-ALKKLRK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCEEEECCSTTHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHHH
T ss_conf 9999999999999999999997889999202449999-9998576
No 3
>>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} (A:)
Probab=33.78 E-value=32 Score=16.59 Aligned_cols=21 Identities=24% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999988999999999877889
Q gi|254781124|r 21 KEVRNAFPKILKSIEKALEPY 41 (101)
Q Consensus 21 ~EVR~AFP~ilKsiEK~L~~~ 41 (101)
...-.|||.++|-+|..|.+=
T Consensus 46 ~~Ld~aFP~~ikqlE~ml~sG 66 (105)
T 2ea9_A 46 PKLDVVFPHFISQIESMLTTG 66 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 899999999999999986458
No 4
>>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protein structure initiative; 1.50A {Shigella flexneri} (A:)
Probab=31.17 E-value=38 Score=16.20 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9988999999999877889
Q gi|254781124|r 23 VRNAFPKILKSIEKALEPY 41 (101)
Q Consensus 23 VR~AFP~ilKsiEK~L~~~ 41 (101)
.-.|||.++|-+|..|.+=
T Consensus 62 LdqaFP~~ikqlE~ml~sG 80 (133)
T 2inw_A 62 LDQAFPLLXKQLELXLTGG 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999986337
No 5
>>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} (A:)
Probab=22.46 E-value=64 Score=14.92 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=23.3
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 23354321148999999999984111110034
Q gi|254781124|r 51 IGKEGMVDEGYRLHICALIKLLENRSNHQTKN 82 (101)
Q Consensus 51 ~~~~G~vdE~Y~~HiC~LI~LL~Nrsnhqtkn 82 (101)
+.|.|. .||++-+-+|+++|.....-+..|
T Consensus 124 I~G~G~--~gY~lAl~al~~~l~~~~~g~~~~ 153 (154)
T 1uqr_A 124 ICGLGA--KGYDYALDFAISELQKIQLGEMMN 153 (154)
T ss_dssp EESSTT--HHHHHHHHHHHHHHHTC-------
T ss_pred EECCCH--HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 955987--999999999999998765134226
No 6
>>3czt_X Protein S100-B; EF-hand,calcium, zinc, copper, cytoplasm, metal- binding, nucleus, metal binding protein; 1.40A {Homo sapiens} PDB: 2h61_A 3d0y_A* 3d10_A* 1mq1_A 1uwo_A 2pru_A 1b4c_A 1dt7_A 1mwn_A 1qlk_A 1sym_A 1xyd_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 1psb_A ... (X:)
Probab=21.59 E-value=42 Score=15.93 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=39.6
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHCCCCCCC
Q ss_conf 2115578754632899998899999999-9877-88999876288623354321
Q gi|254781124|r 7 MYAPKEGNQYRPLRKEVRNAFPKILKSI-EKAL-EPYVDPLIEPVEIGKEGMVD 58 (101)
Q Consensus 7 myapkegnqYRP~r~EVR~AFP~ilKsi-EK~L-~~~VdPL~~PV~~~~~G~vd 58 (101)
.|+-+.|+.|.-+++|.+.++-....+. .... ...|+-++.-+-..+.|.++
T Consensus 17 ~~~d~dg~g~~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D~d~dG~I~ 70 (92)
T 3czt_X 17 QYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDNDGDGECD 70 (92)
T ss_dssp HHHTTSSSTTSBCHHHHHHHHHHHSTTTSCCCCCHHHHHHHHHHHCTTSSSSBC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 972648984728799999999998899874789889999999986689999697
No 7
>>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus} (C:)
Probab=18.10 E-value=80 Score=14.36 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 998778899987628862335
Q gi|254781124|r 34 IEKALEPYVDPLIEPVEIGKE 54 (101)
Q Consensus 34 iEK~L~~~VdPL~~PV~~~~~ 54 (101)
||.+-|..||..|+.|+..|.
T Consensus 3 ieeaasrivdavieqvkaaga 23 (26)
T 2drn_C 3 IEEAASRIVDAVIEQVKAAGA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 889999999999999997112
No 8
>>2vla_A Bpuji, restriction endonuclease R.bpuji; hydrolase, DNA recognition, helix-turn-helix; HET: PG6; 1.30A {Bacillus pumilus} (A:101-253)
Probab=17.07 E-value=82 Score=14.28 Aligned_cols=27 Identities=26% Similarity=0.424 Sum_probs=19.2
Q ss_pred HHHHHHHH---HCCCCCHHHHHHHHHHHHH
Q ss_conf 99999998---4111110034566544300
Q gi|254781124|r 65 ICALIKLL---ENRSNHQTKNDINKCVLSE 91 (101)
Q Consensus 65 iC~LI~LL---~Nrsnhqtkndinkcvlse 91 (101)
-|-|++|| +|..-.-||.||.-||+..
T Consensus 38 ~~yll~ll~~A~~~~I~lTkdei~~~i~N~ 67 (153)
T 2vla_A 38 FPYILQVLLTADNNNIQLSKDDIAYYVLNS 67 (153)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHTTTB
T ss_pred CHHHHHHHHHHCCCCEEECHHHHHHHHHHH
T ss_conf 259999998604561573267778998624
No 9
>>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} (A:)
Probab=15.58 E-value=82 Score=14.29 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999998778899987628862
Q gi|254781124|r 26 AFPKILKSIEKALEPYVDPLIEPVEI 51 (101)
Q Consensus 26 AFP~ilKsiEK~L~~~VdPL~~PV~~ 51 (101)
|=.-+|.++|+-|.|+.++|++-|++
T Consensus 117 aNtG~Il~Le~~l~~~l~~L~~av~~ 142 (143)
T 3cpt_A 117 ANTGLIVSLEKELAPLFEELRQVVEV 142 (143)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88889997899999999999998726
No 10
>>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus} (A:)
Probab=14.70 E-value=76 Score=14.50 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=18.9
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 233543211489999999999841111
Q gi|254781124|r 51 IGKEGMVDEGYRLHICALIKLLENRSN 77 (101)
Q Consensus 51 ~~~~G~vdE~Y~~HiC~LI~LL~Nrsn 77 (101)
|.|.|. .||++-+-+++.+|..+++
T Consensus 123 I~G~G~--~gY~lAl~al~~~l~~~~~ 147 (149)
T 2uyg_A 123 VSGFGP--LSYKLALVYLAETLEVGGE 147 (149)
T ss_dssp EESSTT--HHHHHHHHHHHHC------
T ss_pred EECCCH--HHHHHHHHHHHHHHHHCCC
T ss_conf 953986--9999999999999875469
Done!