RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781124|ref|YP_003065537.1| hypothetical protein
CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation,
          signaling protein; HET: SEP; 2.95A {Homo sapiens}
          (A:53-119)
          Length = 67

 Score = 25.9 bits (57), Expect = 2.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 10 PKEGNQYRPLRKEVRNAFPKILKSIEK 36
           K  +   P     R  +PKI++ IE 
Sbjct: 33 NKPPDGNAPPNSFYRALYPKIIQDIET 59


>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL
          carrier protein desaturase; electron transfer,
          four-helix bundle, oxidoreductase; HET: GVM; 1.95A
          {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A
          1afr_A 2j2f_A (A:1-155)
          Length = 155

 Score = 25.1 bits (55), Expect = 3.4
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 30 ILKSIEKALEPYVDPLIEPVE 50
          I KS++      V   ++ VE
Sbjct: 14 IFKSLDDWARNNVLIHLKSVE 34


>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
           transferase; 2.00A {Saccharomyces cerevisiae} PDB:
           2if8_A* (A:122-363)
          Length = 242

 Score = 24.0 bits (51), Expect = 8.0
 Identities = 4/29 (13%), Positives = 7/29 (24%)

Query: 53  KEGMVDEGYRLHICALIKLLENRSNHQTK 81
                DE     +  L+ +      H   
Sbjct: 212 PGKGYDENVIEGVETLLDIFMKFLEHHHH 240


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 746,439
Number of extensions: 29841
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 6
Length of query: 101
Length of database: 4,956,049
Length adjustment: 59
Effective length of query: 42
Effective length of database: 2,961,554
Effective search space: 124385268
Effective search space used: 124385268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)