Query gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 101
No_of_seqs 2 out of 4
Neff 1.2
Searched_HMMs 23785
Date Wed Jun 1 01:39:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781124.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea9_A JW2626, hypothetical pr 40.3 16 0.00066 17.5 2.6 20 22-41 47-66 (105)
2 2inw_A Putative structural pro 36.6 19 0.00081 17.0 2.6 19 23-41 62-80 (133)
3 1xk4_A Calgranulin A; S100 fam 35.2 21 0.00087 16.8 2.6 51 7-59 18-68 (93)
4 1kso_A S-100E protein, S100 ca 26.9 23 0.00095 16.6 1.6 62 7-68 18-82 (101)
5 2ox0_A JMJC domain-containing 22.0 29 0.0012 16.0 1.4 26 15-41 38-64 (381)
6 3cpt_A Mitogen-activated prote 21.1 36 0.0015 15.5 1.7 24 28-51 119-142 (143)
7 1k8u_A S100A6, calcyclin, CACY 19.4 34 0.0014 15.6 1.3 62 7-68 18-80 (90)
8 2drn_C 24-residues peptide fro 18.0 56 0.0024 14.4 2.5 20 34-53 3-22 (26)
9 3lr2_A Major ampullate spidroi 16.9 60 0.0025 14.2 2.4 24 53-76 108-131 (137)
10 3dxt_A JMJC domain-containing 13.6 33 0.0014 15.7 0.0 26 15-41 20-46 (354)
No 1
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=40.29 E-value=16 Score=17.54 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988999999999877889
Q gi|254781124|r 22 EVRNAFPKILKSIEKALEPY 41 (101)
Q Consensus 22 EVR~AFP~ilKsiEK~L~~~ 41 (101)
..-.|||.+||-+|..|.+=
T Consensus 47 ~Ld~aFP~~ikqlE~ml~sG 66 (105)
T 2ea9_A 47 KLDVVFPHFISQIESMLTTG 66 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 89989999999999986459
No 2
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=36.59 E-value=19 Score=17.01 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9988999999999877889
Q gi|254781124|r 23 VRNAFPKILKSIEKALEPY 41 (101)
Q Consensus 23 VR~AFP~ilKsiEK~L~~~ 41 (101)
.-.|||.+||-+|..|.+=
T Consensus 62 Ld~aFP~~ikqLE~ml~sG 80 (133)
T 2inw_A 62 LDQAFPLLMKQLELMLTGG 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 9989999999999986337
No 3
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=35.19 E-value=21 Score=16.84 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=37.1
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 21155787546328999988999999999877889998762886233543211
Q gi|254781124|r 7 MYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDE 59 (101)
Q Consensus 7 myapkegnqYRP~r~EVR~AFP~ilKsiEK~L~~~VdPL~~PV~~~~~G~vdE 59 (101)
-||-++|+.+.-++.|.+...-+.+-..-+ ...|+-++.-+..-+.|.||=
T Consensus 18 kya~kdG~~~~ls~~Elk~ll~~el~~~~~--~~~v~~i~~~lD~d~DG~IdF 68 (93)
T 1xk4_A 18 KYSLIKGNFHAVYRDDLKKLLETESPQYIR--KKGADVWFKELDINTDGAVNF 68 (93)
T ss_dssp HHHTSSSCTTCBCHHHHHHHHHHHSCHHHH--TTCHHHHHHHHCTTCSSSBCH
T ss_pred HHCCCCCCCCEECHHHHHHHHHHHCCCCCC--HHHHHHHHHHHCCCCCCCCCH
T ss_conf 981657997810599999999986788665--157999999966799994959
No 4
>1kso_A S-100E protein, S100 calcium-binding protein A3; S100,EF-hand,Ca2+ binding protein,Zn2+ binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.2
Probab=26.90 E-value=23 Score=16.61 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=42.0
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHH
Q ss_conf 211557875463289999889999999998--77889998762886233543211-489999999
Q gi|254781124|r 7 MYAPKEGNQYRPLRKEVRNAFPKILKSIEK--ALEPYVDPLIEPVEIGKEGMVDE-GYRLHICAL 68 (101)
Q Consensus 7 myapkegnqYRP~r~EVR~AFP~ilKsiEK--~L~~~VdPL~~PV~~~~~G~vdE-~Y~~HiC~L 68 (101)
.||-++|+++.-++.|.+...-+.+..+-+ --...|+-+..-+..-+.|.||= -|..-+..|
T Consensus 18 kYa~~dG~~~~Lsk~Elk~ll~~e~~~~~~~~~~~~~v~~~~~~lD~n~Dg~IdF~EF~~l~~~l 82 (101)
T 1kso_A 18 EYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACL 82 (101)
T ss_dssp HHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH
T ss_pred HHCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 98233799795889999999998723034667999999999999769999979299999999999
No 5
>2ox0_A JMJC domain-containing histone demethylation protein 3A; double-stranded beta helix, demethylase, oxygenase, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=21.98 E-value=29 Score=15.98 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 5463289999889999999998-77889
Q gi|254781124|r 15 QYRPLRKEVRNAFPKILKSIEK-ALEPY 41 (101)
Q Consensus 15 qYRP~r~EVR~AFP~ilKsiEK-~L~~~ 41 (101)
-+||+.+|-+| |.+.|.+||+ |.+.|
T Consensus 38 vF~PT~eEF~D-~~~YI~~I~~~Gae~~ 64 (381)
T 2ox0_A 38 TFYPTMEEFRN-FSRYIAYIESQGAHRA 64 (381)
T ss_dssp EECCCHHHHSC-HHHHHHHHHHTTGGGG
T ss_pred EECCCHHHHHC-HHHHHHHHHHCCCCCC
T ss_conf 28959899739-9999999976560534
No 6
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=21.15 E-value=36 Score=15.47 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998778899987628862
Q gi|254781124|r 28 PKILKSIEKALEPYVDPLIEPVEI 51 (101)
Q Consensus 28 P~ilKsiEK~L~~~VdPL~~PV~~ 51 (101)
.-+|.++|+-|+|+.++|+.-|++
T Consensus 119 tG~Il~Le~~l~~ll~~Lr~aV~~ 142 (143)
T 3cpt_A 119 TGLIVSLEKELAPLFEELRQVVEV 142 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 688998899999999999888537
No 7
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, APO, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=19.36 E-value=34 Score=15.62 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=33.4
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHH
Q ss_conf 2115578754632899998899999999987788999876288623354321-1489999999
Q gi|254781124|r 7 MYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVD-EGYRLHICAL 68 (101)
Q Consensus 7 myapkegnqYRP~r~EVR~AFP~ilKsiEK~L~~~VdPL~~PV~~~~~G~vd-E~Y~~HiC~L 68 (101)
.||-++|+++.-+++|.+...-+-+-...+.=...|+-+..-....+.|-|| +.|..-|..|
T Consensus 18 kYa~~~G~~~tLsk~Elk~Ll~~El~~~~~~d~~~v~~~m~~LD~n~Dg~vdF~EF~~li~~l 80 (90)
T 1k8u_A 18 KYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGAL 80 (90)
T ss_dssp HHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 972637984628899999999998543467987999999998477999969599999999999
No 8
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=18.01 E-value=56 Score=14.35 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99877889998762886233
Q gi|254781124|r 34 IEKALEPYVDPLIEPVEIGK 53 (101)
Q Consensus 34 iEK~L~~~VdPL~~PV~~~~ 53 (101)
||.+-|..||..|+.|+..|
T Consensus 3 ieeaasrivdavieqvkaag 22 (26)
T 2drn_C 3 IEEAASRIVDAVIEQVKAAG 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999999999999711
No 9
>3lr2_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT wild- structural protein; 1.70A {Euprosthenops australis} PDB: 3lr8_A* 3lr6_A* 3lrd_A*
Probab=16.88 E-value=60 Score=14.19 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 354321148999999999984111
Q gi|254781124|r 53 KEGMVDEGYRLHICALIKLLENRS 76 (101)
Q Consensus 53 ~~G~vdE~Y~~HiC~LI~LL~Nrs 76 (101)
--|+|+..++..|-.||.++-.-+
T Consensus 108 TTG~vN~~Fi~EI~~LI~mfaq~~ 131 (137)
T 3lr2_A 108 TTGVVNQPFINEITQLVSMFAQAG 131 (137)
T ss_dssp HTSSCCHHHHHHHHHHHHHHHHC-
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 728888899999999999998743
No 10
>3dxt_A JMJC domain-containing histone demethylation protein 3D; JMJD2D, histone demethylase, H3K9, jumonji domain- containing protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A*
Probab=13.62 E-value=33 Score=15.71 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 5463289999889999999998-77889
Q gi|254781124|r 15 QYRPLRKEVRNAFPKILKSIEK-ALEPY 41 (101)
Q Consensus 15 qYRP~r~EVR~AFP~ilKsiEK-~L~~~ 41 (101)
-|||+.+|-+| |.+.|.+|+. |.+.|
T Consensus 20 VF~PT~EEF~D-p~~YI~~I~~~Gae~y 46 (354)
T 3dxt_A 20 IFHPTKEEFND-FDKYIAYMESQGAHRA 46 (354)
T ss_dssp EECCCTTGGGC-HHHHHHHHHHTTGGGG
T ss_pred EECCCHHHHHC-HHHHHHHHHHCCCCCC
T ss_conf 47979999869-9999999986550534
Done!