Query gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:27:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781125.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrsa_ c.1.19.4 (A:) D-lysine 9.1 14 0.001 16.8 -1.9 20 19-38 256-277 (516)
2 d1b34b_ b.38.1.1 (B:) D2 core 6.0 95 0.0069 12.3 1.6 22 18-39 30-51 (93)
3 d2nn6i1 b.40.4.5 (I:61-185) Ex 4.5 1.2E+02 0.0088 11.8 1.3 21 11-31 75-96 (125)
4 d2b3ga1 b.40.4.3 (A:3-114) Rep 4.0 1.3E+02 0.0097 11.5 1.9 26 12-37 35-63 (112)
5 d1lp1a_ a.8.1.1 (A:) Immunoglo 3.7 1.1E+02 0.008 12.0 0.2 27 30-56 2-30 (55)
6 d1mcvi_ g.3.2.1 (I:) Trypsin i 3.7 30 0.0022 15.0 -2.7 11 5-15 4-14 (28)
7 d2fzta1 a.46.3.1 (A:1-78) Hypo 3.4 1E+02 0.0073 12.2 -0.3 12 39-50 19-30 (78)
8 d1i5pa1 b.18.1.3 (A:473-633) d 3.3 1.5E+02 0.011 11.2 2.0 19 14-32 59-77 (161)
9 d1iura_ a.2.3.1 (A:) Hypotheti 3.2 1.6E+02 0.011 11.1 0.8 29 25-53 5-33 (88)
10 d1fc2c_ a.8.1.1 (C:) Immunoglo 3.2 1.6E+02 0.011 11.1 1.1 27 30-56 1-29 (44)
No 1
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD {Clostridium sticklandii [TaxId: 1511]}
Probab=9.09 E-value=14 Score=16.83 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=14.4
Q ss_pred EECCCCCEEEEEECCCH--HHH
Q ss_conf 30258750378711143--778
Q gi|254781125|r 19 LSAKDPHYNVIFRDEVP--SFI 38 (59)
Q Consensus 19 lsakdphynvifrdevp--sfi 38 (59)
.--.||.||++|||--+ ||+
T Consensus 256 ~~lnD~~YgILfRdINm~Rtfv 277 (516)
T d1xrsa_ 256 VMLNDALYGILFRDINMQRTMI 277 (516)
T ss_dssp EEECCSSHHHHHHCBCHHHHHH
T ss_pred HHHCCHHHCCEECCCCHHHHHH
T ss_conf 2220223320003653567798
No 2
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.95 E-value=95 Score=12.32 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=16.9
Q ss_pred EEECCCCCEEEEEECCCHHHHH
Q ss_conf 7302587503787111437789
Q gi|254781125|r 18 RLSAKDPHYNVIFRDEVPSFIY 39 (59)
Q Consensus 18 rlsakdphynvifrdevpsfiy 39 (59)
.|.|-|.|.|++..|-+-....
T Consensus 30 ~L~afD~~~NlVL~d~~E~~~~ 51 (93)
T d1b34b_ 30 RVKAFDRHCNMVLENVKEMWTE 51 (93)
T ss_dssp EEEEECTTCCEEEEEEEEC---
T ss_pred EEEEECCCEEEEEECEEEEEEE
T ss_conf 9998612006884030899971
No 3
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.46 E-value=1.2e+02 Score=11.76 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=16.3
Q ss_pred CCCCC-EEEEECCCCCEEEEEE
Q ss_conf 07864-1473025875037871
Q gi|254781125|r 11 LNDPN-RYRLSAKDPHYNVIFR 31 (59)
Q Consensus 11 lndpn-ryrlsakdphynvifr 31 (59)
+.|.+ -|.||.+.+.+.|+|-
T Consensus 75 ~~~~~~~~~Lst~~~~LGVv~A 96 (125)
T d2nn6i1 75 LGDAQSNYLLTTAENELGVVVA 96 (125)
T ss_dssp EETTTTEEEEECCSSSCEECCC
T ss_pred CCCCCCCEEEEECCCCCEEEEE
T ss_conf 4688763799723898389999
No 4
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.95 E-value=1.3e+02 Score=11.52 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=17.1
Q ss_pred CCCCEEEEECCCCCEEE---EEECCCHHH
Q ss_conf 78641473025875037---871114377
Q gi|254781125|r 12 NDPNRYRLSAKDPHYNV---IFRDEVPSF 37 (59)
Q Consensus 12 ndpnryrlsakdphynv---ifrdevpsf 37 (59)
+.+.|||+..-|-.|.+ ++....-+.
T Consensus 35 ~~~~RyR~~lSDG~~~~~~amLatqln~~ 63 (112)
T d2b3ga1 35 NSPPRYRLLMSDGLNTLSSFMLATQLNPL 63 (112)
T ss_dssp -CCCEEEEEEECSSEEEEEEEECGGGHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 98640899997765311012334312556
No 5
>d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=3.70 E-value=1.1e+02 Score=11.97 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=16.2
Q ss_pred EECCCHHHHHHHHCCCH--HHHHHHHHHH
Q ss_conf 71114377898616871--1346888887
Q gi|254781125|r 30 FRDEVPSFIYETLNIPA--DKRKMAVIRS 56 (59)
Q Consensus 30 frdevpsfiyetlnipa--dkrkmavirs 56 (59)
|.+|..+-.||.++.|- +...-+.|.|
T Consensus 2 fnke~~~Af~ei~~lPNLn~~Qrn~fIqS 30 (55)
T d1lp1a_ 2 FNKELSVAGREIVTLPNLNDPQKKAFIFS 30 (55)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 34899998999982888998999889988
No 6
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=3.66 E-value=30 Score=15.01 Aligned_cols=11 Identities=55% Similarity=1.211 Sum_probs=6.7
Q ss_pred HHHHHHCCCCC
Q ss_conf 99998507864
Q gi|254781125|r 5 LEYIRCLNDPN 15 (59)
Q Consensus 5 leyirclndpn 15 (59)
|||.||-.|..
T Consensus 4 leym~c~~dsd 14 (28)
T d1mcvi_ 4 LEYMRCKQDSD 14 (28)
T ss_dssp CCCCBCSSGGG
T ss_pred CHHHHCCCCCC
T ss_conf 02410235444
No 7
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=3.44 E-value=1e+02 Score=12.20 Aligned_cols=12 Identities=58% Similarity=0.636 Sum_probs=7.2
Q ss_pred HHHHCCCHHHHH
Q ss_conf 986168711346
Q gi|254781125|r 39 YETLNIPADKRK 50 (59)
Q Consensus 39 yetlnipadkrk 50 (59)
|||||.--|+|+
T Consensus 19 yE~L~~LL~kRe 30 (78)
T d2fzta1 19 YETLLSLLNKRK 30 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 8
>d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]}
Probab=3.28 E-value=1.5e+02 Score=11.17 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.1
Q ss_pred CCEEEEECCCCCEEEEEEC
Q ss_conf 6414730258750378711
Q gi|254781125|r 14 PNRYRLSAKDPHYNVIFRD 32 (59)
Q Consensus 14 pnryrlsakdphynvifrd 32 (59)
--||+||+..-.|+...|-
T Consensus 59 ~~~Y~L~gng~~Y~L~LRv 77 (161)
T d1i5pa1 59 TARYTLRGNGNSYNLYLRV 77 (161)
T ss_dssp EEEEEEECCSEEEEEEEEE
T ss_pred EEEEEEECCCCEEEEEEEE
T ss_conf 8999995699678999998
No 9
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=1.6e+02 Score=11.15 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=18.8
Q ss_pred CEEEEEECCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 50378711143778986168711346888
Q gi|254781125|r 25 HYNVIFRDEVPSFIYETLNIPADKRKMAV 53 (59)
Q Consensus 25 hynvifrdevpsfiyetlnipadkrkmav 53 (59)
|..++.|.++..=.|+.|.++.+--.-.+
T Consensus 5 ~h~~~~r~~~~~~~y~iL~v~~~as~~eI 33 (88)
T d1iura_ 5 HHHLVPRGSILKEVTSVVEQAWKLPESER 33 (88)
T ss_dssp CCCCCCSSSCHHHHHHHHHHTTSSCSHHH
T ss_pred HCCCCCCHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 30545500379999999599889899999
No 10
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=3.22 E-value=1.6e+02 Score=11.13 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=16.4
Q ss_pred EECCCHHHHHHHHCCCH--HHHHHHHHHH
Q ss_conf 71114377898616871--1346888887
Q gi|254781125|r 30 FRDEVPSFIYETLNIPA--DKRKMAVIRS 56 (59)
Q Consensus 30 frdevpsfiyetlnipa--dkrkmavirs 56 (59)
|..|.-+-.||.++.|- +..+-+.|.|
T Consensus 1 fnkeqq~Af~Eil~lPNLne~Qrn~fI~S 29 (44)
T d1fc2c_ 1 FNKEQQNAFYEILHLPNLNEEQRNGFIQS 29 (44)
T ss_dssp CCSSHHHHHHHHHTCSSSCTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 96899999999983888998999888887
Done!