BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781124|ref|YP_003065537.1| hypothetical protein
CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62]
(101 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 101
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG 60
MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG
Sbjct: 1 MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG 60
Query: 61 YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK 101
YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK
Sbjct: 61 YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK 101
>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 82
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 12 EGNQYRPLRKEVRNAFPKILKSIEKALEPY-VDPLIEPVEIGKEGMVDEGYRLHICALIK 70
+ +YRP ++EVR+AFP+++K++EK L + V+PL PV+ +G E Y H+C LI+
Sbjct: 2 DDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY--ESYISHVCELIE 59
Query: 71 LLENRS 76
LL+N+
Sbjct: 60 LLKNKD 65
>gi|238487886|ref|XP_002375181.1| calpain-like protein [Aspergillus flavus NRRL3357]
gi|220700060|gb|EED56399.1| calpain-like protein [Aspergillus flavus NRRL3357]
Length = 572
Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 3 PHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDP 44
P G++ G Y RKE R A +I+K E+ + Y DP
Sbjct: 68 PKGVIQGQDAGKSYEEARKECRRAVDRIVKECERLNQKYTDP 109
>gi|317143265|ref|XP_001819363.2| calpain-like protein [Aspergillus oryzae RIB40]
Length = 859
Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 3 PHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDP 44
P G++ G Y RKE R A +I+K E+ + Y DP
Sbjct: 111 PKGVIQGQDAGKSYEEARKECRRAVDRIVKECERLNQKYTDP 152
>gi|83767222|dbj|BAE57361.1| unnamed protein product [Aspergillus oryzae]
Length = 816
Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 3 PHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDP 44
P G++ G Y RKE R A +I+K E+ + Y DP
Sbjct: 68 PKGVIQGQDAGKSYEEARKECRRAVDRIVKECERLNQKYTDP 109
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 101
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG 60
MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG
Sbjct: 1 MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG 60
Query: 61 YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK 101
YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK
Sbjct: 61 YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK 101
>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 82
Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 12 EGNQYRPLRKEVRNAFPKILKSIEKALEPY-VDPLIEPVEIGKEGMVDEGYRLHICALIK 70
+ +YRP ++EVR+AFP+++K++EK L + V+PL PV+ +G E Y H+C LI+
Sbjct: 2 DDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY--ESYISHVCELIE 59
Query: 71 LLENRS 76
LL+N+
Sbjct: 60 LLKNKD 65
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 13 GNQYRPLRKEVRNAFP-KILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKL 71
N+YRP + +R P K++K E + YVDPL + Y H CAL+
Sbjct: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLYVDPLT------PRDISFTQYEKHACALVNW 230
Query: 72 LE 73
LE
Sbjct: 231 LE 232
>gi|145323938|ref|NP_001077558.1| unknown protein [Arabidopsis thaliana]
gi|332191615|gb|AEE29736.1| uncharacterized protein [Arabidopsis thaliana]
Length = 1014
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 20 RKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLLENRSNHQ 79
RK V +A ++L +E YVDP ++ + K+ + + +C+ I++L+ ++ +
Sbjct: 874 RKLVFDAVNEMLGKKLAFVESYVDPWMKQAKARKKVLSAQNLLKELCSEIEILQKQAKKR 933
Query: 80 T------------KNDINKCVLSEEFTIQNNK 99
+ + D KC+L E+ IQ+ K
Sbjct: 934 SENLLLLEEEEEEEEDFLKCILDEDMAIQSEK 965
>gi|15221824|ref|NP_173297.1| unknown protein [Arabidopsis thaliana]
gi|9795593|gb|AAF98411.1|AC026238_3 Unknown protein [Arabidopsis thaliana]
gi|20856609|gb|AAM26675.1| At1g18620/F25I16_13 [Arabidopsis thaliana]
gi|32306507|gb|AAP78937.1| At1g18620 [Arabidopsis thaliana]
gi|332191614|gb|AEE29735.1| uncharacterized protein [Arabidopsis thaliana]
Length = 978
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 20 RKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLLENRSNHQ 79
RK V +A ++L +E YVDP ++ + K+ + + +C+ I++L+ ++ +
Sbjct: 838 RKLVFDAVNEMLGKKLAFVESYVDPWMKQAKARKKVLSAQNLLKELCSEIEILQKQAKKR 897
Query: 80 T------------KNDINKCVLSEEFTIQNNK 99
+ + D KC+L E+ IQ+ K
Sbjct: 898 SENLLLLEEEEEEEEDFLKCILDEDMAIQSEK 929
>gi|71896325|ref|NP_001025537.1| elongation factor Tu GTP binding domain containing 2 [Xenopus
(Silurana) tropicalis]
gi|60618366|gb|AAH90572.1| eftud2 protein [Xenopus (Silurana) tropicalis]
gi|159155738|gb|AAI54880.1| eftud2 protein [Xenopus (Silurana) tropicalis]
Length = 974
Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 5 GLMYAPKEGNQYRPLRKEVRNAFPKILKSI-EKALEPYVDPLIEPVEIGKEGMVDEGYRL 63
G+ E +Y P +E+ P++ + E+ +P +P+I+PV+ K M+++G
Sbjct: 56 GMEVVLHEDKKYYPTAEEIYG--PEVETIVQEEDTQPLTEPIIKPVKAKKFSMMEQGLPA 113
Query: 64 HICALIKLLENRSNHQTKNDINKC 87
+ + L + N + ++ C
Sbjct: 114 TVYEMDFLADLMDNPELIRNVTLC 137
>gi|160420302|ref|NP_001080281.1| U5 snRNP-specific protein, 116 kD [Xenopus laevis]
gi|27469685|gb|AAH41724.1| Snrp116-pending-prov protein [Xenopus laevis]
Length = 974
Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 5 GLMYAPKEGNQYRPLRKEVRNAFPKILKSI-EKALEPYVDPLIEPVEIGKEGMVDEGYRL 63
G+ E +Y P +E+ P++ + E+ +P +P+I+PV+ K M+++G
Sbjct: 56 GMEVVLHEDKKYYPTAEEIYG--PEVETIVQEEDTQPLTEPIIKPVKAKKFSMMEQGLPA 113
Query: 64 HICALIKLLENRSNHQTKNDINKC 87
+ + L + N + ++ C
Sbjct: 114 TVYEMDFLADLMDNPELIRNVTLC 137
>gi|134085912|ref|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein component [Bos taurus]
gi|166231746|sp|A4FUD3|U5S1_BOVIN RecName: Full=116 kDa U5 small nuclear ribonucleoprotein component;
AltName: Full=Elongation factor Tu GTP-binding domain
protein 2; AltName: Full=U5 snRNP-specific protein, 116
kDa; Short=U5-116 kDa
gi|133777447|gb|AAI14718.1| EFTUD2 protein [Bos taurus]
Length = 972
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 5 GLMYAPKEGNQYRPLRKEVRNAFPKILKSI-EKALEPYVDPLIEPVEIGKEGMVDEGYRL 63
G+ E +Y P +EV P++ + E+ +P +P+I+PV+ K ++++ +
Sbjct: 54 GMEVVLHEDKKYYPTAEEVYG--PEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPV 111
Query: 64 HICALIKLLENRSNHQTKNDINKC 87
+ + L + N + ++ C
Sbjct: 112 TVYEMDSLADLMDNSELIRNVTLC 135
>gi|320095806|ref|ZP_08027448.1| methylmalonate-semialdehyde dehydrogenase [Actinomyces sp. oral
taxon 178 str. F0338]
gi|319977266|gb|EFW08967.1| methylmalonate-semialdehyde dehydrogenase [Actinomyces sp. oral
taxon 178 str. F0338]
Length = 508
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 12 EGNQYRPLRKEVRNAF---PKILKSIEKALEPYVDPLIEPV 49
+G YRP +E + F P IL ++++ L+ Y + + PV
Sbjct: 356 DGRGYRPAGEEYADGFWLGPTILDNVDRGLQVYREEVFGPV 396
>gi|327275796|ref|XP_003222658.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
component-like [Anolis carolinensis]
Length = 972
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 12 EGNQYRPLRKEVRNAFPKILKSI-EKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIK 70
E +Y P +EV P++ + E+ +P +P+I+PV+ K ++++ + + +
Sbjct: 61 EDKKYYPTAEEVYG--PEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDF 118
Query: 71 LLENRSNHQTKNDINKC 87
L + N + ++ C
Sbjct: 119 LADLMDNSELIRNVTLC 135
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.134 0.380
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,892,242,224
Number of Sequences: 14124377
Number of extensions: 68986286
Number of successful extensions: 133257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 133244
Number of HSP's gapped (non-prelim): 22
length of query: 101
length of database: 4,842,793,630
effective HSP length: 70
effective length of query: 31
effective length of database: 3,854,087,240
effective search space: 119476704440
effective search space used: 119476704440
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 76 (33.9 bits)